Multiple sequence alignment - TraesCS1A01G046400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G046400 chr1A 100.000 5326 0 0 1 5326 28365562 28360237 0.000000e+00 9836.0
1 TraesCS1A01G046400 chr1A 83.079 1247 151 21 3730 4944 28380036 28378818 0.000000e+00 1079.0
2 TraesCS1A01G046400 chr1A 82.416 836 91 20 4137 4944 28406673 28405866 0.000000e+00 678.0
3 TraesCS1A01G046400 chr1A 85.337 416 58 3 3730 4143 28510603 28510189 1.370000e-115 427.0
4 TraesCS1A01G046400 chr1A 90.000 270 22 5 1 267 28371247 28370980 1.420000e-90 344.0
5 TraesCS1A01G046400 chr1D 88.908 4562 275 95 567 5022 27579897 27575461 0.000000e+00 5408.0
6 TraesCS1A01G046400 chr1D 92.160 2079 127 18 3016 5084 27541498 27539446 0.000000e+00 2904.0
7 TraesCS1A01G046400 chr1D 91.390 964 45 17 2087 3024 27546864 27545913 0.000000e+00 1286.0
8 TraesCS1A01G046400 chr1D 86.653 1004 66 26 567 1537 27556408 27555440 0.000000e+00 1050.0
9 TraesCS1A01G046400 chr1D 89.803 304 28 3 267 570 27556735 27556435 2.330000e-103 387.0
10 TraesCS1A01G046400 chr1D 88.276 290 27 2 267 556 27580255 27579973 1.840000e-89 340.0
11 TraesCS1A01G046400 chr1D 79.924 264 28 13 1 260 27558030 27557788 2.550000e-38 171.0
12 TraesCS1A01G046400 chr1D 83.478 115 9 2 1535 1649 27555416 27555312 1.220000e-16 99.0
13 TraesCS1A01G046400 chr1D 100.000 30 0 0 540 569 27579955 27579926 7.450000e-04 56.5
14 TraesCS1A01G046400 chr1B 93.471 2665 139 16 2176 4834 43045414 43042779 0.000000e+00 3925.0
15 TraesCS1A01G046400 chr1B 81.100 1254 164 35 3730 4950 43215839 43214626 0.000000e+00 935.0
16 TraesCS1A01G046400 chr1B 90.979 521 32 6 952 1472 43047688 43047183 0.000000e+00 688.0
17 TraesCS1A01G046400 chr1B 82.635 501 78 5 4831 5326 42985853 42985357 8.190000e-118 435.0
18 TraesCS1A01G046400 chr1B 82.456 456 55 18 1647 2099 43047059 43046626 5.040000e-100 375.0
19 TraesCS1A01G046400 chr1B 87.407 270 28 5 1 267 43053863 43053597 6.700000e-79 305.0
20 TraesCS1A01G046400 chr1B 86.235 247 10 8 567 794 43048167 43047926 4.120000e-61 246.0
21 TraesCS1A01G046400 chr1B 100.000 30 0 0 2142 2171 43045472 43045443 7.450000e-04 56.5
22 TraesCS1A01G046400 chr1B 100.000 30 0 0 540 569 43048225 43048196 7.450000e-04 56.5
23 TraesCS1A01G046400 chr5D 86.091 1517 166 31 2176 3676 221477866 221476379 0.000000e+00 1591.0
24 TraesCS1A01G046400 chr5D 83.575 621 85 9 3803 4411 221476275 221475660 2.780000e-157 566.0
25 TraesCS1A01G046400 chr5D 79.103 914 98 45 959 1834 221480224 221479366 1.300000e-150 544.0
26 TraesCS1A01G046400 chr5A 84.833 1589 176 34 2176 3737 302554624 302556174 0.000000e+00 1539.0
27 TraesCS1A01G046400 chr5A 84.345 626 81 10 3798 4411 302556205 302556825 9.870000e-167 597.0
28 TraesCS1A01G046400 chr5A 87.143 490 34 14 991 1458 302552137 302552619 3.650000e-146 529.0
29 TraesCS1A01G046400 chr5A 78.916 332 41 7 4417 4730 302556881 302557201 1.170000e-46 198.0
30 TraesCS1A01G046400 chr5B 86.037 1461 171 21 2229 3676 244008290 244006850 0.000000e+00 1537.0
31 TraesCS1A01G046400 chr5B 81.556 797 91 32 959 1728 244011031 244010264 1.640000e-169 606.0
32 TraesCS1A01G046400 chr5B 84.127 630 79 12 3798 4411 244006669 244006045 1.650000e-164 590.0
33 TraesCS1A01G046400 chr2D 81.473 421 76 2 2409 2828 460728369 460727950 1.420000e-90 344.0
34 TraesCS1A01G046400 chr2A 80.706 425 78 4 2409 2831 603549942 603549520 1.430000e-85 327.0
35 TraesCS1A01G046400 chr2A 81.111 90 10 6 1254 1338 35877529 35877616 1.240000e-06 65.8
36 TraesCS1A01G046400 chr2A 86.667 60 5 2 1282 1338 35917063 35917122 4.450000e-06 63.9
37 TraesCS1A01G046400 chr6B 94.286 35 1 1 59 92 653887905 653887871 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G046400 chr1A 28360237 28365562 5325 True 9836.000000 9836 100.000000 1 5326 1 chr1A.!!$R1 5325
1 TraesCS1A01G046400 chr1A 28378818 28380036 1218 True 1079.000000 1079 83.079000 3730 4944 1 chr1A.!!$R3 1214
2 TraesCS1A01G046400 chr1A 28405866 28406673 807 True 678.000000 678 82.416000 4137 4944 1 chr1A.!!$R4 807
3 TraesCS1A01G046400 chr1D 27539446 27541498 2052 True 2904.000000 2904 92.160000 3016 5084 1 chr1D.!!$R1 2068
4 TraesCS1A01G046400 chr1D 27575461 27580255 4794 True 1934.833333 5408 92.394667 267 5022 3 chr1D.!!$R4 4755
5 TraesCS1A01G046400 chr1D 27545913 27546864 951 True 1286.000000 1286 91.390000 2087 3024 1 chr1D.!!$R2 937
6 TraesCS1A01G046400 chr1D 27555312 27558030 2718 True 426.750000 1050 84.964500 1 1649 4 chr1D.!!$R3 1648
7 TraesCS1A01G046400 chr1B 43214626 43215839 1213 True 935.000000 935 81.100000 3730 4950 1 chr1B.!!$R3 1220
8 TraesCS1A01G046400 chr1B 43042779 43048225 5446 True 891.166667 3925 92.190167 540 4834 6 chr1B.!!$R4 4294
9 TraesCS1A01G046400 chr5D 221475660 221480224 4564 True 900.333333 1591 82.923000 959 4411 3 chr5D.!!$R1 3452
10 TraesCS1A01G046400 chr5A 302552137 302557201 5064 False 715.750000 1539 83.809250 991 4730 4 chr5A.!!$F1 3739
11 TraesCS1A01G046400 chr5B 244006045 244011031 4986 True 911.000000 1537 83.906667 959 4411 3 chr5B.!!$R1 3452

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
779 1911 0.324368 TACTGGACTGGAGTCGGCAT 60.324 55.000 0.74 0.0 45.65 4.40 F
1649 2994 1.043816 CATGTCGCTCTATGGGGAGT 58.956 55.000 0.00 0.0 35.89 3.85 F
1909 3863 0.597568 TGCCGTCTTTCTTGCCATTG 59.402 50.000 0.00 0.0 0.00 2.82 F
1910 3864 0.598065 GCCGTCTTTCTTGCCATTGT 59.402 50.000 0.00 0.0 0.00 2.71 F
1913 3867 1.608590 CGTCTTTCTTGCCATTGTGGT 59.391 47.619 0.00 0.0 40.46 4.16 F
1919 3873 1.686052 TCTTGCCATTGTGGTTGGAAC 59.314 47.619 0.00 0.0 40.46 3.62 F
1941 3895 1.843851 TGGAAGTGGTCTGTTCCTGTT 59.156 47.619 2.96 0.0 42.51 3.16 F
3796 8018 2.094417 GCGGTGCTTCTTGTATCTTGTC 59.906 50.000 0.00 0.0 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1695 3040 0.762418 ATCCACGTGACCAAGAACCA 59.238 50.000 19.30 0.0 0.00 3.67 R
2499 6612 2.373169 ACAAAGCAGAGACTCCCATTGA 59.627 45.455 12.75 0.0 0.00 2.57 R
3776 7998 3.589988 AGACAAGATACAAGAAGCACCG 58.410 45.455 0.00 0.0 0.00 4.94 R
3898 8132 6.947733 AGTTATGGATCAGTCAATTTGTCCAA 59.052 34.615 9.07 0.0 39.02 3.53 R
3943 8202 1.739338 CTTCCAGTCGCCGCCTCTAT 61.739 60.000 0.00 0.0 0.00 1.98 R
3950 8209 2.125912 CCACTCTTCCAGTCGCCG 60.126 66.667 0.00 0.0 30.26 6.46 R
4075 8334 2.687914 GCTAATCCAGGCATCTTGGGTT 60.688 50.000 0.00 0.0 0.00 4.11 R
5067 9414 0.037697 TTCACGCATCTAACGGCTGT 60.038 50.000 0.00 0.0 34.00 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 72 5.633182 GTCATACGCATGTTTTTGAATGGTT 59.367 36.000 0.00 0.00 33.57 3.67
71 73 6.145371 GTCATACGCATGTTTTTGAATGGTTT 59.855 34.615 0.00 0.00 33.57 3.27
104 108 2.138596 ACTTGCGCCAACATTTTCTG 57.861 45.000 4.18 0.00 0.00 3.02
115 119 6.165577 GCCAACATTTTCTGTCCATTGTAAT 58.834 36.000 0.00 0.00 36.98 1.89
116 120 6.650390 GCCAACATTTTCTGTCCATTGTAATT 59.350 34.615 0.00 0.00 36.98 1.40
117 121 7.360269 GCCAACATTTTCTGTCCATTGTAATTG 60.360 37.037 0.00 0.00 36.98 2.32
118 122 7.656948 CCAACATTTTCTGTCCATTGTAATTGT 59.343 33.333 0.00 0.00 36.98 2.71
125 130 9.829507 TTTCTGTCCATTGTAATTGTTTTTGAT 57.170 25.926 0.00 0.00 0.00 2.57
217 224 9.533831 AATCCTATCAACAATTCTAAAAGGTGT 57.466 29.630 0.00 0.00 0.00 4.16
246 253 9.762933 AAACATTATTTTTGCACTACATGAACT 57.237 25.926 0.00 0.00 0.00 3.01
260 267 8.567948 CACTACATGAACTCCTTTTAAATGTGT 58.432 33.333 0.00 0.00 0.00 3.72
261 268 8.567948 ACTACATGAACTCCTTTTAAATGTGTG 58.432 33.333 0.00 0.00 0.00 3.82
265 272 7.815840 TGAACTCCTTTTAAATGTGTGATGA 57.184 32.000 0.00 0.00 0.00 2.92
267 274 8.134895 TGAACTCCTTTTAAATGTGTGATGAAC 58.865 33.333 0.00 0.00 0.00 3.18
268 275 7.581213 ACTCCTTTTAAATGTGTGATGAACA 57.419 32.000 0.00 0.00 36.04 3.18
269 276 8.181904 ACTCCTTTTAAATGTGTGATGAACAT 57.818 30.769 0.00 0.00 41.97 2.71
270 277 8.299570 ACTCCTTTTAAATGTGTGATGAACATC 58.700 33.333 7.73 7.73 41.97 3.06
308 1360 3.086600 GGAGGCCCTGAGACCCAG 61.087 72.222 0.00 0.00 42.55 4.45
324 1376 2.292918 ACCCAGCCTCTAATCCAGTACA 60.293 50.000 0.00 0.00 0.00 2.90
352 1404 4.899239 GCTCGCCGCCATGCTACT 62.899 66.667 0.00 0.00 0.00 2.57
476 1528 3.762779 GCACATTGCTATTCAGTGGTTC 58.237 45.455 0.00 0.00 40.96 3.62
528 1580 7.665559 GTCCATATTATAGTGGATTTGGCTCAA 59.334 37.037 6.80 0.00 45.57 3.02
529 1581 8.393259 TCCATATTATAGTGGATTTGGCTCAAT 58.607 33.333 0.00 0.00 39.51 2.57
616 1729 1.670791 GGAACAAGTGAACCACGGAA 58.329 50.000 0.00 0.00 39.64 4.30
634 1747 4.736896 GAGCACCGGTCACGTCCC 62.737 72.222 2.59 0.00 38.78 4.46
757 1889 2.620585 GGGCTGCAGAAATCTTACCATC 59.379 50.000 20.43 0.00 0.00 3.51
761 1893 5.532406 GGCTGCAGAAATCTTACCATCATTA 59.468 40.000 20.43 0.00 0.00 1.90
762 1894 6.433766 GCTGCAGAAATCTTACCATCATTAC 58.566 40.000 20.43 0.00 0.00 1.89
763 1895 6.261826 GCTGCAGAAATCTTACCATCATTACT 59.738 38.462 20.43 0.00 0.00 2.24
764 1896 7.558161 TGCAGAAATCTTACCATCATTACTG 57.442 36.000 0.00 0.00 0.00 2.74
765 1897 6.543465 TGCAGAAATCTTACCATCATTACTGG 59.457 38.462 0.00 0.00 39.80 4.00
779 1911 0.324368 TACTGGACTGGAGTCGGCAT 60.324 55.000 0.74 0.00 45.65 4.40
813 1964 3.749981 CCGTAATGGCTCATGGGC 58.250 61.111 9.80 9.80 41.27 5.36
822 1973 2.114625 CTCATGGGCCATGGCGAT 59.885 61.111 38.66 20.87 41.66 4.58
840 2003 2.516225 GAATGGGGTAGCCGTGGC 60.516 66.667 4.56 1.67 42.33 5.01
857 2020 2.985282 CGGTGCATGCCCAAGTGT 60.985 61.111 16.68 0.00 0.00 3.55
890 2069 3.431725 CGCTTCGCTTTCCCCCAC 61.432 66.667 0.00 0.00 0.00 4.61
922 2101 2.584970 TATTCGCTTGCCGCTCGG 60.585 61.111 3.56 3.56 36.73 4.63
1365 2630 2.852075 TGCCCCTTCTTGGACGGT 60.852 61.111 0.00 0.00 38.35 4.83
1577 2922 6.816136 TGTGTCAGAGAAATTTCTAGTCACA 58.184 36.000 28.46 28.46 38.16 3.58
1579 2924 7.224753 TGTGTCAGAGAAATTTCTAGTCACAAC 59.775 37.037 29.19 19.70 37.88 3.32
1580 2925 7.439655 GTGTCAGAGAAATTTCTAGTCACAACT 59.560 37.037 26.68 15.60 37.73 3.16
1581 2926 7.653713 TGTCAGAGAAATTTCTAGTCACAACTC 59.346 37.037 20.51 4.84 37.73 3.01
1582 2927 7.653713 GTCAGAGAAATTTCTAGTCACAACTCA 59.346 37.037 20.51 0.00 37.73 3.41
1583 2928 7.653713 TCAGAGAAATTTCTAGTCACAACTCAC 59.346 37.037 20.51 3.90 37.73 3.51
1606 2951 7.338196 TCACAACTCACAAGAACCTTAAATTCA 59.662 33.333 2.82 0.00 0.00 2.57
1607 2952 7.432252 CACAACTCACAAGAACCTTAAATTCAC 59.568 37.037 2.82 0.00 0.00 3.18
1608 2953 7.339466 ACAACTCACAAGAACCTTAAATTCACT 59.661 33.333 2.82 0.00 0.00 3.41
1631 2976 8.611757 CACTATTATCCGACATGAATTTCAACA 58.388 33.333 0.00 0.00 0.00 3.33
1645 2990 2.602257 TCAACATGTCGCTCTATGGG 57.398 50.000 0.00 0.00 0.00 4.00
1649 2994 1.043816 CATGTCGCTCTATGGGGAGT 58.956 55.000 0.00 0.00 35.89 3.85
1695 3040 5.880901 ACTCACAAGTTCCAATCCATTACT 58.119 37.500 0.00 0.00 28.74 2.24
1754 3114 6.183360 TGTGCAGTTTTTAATTTTCAGTTGGC 60.183 34.615 0.00 0.00 0.00 4.52
1762 3122 6.636562 TTAATTTTCAGTTGGCCGAACTTA 57.363 33.333 15.32 7.58 42.70 2.24
1798 3158 2.134789 AGGATGGTGATGGCTTTGTC 57.865 50.000 0.00 0.00 0.00 3.18
1811 3171 4.602995 TGGCTTTGTCAAATAAACGTGAC 58.397 39.130 0.00 0.00 43.66 3.67
1818 3178 4.212425 TGTCAAATAAACGTGACGCAATCT 59.788 37.500 4.25 0.00 45.83 2.40
1819 3179 5.405873 TGTCAAATAAACGTGACGCAATCTA 59.594 36.000 4.25 0.00 45.83 1.98
1834 3746 5.049198 ACGCAATCTATAGCAATCAACATGG 60.049 40.000 0.00 0.00 0.00 3.66
1894 3848 0.729116 GGTCTGACATGATGTTGCCG 59.271 55.000 10.38 0.00 0.00 5.69
1907 3861 0.598065 GTTGCCGTCTTTCTTGCCAT 59.402 50.000 0.00 0.00 0.00 4.40
1908 3862 1.000274 GTTGCCGTCTTTCTTGCCATT 60.000 47.619 0.00 0.00 0.00 3.16
1909 3863 0.597568 TGCCGTCTTTCTTGCCATTG 59.402 50.000 0.00 0.00 0.00 2.82
1910 3864 0.598065 GCCGTCTTTCTTGCCATTGT 59.402 50.000 0.00 0.00 0.00 2.71
1911 3865 1.666888 GCCGTCTTTCTTGCCATTGTG 60.667 52.381 0.00 0.00 0.00 3.33
1913 3867 1.608590 CGTCTTTCTTGCCATTGTGGT 59.391 47.619 0.00 0.00 40.46 4.16
1914 3868 2.034558 CGTCTTTCTTGCCATTGTGGTT 59.965 45.455 0.00 0.00 40.46 3.67
1915 3869 3.383761 GTCTTTCTTGCCATTGTGGTTG 58.616 45.455 0.00 0.00 40.46 3.77
1916 3870 2.364970 TCTTTCTTGCCATTGTGGTTGG 59.635 45.455 0.00 0.00 40.46 3.77
1917 3871 2.079170 TTCTTGCCATTGTGGTTGGA 57.921 45.000 0.00 0.00 40.46 3.53
1918 3872 2.079170 TCTTGCCATTGTGGTTGGAA 57.921 45.000 0.00 0.00 40.46 3.53
1919 3873 1.686052 TCTTGCCATTGTGGTTGGAAC 59.314 47.619 0.00 0.00 40.46 3.62
1941 3895 1.843851 TGGAAGTGGTCTGTTCCTGTT 59.156 47.619 2.96 0.00 42.51 3.16
1974 3928 7.656137 TGAGTCCTCTGTTATTTCTGTTGTTAC 59.344 37.037 0.00 0.00 0.00 2.50
1977 3931 6.934645 TCCTCTGTTATTTCTGTTGTTACTGG 59.065 38.462 0.00 0.00 0.00 4.00
1979 3933 7.307989 CCTCTGTTATTTCTGTTGTTACTGGTG 60.308 40.741 0.00 0.00 0.00 4.17
1981 3935 7.554835 TCTGTTATTTCTGTTGTTACTGGTGTT 59.445 33.333 0.00 0.00 0.00 3.32
1982 3936 7.476667 TGTTATTTCTGTTGTTACTGGTGTTG 58.523 34.615 0.00 0.00 0.00 3.33
1983 3937 7.121463 TGTTATTTCTGTTGTTACTGGTGTTGT 59.879 33.333 0.00 0.00 0.00 3.32
1985 3939 7.633193 ATTTCTGTTGTTACTGGTGTTGTTA 57.367 32.000 0.00 0.00 0.00 2.41
1986 3940 7.633193 TTTCTGTTGTTACTGGTGTTGTTAT 57.367 32.000 0.00 0.00 0.00 1.89
1987 3941 6.612247 TCTGTTGTTACTGGTGTTGTTATG 57.388 37.500 0.00 0.00 0.00 1.90
1988 3942 6.116806 TCTGTTGTTACTGGTGTTGTTATGT 58.883 36.000 0.00 0.00 0.00 2.29
1989 3943 6.600032 TCTGTTGTTACTGGTGTTGTTATGTT 59.400 34.615 0.00 0.00 0.00 2.71
1990 3944 6.787225 TGTTGTTACTGGTGTTGTTATGTTC 58.213 36.000 0.00 0.00 0.00 3.18
1991 3945 6.600032 TGTTGTTACTGGTGTTGTTATGTTCT 59.400 34.615 0.00 0.00 0.00 3.01
1992 3946 7.121463 TGTTGTTACTGGTGTTGTTATGTTCTT 59.879 33.333 0.00 0.00 0.00 2.52
1993 3947 7.633193 TGTTACTGGTGTTGTTATGTTCTTT 57.367 32.000 0.00 0.00 0.00 2.52
1994 3948 8.057536 TGTTACTGGTGTTGTTATGTTCTTTT 57.942 30.769 0.00 0.00 0.00 2.27
1995 3949 8.524487 TGTTACTGGTGTTGTTATGTTCTTTTT 58.476 29.630 0.00 0.00 0.00 1.94
2048 4003 8.953313 GCTGGTTAGCTTCCTTAGTTAAATTTA 58.047 33.333 0.00 0.00 46.57 1.40
2076 5027 3.613030 TCATGTATGTGACTGCAGCAAT 58.387 40.909 15.27 11.04 0.00 3.56
2084 5035 6.764308 ATGTGACTGCAGCAATTAGTTTAT 57.236 33.333 15.27 0.00 0.00 1.40
2111 5062 2.865119 AGCACATCACTGATGGACAA 57.135 45.000 20.78 0.00 43.60 3.18
2113 6175 3.489355 AGCACATCACTGATGGACAAAA 58.511 40.909 20.78 0.00 43.60 2.44
2140 6202 4.225042 TGAAGAGCCTTTATGGTGAAGCTA 59.775 41.667 0.00 0.00 38.35 3.32
2171 6233 8.629158 ACAGAGCATTGTAATTAAGTTTGAACA 58.371 29.630 0.00 0.00 0.00 3.18
2172 6234 9.121517 CAGAGCATTGTAATTAAGTTTGAACAG 57.878 33.333 0.00 0.00 0.00 3.16
2220 6328 8.879342 AGTAATAATCTTACTGAGCATGTCAC 57.121 34.615 0.00 0.00 34.25 3.67
2221 6329 8.700051 AGTAATAATCTTACTGAGCATGTCACT 58.300 33.333 0.00 0.00 34.25 3.41
2222 6330 7.783090 AATAATCTTACTGAGCATGTCACTG 57.217 36.000 0.00 0.00 0.00 3.66
2223 6331 2.964740 TCTTACTGAGCATGTCACTGC 58.035 47.619 0.00 0.00 42.62 4.40
2260 6368 7.002250 TGCAAATTGGAATCCTACAAATGAA 57.998 32.000 0.00 0.00 0.00 2.57
2272 6381 5.869344 TCCTACAAATGAAAGTGATCGTCAG 59.131 40.000 0.00 0.00 0.00 3.51
2364 6476 9.657419 CCAAAACAATTTGCTTTTATCCTCTAT 57.343 29.630 0.00 0.00 43.73 1.98
2398 6510 8.779354 ATTTACCTCTGCTTTCTAACTTAGTG 57.221 34.615 0.00 0.00 0.00 2.74
2399 6511 4.570930 ACCTCTGCTTTCTAACTTAGTGC 58.429 43.478 0.00 1.39 0.00 4.40
2400 6512 4.040461 ACCTCTGCTTTCTAACTTAGTGCA 59.960 41.667 10.83 10.83 0.00 4.57
2401 6513 4.629200 CCTCTGCTTTCTAACTTAGTGCAG 59.371 45.833 21.41 21.41 41.69 4.41
2407 6520 7.193595 TGCTTTCTAACTTAGTGCAGTTTTTC 58.806 34.615 0.00 0.00 38.07 2.29
2413 6526 8.204836 TCTAACTTAGTGCAGTTTTTCTTCTCT 58.795 33.333 0.00 0.00 38.07 3.10
2436 6549 7.993101 TCTCATTTCTTAGATTTGATGCCAAG 58.007 34.615 0.00 0.00 33.23 3.61
2499 6612 5.336690 CGTTGGTGATTCAATTGGAAGGAAT 60.337 40.000 5.42 0.00 39.30 3.01
2631 6744 4.062293 AGTTTAGCGACTACAATTGCACA 58.938 39.130 5.05 0.00 0.00 4.57
2660 6773 9.863845 GGAGTATTACAGATCTCCTTTTATAGC 57.136 37.037 0.00 0.00 42.02 2.97
2872 6985 5.298347 ACTTACTAACTTGTCCTGCTTCAC 58.702 41.667 0.00 0.00 0.00 3.18
3146 7266 4.523173 GCTAAATGGGTAATAAAGAGGCCC 59.477 45.833 0.00 0.00 39.73 5.80
3185 7305 9.456797 GTTCTTCAATTATACGTACTTTGAACG 57.543 33.333 18.24 15.33 45.64 3.95
3235 7355 7.864379 CCAACCTGCTTTATGTAATGATGATTC 59.136 37.037 0.00 0.00 0.00 2.52
3248 7370 7.814587 TGTAATGATGATTCACCGATACATCTC 59.185 37.037 0.00 0.00 38.36 2.75
3335 7457 9.528489 TTAAACAAGGGTTTCTTTATCTATGCT 57.472 29.630 0.00 0.00 43.60 3.79
3395 7517 7.052248 AGATGAAGATGACTGTTATTGATGCA 58.948 34.615 0.00 0.00 0.00 3.96
3716 7855 4.462834 TCGATATATGATCCACCTTTCGCT 59.537 41.667 0.00 0.00 0.00 4.93
3717 7856 4.564372 CGATATATGATCCACCTTTCGCTG 59.436 45.833 0.00 0.00 0.00 5.18
3796 8018 2.094417 GCGGTGCTTCTTGTATCTTGTC 59.906 50.000 0.00 0.00 0.00 3.18
3943 8202 9.613428 CATAACTAGAGTAATCCATGTTTTCCA 57.387 33.333 0.00 0.00 0.00 3.53
3950 8209 6.064717 AGTAATCCATGTTTTCCATAGAGGC 58.935 40.000 0.00 0.00 37.29 4.70
4075 8334 1.032014 GTTCTTGGGAGCAGCACAAA 58.968 50.000 0.00 0.00 39.94 2.83
4083 8342 1.032014 GAGCAGCACAAAACCCAAGA 58.968 50.000 0.00 0.00 0.00 3.02
4091 8350 1.133199 ACAAAACCCAAGATGCCTGGA 60.133 47.619 0.00 0.00 0.00 3.86
4275 8534 3.574284 TCATGAAAAGGCAAACGATGG 57.426 42.857 0.00 0.00 0.00 3.51
4304 8566 1.260544 ATGTTTCCCTTGCTGCTTCC 58.739 50.000 0.00 0.00 0.00 3.46
4322 8584 1.134521 TCCAGAACGCTGAACACAAGT 60.135 47.619 0.00 0.00 45.17 3.16
4336 8599 8.342634 GCTGAACACAAGTTGACTAAAATTCTA 58.657 33.333 10.54 0.00 38.30 2.10
4405 8678 0.326264 GTTGGTGATCCTCCTGCACT 59.674 55.000 0.00 0.00 33.25 4.40
4411 8684 3.072184 GGTGATCCTCCTGCACTATGATT 59.928 47.826 0.00 0.00 33.25 2.57
4444 8767 1.421646 AGCTGGCTTGTAGGAAGTTGT 59.578 47.619 0.00 0.00 0.00 3.32
4466 8789 7.476540 TGTACCACTCTAATCTGTTGTATGT 57.523 36.000 0.00 0.00 0.00 2.29
4481 8804 3.165071 TGTATGTTGAGAGGAGAGTGCA 58.835 45.455 0.00 0.00 0.00 4.57
4513 8836 6.873605 AGCAAAATTAAAGAAAGGCATACCAC 59.126 34.615 0.00 0.00 39.06 4.16
4626 8968 0.183492 GCTGCTGTCATATTGGGGGA 59.817 55.000 0.00 0.00 0.00 4.81
4630 8972 3.119319 TGCTGTCATATTGGGGGAGTTA 58.881 45.455 0.00 0.00 0.00 2.24
4714 9056 2.988493 CAGTTGATTTGCACATTTCGGG 59.012 45.455 0.00 0.00 0.00 5.14
4719 9061 2.990066 TTTGCACATTTCGGGGTTTT 57.010 40.000 0.00 0.00 0.00 2.43
4802 9144 8.821686 TCTGGGATGACATTGTAAAATGTATT 57.178 30.769 11.35 2.23 42.92 1.89
4829 9171 6.502136 TTCATGGCAATTTATGTTGTCGTA 57.498 33.333 0.00 0.00 36.51 3.43
4882 9225 3.392882 TCACGTACTACTCTCGTCACAA 58.607 45.455 0.00 0.00 35.62 3.33
4912 9255 8.333908 GCATAACTTTGAAGTACTGAGATGATG 58.666 37.037 0.00 0.00 38.57 3.07
4922 9265 4.207891 ACTGAGATGATGCGGTACTTTT 57.792 40.909 0.00 0.00 0.00 2.27
4981 9327 7.661847 CCTTATATTTGTCCCTTATCCTCACAC 59.338 40.741 0.00 0.00 0.00 3.82
4990 9336 4.069304 CCTTATCCTCACACGGTTTTCAA 58.931 43.478 0.00 0.00 0.00 2.69
5008 9354 2.202932 CCATCCCTCTCAACCGCG 60.203 66.667 0.00 0.00 0.00 6.46
5032 9378 4.584394 CAACGCCTATTTATCACGGTTTC 58.416 43.478 0.00 0.00 0.00 2.78
5035 9381 3.739300 CGCCTATTTATCACGGTTTCGAT 59.261 43.478 0.00 0.00 40.11 3.59
5067 9414 4.560856 GTTTGCCGCGCCACAACA 62.561 61.111 9.09 0.00 0.00 3.33
5079 9426 1.808411 CCACAACACAGCCGTTAGAT 58.192 50.000 0.00 0.00 0.00 1.98
5084 9431 1.014044 ACACAGCCGTTAGATGCGTG 61.014 55.000 0.00 0.00 37.72 5.34
5085 9432 0.735978 CACAGCCGTTAGATGCGTGA 60.736 55.000 0.00 0.00 35.52 4.35
5086 9433 0.037697 ACAGCCGTTAGATGCGTGAA 60.038 50.000 0.00 0.00 0.00 3.18
5087 9434 1.290203 CAGCCGTTAGATGCGTGAAT 58.710 50.000 0.00 0.00 0.00 2.57
5088 9435 2.159156 ACAGCCGTTAGATGCGTGAATA 60.159 45.455 0.00 0.00 0.00 1.75
5089 9436 2.863740 CAGCCGTTAGATGCGTGAATAA 59.136 45.455 0.00 0.00 0.00 1.40
5090 9437 3.494626 CAGCCGTTAGATGCGTGAATAAT 59.505 43.478 0.00 0.00 0.00 1.28
5091 9438 3.494626 AGCCGTTAGATGCGTGAATAATG 59.505 43.478 0.00 0.00 0.00 1.90
5092 9439 3.493129 GCCGTTAGATGCGTGAATAATGA 59.507 43.478 0.00 0.00 0.00 2.57
5093 9440 4.376413 GCCGTTAGATGCGTGAATAATGAG 60.376 45.833 0.00 0.00 0.00 2.90
5094 9441 4.745125 CCGTTAGATGCGTGAATAATGAGT 59.255 41.667 0.00 0.00 0.00 3.41
5095 9442 5.918576 CCGTTAGATGCGTGAATAATGAGTA 59.081 40.000 0.00 0.00 0.00 2.59
5096 9443 6.088217 CCGTTAGATGCGTGAATAATGAGTAG 59.912 42.308 0.00 0.00 0.00 2.57
5097 9444 6.856426 CGTTAGATGCGTGAATAATGAGTAGA 59.144 38.462 0.00 0.00 0.00 2.59
5098 9445 7.060059 CGTTAGATGCGTGAATAATGAGTAGAG 59.940 40.741 0.00 0.00 0.00 2.43
5099 9446 6.641169 AGATGCGTGAATAATGAGTAGAGA 57.359 37.500 0.00 0.00 0.00 3.10
5100 9447 6.676950 AGATGCGTGAATAATGAGTAGAGAG 58.323 40.000 0.00 0.00 0.00 3.20
5101 9448 5.836821 TGCGTGAATAATGAGTAGAGAGT 57.163 39.130 0.00 0.00 0.00 3.24
5102 9449 5.822278 TGCGTGAATAATGAGTAGAGAGTC 58.178 41.667 0.00 0.00 0.00 3.36
5103 9450 5.357032 TGCGTGAATAATGAGTAGAGAGTCA 59.643 40.000 0.00 0.00 39.38 3.41
5104 9451 6.127730 TGCGTGAATAATGAGTAGAGAGTCAA 60.128 38.462 0.00 0.00 38.53 3.18
5105 9452 6.752351 GCGTGAATAATGAGTAGAGAGTCAAA 59.248 38.462 0.00 0.00 38.53 2.69
5106 9453 7.275779 GCGTGAATAATGAGTAGAGAGTCAAAA 59.724 37.037 0.00 0.00 38.53 2.44
5107 9454 9.307121 CGTGAATAATGAGTAGAGAGTCAAAAT 57.693 33.333 0.00 0.00 38.53 1.82
5114 9461 8.693120 ATGAGTAGAGAGTCAAAATATACCGA 57.307 34.615 0.00 0.00 38.53 4.69
5115 9462 8.515695 TGAGTAGAGAGTCAAAATATACCGAA 57.484 34.615 0.00 0.00 31.80 4.30
5116 9463 8.963725 TGAGTAGAGAGTCAAAATATACCGAAA 58.036 33.333 0.00 0.00 31.80 3.46
5117 9464 9.798994 GAGTAGAGAGTCAAAATATACCGAAAA 57.201 33.333 0.00 0.00 0.00 2.29
5118 9465 9.583765 AGTAGAGAGTCAAAATATACCGAAAAC 57.416 33.333 0.00 0.00 0.00 2.43
5119 9466 9.362539 GTAGAGAGTCAAAATATACCGAAAACA 57.637 33.333 0.00 0.00 0.00 2.83
5121 9468 8.883731 AGAGAGTCAAAATATACCGAAAACATG 58.116 33.333 0.00 0.00 0.00 3.21
5122 9469 8.786826 AGAGTCAAAATATACCGAAAACATGA 57.213 30.769 0.00 0.00 0.00 3.07
5123 9470 9.226606 AGAGTCAAAATATACCGAAAACATGAA 57.773 29.630 0.00 0.00 0.00 2.57
5124 9471 9.834628 GAGTCAAAATATACCGAAAACATGAAA 57.165 29.630 0.00 0.00 0.00 2.69
5135 9482 8.797266 ACCGAAAACATGAAAAATAAGAAGAC 57.203 30.769 0.00 0.00 0.00 3.01
5136 9483 8.410141 ACCGAAAACATGAAAAATAAGAAGACA 58.590 29.630 0.00 0.00 0.00 3.41
5137 9484 9.243637 CCGAAAACATGAAAAATAAGAAGACAA 57.756 29.630 0.00 0.00 0.00 3.18
5158 9505 9.249457 AGACAAGATAAATATATGTCACACACG 57.751 33.333 15.54 0.00 42.12 4.49
5159 9506 8.942338 ACAAGATAAATATATGTCACACACGT 57.058 30.769 0.00 0.00 0.00 4.49
5160 9507 8.817100 ACAAGATAAATATATGTCACACACGTG 58.183 33.333 15.48 15.48 45.08 4.49
5161 9508 8.817100 CAAGATAAATATATGTCACACACGTGT 58.183 33.333 17.22 17.22 46.17 4.49
5172 9519 2.892373 CACACGTGTGTCTTGTTTGT 57.108 45.000 35.03 0.46 42.83 2.83
5173 9520 2.769376 CACACGTGTGTCTTGTTTGTC 58.231 47.619 35.03 0.00 42.83 3.18
5174 9521 2.158645 CACACGTGTGTCTTGTTTGTCA 59.841 45.455 35.03 0.00 42.83 3.58
5175 9522 2.158841 ACACGTGTGTCTTGTTTGTCAC 59.841 45.455 22.71 0.00 40.24 3.67
5176 9523 2.071604 CGTGTGTCTTGTTTGTCACG 57.928 50.000 0.00 0.00 41.40 4.35
5178 9525 3.304382 GTGTGTCTTGTTTGTCACGAG 57.696 47.619 0.00 0.00 38.20 4.18
5179 9526 2.030457 GTGTGTCTTGTTTGTCACGAGG 59.970 50.000 0.00 0.00 37.49 4.63
5180 9527 1.003866 GTGTCTTGTTTGTCACGAGGC 60.004 52.381 0.00 0.00 41.51 4.70
5181 9528 1.295792 GTCTTGTTTGTCACGAGGCA 58.704 50.000 0.00 0.00 40.88 4.75
5182 9529 1.873591 GTCTTGTTTGTCACGAGGCAT 59.126 47.619 0.00 0.00 40.88 4.40
5183 9530 1.872952 TCTTGTTTGTCACGAGGCATG 59.127 47.619 0.00 0.00 37.49 4.06
5184 9531 1.872952 CTTGTTTGTCACGAGGCATGA 59.127 47.619 0.00 0.00 33.51 3.07
5185 9532 1.960417 TGTTTGTCACGAGGCATGAA 58.040 45.000 0.00 0.00 0.00 2.57
5186 9533 2.293170 TGTTTGTCACGAGGCATGAAA 58.707 42.857 0.00 0.00 0.00 2.69
5187 9534 2.685388 TGTTTGTCACGAGGCATGAAAA 59.315 40.909 0.00 0.00 0.00 2.29
5188 9535 3.129462 TGTTTGTCACGAGGCATGAAAAA 59.871 39.130 0.00 0.00 32.08 1.94
5215 9562 8.856490 TTAGAAAGAAAATGCAACAAGAGAAC 57.144 30.769 0.00 0.00 0.00 3.01
5216 9563 7.105241 AGAAAGAAAATGCAACAAGAGAACT 57.895 32.000 0.00 0.00 0.00 3.01
5217 9564 7.550712 AGAAAGAAAATGCAACAAGAGAACTT 58.449 30.769 0.00 0.00 36.73 2.66
5218 9565 7.704047 AGAAAGAAAATGCAACAAGAGAACTTC 59.296 33.333 0.00 0.00 33.70 3.01
5219 9566 5.836347 AGAAAATGCAACAAGAGAACTTCC 58.164 37.500 0.00 0.00 33.70 3.46
5220 9567 4.590850 AAATGCAACAAGAGAACTTCCC 57.409 40.909 0.00 0.00 33.70 3.97
5221 9568 2.727123 TGCAACAAGAGAACTTCCCA 57.273 45.000 0.00 0.00 33.70 4.37
5222 9569 2.575532 TGCAACAAGAGAACTTCCCAG 58.424 47.619 0.00 0.00 33.70 4.45
5223 9570 2.172505 TGCAACAAGAGAACTTCCCAGA 59.827 45.455 0.00 0.00 33.70 3.86
5224 9571 3.214328 GCAACAAGAGAACTTCCCAGAA 58.786 45.455 0.00 0.00 33.70 3.02
5225 9572 3.251972 GCAACAAGAGAACTTCCCAGAAG 59.748 47.826 2.83 2.83 33.70 2.85
5226 9573 3.778954 ACAAGAGAACTTCCCAGAAGG 57.221 47.619 9.05 0.00 33.70 3.46
5227 9574 3.049344 ACAAGAGAACTTCCCAGAAGGT 58.951 45.455 9.05 1.75 36.75 3.50
5228 9575 3.071747 ACAAGAGAACTTCCCAGAAGGTC 59.928 47.826 13.35 13.35 36.75 3.85
5229 9576 2.977808 AGAGAACTTCCCAGAAGGTCA 58.022 47.619 21.12 0.00 36.47 4.02
5230 9577 2.635427 AGAGAACTTCCCAGAAGGTCAC 59.365 50.000 21.12 15.92 36.47 3.67
5231 9578 1.700186 AGAACTTCCCAGAAGGTCACC 59.300 52.381 21.12 0.00 36.47 4.02
5232 9579 0.771755 AACTTCCCAGAAGGTCACCC 59.228 55.000 9.05 0.00 36.75 4.61
5233 9580 0.401395 ACTTCCCAGAAGGTCACCCA 60.401 55.000 9.05 0.00 36.75 4.51
5234 9581 0.995024 CTTCCCAGAAGGTCACCCAT 59.005 55.000 0.00 0.00 36.75 4.00
5235 9582 0.991920 TTCCCAGAAGGTCACCCATC 59.008 55.000 0.00 0.00 36.75 3.51
5236 9583 0.914417 TCCCAGAAGGTCACCCATCC 60.914 60.000 0.00 0.00 36.75 3.51
5237 9584 1.207488 CCCAGAAGGTCACCCATCCA 61.207 60.000 0.00 0.00 0.00 3.41
5238 9585 0.698238 CCAGAAGGTCACCCATCCAA 59.302 55.000 0.00 0.00 0.00 3.53
5239 9586 1.075374 CCAGAAGGTCACCCATCCAAA 59.925 52.381 0.00 0.00 0.00 3.28
5240 9587 2.291800 CCAGAAGGTCACCCATCCAAAT 60.292 50.000 0.00 0.00 0.00 2.32
5241 9588 3.053693 CCAGAAGGTCACCCATCCAAATA 60.054 47.826 0.00 0.00 0.00 1.40
5242 9589 3.947834 CAGAAGGTCACCCATCCAAATAC 59.052 47.826 0.00 0.00 0.00 1.89
5243 9590 3.852578 AGAAGGTCACCCATCCAAATACT 59.147 43.478 0.00 0.00 0.00 2.12
5244 9591 5.036916 AGAAGGTCACCCATCCAAATACTA 58.963 41.667 0.00 0.00 0.00 1.82
5245 9592 5.491078 AGAAGGTCACCCATCCAAATACTAA 59.509 40.000 0.00 0.00 0.00 2.24
5246 9593 5.994416 AGGTCACCCATCCAAATACTAAT 57.006 39.130 0.00 0.00 0.00 1.73
5247 9594 5.941788 AGGTCACCCATCCAAATACTAATC 58.058 41.667 0.00 0.00 0.00 1.75
5248 9595 5.672194 AGGTCACCCATCCAAATACTAATCT 59.328 40.000 0.00 0.00 0.00 2.40
5249 9596 6.160459 AGGTCACCCATCCAAATACTAATCTT 59.840 38.462 0.00 0.00 0.00 2.40
5250 9597 6.486993 GGTCACCCATCCAAATACTAATCTTC 59.513 42.308 0.00 0.00 0.00 2.87
5251 9598 6.486993 GTCACCCATCCAAATACTAATCTTCC 59.513 42.308 0.00 0.00 0.00 3.46
5252 9599 5.770162 CACCCATCCAAATACTAATCTTCCC 59.230 44.000 0.00 0.00 0.00 3.97
5253 9600 5.162980 ACCCATCCAAATACTAATCTTCCCC 60.163 44.000 0.00 0.00 0.00 4.81
5254 9601 5.162991 CCCATCCAAATACTAATCTTCCCCA 60.163 44.000 0.00 0.00 0.00 4.96
5255 9602 6.372931 CCATCCAAATACTAATCTTCCCCAA 58.627 40.000 0.00 0.00 0.00 4.12
5256 9603 6.491403 CCATCCAAATACTAATCTTCCCCAAG 59.509 42.308 0.00 0.00 0.00 3.61
5257 9604 5.445964 TCCAAATACTAATCTTCCCCAAGC 58.554 41.667 0.00 0.00 0.00 4.01
5258 9605 5.044476 TCCAAATACTAATCTTCCCCAAGCA 60.044 40.000 0.00 0.00 0.00 3.91
5259 9606 5.067805 CCAAATACTAATCTTCCCCAAGCAC 59.932 44.000 0.00 0.00 0.00 4.40
5260 9607 2.403252 ACTAATCTTCCCCAAGCACG 57.597 50.000 0.00 0.00 0.00 5.34
5261 9608 1.017387 CTAATCTTCCCCAAGCACGC 58.983 55.000 0.00 0.00 0.00 5.34
5262 9609 0.618458 TAATCTTCCCCAAGCACGCT 59.382 50.000 0.00 0.00 0.00 5.07
5263 9610 0.251341 AATCTTCCCCAAGCACGCTT 60.251 50.000 0.00 0.00 36.60 4.68
5264 9611 0.618458 ATCTTCCCCAAGCACGCTTA 59.382 50.000 3.53 0.00 34.50 3.09
5265 9612 0.398696 TCTTCCCCAAGCACGCTTAA 59.601 50.000 3.53 0.00 34.50 1.85
5266 9613 0.521735 CTTCCCCAAGCACGCTTAAC 59.478 55.000 3.53 0.00 34.50 2.01
5267 9614 0.109723 TTCCCCAAGCACGCTTAACT 59.890 50.000 3.53 0.00 34.50 2.24
5268 9615 0.109723 TCCCCAAGCACGCTTAACTT 59.890 50.000 3.53 0.00 34.50 2.66
5269 9616 0.958822 CCCCAAGCACGCTTAACTTT 59.041 50.000 3.53 0.00 34.50 2.66
5270 9617 1.335872 CCCCAAGCACGCTTAACTTTG 60.336 52.381 3.53 0.00 34.50 2.77
5271 9618 1.606668 CCCAAGCACGCTTAACTTTGA 59.393 47.619 3.53 0.00 34.50 2.69
5272 9619 2.034053 CCCAAGCACGCTTAACTTTGAA 59.966 45.455 3.53 0.00 34.50 2.69
5273 9620 3.490078 CCCAAGCACGCTTAACTTTGAAA 60.490 43.478 3.53 0.00 34.50 2.69
5274 9621 4.298332 CCAAGCACGCTTAACTTTGAAAT 58.702 39.130 3.53 0.00 34.50 2.17
5275 9622 4.744631 CCAAGCACGCTTAACTTTGAAATT 59.255 37.500 3.53 0.00 34.50 1.82
5276 9623 5.234116 CCAAGCACGCTTAACTTTGAAATTT 59.766 36.000 3.53 0.00 34.50 1.82
5277 9624 6.238076 CCAAGCACGCTTAACTTTGAAATTTT 60.238 34.615 3.53 0.00 34.50 1.82
5278 9625 7.043059 CCAAGCACGCTTAACTTTGAAATTTTA 60.043 33.333 3.53 0.00 34.50 1.52
5279 9626 7.995463 AGCACGCTTAACTTTGAAATTTTAA 57.005 28.000 0.00 0.00 0.00 1.52
5280 9627 8.587952 AGCACGCTTAACTTTGAAATTTTAAT 57.412 26.923 0.00 0.00 0.00 1.40
5281 9628 8.487176 AGCACGCTTAACTTTGAAATTTTAATG 58.513 29.630 6.94 6.94 0.00 1.90
5282 9629 7.739911 GCACGCTTAACTTTGAAATTTTAATGG 59.260 33.333 11.62 4.78 0.00 3.16
5283 9630 8.220434 CACGCTTAACTTTGAAATTTTAATGGG 58.780 33.333 11.62 2.86 0.00 4.00
5284 9631 8.145122 ACGCTTAACTTTGAAATTTTAATGGGA 58.855 29.630 11.62 0.00 0.00 4.37
5285 9632 9.150348 CGCTTAACTTTGAAATTTTAATGGGAT 57.850 29.630 11.62 2.96 0.00 3.85
5288 9635 9.646427 TTAACTTTGAAATTTTAATGGGATCCG 57.354 29.630 5.45 0.00 0.00 4.18
5289 9636 7.239763 ACTTTGAAATTTTAATGGGATCCGT 57.760 32.000 5.45 0.00 0.00 4.69
5290 9637 7.676004 ACTTTGAAATTTTAATGGGATCCGTT 58.324 30.769 5.45 5.96 36.61 4.44
5291 9638 7.602265 ACTTTGAAATTTTAATGGGATCCGTTG 59.398 33.333 5.45 0.00 34.27 4.10
5292 9639 5.415221 TGAAATTTTAATGGGATCCGTTGC 58.585 37.500 5.45 0.00 34.27 4.17
5293 9640 5.186797 TGAAATTTTAATGGGATCCGTTGCT 59.813 36.000 5.45 0.00 34.27 3.91
5294 9641 5.675684 AATTTTAATGGGATCCGTTGCTT 57.324 34.783 5.45 0.00 34.27 3.91
5295 9642 4.712122 TTTTAATGGGATCCGTTGCTTC 57.288 40.909 5.45 0.00 34.27 3.86
5296 9643 3.358111 TTAATGGGATCCGTTGCTTCA 57.642 42.857 5.45 0.00 34.27 3.02
5297 9644 1.755179 AATGGGATCCGTTGCTTCAG 58.245 50.000 5.45 0.00 30.69 3.02
5298 9645 0.620556 ATGGGATCCGTTGCTTCAGT 59.379 50.000 5.45 0.00 0.00 3.41
5299 9646 0.321564 TGGGATCCGTTGCTTCAGTG 60.322 55.000 5.45 0.00 0.00 3.66
5300 9647 1.648467 GGGATCCGTTGCTTCAGTGC 61.648 60.000 5.45 0.00 0.00 4.40
5301 9648 0.674895 GGATCCGTTGCTTCAGTGCT 60.675 55.000 0.00 0.00 0.00 4.40
5302 9649 1.405526 GGATCCGTTGCTTCAGTGCTA 60.406 52.381 0.00 0.00 0.00 3.49
5303 9650 1.929836 GATCCGTTGCTTCAGTGCTAG 59.070 52.381 0.00 0.00 0.00 3.42
5304 9651 0.679505 TCCGTTGCTTCAGTGCTAGT 59.320 50.000 0.00 0.00 0.00 2.57
5305 9652 1.890489 TCCGTTGCTTCAGTGCTAGTA 59.110 47.619 0.00 0.00 0.00 1.82
5306 9653 2.496070 TCCGTTGCTTCAGTGCTAGTAT 59.504 45.455 0.00 0.00 0.00 2.12
5307 9654 2.604914 CCGTTGCTTCAGTGCTAGTATG 59.395 50.000 0.00 0.00 0.00 2.39
5308 9655 3.511699 CGTTGCTTCAGTGCTAGTATGA 58.488 45.455 0.00 0.00 0.00 2.15
5309 9656 4.115516 CGTTGCTTCAGTGCTAGTATGAT 58.884 43.478 0.00 0.00 0.00 2.45
5310 9657 4.208047 CGTTGCTTCAGTGCTAGTATGATC 59.792 45.833 0.00 0.00 0.00 2.92
5311 9658 3.969899 TGCTTCAGTGCTAGTATGATCG 58.030 45.455 0.00 0.00 0.00 3.69
5312 9659 2.728839 GCTTCAGTGCTAGTATGATCGC 59.271 50.000 0.00 0.00 0.00 4.58
5313 9660 3.551863 GCTTCAGTGCTAGTATGATCGCT 60.552 47.826 0.00 0.00 0.00 4.93
5314 9661 4.615949 CTTCAGTGCTAGTATGATCGCTT 58.384 43.478 0.00 0.00 0.00 4.68
5315 9662 4.230314 TCAGTGCTAGTATGATCGCTTC 57.770 45.455 0.00 0.00 0.00 3.86
5316 9663 3.004839 TCAGTGCTAGTATGATCGCTTCC 59.995 47.826 0.00 0.00 0.00 3.46
5317 9664 2.959030 AGTGCTAGTATGATCGCTTCCA 59.041 45.455 0.00 0.00 0.00 3.53
5318 9665 3.384789 AGTGCTAGTATGATCGCTTCCAA 59.615 43.478 0.00 0.00 0.00 3.53
5319 9666 3.491267 GTGCTAGTATGATCGCTTCCAAC 59.509 47.826 0.00 0.00 0.00 3.77
5320 9667 3.132111 TGCTAGTATGATCGCTTCCAACA 59.868 43.478 0.00 0.00 0.00 3.33
5321 9668 4.202253 TGCTAGTATGATCGCTTCCAACAT 60.202 41.667 0.00 0.00 0.00 2.71
5322 9669 4.151335 GCTAGTATGATCGCTTCCAACATG 59.849 45.833 0.00 0.00 0.00 3.21
5323 9670 4.142609 AGTATGATCGCTTCCAACATGT 57.857 40.909 0.00 0.00 0.00 3.21
5324 9671 4.517285 AGTATGATCGCTTCCAACATGTT 58.483 39.130 4.92 4.92 0.00 2.71
5325 9672 5.670485 AGTATGATCGCTTCCAACATGTTA 58.330 37.500 11.53 0.00 0.00 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 7.148606 CCATTCAAAAACATGCGTATGACATTT 60.149 33.333 20.86 13.93 37.73 2.32
52 54 5.401033 TTCAAACCATTCAAAAACATGCG 57.599 34.783 0.00 0.00 0.00 4.73
86 88 2.053627 GACAGAAAATGTTGGCGCAAG 58.946 47.619 10.83 0.00 44.17 4.01
87 89 1.269517 GGACAGAAAATGTTGGCGCAA 60.270 47.619 10.83 0.00 44.17 4.85
88 90 0.313672 GGACAGAAAATGTTGGCGCA 59.686 50.000 10.83 0.00 44.17 6.09
89 91 0.313672 TGGACAGAAAATGTTGGCGC 59.686 50.000 0.00 0.00 44.17 6.53
91 93 3.993920 ACAATGGACAGAAAATGTTGGC 58.006 40.909 0.00 0.00 44.17 4.52
217 224 9.755804 TCATGTAGTGCAAAAATAATGTTTGAA 57.244 25.926 4.50 0.00 38.05 2.69
246 253 8.408043 AGATGTTCATCACACATTTAAAAGGA 57.592 30.769 14.05 0.00 38.61 3.36
260 267 1.372582 GCGCTTGGAGATGTTCATCA 58.627 50.000 14.05 0.00 0.00 3.07
261 268 0.659957 GGCGCTTGGAGATGTTCATC 59.340 55.000 7.64 4.80 0.00 2.92
265 272 3.127533 GCGGCGCTTGGAGATGTT 61.128 61.111 26.86 0.00 0.00 2.71
352 1404 1.604604 GTGTTCTTTAGGGCACTGCA 58.395 50.000 0.00 0.00 0.00 4.41
354 1406 1.156736 CCGTGTTCTTTAGGGCACTG 58.843 55.000 0.00 0.00 0.00 3.66
358 1410 0.605589 AGCACCGTGTTCTTTAGGGC 60.606 55.000 0.00 0.00 0.00 5.19
362 1414 0.759959 TCCCAGCACCGTGTTCTTTA 59.240 50.000 0.00 0.00 0.00 1.85
390 1442 4.459337 ACCACGAAAGATTCTTTTCCCATC 59.541 41.667 12.73 0.00 34.34 3.51
392 1444 3.568007 CACCACGAAAGATTCTTTTCCCA 59.432 43.478 12.73 0.00 34.34 4.37
464 1516 5.045213 TGCCAAGGATTAGAACCACTGAATA 60.045 40.000 0.00 0.00 0.00 1.75
476 1528 4.192317 GGAGTAGTGTTGCCAAGGATTAG 58.808 47.826 0.00 0.00 0.00 1.73
538 1620 5.347620 TTCTAGGTTGCTATCGCCTTTTA 57.652 39.130 0.00 0.00 34.07 1.52
616 1729 3.681835 GGACGTGACCGGTGCTCT 61.682 66.667 14.63 0.00 38.78 4.09
634 1747 3.041940 GGGCCACACGTTGACGAG 61.042 66.667 10.87 4.92 43.02 4.18
757 1889 1.471676 GCCGACTCCAGTCCAGTAATG 60.472 57.143 1.01 0.00 41.86 1.90
761 1893 1.608717 GATGCCGACTCCAGTCCAGT 61.609 60.000 1.01 0.00 41.86 4.00
762 1894 1.142748 GATGCCGACTCCAGTCCAG 59.857 63.158 1.01 0.00 41.86 3.86
763 1895 1.305297 AGATGCCGACTCCAGTCCA 60.305 57.895 1.01 0.00 41.86 4.02
764 1896 1.439644 GAGATGCCGACTCCAGTCC 59.560 63.158 1.01 0.00 41.86 3.85
765 1897 1.064946 CGAGATGCCGACTCCAGTC 59.935 63.158 0.00 0.00 41.47 3.51
812 1963 2.567497 CCCCATTCATCGCCATGGC 61.567 63.158 27.67 27.67 39.02 4.40
813 1964 0.110295 TACCCCATTCATCGCCATGG 59.890 55.000 7.63 7.63 39.92 3.66
814 1965 1.527034 CTACCCCATTCATCGCCATG 58.473 55.000 0.00 0.00 0.00 3.66
815 1966 0.250901 GCTACCCCATTCATCGCCAT 60.251 55.000 0.00 0.00 0.00 4.40
816 1967 1.148273 GCTACCCCATTCATCGCCA 59.852 57.895 0.00 0.00 0.00 5.69
817 1968 1.600916 GGCTACCCCATTCATCGCC 60.601 63.158 0.00 0.00 0.00 5.54
818 1969 1.961277 CGGCTACCCCATTCATCGC 60.961 63.158 0.00 0.00 0.00 4.58
822 1973 2.994699 CCACGGCTACCCCATTCA 59.005 61.111 0.00 0.00 0.00 2.57
840 2003 1.673993 TACACTTGGGCATGCACCG 60.674 57.895 19.33 11.29 0.00 4.94
857 2020 0.826256 AGCGTGTGGACTGTGGAGTA 60.826 55.000 0.00 0.00 30.16 2.59
890 2069 6.614162 GCAAGCGAATAGAATTTGTGTTTGTG 60.614 38.462 0.00 0.00 0.00 3.33
932 2116 4.452455 ACAAAGCTGAAGTTTATGAGACGG 59.548 41.667 0.00 0.00 0.00 4.79
987 2214 3.774336 ACCATCGCCCCTCCCCTA 61.774 66.667 0.00 0.00 0.00 3.53
1270 2535 2.716017 CGCACTCCTCCTCCTCCAC 61.716 68.421 0.00 0.00 0.00 4.02
1271 2536 2.363018 CGCACTCCTCCTCCTCCA 60.363 66.667 0.00 0.00 0.00 3.86
1272 2537 2.043852 TCGCACTCCTCCTCCTCC 60.044 66.667 0.00 0.00 0.00 4.30
1577 2922 4.222124 AGGTTCTTGTGAGTTGTGAGTT 57.778 40.909 0.00 0.00 0.00 3.01
1579 2924 6.677781 TTTAAGGTTCTTGTGAGTTGTGAG 57.322 37.500 0.00 0.00 0.00 3.51
1580 2925 7.338196 TGAATTTAAGGTTCTTGTGAGTTGTGA 59.662 33.333 4.85 0.00 0.00 3.58
1581 2926 7.432252 GTGAATTTAAGGTTCTTGTGAGTTGTG 59.568 37.037 4.85 0.00 0.00 3.33
1582 2927 7.339466 AGTGAATTTAAGGTTCTTGTGAGTTGT 59.661 33.333 4.85 0.00 0.00 3.32
1583 2928 7.707104 AGTGAATTTAAGGTTCTTGTGAGTTG 58.293 34.615 4.85 0.00 0.00 3.16
1606 2951 8.731275 TGTTGAAATTCATGTCGGATAATAGT 57.269 30.769 0.00 0.00 0.00 2.12
1607 2952 9.603298 CATGTTGAAATTCATGTCGGATAATAG 57.397 33.333 0.00 0.00 37.31 1.73
1631 2976 1.414181 CAACTCCCCATAGAGCGACAT 59.586 52.381 0.00 0.00 37.39 3.06
1634 2979 1.860641 TTCAACTCCCCATAGAGCGA 58.139 50.000 0.00 0.00 37.39 4.93
1664 3009 4.955811 TGGAACTTGTGAGTACAGATGT 57.044 40.909 0.00 0.00 38.23 3.06
1668 3013 4.641396 TGGATTGGAACTTGTGAGTACAG 58.359 43.478 0.00 0.00 38.23 2.74
1695 3040 0.762418 ATCCACGTGACCAAGAACCA 59.238 50.000 19.30 0.00 0.00 3.67
1762 3122 9.312904 TCACCATCCTAATTTCTTCTTTTTGAT 57.687 29.630 0.00 0.00 0.00 2.57
1798 3158 6.570058 GCTATAGATTGCGTCACGTTTATTTG 59.430 38.462 3.21 0.00 0.00 2.32
1811 3171 5.179929 TCCATGTTGATTGCTATAGATTGCG 59.820 40.000 3.21 0.00 0.00 4.85
1867 3820 6.324819 CAACATCATGTCAGACCCAAATAAC 58.675 40.000 0.00 0.00 0.00 1.89
1894 3848 3.383761 CAACCACAATGGCAAGAAAGAC 58.616 45.455 0.00 0.00 42.67 3.01
1907 3861 2.757868 CACTTCCAAGTTCCAACCACAA 59.242 45.455 0.00 0.00 37.08 3.33
1908 3862 2.374184 CACTTCCAAGTTCCAACCACA 58.626 47.619 0.00 0.00 37.08 4.17
1909 3863 1.681264 CCACTTCCAAGTTCCAACCAC 59.319 52.381 0.00 0.00 37.08 4.16
1910 3864 1.286553 ACCACTTCCAAGTTCCAACCA 59.713 47.619 0.00 0.00 37.08 3.67
1911 3865 1.954382 GACCACTTCCAAGTTCCAACC 59.046 52.381 0.00 0.00 37.08 3.77
1913 3867 2.241176 ACAGACCACTTCCAAGTTCCAA 59.759 45.455 0.00 0.00 37.08 3.53
1914 3868 1.843851 ACAGACCACTTCCAAGTTCCA 59.156 47.619 0.00 0.00 37.08 3.53
1915 3869 2.640316 ACAGACCACTTCCAAGTTCC 57.360 50.000 0.00 0.00 37.08 3.62
1916 3870 2.879026 GGAACAGACCACTTCCAAGTTC 59.121 50.000 0.00 0.00 37.08 3.01
1917 3871 2.509964 AGGAACAGACCACTTCCAAGTT 59.490 45.455 0.00 0.00 37.08 2.66
1918 3872 2.127708 AGGAACAGACCACTTCCAAGT 58.872 47.619 0.00 0.00 40.60 3.16
1919 3873 2.158755 ACAGGAACAGACCACTTCCAAG 60.159 50.000 0.00 0.00 36.09 3.61
1941 3895 9.219603 CAGAAATAACAGAGGACTCAACAAATA 57.780 33.333 1.75 0.00 0.00 1.40
1993 3947 4.138290 TCCTAGATTTCACGGTGCAAAAA 58.862 39.130 2.51 0.00 0.00 1.94
1994 3948 3.745799 TCCTAGATTTCACGGTGCAAAA 58.254 40.909 2.51 0.17 0.00 2.44
1995 3949 3.410631 TCCTAGATTTCACGGTGCAAA 57.589 42.857 2.51 5.82 0.00 3.68
1996 3950 3.627395 ATCCTAGATTTCACGGTGCAA 57.373 42.857 2.51 0.00 0.00 4.08
2002 3956 5.178252 CCAGCAACATATCCTAGATTTCACG 59.822 44.000 0.00 0.00 0.00 4.35
2048 4003 6.330004 TGCAGTCACATACATGAAAACATT 57.670 33.333 0.00 0.00 0.00 2.71
2049 4004 5.620654 GCTGCAGTCACATACATGAAAACAT 60.621 40.000 16.64 0.00 0.00 2.71
2060 4015 7.864108 ATAAACTAATTGCTGCAGTCACATA 57.136 32.000 16.64 8.31 0.00 2.29
2113 6175 6.573094 GCTTCACCATAAAGGCTCTTCATTTT 60.573 38.462 0.00 0.00 43.14 1.82
2118 6180 3.615155 AGCTTCACCATAAAGGCTCTTC 58.385 45.455 0.00 0.00 43.14 2.87
2171 6233 5.990668 ACGATTATTCCAAGTAAAGGCTCT 58.009 37.500 0.00 0.00 0.00 4.09
2172 6234 6.985059 ACTACGATTATTCCAAGTAAAGGCTC 59.015 38.462 0.00 0.00 0.00 4.70
2213 6310 3.661944 AGAGTTTGAGAGCAGTGACATG 58.338 45.455 0.00 0.00 0.00 3.21
2220 6328 3.976793 TTGCAAAGAGTTTGAGAGCAG 57.023 42.857 0.00 0.00 43.26 4.24
2221 6329 4.924305 ATTTGCAAAGAGTTTGAGAGCA 57.076 36.364 18.19 0.00 43.26 4.26
2222 6330 4.446719 CCAATTTGCAAAGAGTTTGAGAGC 59.553 41.667 19.83 0.00 43.26 4.09
2223 6331 5.835257 TCCAATTTGCAAAGAGTTTGAGAG 58.165 37.500 19.83 7.77 43.26 3.20
2224 6332 5.850557 TCCAATTTGCAAAGAGTTTGAGA 57.149 34.783 19.83 13.84 43.26 3.27
2225 6333 6.146673 GGATTCCAATTTGCAAAGAGTTTGAG 59.853 38.462 19.83 12.29 43.26 3.02
2260 6368 7.730364 AATACAAAGAAACTGACGATCACTT 57.270 32.000 0.00 0.00 0.00 3.16
2378 6490 4.569943 TGCACTAAGTTAGAAAGCAGAGG 58.430 43.478 16.89 0.00 31.82 3.69
2396 6508 6.733145 AGAAATGAGAGAAGAAAAACTGCAC 58.267 36.000 0.00 0.00 0.00 4.57
2398 6510 8.778358 TCTAAGAAATGAGAGAAGAAAAACTGC 58.222 33.333 0.00 0.00 0.00 4.40
2407 6520 8.344098 GGCATCAAATCTAAGAAATGAGAGAAG 58.656 37.037 0.00 0.00 0.00 2.85
2413 6526 7.707624 ACTTGGCATCAAATCTAAGAAATGA 57.292 32.000 0.00 0.00 31.77 2.57
2499 6612 2.373169 ACAAAGCAGAGACTCCCATTGA 59.627 45.455 12.75 0.00 0.00 2.57
2660 6773 3.443045 GTGCACGGCCATGAAGGG 61.443 66.667 1.12 0.00 38.09 3.95
2682 6795 3.056035 ACTTAACAACCTTAGAGGCTCCG 60.056 47.826 11.71 0.00 39.63 4.63
2872 6985 9.599322 GACACATCTACAAGAAACATTTAACAG 57.401 33.333 0.00 0.00 0.00 3.16
3051 7170 9.486497 CATGCTATCATAGTTCTGTCAAATAGT 57.514 33.333 0.00 0.00 0.00 2.12
3185 7305 7.069578 TGGGGACAAGAAATCTCATACTAGTAC 59.930 40.741 4.31 0.00 37.44 2.73
3716 7855 6.145338 TCAGTAAAATTGTAAAAACGGCCA 57.855 33.333 2.24 0.00 0.00 5.36
3717 7856 7.646446 ATTCAGTAAAATTGTAAAAACGGCC 57.354 32.000 0.00 0.00 0.00 6.13
3776 7998 3.589988 AGACAAGATACAAGAAGCACCG 58.410 45.455 0.00 0.00 0.00 4.94
3796 8018 8.522830 TCCATTATTTGCTTTTCAAGTTCCTAG 58.477 33.333 0.00 0.00 35.84 3.02
3898 8132 6.947733 AGTTATGGATCAGTCAATTTGTCCAA 59.052 34.615 9.07 0.00 39.02 3.53
3943 8202 1.739338 CTTCCAGTCGCCGCCTCTAT 61.739 60.000 0.00 0.00 0.00 1.98
3950 8209 2.125912 CCACTCTTCCAGTCGCCG 60.126 66.667 0.00 0.00 30.26 6.46
4075 8334 2.687914 GCTAATCCAGGCATCTTGGGTT 60.688 50.000 0.00 0.00 0.00 4.11
4083 8342 5.567623 CGTTCAGTATAGCTAATCCAGGCAT 60.568 44.000 0.00 0.00 0.00 4.40
4091 8350 6.095021 TCTGTGTCACGTTCAGTATAGCTAAT 59.905 38.462 0.00 0.00 0.00 1.73
4184 8443 2.646930 CAATGGCTGCAATCCTGTCTA 58.353 47.619 0.50 0.00 0.00 2.59
4275 8534 3.727726 CAAGGGAAACATTTTGGTCCAC 58.272 45.455 0.00 0.00 30.02 4.02
4292 8554 1.871772 CGTTCTGGAAGCAGCAAGG 59.128 57.895 0.00 0.00 0.00 3.61
4304 8566 2.351418 TCAACTTGTGTTCAGCGTTCTG 59.649 45.455 0.00 0.00 41.67 3.02
4322 8584 7.208064 AGCCTACCCATAGAATTTTAGTCAA 57.792 36.000 0.00 0.00 0.00 3.18
4405 8678 5.766670 CCAGCTCCTATCTTGCAAAATCATA 59.233 40.000 0.00 0.00 0.00 2.15
4411 8684 1.283029 AGCCAGCTCCTATCTTGCAAA 59.717 47.619 0.00 0.00 0.00 3.68
4444 8767 8.129496 TCAACATACAACAGATTAGAGTGGTA 57.871 34.615 0.00 0.00 0.00 3.25
4466 8789 5.728471 CTCTTATTTGCACTCTCCTCTCAA 58.272 41.667 0.00 0.00 0.00 3.02
4481 8804 9.777297 TGCCTTTCTTTAATTTTGCTCTTATTT 57.223 25.926 0.00 0.00 0.00 1.40
4626 8968 4.546829 ACATACAATCACCACGGTAACT 57.453 40.909 0.00 0.00 0.00 2.24
4630 8972 5.492895 TGAATTACATACAATCACCACGGT 58.507 37.500 0.00 0.00 0.00 4.83
4670 9012 1.834263 GGAGCCACTGAGAACATACCT 59.166 52.381 0.00 0.00 0.00 3.08
4714 9056 3.358118 TGTTCCGGATGGGATAAAAACC 58.642 45.455 4.15 0.00 46.62 3.27
4719 9061 4.243793 ACATTTGTTCCGGATGGGATAA 57.756 40.909 4.15 0.00 46.62 1.75
4790 9132 8.893219 TTGCCATGAAAACAATACATTTTACA 57.107 26.923 0.00 0.00 29.44 2.41
4802 9144 6.145209 CGACAACATAAATTGCCATGAAAACA 59.855 34.615 0.00 0.00 32.47 2.83
4829 9171 9.127277 TGTTTGGTAAAAGTACTTGCTATTCTT 57.873 29.630 9.34 0.19 0.00 2.52
4842 9184 4.202070 CGTGAATGGGTGTTTGGTAAAAGT 60.202 41.667 0.00 0.00 0.00 2.66
4849 9192 2.500229 AGTACGTGAATGGGTGTTTGG 58.500 47.619 0.00 0.00 0.00 3.28
4882 9225 7.217200 TCTCAGTACTTCAAAGTTATGCTTGT 58.783 34.615 0.00 0.00 40.37 3.16
4912 9255 0.179268 CGTACGCACAAAAGTACCGC 60.179 55.000 0.52 0.00 39.85 5.68
4955 9300 7.661847 GTGTGAGGATAAGGGACAAATATAAGG 59.338 40.741 0.00 0.00 0.00 2.69
4990 9336 2.990479 GCGGTTGAGAGGGATGGT 59.010 61.111 0.00 0.00 0.00 3.55
5051 9398 4.560856 GTGTTGTGGCGCGGCAAA 62.561 61.111 37.87 30.82 0.00 3.68
5067 9414 0.037697 TTCACGCATCTAACGGCTGT 60.038 50.000 0.00 0.00 34.00 4.40
5069 9416 2.882927 TATTCACGCATCTAACGGCT 57.117 45.000 0.00 0.00 34.00 5.52
5071 9418 4.745125 ACTCATTATTCACGCATCTAACGG 59.255 41.667 0.00 0.00 34.00 4.44
5074 9421 8.166422 TCTCTACTCATTATTCACGCATCTAA 57.834 34.615 0.00 0.00 0.00 2.10
5079 9426 5.357032 TGACTCTCTACTCATTATTCACGCA 59.643 40.000 0.00 0.00 0.00 5.24
5088 9435 9.132923 TCGGTATATTTTGACTCTCTACTCATT 57.867 33.333 0.00 0.00 0.00 2.57
5089 9436 8.693120 TCGGTATATTTTGACTCTCTACTCAT 57.307 34.615 0.00 0.00 0.00 2.90
5090 9437 8.515695 TTCGGTATATTTTGACTCTCTACTCA 57.484 34.615 0.00 0.00 0.00 3.41
5091 9438 9.798994 TTTTCGGTATATTTTGACTCTCTACTC 57.201 33.333 0.00 0.00 0.00 2.59
5092 9439 9.583765 GTTTTCGGTATATTTTGACTCTCTACT 57.416 33.333 0.00 0.00 0.00 2.57
5093 9440 9.362539 TGTTTTCGGTATATTTTGACTCTCTAC 57.637 33.333 0.00 0.00 0.00 2.59
5095 9442 8.883731 CATGTTTTCGGTATATTTTGACTCTCT 58.116 33.333 0.00 0.00 0.00 3.10
5096 9443 8.879759 TCATGTTTTCGGTATATTTTGACTCTC 58.120 33.333 0.00 0.00 0.00 3.20
5097 9444 8.786826 TCATGTTTTCGGTATATTTTGACTCT 57.213 30.769 0.00 0.00 0.00 3.24
5098 9445 9.834628 TTTCATGTTTTCGGTATATTTTGACTC 57.165 29.630 0.00 0.00 0.00 3.36
5109 9456 9.887406 GTCTTCTTATTTTTCATGTTTTCGGTA 57.113 29.630 0.00 0.00 0.00 4.02
5110 9457 8.410141 TGTCTTCTTATTTTTCATGTTTTCGGT 58.590 29.630 0.00 0.00 0.00 4.69
5111 9458 8.795786 TGTCTTCTTATTTTTCATGTTTTCGG 57.204 30.769 0.00 0.00 0.00 4.30
5132 9479 9.249457 CGTGTGTGACATATATTTATCTTGTCT 57.751 33.333 0.00 0.00 38.00 3.41
5133 9480 9.031360 ACGTGTGTGACATATATTTATCTTGTC 57.969 33.333 0.00 0.00 37.73 3.18
5134 9481 8.942338 ACGTGTGTGACATATATTTATCTTGT 57.058 30.769 0.00 0.00 0.00 3.16
5155 9502 2.769376 GTGACAAACAAGACACACGTG 58.231 47.619 15.48 15.48 34.94 4.49
5156 9503 1.392168 CGTGACAAACAAGACACACGT 59.608 47.619 0.00 0.00 43.47 4.49
5157 9504 2.071604 CGTGACAAACAAGACACACG 57.928 50.000 0.00 0.00 43.10 4.49
5158 9505 2.030457 CCTCGTGACAAACAAGACACAC 59.970 50.000 0.00 0.00 34.58 3.82
5159 9506 2.276201 CCTCGTGACAAACAAGACACA 58.724 47.619 0.00 0.00 34.58 3.72
5160 9507 1.003866 GCCTCGTGACAAACAAGACAC 60.004 52.381 0.00 0.00 33.82 3.67
5161 9508 1.295792 GCCTCGTGACAAACAAGACA 58.704 50.000 0.00 0.00 33.82 3.41
5162 9509 1.295792 TGCCTCGTGACAAACAAGAC 58.704 50.000 0.00 0.00 33.82 3.01
5163 9510 1.872952 CATGCCTCGTGACAAACAAGA 59.127 47.619 0.00 0.00 35.85 3.02
5164 9511 1.872952 TCATGCCTCGTGACAAACAAG 59.127 47.619 0.00 0.00 0.00 3.16
5165 9512 1.960417 TCATGCCTCGTGACAAACAA 58.040 45.000 0.00 0.00 0.00 2.83
5166 9513 1.960417 TTCATGCCTCGTGACAAACA 58.040 45.000 0.00 0.00 0.00 2.83
5167 9514 3.347958 TTTTCATGCCTCGTGACAAAC 57.652 42.857 0.00 0.00 0.00 2.93
5189 9536 9.468532 GTTCTCTTGTTGCATTTTCTTTCTAAT 57.531 29.630 0.00 0.00 0.00 1.73
5190 9537 8.686334 AGTTCTCTTGTTGCATTTTCTTTCTAA 58.314 29.630 0.00 0.00 0.00 2.10
5191 9538 8.225603 AGTTCTCTTGTTGCATTTTCTTTCTA 57.774 30.769 0.00 0.00 0.00 2.10
5192 9539 7.105241 AGTTCTCTTGTTGCATTTTCTTTCT 57.895 32.000 0.00 0.00 0.00 2.52
5193 9540 7.043125 GGAAGTTCTCTTGTTGCATTTTCTTTC 60.043 37.037 2.25 0.00 33.64 2.62
5194 9541 6.758416 GGAAGTTCTCTTGTTGCATTTTCTTT 59.242 34.615 2.25 0.00 33.64 2.52
5195 9542 6.276091 GGAAGTTCTCTTGTTGCATTTTCTT 58.724 36.000 2.25 0.00 33.64 2.52
5196 9543 5.221322 GGGAAGTTCTCTTGTTGCATTTTCT 60.221 40.000 2.25 0.00 33.64 2.52
5197 9544 4.984785 GGGAAGTTCTCTTGTTGCATTTTC 59.015 41.667 2.25 0.00 33.64 2.29
5198 9545 4.405358 TGGGAAGTTCTCTTGTTGCATTTT 59.595 37.500 3.98 0.00 33.64 1.82
5199 9546 3.960102 TGGGAAGTTCTCTTGTTGCATTT 59.040 39.130 3.98 0.00 33.64 2.32
5200 9547 3.565307 TGGGAAGTTCTCTTGTTGCATT 58.435 40.909 3.98 0.00 33.64 3.56
5201 9548 3.152341 CTGGGAAGTTCTCTTGTTGCAT 58.848 45.455 3.98 0.00 33.64 3.96
5202 9549 2.172505 TCTGGGAAGTTCTCTTGTTGCA 59.827 45.455 3.98 0.00 33.64 4.08
5203 9550 2.851195 TCTGGGAAGTTCTCTTGTTGC 58.149 47.619 3.98 0.00 33.64 4.17
5204 9551 3.817647 CCTTCTGGGAAGTTCTCTTGTTG 59.182 47.826 3.98 0.00 37.23 3.33
5205 9552 3.459969 ACCTTCTGGGAAGTTCTCTTGTT 59.540 43.478 3.98 0.00 38.76 2.83
5206 9553 3.049344 ACCTTCTGGGAAGTTCTCTTGT 58.951 45.455 3.98 0.00 38.76 3.16
5207 9554 3.071602 TGACCTTCTGGGAAGTTCTCTTG 59.928 47.826 3.98 0.00 38.76 3.02
5208 9555 3.071747 GTGACCTTCTGGGAAGTTCTCTT 59.928 47.826 3.98 0.00 38.76 2.85
5209 9556 2.635427 GTGACCTTCTGGGAAGTTCTCT 59.365 50.000 3.98 0.00 38.76 3.10
5210 9557 2.289756 GGTGACCTTCTGGGAAGTTCTC 60.290 54.545 2.25 0.00 38.76 2.87
5211 9558 1.700186 GGTGACCTTCTGGGAAGTTCT 59.300 52.381 2.25 0.00 38.76 3.01
5212 9559 2.186532 GGTGACCTTCTGGGAAGTTC 57.813 55.000 0.00 0.00 38.76 3.01
5226 9573 6.486993 GGAAGATTAGTATTTGGATGGGTGAC 59.513 42.308 0.00 0.00 0.00 3.67
5227 9574 6.410388 GGGAAGATTAGTATTTGGATGGGTGA 60.410 42.308 0.00 0.00 0.00 4.02
5228 9575 5.770162 GGGAAGATTAGTATTTGGATGGGTG 59.230 44.000 0.00 0.00 0.00 4.61
5229 9576 5.162980 GGGGAAGATTAGTATTTGGATGGGT 60.163 44.000 0.00 0.00 0.00 4.51
5230 9577 5.162991 TGGGGAAGATTAGTATTTGGATGGG 60.163 44.000 0.00 0.00 0.00 4.00
5231 9578 5.952387 TGGGGAAGATTAGTATTTGGATGG 58.048 41.667 0.00 0.00 0.00 3.51
5232 9579 6.015940 GCTTGGGGAAGATTAGTATTTGGATG 60.016 42.308 0.00 0.00 0.00 3.51
5233 9580 6.071320 GCTTGGGGAAGATTAGTATTTGGAT 58.929 40.000 0.00 0.00 0.00 3.41
5234 9581 5.044476 TGCTTGGGGAAGATTAGTATTTGGA 60.044 40.000 0.00 0.00 0.00 3.53
5235 9582 5.067805 GTGCTTGGGGAAGATTAGTATTTGG 59.932 44.000 0.00 0.00 0.00 3.28
5236 9583 5.220854 CGTGCTTGGGGAAGATTAGTATTTG 60.221 44.000 0.00 0.00 0.00 2.32
5237 9584 4.881850 CGTGCTTGGGGAAGATTAGTATTT 59.118 41.667 0.00 0.00 0.00 1.40
5238 9585 4.451900 CGTGCTTGGGGAAGATTAGTATT 58.548 43.478 0.00 0.00 0.00 1.89
5239 9586 3.744530 GCGTGCTTGGGGAAGATTAGTAT 60.745 47.826 0.00 0.00 0.00 2.12
5240 9587 2.419574 GCGTGCTTGGGGAAGATTAGTA 60.420 50.000 0.00 0.00 0.00 1.82
5241 9588 1.679032 GCGTGCTTGGGGAAGATTAGT 60.679 52.381 0.00 0.00 0.00 2.24
5242 9589 1.017387 GCGTGCTTGGGGAAGATTAG 58.983 55.000 0.00 0.00 0.00 1.73
5243 9590 0.618458 AGCGTGCTTGGGGAAGATTA 59.382 50.000 0.00 0.00 0.00 1.75
5244 9591 0.251341 AAGCGTGCTTGGGGAAGATT 60.251 50.000 6.25 0.00 34.60 2.40
5245 9592 0.618458 TAAGCGTGCTTGGGGAAGAT 59.382 50.000 16.98 0.00 37.47 2.40
5246 9593 0.398696 TTAAGCGTGCTTGGGGAAGA 59.601 50.000 16.98 0.00 37.47 2.87
5247 9594 0.521735 GTTAAGCGTGCTTGGGGAAG 59.478 55.000 16.98 0.00 37.47 3.46
5248 9595 0.109723 AGTTAAGCGTGCTTGGGGAA 59.890 50.000 16.98 0.52 37.47 3.97
5249 9596 0.109723 AAGTTAAGCGTGCTTGGGGA 59.890 50.000 16.98 0.00 37.47 4.81
5250 9597 0.958822 AAAGTTAAGCGTGCTTGGGG 59.041 50.000 16.98 0.00 37.47 4.96
5251 9598 1.606668 TCAAAGTTAAGCGTGCTTGGG 59.393 47.619 16.98 1.02 37.47 4.12
5252 9599 3.347958 TTCAAAGTTAAGCGTGCTTGG 57.652 42.857 16.98 0.70 37.47 3.61
5253 9600 5.888412 AATTTCAAAGTTAAGCGTGCTTG 57.112 34.783 16.98 0.04 37.47 4.01
5254 9601 6.902224 AAAATTTCAAAGTTAAGCGTGCTT 57.098 29.167 12.30 12.30 39.83 3.91
5255 9602 7.995463 TTAAAATTTCAAAGTTAAGCGTGCT 57.005 28.000 0.00 0.00 0.00 4.40
5256 9603 7.739911 CCATTAAAATTTCAAAGTTAAGCGTGC 59.260 33.333 0.00 0.00 0.00 5.34
5257 9604 8.220434 CCCATTAAAATTTCAAAGTTAAGCGTG 58.780 33.333 0.00 0.00 0.00 5.34
5258 9605 8.145122 TCCCATTAAAATTTCAAAGTTAAGCGT 58.855 29.630 0.00 0.00 0.00 5.07
5259 9606 8.527567 TCCCATTAAAATTTCAAAGTTAAGCG 57.472 30.769 0.00 0.00 0.00 4.68
5262 9609 9.646427 CGGATCCCATTAAAATTTCAAAGTTAA 57.354 29.630 6.06 0.00 0.00 2.01
5263 9610 8.808092 ACGGATCCCATTAAAATTTCAAAGTTA 58.192 29.630 6.06 0.00 0.00 2.24
5264 9611 7.676004 ACGGATCCCATTAAAATTTCAAAGTT 58.324 30.769 6.06 0.00 0.00 2.66
5265 9612 7.239763 ACGGATCCCATTAAAATTTCAAAGT 57.760 32.000 6.06 0.00 0.00 2.66
5266 9613 7.412891 GCAACGGATCCCATTAAAATTTCAAAG 60.413 37.037 6.06 0.00 0.00 2.77
5267 9614 6.370166 GCAACGGATCCCATTAAAATTTCAAA 59.630 34.615 6.06 0.00 0.00 2.69
5268 9615 5.872070 GCAACGGATCCCATTAAAATTTCAA 59.128 36.000 6.06 0.00 0.00 2.69
5269 9616 5.186797 AGCAACGGATCCCATTAAAATTTCA 59.813 36.000 6.06 0.00 0.00 2.69
5270 9617 5.660460 AGCAACGGATCCCATTAAAATTTC 58.340 37.500 6.06 0.00 0.00 2.17
5271 9618 5.675684 AGCAACGGATCCCATTAAAATTT 57.324 34.783 6.06 0.00 0.00 1.82
5272 9619 5.186797 TGAAGCAACGGATCCCATTAAAATT 59.813 36.000 6.06 0.00 0.00 1.82
5273 9620 4.709397 TGAAGCAACGGATCCCATTAAAAT 59.291 37.500 6.06 0.00 0.00 1.82
5274 9621 4.082845 TGAAGCAACGGATCCCATTAAAA 58.917 39.130 6.06 0.00 0.00 1.52
5275 9622 3.691575 TGAAGCAACGGATCCCATTAAA 58.308 40.909 6.06 0.00 0.00 1.52
5276 9623 3.278574 CTGAAGCAACGGATCCCATTAA 58.721 45.455 6.06 0.00 0.00 1.40
5277 9624 2.238646 ACTGAAGCAACGGATCCCATTA 59.761 45.455 6.06 0.00 0.00 1.90
5278 9625 1.004745 ACTGAAGCAACGGATCCCATT 59.995 47.619 6.06 0.00 0.00 3.16
5279 9626 0.620556 ACTGAAGCAACGGATCCCAT 59.379 50.000 6.06 0.00 0.00 4.00
5280 9627 0.321564 CACTGAAGCAACGGATCCCA 60.322 55.000 6.06 0.00 0.00 4.37
5281 9628 1.648467 GCACTGAAGCAACGGATCCC 61.648 60.000 6.06 0.00 0.00 3.85
5282 9629 0.674895 AGCACTGAAGCAACGGATCC 60.675 55.000 0.00 0.00 36.85 3.36
5283 9630 1.929836 CTAGCACTGAAGCAACGGATC 59.070 52.381 0.00 0.00 36.85 3.36
5284 9631 1.276421 ACTAGCACTGAAGCAACGGAT 59.724 47.619 0.00 0.00 36.85 4.18
5285 9632 0.679505 ACTAGCACTGAAGCAACGGA 59.320 50.000 0.00 0.00 36.85 4.69
5286 9633 2.363788 TACTAGCACTGAAGCAACGG 57.636 50.000 0.00 0.00 36.85 4.44
5287 9634 3.511699 TCATACTAGCACTGAAGCAACG 58.488 45.455 0.00 0.00 36.85 4.10
5288 9635 4.208047 CGATCATACTAGCACTGAAGCAAC 59.792 45.833 0.00 0.00 36.85 4.17
5289 9636 4.363138 CGATCATACTAGCACTGAAGCAA 58.637 43.478 0.00 0.00 36.85 3.91
5290 9637 3.796844 GCGATCATACTAGCACTGAAGCA 60.797 47.826 0.00 0.00 36.85 3.91
5291 9638 2.728839 GCGATCATACTAGCACTGAAGC 59.271 50.000 0.00 0.00 0.00 3.86
5292 9639 4.235939 AGCGATCATACTAGCACTGAAG 57.764 45.455 0.00 0.00 0.00 3.02
5293 9640 4.499865 GGAAGCGATCATACTAGCACTGAA 60.500 45.833 0.00 0.00 0.00 3.02
5294 9641 3.004839 GGAAGCGATCATACTAGCACTGA 59.995 47.826 0.00 0.00 0.00 3.41
5295 9642 3.243535 TGGAAGCGATCATACTAGCACTG 60.244 47.826 0.00 0.00 0.00 3.66
5296 9643 2.959030 TGGAAGCGATCATACTAGCACT 59.041 45.455 0.00 0.00 0.00 4.40
5297 9644 3.371102 TGGAAGCGATCATACTAGCAC 57.629 47.619 0.00 0.00 0.00 4.40
5298 9645 3.132111 TGTTGGAAGCGATCATACTAGCA 59.868 43.478 0.00 0.00 0.00 3.49
5299 9646 3.717707 TGTTGGAAGCGATCATACTAGC 58.282 45.455 0.00 0.00 0.00 3.42
5300 9647 5.292765 ACATGTTGGAAGCGATCATACTAG 58.707 41.667 0.00 0.00 0.00 2.57
5301 9648 5.276461 ACATGTTGGAAGCGATCATACTA 57.724 39.130 0.00 0.00 0.00 1.82
5302 9649 4.142609 ACATGTTGGAAGCGATCATACT 57.857 40.909 0.00 0.00 0.00 2.12
5303 9650 4.882671 AACATGTTGGAAGCGATCATAC 57.117 40.909 11.07 0.00 0.00 2.39


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.