Multiple sequence alignment - TraesCS1A01G045200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G045200 chr1A 100.000 2549 0 0 1 2549 26499968 26502516 0.000000e+00 4708
1 TraesCS1A01G045200 chr1A 91.226 1060 67 10 1513 2549 4887587 4888643 0.000000e+00 1419
2 TraesCS1A01G045200 chr1A 88.542 192 18 1 328 519 26530061 26530248 1.970000e-56 230
3 TraesCS1A01G045200 chr1A 98.462 130 2 0 1 130 593270004 593270133 1.970000e-56 230
4 TraesCS1A01G045200 chr1A 96.992 133 4 0 1 133 593263434 593263302 9.180000e-55 224
5 TraesCS1A01G045200 chr6A 93.696 1047 44 4 1513 2547 29290190 29289154 0.000000e+00 1548
6 TraesCS1A01G045200 chr6A 93.081 1055 48 7 1513 2549 29243183 29244230 0.000000e+00 1520
7 TraesCS1A01G045200 chr6A 90.858 1061 47 15 1513 2549 463228798 463229832 0.000000e+00 1376
8 TraesCS1A01G045200 chr5A 93.435 1051 40 6 1513 2549 656496470 656497505 0.000000e+00 1531
9 TraesCS1A01G045200 chr5A 92.600 1054 55 11 1513 2549 518823107 518822060 0.000000e+00 1493
10 TraesCS1A01G045200 chr5A 91.501 1059 65 9 1513 2549 323384987 323386042 0.000000e+00 1434
11 TraesCS1A01G045200 chr5A 86.616 1188 141 13 328 1512 645441439 645440267 0.000000e+00 1297
12 TraesCS1A01G045200 chr5A 95.857 700 27 2 1851 2549 518629966 518630664 0.000000e+00 1131
13 TraesCS1A01G045200 chr7A 92.205 1052 45 11 1513 2549 10075458 10074429 0.000000e+00 1454
14 TraesCS1A01G045200 chr7A 97.080 685 20 0 1865 2549 287280851 287280167 0.000000e+00 1155
15 TraesCS1A01G045200 chr7A 93.158 380 21 3 1513 1890 122576176 122576552 1.030000e-153 553
16 TraesCS1A01G045200 chr7A 97.710 131 3 0 1 131 712598675 712598805 2.550000e-55 226
17 TraesCS1A01G045200 chr1B 85.974 1155 141 17 361 1510 98463348 98464486 0.000000e+00 1216
18 TraesCS1A01G045200 chr1B 97.692 130 3 0 1 130 296748140 296748269 9.180000e-55 224
19 TraesCS1A01G045200 chr1B 94.737 95 5 0 232 326 40838534 40838628 5.680000e-32 148
20 TraesCS1A01G045200 chr5D 85.264 1174 148 19 317 1480 339120501 339119343 0.000000e+00 1186
21 TraesCS1A01G045200 chr5D 96.850 127 4 0 4 130 558642970 558642844 1.990000e-51 213
22 TraesCS1A01G045200 chr7B 84.524 1176 151 21 341 1512 554177343 554178491 0.000000e+00 1134
23 TraesCS1A01G045200 chr7B 97.692 130 3 0 1 130 589944373 589944244 9.180000e-55 224
24 TraesCS1A01G045200 chr7B 97.638 127 3 0 4 130 697265230 697265104 4.270000e-53 219
25 TraesCS1A01G045200 chr7B 96.923 130 4 0 1 130 697276942 697277071 4.270000e-53 219
26 TraesCS1A01G045200 chr3A 95.994 699 25 3 1851 2549 732824724 732824029 0.000000e+00 1133
27 TraesCS1A01G045200 chr3A 94.638 373 15 3 1513 1883 19817899 19817530 7.910000e-160 573
28 TraesCS1A01G045200 chr3A 95.028 362 16 2 1513 1872 705623587 705623226 3.680000e-158 568
29 TraesCS1A01G045200 chr3A 94.558 147 7 1 1 147 470835573 470835428 2.550000e-55 226
30 TraesCS1A01G045200 chr5B 82.308 1187 186 21 328 1506 37794779 37795949 0.000000e+00 1007
31 TraesCS1A01G045200 chr2B 83.152 1104 151 25 417 1512 446042667 446041591 0.000000e+00 976
32 TraesCS1A01G045200 chr4B 83.165 1087 160 18 353 1430 562629253 562630325 0.000000e+00 972
33 TraesCS1A01G045200 chr4B 96.850 127 4 0 4 130 626480766 626480892 1.990000e-51 213
34 TraesCS1A01G045200 chr4B 96.850 127 4 0 4 130 626498741 626498867 1.990000e-51 213
35 TraesCS1A01G045200 chr2A 82.981 1087 159 21 353 1430 333734604 333735673 0.000000e+00 959
36 TraesCS1A01G045200 chr4A 81.386 1198 191 23 326 1506 208820486 208819304 0.000000e+00 948
37 TraesCS1A01G045200 chr4A 92.768 401 19 6 1513 1912 559483718 559483327 2.850000e-159 571
38 TraesCS1A01G045200 chr4A 99.231 130 1 0 1 130 115559668 115559797 4.240000e-58 235
39 TraesCS1A01G045200 chr4A 99.219 128 1 0 3 130 115553083 115552956 5.480000e-57 231
40 TraesCS1A01G045200 chr4A 98.462 130 2 0 1 130 181640082 181640211 1.970000e-56 230
41 TraesCS1A01G045200 chr2D 81.536 1159 170 27 353 1498 453745427 453744300 0.000000e+00 915
42 TraesCS1A01G045200 chr7D 79.248 612 98 21 328 929 606808938 606809530 1.420000e-107 399
43 TraesCS1A01G045200 chr7D 95.455 132 6 0 1 132 69553311 69553442 7.140000e-51 211
44 TraesCS1A01G045200 chr7D 95.455 132 6 0 1 132 338858100 338857969 7.140000e-51 211
45 TraesCS1A01G045200 chr6B 98.462 130 2 0 1 130 190357893 190357764 1.970000e-56 230
46 TraesCS1A01G045200 chr6B 98.462 130 2 0 1 130 190373163 190373292 1.970000e-56 230
47 TraesCS1A01G045200 chr6B 97.692 130 3 0 1 130 172323555 172323684 9.180000e-55 224
48 TraesCS1A01G045200 chr6B 96.947 131 4 0 1 131 172316946 172316816 1.190000e-53 220
49 TraesCS1A01G045200 chrUn 98.425 127 2 0 4 130 238397005 238397131 9.180000e-55 224
50 TraesCS1A01G045200 chrUn 93.333 135 7 2 1 134 287372317 287372184 5.560000e-47 198
51 TraesCS1A01G045200 chrUn 93.333 135 7 2 1 134 329356868 329357001 5.560000e-47 198
52 TraesCS1A01G045200 chrUn 93.333 135 7 2 1 134 451028217 451028350 5.560000e-47 198
53 TraesCS1A01G045200 chrUn 84.615 130 19 1 1 130 26916069 26916197 7.400000e-26 128
54 TraesCS1A01G045200 chr1D 96.923 130 4 0 1 130 7481883 7481754 4.270000e-53 219
55 TraesCS1A01G045200 chr1D 96.154 130 5 0 1 130 7495735 7495864 1.990000e-51 213
56 TraesCS1A01G045200 chr1D 93.684 95 4 1 230 322 25389781 25389875 9.510000e-30 141
57 TraesCS1A01G045200 chr1D 91.837 98 7 1 230 327 25461349 25461445 4.420000e-28 135
58 TraesCS1A01G045200 chr1D 94.118 85 1 1 130 214 25461284 25461364 2.660000e-25 126
59 TraesCS1A01G045200 chr1D 89.412 85 5 2 130 214 25389716 25389796 1.250000e-18 104
60 TraesCS1A01G045200 chr6D 96.154 130 5 0 1 130 19500936 19501065 1.990000e-51 213
61 TraesCS1A01G045200 chr6D 94.737 133 7 0 1 133 19494061 19493929 9.240000e-50 207
62 TraesCS1A01G045200 chr6D 95.385 130 6 0 1 130 408425951 408426080 9.240000e-50 207
63 TraesCS1A01G045200 chr6D 93.130 131 9 0 1 131 408418933 408418803 2.590000e-45 193
64 TraesCS1A01G045200 chr4D 95.420 131 6 0 1 131 265701185 265701055 2.570000e-50 209
65 TraesCS1A01G045200 chr4D 95.312 128 6 0 3 130 410997319 410997192 1.200000e-48 204
66 TraesCS1A01G045200 chr4D 95.312 128 6 0 3 130 411004820 411004947 1.200000e-48 204


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G045200 chr1A 26499968 26502516 2548 False 4708 4708 100.000 1 2549 1 chr1A.!!$F2 2548
1 TraesCS1A01G045200 chr1A 4887587 4888643 1056 False 1419 1419 91.226 1513 2549 1 chr1A.!!$F1 1036
2 TraesCS1A01G045200 chr6A 29289154 29290190 1036 True 1548 1548 93.696 1513 2547 1 chr6A.!!$R1 1034
3 TraesCS1A01G045200 chr6A 29243183 29244230 1047 False 1520 1520 93.081 1513 2549 1 chr6A.!!$F1 1036
4 TraesCS1A01G045200 chr6A 463228798 463229832 1034 False 1376 1376 90.858 1513 2549 1 chr6A.!!$F2 1036
5 TraesCS1A01G045200 chr5A 656496470 656497505 1035 False 1531 1531 93.435 1513 2549 1 chr5A.!!$F3 1036
6 TraesCS1A01G045200 chr5A 518822060 518823107 1047 True 1493 1493 92.600 1513 2549 1 chr5A.!!$R1 1036
7 TraesCS1A01G045200 chr5A 323384987 323386042 1055 False 1434 1434 91.501 1513 2549 1 chr5A.!!$F1 1036
8 TraesCS1A01G045200 chr5A 645440267 645441439 1172 True 1297 1297 86.616 328 1512 1 chr5A.!!$R2 1184
9 TraesCS1A01G045200 chr5A 518629966 518630664 698 False 1131 1131 95.857 1851 2549 1 chr5A.!!$F2 698
10 TraesCS1A01G045200 chr7A 10074429 10075458 1029 True 1454 1454 92.205 1513 2549 1 chr7A.!!$R1 1036
11 TraesCS1A01G045200 chr7A 287280167 287280851 684 True 1155 1155 97.080 1865 2549 1 chr7A.!!$R2 684
12 TraesCS1A01G045200 chr1B 98463348 98464486 1138 False 1216 1216 85.974 361 1510 1 chr1B.!!$F2 1149
13 TraesCS1A01G045200 chr5D 339119343 339120501 1158 True 1186 1186 85.264 317 1480 1 chr5D.!!$R1 1163
14 TraesCS1A01G045200 chr7B 554177343 554178491 1148 False 1134 1134 84.524 341 1512 1 chr7B.!!$F1 1171
15 TraesCS1A01G045200 chr3A 732824029 732824724 695 True 1133 1133 95.994 1851 2549 1 chr3A.!!$R4 698
16 TraesCS1A01G045200 chr5B 37794779 37795949 1170 False 1007 1007 82.308 328 1506 1 chr5B.!!$F1 1178
17 TraesCS1A01G045200 chr2B 446041591 446042667 1076 True 976 976 83.152 417 1512 1 chr2B.!!$R1 1095
18 TraesCS1A01G045200 chr4B 562629253 562630325 1072 False 972 972 83.165 353 1430 1 chr4B.!!$F1 1077
19 TraesCS1A01G045200 chr2A 333734604 333735673 1069 False 959 959 82.981 353 1430 1 chr2A.!!$F1 1077
20 TraesCS1A01G045200 chr4A 208819304 208820486 1182 True 948 948 81.386 326 1506 1 chr4A.!!$R2 1180
21 TraesCS1A01G045200 chr2D 453744300 453745427 1127 True 915 915 81.536 353 1498 1 chr2D.!!$R1 1145
22 TraesCS1A01G045200 chr7D 606808938 606809530 592 False 399 399 79.248 328 929 1 chr7D.!!$F2 601

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
221 222 0.036732 GTGTGATTGGGGCTGTCTCA 59.963 55.0 0.00 0.0 0.00 3.27 F
414 418 0.533755 ATCTAGCAATGCTCACGGCC 60.534 55.0 12.53 0.0 40.44 6.13 F
1138 1180 0.461548 CAAGCCAGGCGATCTGTCTA 59.538 55.0 5.55 0.0 41.83 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1079 1121 0.530650 GAGAATCATGAAGCGGGCGA 60.531 55.000 0.00 0.0 33.17 5.54 R
1260 1303 1.741770 GCCAAGCACGACTCGGATT 60.742 57.895 2.98 0.0 0.00 3.01 R
2386 2505 3.749665 AGCTAGCTGCCATCTCTTTAG 57.250 47.619 18.57 0.0 44.23 1.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.412933 GCGCTTATACGGCTGTCA 57.587 55.556 0.00 0.00 0.00 3.58
18 19 2.217112 GCGCTTATACGGCTGTCAG 58.783 57.895 0.00 0.00 0.00 3.51
19 20 1.822250 GCGCTTATACGGCTGTCAGC 61.822 60.000 16.93 16.93 41.46 4.26
28 29 3.102097 GCTGTCAGCCCGTTATGC 58.898 61.111 14.27 0.00 34.48 3.14
29 30 1.745115 GCTGTCAGCCCGTTATGCA 60.745 57.895 14.27 0.00 34.48 3.96
30 31 1.097547 GCTGTCAGCCCGTTATGCAT 61.098 55.000 14.27 3.79 34.48 3.96
31 32 0.940126 CTGTCAGCCCGTTATGCATC 59.060 55.000 0.19 0.00 0.00 3.91
32 33 0.251634 TGTCAGCCCGTTATGCATCA 59.748 50.000 0.19 0.00 0.00 3.07
33 34 0.657840 GTCAGCCCGTTATGCATCAC 59.342 55.000 0.19 0.46 0.00 3.06
34 35 0.541392 TCAGCCCGTTATGCATCACT 59.459 50.000 0.19 0.00 0.00 3.41
35 36 1.065491 TCAGCCCGTTATGCATCACTT 60.065 47.619 0.19 0.00 0.00 3.16
36 37 2.169561 TCAGCCCGTTATGCATCACTTA 59.830 45.455 0.19 0.00 0.00 2.24
37 38 2.545526 CAGCCCGTTATGCATCACTTAG 59.454 50.000 0.19 0.00 0.00 2.18
38 39 1.873591 GCCCGTTATGCATCACTTAGG 59.126 52.381 0.19 4.89 0.00 2.69
39 40 1.873591 CCCGTTATGCATCACTTAGGC 59.126 52.381 0.19 0.00 34.77 3.93
40 41 1.873591 CCGTTATGCATCACTTAGGCC 59.126 52.381 0.19 0.00 32.61 5.19
41 42 2.485479 CCGTTATGCATCACTTAGGCCT 60.485 50.000 11.78 11.78 32.61 5.19
42 43 3.206150 CGTTATGCATCACTTAGGCCTT 58.794 45.455 12.58 0.00 32.61 4.35
43 44 3.002656 CGTTATGCATCACTTAGGCCTTG 59.997 47.826 12.58 2.75 32.61 3.61
44 45 4.199310 GTTATGCATCACTTAGGCCTTGA 58.801 43.478 12.58 9.85 32.61 3.02
45 46 2.408271 TGCATCACTTAGGCCTTGAG 57.592 50.000 12.58 12.76 32.61 3.02
46 47 1.630369 TGCATCACTTAGGCCTTGAGT 59.370 47.619 12.58 13.51 32.61 3.41
47 48 2.040278 TGCATCACTTAGGCCTTGAGTT 59.960 45.455 12.58 0.00 32.61 3.01
48 49 2.421424 GCATCACTTAGGCCTTGAGTTG 59.579 50.000 12.58 12.73 0.00 3.16
49 50 2.859165 TCACTTAGGCCTTGAGTTGG 57.141 50.000 12.58 5.31 0.00 3.77
50 51 2.054799 TCACTTAGGCCTTGAGTTGGT 58.945 47.619 12.58 0.00 0.00 3.67
51 52 3.244582 TCACTTAGGCCTTGAGTTGGTA 58.755 45.455 12.58 0.00 0.00 3.25
52 53 3.007614 TCACTTAGGCCTTGAGTTGGTAC 59.992 47.826 12.58 0.00 0.00 3.34
53 54 3.008049 CACTTAGGCCTTGAGTTGGTACT 59.992 47.826 12.58 0.00 37.31 2.73
54 55 3.008049 ACTTAGGCCTTGAGTTGGTACTG 59.992 47.826 12.58 0.00 33.84 2.74
55 56 1.729586 AGGCCTTGAGTTGGTACTGA 58.270 50.000 0.00 0.00 33.84 3.41
56 57 2.054799 AGGCCTTGAGTTGGTACTGAA 58.945 47.619 0.00 0.00 33.84 3.02
57 58 2.152016 GGCCTTGAGTTGGTACTGAAC 58.848 52.381 0.00 0.00 33.84 3.18
58 59 2.224548 GGCCTTGAGTTGGTACTGAACT 60.225 50.000 9.68 9.68 36.33 3.01
59 60 2.808543 GCCTTGAGTTGGTACTGAACTG 59.191 50.000 13.45 3.50 33.71 3.16
60 61 2.808543 CCTTGAGTTGGTACTGAACTGC 59.191 50.000 13.45 7.64 33.71 4.40
61 62 2.148916 TGAGTTGGTACTGAACTGCG 57.851 50.000 13.45 0.00 33.71 5.18
62 63 1.684450 TGAGTTGGTACTGAACTGCGA 59.316 47.619 13.45 0.00 33.71 5.10
63 64 2.059541 GAGTTGGTACTGAACTGCGAC 58.940 52.381 13.45 0.00 33.71 5.19
64 65 1.411246 AGTTGGTACTGAACTGCGACA 59.589 47.619 9.25 0.00 32.30 4.35
65 66 2.037251 AGTTGGTACTGAACTGCGACAT 59.963 45.455 9.25 0.00 32.30 3.06
66 67 2.078849 TGGTACTGAACTGCGACATG 57.921 50.000 0.00 0.00 0.00 3.21
67 68 0.721718 GGTACTGAACTGCGACATGC 59.278 55.000 0.00 0.00 46.70 4.06
76 77 4.478195 GCGACATGCACGAGTAGT 57.522 55.556 15.30 0.00 45.45 2.73
88 89 3.681855 CACGAGTAGTGGTACTGATTCG 58.318 50.000 0.00 0.00 46.77 3.34
89 90 3.126514 CACGAGTAGTGGTACTGATTCGT 59.873 47.826 0.00 9.69 46.77 3.85
90 91 3.126514 ACGAGTAGTGGTACTGATTCGTG 59.873 47.826 12.78 0.00 39.78 4.35
91 92 3.373130 CGAGTAGTGGTACTGATTCGTGA 59.627 47.826 0.00 0.00 39.78 4.35
92 93 4.494362 CGAGTAGTGGTACTGATTCGTGAG 60.494 50.000 0.00 0.00 39.78 3.51
93 94 4.333690 AGTAGTGGTACTGATTCGTGAGT 58.666 43.478 0.00 0.00 38.14 3.41
94 95 5.494724 AGTAGTGGTACTGATTCGTGAGTA 58.505 41.667 0.00 0.00 38.14 2.59
95 96 4.966965 AGTGGTACTGATTCGTGAGTAG 57.033 45.455 0.00 0.00 0.00 2.57
96 97 3.695060 AGTGGTACTGATTCGTGAGTAGG 59.305 47.826 0.00 0.00 0.00 3.18
97 98 3.442977 GTGGTACTGATTCGTGAGTAGGT 59.557 47.826 0.00 0.00 0.00 3.08
98 99 3.442625 TGGTACTGATTCGTGAGTAGGTG 59.557 47.826 0.00 0.00 0.00 4.00
99 100 3.693085 GGTACTGATTCGTGAGTAGGTGA 59.307 47.826 0.00 0.00 0.00 4.02
100 101 4.201930 GGTACTGATTCGTGAGTAGGTGAG 60.202 50.000 0.00 0.00 0.00 3.51
101 102 2.164624 ACTGATTCGTGAGTAGGTGAGC 59.835 50.000 0.00 0.00 0.00 4.26
102 103 2.164422 CTGATTCGTGAGTAGGTGAGCA 59.836 50.000 0.00 0.00 0.00 4.26
103 104 2.560981 TGATTCGTGAGTAGGTGAGCAA 59.439 45.455 0.00 0.00 0.00 3.91
104 105 2.724977 TTCGTGAGTAGGTGAGCAAG 57.275 50.000 0.00 0.00 0.00 4.01
105 106 1.617322 TCGTGAGTAGGTGAGCAAGT 58.383 50.000 0.00 0.00 0.00 3.16
106 107 1.269723 TCGTGAGTAGGTGAGCAAGTG 59.730 52.381 0.00 0.00 0.00 3.16
107 108 1.000163 CGTGAGTAGGTGAGCAAGTGT 60.000 52.381 0.00 0.00 0.00 3.55
108 109 2.408050 GTGAGTAGGTGAGCAAGTGTG 58.592 52.381 0.00 0.00 0.00 3.82
109 110 1.344438 TGAGTAGGTGAGCAAGTGTGG 59.656 52.381 0.00 0.00 0.00 4.17
110 111 1.344763 GAGTAGGTGAGCAAGTGTGGT 59.655 52.381 0.00 0.00 38.47 4.16
111 112 2.561419 GAGTAGGTGAGCAAGTGTGGTA 59.439 50.000 0.00 0.00 35.00 3.25
112 113 2.299297 AGTAGGTGAGCAAGTGTGGTAC 59.701 50.000 0.00 0.00 35.00 3.34
113 114 0.396811 AGGTGAGCAAGTGTGGTACC 59.603 55.000 4.43 4.43 35.00 3.34
114 115 0.107831 GGTGAGCAAGTGTGGTACCA 59.892 55.000 11.60 11.60 35.00 3.25
115 116 1.476110 GGTGAGCAAGTGTGGTACCAA 60.476 52.381 18.31 4.31 35.00 3.67
116 117 1.602377 GTGAGCAAGTGTGGTACCAAC 59.398 52.381 18.31 16.47 35.00 3.77
117 118 0.865769 GAGCAAGTGTGGTACCAACG 59.134 55.000 18.31 4.56 35.00 4.10
118 119 0.179468 AGCAAGTGTGGTACCAACGT 59.821 50.000 18.31 12.34 32.39 3.99
119 120 0.306533 GCAAGTGTGGTACCAACGTG 59.693 55.000 24.58 24.58 0.00 4.49
120 121 0.306533 CAAGTGTGGTACCAACGTGC 59.693 55.000 18.31 4.10 0.00 5.34
121 122 0.107606 AAGTGTGGTACCAACGTGCA 60.108 50.000 18.31 7.16 0.00 4.57
122 123 0.107606 AGTGTGGTACCAACGTGCAA 60.108 50.000 18.31 0.00 0.00 4.08
123 124 0.948678 GTGTGGTACCAACGTGCAAT 59.051 50.000 18.31 0.00 0.00 3.56
124 125 1.335496 GTGTGGTACCAACGTGCAATT 59.665 47.619 18.31 0.00 0.00 2.32
125 126 2.548904 GTGTGGTACCAACGTGCAATTA 59.451 45.455 18.31 0.00 0.00 1.40
126 127 3.003482 GTGTGGTACCAACGTGCAATTAA 59.997 43.478 18.31 0.00 0.00 1.40
127 128 3.003482 TGTGGTACCAACGTGCAATTAAC 59.997 43.478 18.31 0.00 0.00 2.01
128 129 3.251487 GTGGTACCAACGTGCAATTAACT 59.749 43.478 18.31 0.00 0.00 2.24
129 130 3.499157 TGGTACCAACGTGCAATTAACTC 59.501 43.478 13.60 0.00 0.00 3.01
130 131 3.499157 GGTACCAACGTGCAATTAACTCA 59.501 43.478 7.15 0.00 0.00 3.41
131 132 4.155280 GGTACCAACGTGCAATTAACTCAT 59.845 41.667 7.15 0.00 0.00 2.90
132 133 4.419522 ACCAACGTGCAATTAACTCATC 57.580 40.909 0.00 0.00 0.00 2.92
133 134 3.818210 ACCAACGTGCAATTAACTCATCA 59.182 39.130 0.00 0.00 0.00 3.07
134 135 4.158384 CCAACGTGCAATTAACTCATCAC 58.842 43.478 0.00 0.00 0.00 3.06
135 136 4.320129 CCAACGTGCAATTAACTCATCACA 60.320 41.667 0.00 0.00 0.00 3.58
136 137 4.404507 ACGTGCAATTAACTCATCACAC 57.595 40.909 0.00 0.00 0.00 3.82
137 138 3.812609 ACGTGCAATTAACTCATCACACA 59.187 39.130 0.00 0.00 0.00 3.72
138 139 4.274705 ACGTGCAATTAACTCATCACACAA 59.725 37.500 0.00 0.00 0.00 3.33
139 140 4.612614 CGTGCAATTAACTCATCACACAAC 59.387 41.667 0.00 0.00 0.00 3.32
140 141 4.917415 GTGCAATTAACTCATCACACAACC 59.083 41.667 0.00 0.00 0.00 3.77
141 142 4.022416 TGCAATTAACTCATCACACAACCC 60.022 41.667 0.00 0.00 0.00 4.11
142 143 4.022416 GCAATTAACTCATCACACAACCCA 60.022 41.667 0.00 0.00 0.00 4.51
143 144 5.702865 CAATTAACTCATCACACAACCCAG 58.297 41.667 0.00 0.00 0.00 4.45
144 145 1.609208 AACTCATCACACAACCCAGC 58.391 50.000 0.00 0.00 0.00 4.85
145 146 0.250901 ACTCATCACACAACCCAGCC 60.251 55.000 0.00 0.00 0.00 4.85
146 147 0.962356 CTCATCACACAACCCAGCCC 60.962 60.000 0.00 0.00 0.00 5.19
147 148 1.228521 CATCACACAACCCAGCCCA 60.229 57.895 0.00 0.00 0.00 5.36
148 149 0.827089 CATCACACAACCCAGCCCAA 60.827 55.000 0.00 0.00 0.00 4.12
149 150 0.540365 ATCACACAACCCAGCCCAAG 60.540 55.000 0.00 0.00 0.00 3.61
150 151 2.521708 ACACAACCCAGCCCAAGC 60.522 61.111 0.00 0.00 40.32 4.01
151 152 3.305516 CACAACCCAGCCCAAGCC 61.306 66.667 0.00 0.00 41.25 4.35
152 153 3.831637 ACAACCCAGCCCAAGCCA 61.832 61.111 0.00 0.00 41.25 4.75
153 154 2.993264 CAACCCAGCCCAAGCCAG 60.993 66.667 0.00 0.00 41.25 4.85
154 155 3.185203 AACCCAGCCCAAGCCAGA 61.185 61.111 0.00 0.00 41.25 3.86
155 156 2.777960 AACCCAGCCCAAGCCAGAA 61.778 57.895 0.00 0.00 41.25 3.02
156 157 2.362120 CCCAGCCCAAGCCAGAAG 60.362 66.667 0.00 0.00 41.25 2.85
157 158 3.066814 CCAGCCCAAGCCAGAAGC 61.067 66.667 0.00 0.00 41.25 3.86
167 168 4.020617 CCAGAAGCAGCCCACCGA 62.021 66.667 0.00 0.00 0.00 4.69
168 169 2.270205 CAGAAGCAGCCCACCGAT 59.730 61.111 0.00 0.00 0.00 4.18
169 170 1.817099 CAGAAGCAGCCCACCGATC 60.817 63.158 0.00 0.00 0.00 3.69
170 171 2.892425 GAAGCAGCCCACCGATCG 60.892 66.667 8.51 8.51 0.00 3.69
171 172 3.371097 GAAGCAGCCCACCGATCGA 62.371 63.158 18.66 0.00 0.00 3.59
172 173 3.376935 AAGCAGCCCACCGATCGAG 62.377 63.158 18.66 9.42 0.00 4.04
173 174 4.148825 GCAGCCCACCGATCGAGT 62.149 66.667 18.66 10.13 0.00 4.18
174 175 2.105128 CAGCCCACCGATCGAGTC 59.895 66.667 18.66 1.57 0.00 3.36
175 176 2.362503 AGCCCACCGATCGAGTCA 60.363 61.111 18.66 0.00 0.00 3.41
176 177 2.105128 GCCCACCGATCGAGTCAG 59.895 66.667 18.66 1.10 0.00 3.51
177 178 2.105128 CCCACCGATCGAGTCAGC 59.895 66.667 18.66 0.00 0.00 4.26
178 179 2.105128 CCACCGATCGAGTCAGCC 59.895 66.667 18.66 0.00 0.00 4.85
179 180 2.278206 CACCGATCGAGTCAGCCG 60.278 66.667 18.66 0.00 0.00 5.52
180 181 2.750637 ACCGATCGAGTCAGCCGT 60.751 61.111 18.66 0.00 0.00 5.68
181 182 2.024871 CCGATCGAGTCAGCCGTC 59.975 66.667 18.66 0.00 0.00 4.79
182 183 2.761195 CCGATCGAGTCAGCCGTCA 61.761 63.158 18.66 0.00 0.00 4.35
183 184 1.583967 CGATCGAGTCAGCCGTCAC 60.584 63.158 10.26 0.00 0.00 3.67
184 185 1.506718 GATCGAGTCAGCCGTCACA 59.493 57.895 0.00 0.00 0.00 3.58
185 186 0.798771 GATCGAGTCAGCCGTCACAC 60.799 60.000 0.00 0.00 0.00 3.82
186 187 2.529005 ATCGAGTCAGCCGTCACACG 62.529 60.000 0.00 0.00 42.11 4.49
187 188 3.106407 GAGTCAGCCGTCACACGC 61.106 66.667 0.00 0.00 40.91 5.34
188 189 4.664677 AGTCAGCCGTCACACGCC 62.665 66.667 0.00 0.00 40.91 5.68
189 190 4.961511 GTCAGCCGTCACACGCCA 62.962 66.667 0.00 0.00 40.91 5.69
190 191 4.228567 TCAGCCGTCACACGCCAA 62.229 61.111 0.00 0.00 40.91 4.52
191 192 3.716006 CAGCCGTCACACGCCAAG 61.716 66.667 0.00 0.00 40.91 3.61
192 193 4.988598 AGCCGTCACACGCCAAGG 62.989 66.667 0.00 0.00 40.91 3.61
195 196 3.276091 CGTCACACGCCAAGGCAA 61.276 61.111 12.19 0.00 42.06 4.52
196 197 2.639286 GTCACACGCCAAGGCAAG 59.361 61.111 12.19 5.09 42.06 4.01
197 198 3.286751 TCACACGCCAAGGCAAGC 61.287 61.111 12.19 0.00 42.06 4.01
198 199 3.594775 CACACGCCAAGGCAAGCA 61.595 61.111 12.19 0.00 42.06 3.91
199 200 3.595758 ACACGCCAAGGCAAGCAC 61.596 61.111 12.19 0.00 42.06 4.40
200 201 4.688419 CACGCCAAGGCAAGCACG 62.688 66.667 12.19 0.00 42.06 5.34
204 205 4.688419 CCAAGGCAAGCACGCGTG 62.688 66.667 34.01 34.01 0.00 5.34
205 206 3.952675 CAAGGCAAGCACGCGTGT 61.953 61.111 36.80 22.42 0.00 4.49
215 216 4.329545 ACGCGTGTGATTGGGGCT 62.330 61.111 12.93 0.00 0.00 5.19
216 217 3.803082 CGCGTGTGATTGGGGCTG 61.803 66.667 0.00 0.00 0.00 4.85
217 218 2.672996 GCGTGTGATTGGGGCTGT 60.673 61.111 0.00 0.00 0.00 4.40
218 219 2.690778 GCGTGTGATTGGGGCTGTC 61.691 63.158 0.00 0.00 0.00 3.51
219 220 1.003355 CGTGTGATTGGGGCTGTCT 60.003 57.895 0.00 0.00 0.00 3.41
220 221 1.021390 CGTGTGATTGGGGCTGTCTC 61.021 60.000 0.00 0.00 0.00 3.36
221 222 0.036732 GTGTGATTGGGGCTGTCTCA 59.963 55.000 0.00 0.00 0.00 3.27
222 223 0.770499 TGTGATTGGGGCTGTCTCAA 59.230 50.000 0.00 0.00 0.00 3.02
223 224 1.144708 TGTGATTGGGGCTGTCTCAAA 59.855 47.619 0.00 0.00 0.00 2.69
224 225 2.238521 GTGATTGGGGCTGTCTCAAAA 58.761 47.619 0.00 0.00 0.00 2.44
225 226 2.827921 GTGATTGGGGCTGTCTCAAAAT 59.172 45.455 0.00 0.00 0.00 1.82
226 227 4.016444 GTGATTGGGGCTGTCTCAAAATA 58.984 43.478 0.00 0.00 0.00 1.40
227 228 4.462483 GTGATTGGGGCTGTCTCAAAATAA 59.538 41.667 0.00 0.00 0.00 1.40
228 229 5.047377 GTGATTGGGGCTGTCTCAAAATAAA 60.047 40.000 0.00 0.00 0.00 1.40
229 230 5.541868 TGATTGGGGCTGTCTCAAAATAAAA 59.458 36.000 0.00 0.00 0.00 1.52
230 231 4.864704 TGGGGCTGTCTCAAAATAAAAC 57.135 40.909 0.00 0.00 0.00 2.43
231 232 3.254657 TGGGGCTGTCTCAAAATAAAACG 59.745 43.478 0.00 0.00 0.00 3.60
232 233 3.242518 GGGCTGTCTCAAAATAAAACGC 58.757 45.455 0.00 0.00 0.00 4.84
233 234 2.908626 GGCTGTCTCAAAATAAAACGCG 59.091 45.455 3.53 3.53 0.00 6.01
234 235 3.551551 GCTGTCTCAAAATAAAACGCGT 58.448 40.909 5.58 5.58 0.00 6.01
235 236 3.357823 GCTGTCTCAAAATAAAACGCGTG 59.642 43.478 14.98 0.00 0.00 5.34
236 237 4.523813 CTGTCTCAAAATAAAACGCGTGT 58.476 39.130 14.98 3.14 0.00 4.49
237 238 4.275662 TGTCTCAAAATAAAACGCGTGTG 58.724 39.130 14.98 2.81 0.00 3.82
238 239 4.034163 TGTCTCAAAATAAAACGCGTGTGA 59.966 37.500 14.98 0.00 0.00 3.58
239 240 5.144359 GTCTCAAAATAAAACGCGTGTGAT 58.856 37.500 14.98 1.58 0.00 3.06
240 241 5.623673 GTCTCAAAATAAAACGCGTGTGATT 59.376 36.000 14.98 9.97 0.00 2.57
241 242 5.623264 TCTCAAAATAAAACGCGTGTGATTG 59.377 36.000 14.98 13.83 0.00 2.67
242 243 4.677378 TCAAAATAAAACGCGTGTGATTGG 59.323 37.500 14.98 8.79 0.00 3.16
243 244 2.911819 ATAAAACGCGTGTGATTGGG 57.088 45.000 14.98 0.00 0.00 4.12
244 245 0.875728 TAAAACGCGTGTGATTGGGG 59.124 50.000 14.98 0.00 0.00 4.96
245 246 0.820074 AAAACGCGTGTGATTGGGGA 60.820 50.000 14.98 0.00 0.00 4.81
246 247 1.512156 AAACGCGTGTGATTGGGGAC 61.512 55.000 14.98 0.00 0.00 4.46
247 248 3.487202 CGCGTGTGATTGGGGACG 61.487 66.667 0.00 0.00 34.93 4.79
248 249 2.047655 GCGTGTGATTGGGGACGA 60.048 61.111 0.00 0.00 33.64 4.20
249 250 2.100631 GCGTGTGATTGGGGACGAG 61.101 63.158 0.00 0.00 33.64 4.18
250 251 1.292223 CGTGTGATTGGGGACGAGT 59.708 57.895 0.00 0.00 33.64 4.18
251 252 1.014044 CGTGTGATTGGGGACGAGTG 61.014 60.000 0.00 0.00 33.64 3.51
252 253 0.673644 GTGTGATTGGGGACGAGTGG 60.674 60.000 0.00 0.00 0.00 4.00
253 254 1.078426 GTGATTGGGGACGAGTGGG 60.078 63.158 0.00 0.00 0.00 4.61
254 255 1.537889 TGATTGGGGACGAGTGGGT 60.538 57.895 0.00 0.00 0.00 4.51
255 256 1.078426 GATTGGGGACGAGTGGGTG 60.078 63.158 0.00 0.00 0.00 4.61
256 257 1.537889 ATTGGGGACGAGTGGGTGA 60.538 57.895 0.00 0.00 0.00 4.02
257 258 1.838073 ATTGGGGACGAGTGGGTGAC 61.838 60.000 0.00 0.00 0.00 3.67
258 259 2.920912 GGGGACGAGTGGGTGACA 60.921 66.667 0.00 0.00 0.00 3.58
259 260 2.657237 GGGACGAGTGGGTGACAG 59.343 66.667 0.00 0.00 0.00 3.51
260 261 2.048127 GGACGAGTGGGTGACAGC 60.048 66.667 0.00 0.00 0.00 4.40
261 262 2.430921 GACGAGTGGGTGACAGCG 60.431 66.667 0.00 0.00 35.08 5.18
262 263 3.916392 GACGAGTGGGTGACAGCGG 62.916 68.421 0.00 0.00 33.73 5.52
263 264 3.991051 CGAGTGGGTGACAGCGGT 61.991 66.667 0.00 0.00 0.00 5.68
264 265 2.357517 GAGTGGGTGACAGCGGTG 60.358 66.667 14.13 14.13 0.00 4.94
265 266 2.842462 AGTGGGTGACAGCGGTGA 60.842 61.111 23.44 0.00 0.00 4.02
266 267 2.357517 GTGGGTGACAGCGGTGAG 60.358 66.667 23.44 0.00 0.00 3.51
267 268 2.523168 TGGGTGACAGCGGTGAGA 60.523 61.111 23.44 3.72 0.00 3.27
268 269 1.913262 TGGGTGACAGCGGTGAGAT 60.913 57.895 23.44 0.00 0.00 2.75
269 270 0.613572 TGGGTGACAGCGGTGAGATA 60.614 55.000 23.44 1.10 0.00 1.98
270 271 0.535335 GGGTGACAGCGGTGAGATAA 59.465 55.000 23.44 0.00 0.00 1.75
271 272 1.066430 GGGTGACAGCGGTGAGATAAA 60.066 52.381 23.44 0.00 0.00 1.40
272 273 2.614481 GGGTGACAGCGGTGAGATAAAA 60.614 50.000 23.44 0.00 0.00 1.52
273 274 3.071479 GGTGACAGCGGTGAGATAAAAA 58.929 45.455 23.44 0.00 0.00 1.94
274 275 3.125316 GGTGACAGCGGTGAGATAAAAAG 59.875 47.826 23.44 0.00 0.00 2.27
275 276 3.994392 GTGACAGCGGTGAGATAAAAAGA 59.006 43.478 23.44 0.00 0.00 2.52
276 277 4.451096 GTGACAGCGGTGAGATAAAAAGAA 59.549 41.667 23.44 0.00 0.00 2.52
277 278 5.049680 GTGACAGCGGTGAGATAAAAAGAAA 60.050 40.000 23.44 0.00 0.00 2.52
278 279 5.705441 TGACAGCGGTGAGATAAAAAGAAAT 59.295 36.000 23.44 0.00 0.00 2.17
279 280 5.942872 ACAGCGGTGAGATAAAAAGAAATG 58.057 37.500 23.44 0.00 0.00 2.32
280 281 5.106157 ACAGCGGTGAGATAAAAAGAAATGG 60.106 40.000 23.44 0.00 0.00 3.16
281 282 4.399303 AGCGGTGAGATAAAAAGAAATGGG 59.601 41.667 0.00 0.00 0.00 4.00
282 283 4.398044 GCGGTGAGATAAAAAGAAATGGGA 59.602 41.667 0.00 0.00 0.00 4.37
283 284 5.067805 GCGGTGAGATAAAAAGAAATGGGAT 59.932 40.000 0.00 0.00 0.00 3.85
284 285 6.729187 CGGTGAGATAAAAAGAAATGGGATC 58.271 40.000 0.00 0.00 0.00 3.36
285 286 6.238759 CGGTGAGATAAAAAGAAATGGGATCC 60.239 42.308 1.92 1.92 0.00 3.36
286 287 6.607198 GGTGAGATAAAAAGAAATGGGATCCA 59.393 38.462 15.23 0.00 38.19 3.41
287 288 7.124147 GGTGAGATAAAAAGAAATGGGATCCAA 59.876 37.037 15.23 1.27 36.95 3.53
288 289 7.976175 GTGAGATAAAAAGAAATGGGATCCAAC 59.024 37.037 15.23 0.00 36.95 3.77
289 290 7.100458 AGATAAAAAGAAATGGGATCCAACG 57.900 36.000 15.23 0.00 36.95 4.10
290 291 6.889722 AGATAAAAAGAAATGGGATCCAACGA 59.110 34.615 15.23 0.00 36.95 3.85
291 292 5.391312 AAAAAGAAATGGGATCCAACGAG 57.609 39.130 15.23 0.00 36.95 4.18
292 293 2.717639 AGAAATGGGATCCAACGAGG 57.282 50.000 15.23 0.00 36.95 4.63
312 313 6.023357 GAGGAGATCATCGAAGATTGATCA 57.977 41.667 22.36 0.00 45.26 2.92
313 314 6.416631 AGGAGATCATCGAAGATTGATCAA 57.583 37.500 22.36 11.26 45.26 2.57
314 315 6.457355 AGGAGATCATCGAAGATTGATCAAG 58.543 40.000 22.36 0.00 45.26 3.02
315 316 6.267242 AGGAGATCATCGAAGATTGATCAAGA 59.733 38.462 22.36 5.57 45.26 3.02
316 317 6.927936 GGAGATCATCGAAGATTGATCAAGAA 59.072 38.462 22.36 0.00 45.26 2.52
317 318 7.116662 GGAGATCATCGAAGATTGATCAAGAAG 59.883 40.741 22.36 2.74 45.26 2.85
318 319 6.930164 AGATCATCGAAGATTGATCAAGAAGG 59.070 38.462 22.36 2.52 45.26 3.46
319 320 6.225981 TCATCGAAGATTGATCAAGAAGGA 57.774 37.500 14.54 7.71 45.12 3.36
320 321 6.045318 TCATCGAAGATTGATCAAGAAGGAC 58.955 40.000 14.54 2.79 45.12 3.85
323 324 2.911484 AGATTGATCAAGAAGGACGGC 58.089 47.619 14.54 0.00 0.00 5.68
404 408 6.784969 ACTCCTACATTGTAGGATCTAGCAAT 59.215 38.462 34.81 16.53 42.34 3.56
410 414 4.327982 TGTAGGATCTAGCAATGCTCAC 57.672 45.455 12.53 1.63 40.44 3.51
412 416 1.069823 AGGATCTAGCAATGCTCACGG 59.930 52.381 12.53 0.91 40.44 4.94
413 417 0.864455 GATCTAGCAATGCTCACGGC 59.136 55.000 12.53 0.00 40.44 5.68
414 418 0.533755 ATCTAGCAATGCTCACGGCC 60.534 55.000 12.53 0.00 40.44 6.13
415 419 1.153289 CTAGCAATGCTCACGGCCT 60.153 57.895 12.53 0.00 40.44 5.19
468 473 3.540314 CTCTGCCTGCAGGGATATATC 57.460 52.381 33.46 15.59 47.00 1.63
494 503 7.228314 TGTACTTTGTAACTCAGTAGAGCAT 57.772 36.000 0.00 0.00 46.09 3.79
496 505 8.799367 TGTACTTTGTAACTCAGTAGAGCATTA 58.201 33.333 0.00 0.00 46.09 1.90
543 565 1.599518 CAGTTACCAGGCGCACCAA 60.600 57.895 10.83 0.00 39.06 3.67
544 566 0.960364 CAGTTACCAGGCGCACCAAT 60.960 55.000 10.83 0.00 39.06 3.16
546 568 1.677300 TTACCAGGCGCACCAATGG 60.677 57.895 10.83 11.38 37.32 3.16
621 646 2.304470 GGCTCTCTTTCTTCCTCCTTGT 59.696 50.000 0.00 0.00 0.00 3.16
656 691 1.115467 CACCTCTATGGCTTCCTCGT 58.885 55.000 0.00 0.00 40.22 4.18
658 693 1.342076 ACCTCTATGGCTTCCTCGTCA 60.342 52.381 0.00 0.00 40.22 4.35
743 781 3.569701 TCAATTTGCCTCTCTGTTCAACC 59.430 43.478 0.00 0.00 0.00 3.77
749 787 2.111999 CTCTCTGTTCAACCCCGGCA 62.112 60.000 0.00 0.00 0.00 5.69
794 835 1.064685 CCCCGCACCTTCCTATTTTCT 60.065 52.381 0.00 0.00 0.00 2.52
832 873 8.650490 ACAAACCACATCAAATTTCTCCTTAAT 58.350 29.630 0.00 0.00 0.00 1.40
992 1034 2.196742 TGGATCTATGCCACCCTCTT 57.803 50.000 0.00 0.00 0.00 2.85
1026 1068 2.166130 ATCATGTCGTCGGCACCACA 62.166 55.000 0.00 0.00 0.00 4.17
1028 1070 1.667830 ATGTCGTCGGCACCACAAG 60.668 57.895 0.00 0.00 0.00 3.16
1035 1077 2.489275 CGGCACCACAAGCACCTTT 61.489 57.895 0.00 0.00 0.00 3.11
1124 1166 1.003718 AGTACCGCAACCTCAAGCC 60.004 57.895 0.00 0.00 0.00 4.35
1138 1180 0.461548 CAAGCCAGGCGATCTGTCTA 59.538 55.000 5.55 0.00 41.83 2.59
1142 1184 1.342819 GCCAGGCGATCTGTCTATCTT 59.657 52.381 0.00 0.00 41.83 2.40
1172 1214 1.449353 GCCGGATGAAGCTCCTCAT 59.551 57.895 5.05 0.36 38.79 2.90
1260 1303 2.355837 GACAAGCGGCTCGACACA 60.356 61.111 1.45 0.00 0.00 3.72
1290 1333 0.543277 TGCTTGGCGATCAGGATCTT 59.457 50.000 7.61 0.00 35.72 2.40
1344 1387 0.906756 CTGAGGAGTCCCAGGAGCAA 60.907 60.000 16.08 0.00 33.88 3.91
1385 1428 3.589654 CTGCTTTCGCCCTGACCGA 62.590 63.158 0.00 0.00 34.43 4.69
1415 1458 0.979709 TCTGGTGCCAGCTCTAGCAT 60.980 55.000 13.12 0.00 45.16 3.79
1535 1582 0.037590 AGTGCAGAACCGGGCAATAA 59.962 50.000 6.32 0.00 42.45 1.40
1553 1600 1.761500 AACACCGGTTCGTAAGGCCT 61.761 55.000 2.97 0.00 38.47 5.19
1585 1632 2.084013 CGGTAACCGGCACTAAAGC 58.916 57.895 0.00 0.00 44.15 3.51
1790 1861 9.705290 ATTCTTTTTCGTTTGCTGGTATTTTAT 57.295 25.926 0.00 0.00 0.00 1.40
2037 2149 3.306294 GGCGGTAGCGGGTAATAGTATTT 60.306 47.826 17.08 0.00 46.35 1.40
2235 2353 6.420008 GTGAATAGTGTTCTGACAAACGTACT 59.580 38.462 1.08 0.00 37.57 2.73
2249 2367 5.068198 ACAAACGTACTCACTCCTGTCTTTA 59.932 40.000 0.00 0.00 0.00 1.85
2360 2479 6.422223 CCTTTACGAGAATGGAATTTGATCG 58.578 40.000 0.00 0.00 40.52 3.69
2488 2616 2.519013 GAGTGGCCCTGATGAACTTTT 58.481 47.619 0.00 0.00 0.00 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.822250 GCTGACAGCCGTATAAGCGC 61.822 60.000 17.01 0.00 34.48 5.92
1 2 2.217112 GCTGACAGCCGTATAAGCG 58.783 57.895 17.01 0.00 34.48 4.68
11 12 1.097547 ATGCATAACGGGCTGACAGC 61.098 55.000 19.55 19.55 41.46 4.40
13 14 0.251634 TGATGCATAACGGGCTGACA 59.748 50.000 0.00 0.00 0.00 3.58
14 15 0.657840 GTGATGCATAACGGGCTGAC 59.342 55.000 0.00 0.00 0.00 3.51
15 16 0.541392 AGTGATGCATAACGGGCTGA 59.459 50.000 8.61 0.00 0.00 4.26
16 17 1.382522 AAGTGATGCATAACGGGCTG 58.617 50.000 8.61 0.00 0.00 4.85
17 18 2.485479 CCTAAGTGATGCATAACGGGCT 60.485 50.000 8.61 0.00 0.00 5.19
18 19 1.873591 CCTAAGTGATGCATAACGGGC 59.126 52.381 8.61 0.00 0.00 6.13
19 20 1.873591 GCCTAAGTGATGCATAACGGG 59.126 52.381 8.61 12.64 0.00 5.28
20 21 1.873591 GGCCTAAGTGATGCATAACGG 59.126 52.381 8.61 5.47 0.00 4.44
21 22 2.838736 AGGCCTAAGTGATGCATAACG 58.161 47.619 1.29 0.00 0.00 3.18
22 23 4.199310 TCAAGGCCTAAGTGATGCATAAC 58.801 43.478 5.16 6.01 0.00 1.89
23 24 4.080356 ACTCAAGGCCTAAGTGATGCATAA 60.080 41.667 17.64 0.00 0.00 1.90
24 25 3.455910 ACTCAAGGCCTAAGTGATGCATA 59.544 43.478 17.64 0.00 0.00 3.14
25 26 2.240667 ACTCAAGGCCTAAGTGATGCAT 59.759 45.455 17.64 0.00 0.00 3.96
26 27 1.630369 ACTCAAGGCCTAAGTGATGCA 59.370 47.619 17.64 0.00 0.00 3.96
27 28 2.409948 ACTCAAGGCCTAAGTGATGC 57.590 50.000 17.64 0.00 0.00 3.91
28 29 3.012518 CCAACTCAAGGCCTAAGTGATG 58.987 50.000 18.75 14.36 0.00 3.07
29 30 2.644798 ACCAACTCAAGGCCTAAGTGAT 59.355 45.455 18.75 4.43 0.00 3.06
30 31 2.054799 ACCAACTCAAGGCCTAAGTGA 58.945 47.619 18.75 12.62 0.00 3.41
31 32 2.568623 ACCAACTCAAGGCCTAAGTG 57.431 50.000 18.75 8.89 0.00 3.16
32 33 3.008049 CAGTACCAACTCAAGGCCTAAGT 59.992 47.826 5.16 10.67 31.97 2.24
33 34 3.260884 TCAGTACCAACTCAAGGCCTAAG 59.739 47.826 5.16 9.91 31.97 2.18
34 35 3.244582 TCAGTACCAACTCAAGGCCTAA 58.755 45.455 5.16 0.00 31.97 2.69
35 36 2.897350 TCAGTACCAACTCAAGGCCTA 58.103 47.619 5.16 0.00 31.97 3.93
36 37 1.729586 TCAGTACCAACTCAAGGCCT 58.270 50.000 0.00 0.00 31.97 5.19
37 38 2.152016 GTTCAGTACCAACTCAAGGCC 58.848 52.381 0.00 0.00 31.97 5.19
38 39 2.808543 CAGTTCAGTACCAACTCAAGGC 59.191 50.000 5.08 0.00 31.40 4.35
39 40 2.808543 GCAGTTCAGTACCAACTCAAGG 59.191 50.000 5.08 0.00 31.40 3.61
40 41 2.476619 CGCAGTTCAGTACCAACTCAAG 59.523 50.000 5.08 0.00 31.40 3.02
41 42 2.101750 TCGCAGTTCAGTACCAACTCAA 59.898 45.455 5.08 0.00 31.40 3.02
42 43 1.684450 TCGCAGTTCAGTACCAACTCA 59.316 47.619 5.08 0.00 31.40 3.41
43 44 2.059541 GTCGCAGTTCAGTACCAACTC 58.940 52.381 5.08 1.65 31.40 3.01
44 45 1.411246 TGTCGCAGTTCAGTACCAACT 59.589 47.619 2.57 2.57 34.24 3.16
45 46 1.860676 TGTCGCAGTTCAGTACCAAC 58.139 50.000 0.00 0.00 0.00 3.77
46 47 2.412870 CATGTCGCAGTTCAGTACCAA 58.587 47.619 0.00 0.00 0.00 3.67
47 48 1.939381 GCATGTCGCAGTTCAGTACCA 60.939 52.381 0.00 0.00 41.79 3.25
48 49 0.721718 GCATGTCGCAGTTCAGTACC 59.278 55.000 0.00 0.00 41.79 3.34
59 60 1.413767 CCACTACTCGTGCATGTCGC 61.414 60.000 5.68 0.15 42.42 5.19
60 61 0.109272 ACCACTACTCGTGCATGTCG 60.109 55.000 5.68 0.00 42.42 4.35
61 62 2.163815 AGTACCACTACTCGTGCATGTC 59.836 50.000 5.68 0.00 42.42 3.06
62 63 2.094700 CAGTACCACTACTCGTGCATGT 60.095 50.000 5.68 0.48 42.42 3.21
63 64 2.163613 TCAGTACCACTACTCGTGCATG 59.836 50.000 0.00 0.00 42.42 4.06
64 65 2.443416 TCAGTACCACTACTCGTGCAT 58.557 47.619 0.00 0.00 42.42 3.96
65 66 1.900245 TCAGTACCACTACTCGTGCA 58.100 50.000 0.00 0.00 42.42 4.57
66 67 3.436496 GAATCAGTACCACTACTCGTGC 58.564 50.000 0.00 0.00 42.42 5.34
67 68 3.126514 ACGAATCAGTACCACTACTCGTG 59.873 47.826 0.00 0.00 43.41 4.35
68 69 3.126514 CACGAATCAGTACCACTACTCGT 59.873 47.826 0.00 0.00 36.82 4.18
69 70 3.373130 TCACGAATCAGTACCACTACTCG 59.627 47.826 0.00 0.00 30.03 4.18
70 71 4.395542 ACTCACGAATCAGTACCACTACTC 59.604 45.833 0.00 0.00 30.03 2.59
71 72 4.333690 ACTCACGAATCAGTACCACTACT 58.666 43.478 0.00 0.00 33.01 2.57
72 73 4.698583 ACTCACGAATCAGTACCACTAC 57.301 45.455 0.00 0.00 0.00 2.73
73 74 4.880120 CCTACTCACGAATCAGTACCACTA 59.120 45.833 0.00 0.00 0.00 2.74
74 75 3.695060 CCTACTCACGAATCAGTACCACT 59.305 47.826 0.00 0.00 0.00 4.00
75 76 3.442977 ACCTACTCACGAATCAGTACCAC 59.557 47.826 0.00 0.00 0.00 4.16
76 77 3.442625 CACCTACTCACGAATCAGTACCA 59.557 47.826 0.00 0.00 0.00 3.25
77 78 3.693085 TCACCTACTCACGAATCAGTACC 59.307 47.826 0.00 0.00 0.00 3.34
78 79 4.731193 GCTCACCTACTCACGAATCAGTAC 60.731 50.000 0.00 0.00 0.00 2.73
79 80 3.377485 GCTCACCTACTCACGAATCAGTA 59.623 47.826 0.00 0.00 0.00 2.74
80 81 2.164624 GCTCACCTACTCACGAATCAGT 59.835 50.000 0.00 0.00 0.00 3.41
81 82 2.164422 TGCTCACCTACTCACGAATCAG 59.836 50.000 0.00 0.00 0.00 2.90
82 83 2.167662 TGCTCACCTACTCACGAATCA 58.832 47.619 0.00 0.00 0.00 2.57
83 84 2.941453 TGCTCACCTACTCACGAATC 57.059 50.000 0.00 0.00 0.00 2.52
84 85 2.563179 ACTTGCTCACCTACTCACGAAT 59.437 45.455 0.00 0.00 0.00 3.34
85 86 1.961394 ACTTGCTCACCTACTCACGAA 59.039 47.619 0.00 0.00 0.00 3.85
86 87 1.269723 CACTTGCTCACCTACTCACGA 59.730 52.381 0.00 0.00 0.00 4.35
87 88 1.000163 ACACTTGCTCACCTACTCACG 60.000 52.381 0.00 0.00 0.00 4.35
88 89 2.408050 CACACTTGCTCACCTACTCAC 58.592 52.381 0.00 0.00 0.00 3.51
89 90 1.344438 CCACACTTGCTCACCTACTCA 59.656 52.381 0.00 0.00 0.00 3.41
90 91 1.344763 ACCACACTTGCTCACCTACTC 59.655 52.381 0.00 0.00 0.00 2.59
91 92 1.424638 ACCACACTTGCTCACCTACT 58.575 50.000 0.00 0.00 0.00 2.57
92 93 2.612221 GGTACCACACTTGCTCACCTAC 60.612 54.545 7.15 0.00 0.00 3.18
93 94 1.621814 GGTACCACACTTGCTCACCTA 59.378 52.381 7.15 0.00 0.00 3.08
94 95 0.396811 GGTACCACACTTGCTCACCT 59.603 55.000 7.15 0.00 0.00 4.00
95 96 0.107831 TGGTACCACACTTGCTCACC 59.892 55.000 11.60 0.00 0.00 4.02
96 97 1.602377 GTTGGTACCACACTTGCTCAC 59.398 52.381 16.04 2.62 0.00 3.51
97 98 1.808512 CGTTGGTACCACACTTGCTCA 60.809 52.381 16.04 0.00 0.00 4.26
98 99 0.865769 CGTTGGTACCACACTTGCTC 59.134 55.000 16.04 0.00 0.00 4.26
99 100 0.179468 ACGTTGGTACCACACTTGCT 59.821 50.000 16.04 0.00 0.00 3.91
100 101 0.306533 CACGTTGGTACCACACTTGC 59.693 55.000 16.04 0.08 0.00 4.01
101 102 0.306533 GCACGTTGGTACCACACTTG 59.693 55.000 16.04 18.68 0.00 3.16
102 103 0.107606 TGCACGTTGGTACCACACTT 60.108 50.000 16.04 7.21 0.00 3.16
103 104 0.107606 TTGCACGTTGGTACCACACT 60.108 50.000 16.04 0.00 0.00 3.55
104 105 0.948678 ATTGCACGTTGGTACCACAC 59.051 50.000 16.04 14.69 0.00 3.82
105 106 1.681538 AATTGCACGTTGGTACCACA 58.318 45.000 16.04 6.02 0.00 4.17
106 107 3.251487 AGTTAATTGCACGTTGGTACCAC 59.749 43.478 16.04 9.21 0.00 4.16
107 108 3.478509 AGTTAATTGCACGTTGGTACCA 58.521 40.909 11.60 11.60 0.00 3.25
108 109 3.499157 TGAGTTAATTGCACGTTGGTACC 59.501 43.478 4.43 4.43 0.00 3.34
109 110 4.735662 TGAGTTAATTGCACGTTGGTAC 57.264 40.909 0.00 0.00 0.00 3.34
110 111 4.998033 TGATGAGTTAATTGCACGTTGGTA 59.002 37.500 0.00 0.00 0.00 3.25
111 112 3.818210 TGATGAGTTAATTGCACGTTGGT 59.182 39.130 0.00 0.00 0.00 3.67
112 113 4.158384 GTGATGAGTTAATTGCACGTTGG 58.842 43.478 0.00 0.00 0.00 3.77
113 114 4.612614 GTGTGATGAGTTAATTGCACGTTG 59.387 41.667 0.00 0.00 0.00 4.10
114 115 4.274705 TGTGTGATGAGTTAATTGCACGTT 59.725 37.500 0.00 0.00 0.00 3.99
115 116 3.812609 TGTGTGATGAGTTAATTGCACGT 59.187 39.130 0.00 0.00 0.00 4.49
116 117 4.403015 TGTGTGATGAGTTAATTGCACG 57.597 40.909 0.00 0.00 0.00 5.34
117 118 4.917415 GGTTGTGTGATGAGTTAATTGCAC 59.083 41.667 0.00 0.00 0.00 4.57
118 119 4.022416 GGGTTGTGTGATGAGTTAATTGCA 60.022 41.667 0.00 0.00 0.00 4.08
119 120 4.022416 TGGGTTGTGTGATGAGTTAATTGC 60.022 41.667 0.00 0.00 0.00 3.56
120 121 5.702865 CTGGGTTGTGTGATGAGTTAATTG 58.297 41.667 0.00 0.00 0.00 2.32
121 122 4.218417 GCTGGGTTGTGTGATGAGTTAATT 59.782 41.667 0.00 0.00 0.00 1.40
122 123 3.758554 GCTGGGTTGTGTGATGAGTTAAT 59.241 43.478 0.00 0.00 0.00 1.40
123 124 3.146066 GCTGGGTTGTGTGATGAGTTAA 58.854 45.455 0.00 0.00 0.00 2.01
124 125 2.552155 GGCTGGGTTGTGTGATGAGTTA 60.552 50.000 0.00 0.00 0.00 2.24
125 126 1.609208 GCTGGGTTGTGTGATGAGTT 58.391 50.000 0.00 0.00 0.00 3.01
126 127 0.250901 GGCTGGGTTGTGTGATGAGT 60.251 55.000 0.00 0.00 0.00 3.41
127 128 0.962356 GGGCTGGGTTGTGTGATGAG 60.962 60.000 0.00 0.00 0.00 2.90
128 129 1.074775 GGGCTGGGTTGTGTGATGA 59.925 57.895 0.00 0.00 0.00 2.92
129 130 0.827089 TTGGGCTGGGTTGTGTGATG 60.827 55.000 0.00 0.00 0.00 3.07
130 131 0.540365 CTTGGGCTGGGTTGTGTGAT 60.540 55.000 0.00 0.00 0.00 3.06
131 132 1.152777 CTTGGGCTGGGTTGTGTGA 60.153 57.895 0.00 0.00 0.00 3.58
132 133 2.859981 GCTTGGGCTGGGTTGTGTG 61.860 63.158 0.00 0.00 35.22 3.82
133 134 2.521708 GCTTGGGCTGGGTTGTGT 60.522 61.111 0.00 0.00 35.22 3.72
134 135 3.305516 GGCTTGGGCTGGGTTGTG 61.306 66.667 0.00 0.00 38.73 3.33
135 136 3.815407 CTGGCTTGGGCTGGGTTGT 62.815 63.158 0.00 0.00 38.73 3.32
136 137 2.993264 CTGGCTTGGGCTGGGTTG 60.993 66.667 0.00 0.00 38.73 3.77
137 138 2.720144 CTTCTGGCTTGGGCTGGGTT 62.720 60.000 0.00 0.00 38.73 4.11
138 139 3.185203 TTCTGGCTTGGGCTGGGT 61.185 61.111 0.00 0.00 38.73 4.51
139 140 2.362120 CTTCTGGCTTGGGCTGGG 60.362 66.667 0.00 0.00 38.73 4.45
140 141 3.066814 GCTTCTGGCTTGGGCTGG 61.067 66.667 0.00 0.00 38.73 4.85
141 142 2.282674 TGCTTCTGGCTTGGGCTG 60.283 61.111 0.00 0.00 42.39 4.85
142 143 2.035312 CTGCTTCTGGCTTGGGCT 59.965 61.111 0.00 0.00 42.39 5.19
143 144 3.756727 GCTGCTTCTGGCTTGGGC 61.757 66.667 0.00 0.00 42.39 5.36
144 145 3.066814 GGCTGCTTCTGGCTTGGG 61.067 66.667 0.00 0.00 42.39 4.12
145 146 3.066814 GGGCTGCTTCTGGCTTGG 61.067 66.667 0.00 0.00 42.39 3.61
146 147 2.282674 TGGGCTGCTTCTGGCTTG 60.283 61.111 0.00 0.00 42.39 4.01
147 148 2.282745 GTGGGCTGCTTCTGGCTT 60.283 61.111 0.00 0.00 42.39 4.35
148 149 4.357279 GGTGGGCTGCTTCTGGCT 62.357 66.667 0.00 0.00 42.39 4.75
150 151 3.335356 ATCGGTGGGCTGCTTCTGG 62.335 63.158 0.00 0.00 0.00 3.86
151 152 1.817099 GATCGGTGGGCTGCTTCTG 60.817 63.158 0.00 0.00 0.00 3.02
152 153 2.586792 GATCGGTGGGCTGCTTCT 59.413 61.111 0.00 0.00 0.00 2.85
153 154 2.892425 CGATCGGTGGGCTGCTTC 60.892 66.667 7.38 0.00 0.00 3.86
154 155 3.376935 CTCGATCGGTGGGCTGCTT 62.377 63.158 16.41 0.00 0.00 3.91
155 156 3.842923 CTCGATCGGTGGGCTGCT 61.843 66.667 16.41 0.00 0.00 4.24
156 157 4.148825 ACTCGATCGGTGGGCTGC 62.149 66.667 16.41 0.00 0.00 5.25
157 158 2.105128 GACTCGATCGGTGGGCTG 59.895 66.667 16.41 0.14 0.00 4.85
158 159 2.362503 TGACTCGATCGGTGGGCT 60.363 61.111 16.41 0.00 0.00 5.19
159 160 2.105128 CTGACTCGATCGGTGGGC 59.895 66.667 16.41 8.81 0.00 5.36
160 161 2.105128 GCTGACTCGATCGGTGGG 59.895 66.667 16.41 6.06 35.91 4.61
161 162 2.105128 GGCTGACTCGATCGGTGG 59.895 66.667 16.41 8.56 35.91 4.61
162 163 2.278206 CGGCTGACTCGATCGGTG 60.278 66.667 16.41 11.15 35.91 4.94
163 164 2.750637 ACGGCTGACTCGATCGGT 60.751 61.111 16.41 12.07 35.91 4.69
164 165 2.024871 GACGGCTGACTCGATCGG 59.975 66.667 16.41 8.65 36.68 4.18
165 166 1.583967 GTGACGGCTGACTCGATCG 60.584 63.158 9.36 9.36 0.00 3.69
166 167 0.798771 GTGTGACGGCTGACTCGATC 60.799 60.000 0.00 0.00 0.00 3.69
167 168 1.213013 GTGTGACGGCTGACTCGAT 59.787 57.895 0.00 0.00 0.00 3.59
168 169 2.643272 GTGTGACGGCTGACTCGA 59.357 61.111 0.00 0.00 0.00 4.04
169 170 2.801162 CGTGTGACGGCTGACTCG 60.801 66.667 0.00 0.00 38.08 4.18
170 171 3.106407 GCGTGTGACGGCTGACTC 61.106 66.667 0.00 0.00 42.82 3.36
178 179 3.240606 CTTGCCTTGGCGTGTGACG 62.241 63.158 7.18 0.00 45.88 4.35
179 180 2.639286 CTTGCCTTGGCGTGTGAC 59.361 61.111 7.18 0.00 0.00 3.67
180 181 3.286751 GCTTGCCTTGGCGTGTGA 61.287 61.111 7.18 0.00 0.00 3.58
181 182 3.594775 TGCTTGCCTTGGCGTGTG 61.595 61.111 7.18 0.00 0.00 3.82
182 183 3.595758 GTGCTTGCCTTGGCGTGT 61.596 61.111 7.18 0.00 0.00 4.49
183 184 4.688419 CGTGCTTGCCTTGGCGTG 62.688 66.667 7.18 3.50 0.00 5.34
187 188 4.688419 CACGCGTGCTTGCCTTGG 62.688 66.667 28.16 0.00 0.00 3.61
188 189 3.952675 ACACGCGTGCTTGCCTTG 61.953 61.111 37.35 12.65 0.00 3.61
189 190 3.952675 CACACGCGTGCTTGCCTT 61.953 61.111 37.35 14.96 36.06 4.35
190 191 4.908687 TCACACGCGTGCTTGCCT 62.909 61.111 37.35 15.76 43.28 4.75
191 192 3.254014 AATCACACGCGTGCTTGCC 62.254 57.895 37.35 0.00 43.28 4.52
192 193 2.076628 CAATCACACGCGTGCTTGC 61.077 57.895 37.35 0.00 41.01 4.01
193 194 1.440850 CCAATCACACGCGTGCTTG 60.441 57.895 37.35 32.03 44.92 4.01
194 195 2.616330 CCCAATCACACGCGTGCTT 61.616 57.895 37.35 24.73 43.28 3.91
195 196 3.049674 CCCAATCACACGCGTGCT 61.050 61.111 37.35 22.14 43.28 4.40
196 197 4.101790 CCCCAATCACACGCGTGC 62.102 66.667 37.35 0.00 43.28 5.34
197 198 4.101790 GCCCCAATCACACGCGTG 62.102 66.667 35.99 35.99 45.08 5.34
198 199 4.329545 AGCCCCAATCACACGCGT 62.330 61.111 5.58 5.58 0.00 6.01
199 200 3.803082 CAGCCCCAATCACACGCG 61.803 66.667 3.53 3.53 0.00 6.01
200 201 2.672996 ACAGCCCCAATCACACGC 60.673 61.111 0.00 0.00 0.00 5.34
201 202 1.003355 AGACAGCCCCAATCACACG 60.003 57.895 0.00 0.00 0.00 4.49
202 203 0.036732 TGAGACAGCCCCAATCACAC 59.963 55.000 0.00 0.00 0.00 3.82
203 204 0.770499 TTGAGACAGCCCCAATCACA 59.230 50.000 0.00 0.00 0.00 3.58
204 205 1.909700 TTTGAGACAGCCCCAATCAC 58.090 50.000 0.00 0.00 0.00 3.06
205 206 2.673775 TTTTGAGACAGCCCCAATCA 57.326 45.000 0.00 0.00 0.00 2.57
206 207 5.659440 TTTATTTTGAGACAGCCCCAATC 57.341 39.130 0.00 0.00 0.00 2.67
207 208 5.566627 CGTTTTATTTTGAGACAGCCCCAAT 60.567 40.000 0.00 0.00 0.00 3.16
208 209 4.261825 CGTTTTATTTTGAGACAGCCCCAA 60.262 41.667 0.00 0.00 0.00 4.12
209 210 3.254657 CGTTTTATTTTGAGACAGCCCCA 59.745 43.478 0.00 0.00 0.00 4.96
210 211 3.833442 CGTTTTATTTTGAGACAGCCCC 58.167 45.455 0.00 0.00 0.00 5.80
211 212 3.242518 GCGTTTTATTTTGAGACAGCCC 58.757 45.455 0.00 0.00 0.00 5.19
212 213 2.908626 CGCGTTTTATTTTGAGACAGCC 59.091 45.455 0.00 0.00 0.00 4.85
213 214 3.357823 CACGCGTTTTATTTTGAGACAGC 59.642 43.478 10.22 0.00 0.00 4.40
214 215 4.375698 CACACGCGTTTTATTTTGAGACAG 59.624 41.667 10.22 0.00 0.00 3.51
215 216 4.034163 TCACACGCGTTTTATTTTGAGACA 59.966 37.500 10.22 0.00 0.00 3.41
216 217 4.520078 TCACACGCGTTTTATTTTGAGAC 58.480 39.130 10.22 0.00 0.00 3.36
217 218 4.797693 TCACACGCGTTTTATTTTGAGA 57.202 36.364 10.22 0.00 0.00 3.27
218 219 5.164196 CCAATCACACGCGTTTTATTTTGAG 60.164 40.000 10.22 0.00 0.00 3.02
219 220 4.677378 CCAATCACACGCGTTTTATTTTGA 59.323 37.500 10.22 4.04 0.00 2.69
220 221 4.143431 CCCAATCACACGCGTTTTATTTTG 60.143 41.667 10.22 9.09 0.00 2.44
221 222 3.984633 CCCAATCACACGCGTTTTATTTT 59.015 39.130 10.22 0.00 0.00 1.82
222 223 3.570559 CCCAATCACACGCGTTTTATTT 58.429 40.909 10.22 0.00 0.00 1.40
223 224 2.094957 CCCCAATCACACGCGTTTTATT 60.095 45.455 10.22 3.52 0.00 1.40
224 225 1.470890 CCCCAATCACACGCGTTTTAT 59.529 47.619 10.22 0.00 0.00 1.40
225 226 0.875728 CCCCAATCACACGCGTTTTA 59.124 50.000 10.22 0.00 0.00 1.52
226 227 0.820074 TCCCCAATCACACGCGTTTT 60.820 50.000 10.22 0.00 0.00 2.43
227 228 1.228003 TCCCCAATCACACGCGTTT 60.228 52.632 10.22 0.00 0.00 3.60
228 229 1.964373 GTCCCCAATCACACGCGTT 60.964 57.895 10.22 0.00 0.00 4.84
229 230 2.358247 GTCCCCAATCACACGCGT 60.358 61.111 5.58 5.58 0.00 6.01
230 231 3.487202 CGTCCCCAATCACACGCG 61.487 66.667 3.53 3.53 0.00 6.01
231 232 2.047655 TCGTCCCCAATCACACGC 60.048 61.111 0.00 0.00 32.21 5.34
232 233 1.014044 CACTCGTCCCCAATCACACG 61.014 60.000 0.00 0.00 0.00 4.49
233 234 0.673644 CCACTCGTCCCCAATCACAC 60.674 60.000 0.00 0.00 0.00 3.82
234 235 1.676968 CCACTCGTCCCCAATCACA 59.323 57.895 0.00 0.00 0.00 3.58
235 236 1.078426 CCCACTCGTCCCCAATCAC 60.078 63.158 0.00 0.00 0.00 3.06
236 237 1.537889 ACCCACTCGTCCCCAATCA 60.538 57.895 0.00 0.00 0.00 2.57
237 238 1.078426 CACCCACTCGTCCCCAATC 60.078 63.158 0.00 0.00 0.00 2.67
238 239 1.537889 TCACCCACTCGTCCCCAAT 60.538 57.895 0.00 0.00 0.00 3.16
239 240 2.122769 TCACCCACTCGTCCCCAA 60.123 61.111 0.00 0.00 0.00 4.12
240 241 2.920912 GTCACCCACTCGTCCCCA 60.921 66.667 0.00 0.00 0.00 4.96
241 242 2.920912 TGTCACCCACTCGTCCCC 60.921 66.667 0.00 0.00 0.00 4.81
242 243 2.657237 CTGTCACCCACTCGTCCC 59.343 66.667 0.00 0.00 0.00 4.46
243 244 2.048127 GCTGTCACCCACTCGTCC 60.048 66.667 0.00 0.00 0.00 4.79
244 245 2.430921 CGCTGTCACCCACTCGTC 60.431 66.667 0.00 0.00 0.00 4.20
245 246 3.991051 CCGCTGTCACCCACTCGT 61.991 66.667 0.00 0.00 0.00 4.18
246 247 3.991051 ACCGCTGTCACCCACTCG 61.991 66.667 0.00 0.00 0.00 4.18
247 248 2.357517 CACCGCTGTCACCCACTC 60.358 66.667 0.00 0.00 0.00 3.51
248 249 2.842462 TCACCGCTGTCACCCACT 60.842 61.111 0.00 0.00 0.00 4.00
249 250 2.172483 ATCTCACCGCTGTCACCCAC 62.172 60.000 0.00 0.00 0.00 4.61
250 251 0.613572 TATCTCACCGCTGTCACCCA 60.614 55.000 0.00 0.00 0.00 4.51
251 252 0.535335 TTATCTCACCGCTGTCACCC 59.465 55.000 0.00 0.00 0.00 4.61
252 253 2.380084 TTTATCTCACCGCTGTCACC 57.620 50.000 0.00 0.00 0.00 4.02
253 254 3.994392 TCTTTTTATCTCACCGCTGTCAC 59.006 43.478 0.00 0.00 0.00 3.67
254 255 4.265904 TCTTTTTATCTCACCGCTGTCA 57.734 40.909 0.00 0.00 0.00 3.58
255 256 5.607119 TTTCTTTTTATCTCACCGCTGTC 57.393 39.130 0.00 0.00 0.00 3.51
256 257 5.106157 CCATTTCTTTTTATCTCACCGCTGT 60.106 40.000 0.00 0.00 0.00 4.40
257 258 5.335127 CCATTTCTTTTTATCTCACCGCTG 58.665 41.667 0.00 0.00 0.00 5.18
258 259 4.399303 CCCATTTCTTTTTATCTCACCGCT 59.601 41.667 0.00 0.00 0.00 5.52
259 260 4.398044 TCCCATTTCTTTTTATCTCACCGC 59.602 41.667 0.00 0.00 0.00 5.68
260 261 6.238759 GGATCCCATTTCTTTTTATCTCACCG 60.239 42.308 0.00 0.00 0.00 4.94
261 262 6.607198 TGGATCCCATTTCTTTTTATCTCACC 59.393 38.462 9.90 0.00 0.00 4.02
262 263 7.645058 TGGATCCCATTTCTTTTTATCTCAC 57.355 36.000 9.90 0.00 0.00 3.51
263 264 7.148086 CGTTGGATCCCATTTCTTTTTATCTCA 60.148 37.037 9.90 0.00 31.53 3.27
264 265 7.067008 TCGTTGGATCCCATTTCTTTTTATCTC 59.933 37.037 9.90 0.00 31.53 2.75
265 266 6.889722 TCGTTGGATCCCATTTCTTTTTATCT 59.110 34.615 9.90 0.00 31.53 1.98
266 267 7.095695 TCGTTGGATCCCATTTCTTTTTATC 57.904 36.000 9.90 0.00 31.53 1.75
267 268 6.096846 CCTCGTTGGATCCCATTTCTTTTTAT 59.903 38.462 9.90 0.00 38.35 1.40
268 269 5.417580 CCTCGTTGGATCCCATTTCTTTTTA 59.582 40.000 9.90 0.00 38.35 1.52
269 270 4.220602 CCTCGTTGGATCCCATTTCTTTTT 59.779 41.667 9.90 0.00 38.35 1.94
270 271 3.763897 CCTCGTTGGATCCCATTTCTTTT 59.236 43.478 9.90 0.00 38.35 2.27
271 272 3.010138 TCCTCGTTGGATCCCATTTCTTT 59.990 43.478 9.90 0.00 40.56 2.52
272 273 2.576191 TCCTCGTTGGATCCCATTTCTT 59.424 45.455 9.90 0.00 40.56 2.52
273 274 2.171448 CTCCTCGTTGGATCCCATTTCT 59.829 50.000 9.90 0.00 45.16 2.52
274 275 2.170607 TCTCCTCGTTGGATCCCATTTC 59.829 50.000 9.90 0.00 45.16 2.17
275 276 2.196595 TCTCCTCGTTGGATCCCATTT 58.803 47.619 9.90 0.00 45.16 2.32
276 277 1.879575 TCTCCTCGTTGGATCCCATT 58.120 50.000 9.90 0.00 45.16 3.16
277 278 1.974236 GATCTCCTCGTTGGATCCCAT 59.026 52.381 9.90 0.00 45.16 4.00
278 279 1.342975 TGATCTCCTCGTTGGATCCCA 60.343 52.381 9.90 0.00 45.16 4.37
279 280 1.414158 TGATCTCCTCGTTGGATCCC 58.586 55.000 9.90 0.00 45.16 3.85
280 281 2.352225 CGATGATCTCCTCGTTGGATCC 60.352 54.545 4.20 4.20 45.16 3.36
281 282 2.554462 TCGATGATCTCCTCGTTGGATC 59.446 50.000 11.00 0.00 45.16 3.36
282 283 2.587522 TCGATGATCTCCTCGTTGGAT 58.412 47.619 11.00 0.00 45.16 3.41
283 284 2.052782 TCGATGATCTCCTCGTTGGA 57.947 50.000 11.00 0.58 43.86 3.53
284 285 2.359214 TCTTCGATGATCTCCTCGTTGG 59.641 50.000 11.00 0.00 36.33 3.77
285 286 3.699779 TCTTCGATGATCTCCTCGTTG 57.300 47.619 11.00 6.98 36.33 4.10
286 287 4.339530 TCAATCTTCGATGATCTCCTCGTT 59.660 41.667 13.61 0.00 36.33 3.85
287 288 3.885901 TCAATCTTCGATGATCTCCTCGT 59.114 43.478 13.61 0.00 36.33 4.18
288 289 4.495911 TCAATCTTCGATGATCTCCTCG 57.504 45.455 13.61 0.43 36.25 4.63
295 296 6.705381 GTCCTTCTTGATCAATCTTCGATGAT 59.295 38.462 8.96 7.94 38.93 2.45
296 297 6.045318 GTCCTTCTTGATCAATCTTCGATGA 58.955 40.000 8.96 3.19 0.00 2.92
297 298 5.051173 CGTCCTTCTTGATCAATCTTCGATG 60.051 44.000 8.96 4.82 0.00 3.84
298 299 5.046529 CGTCCTTCTTGATCAATCTTCGAT 58.953 41.667 8.96 0.00 0.00 3.59
299 300 4.424626 CGTCCTTCTTGATCAATCTTCGA 58.575 43.478 8.96 0.00 0.00 3.71
300 301 3.553511 CCGTCCTTCTTGATCAATCTTCG 59.446 47.826 8.96 9.20 0.00 3.79
301 302 3.311048 GCCGTCCTTCTTGATCAATCTTC 59.689 47.826 8.96 0.00 0.00 2.87
302 303 3.274288 GCCGTCCTTCTTGATCAATCTT 58.726 45.455 8.96 0.00 0.00 2.40
303 304 2.739932 CGCCGTCCTTCTTGATCAATCT 60.740 50.000 8.96 0.00 0.00 2.40
304 305 1.594862 CGCCGTCCTTCTTGATCAATC 59.405 52.381 8.96 0.00 0.00 2.67
305 306 1.207089 TCGCCGTCCTTCTTGATCAAT 59.793 47.619 8.96 0.00 0.00 2.57
306 307 0.606096 TCGCCGTCCTTCTTGATCAA 59.394 50.000 8.12 8.12 0.00 2.57
307 308 0.108804 GTCGCCGTCCTTCTTGATCA 60.109 55.000 0.00 0.00 0.00 2.92
308 309 0.173708 AGTCGCCGTCCTTCTTGATC 59.826 55.000 0.00 0.00 0.00 2.92
309 310 0.108615 CAGTCGCCGTCCTTCTTGAT 60.109 55.000 0.00 0.00 0.00 2.57
310 311 1.289066 CAGTCGCCGTCCTTCTTGA 59.711 57.895 0.00 0.00 0.00 3.02
311 312 0.600255 AACAGTCGCCGTCCTTCTTG 60.600 55.000 0.00 0.00 0.00 3.02
312 313 0.963962 TAACAGTCGCCGTCCTTCTT 59.036 50.000 0.00 0.00 0.00 2.52
313 314 0.963962 TTAACAGTCGCCGTCCTTCT 59.036 50.000 0.00 0.00 0.00 2.85
314 315 1.458445 GTTTAACAGTCGCCGTCCTTC 59.542 52.381 0.00 0.00 0.00 3.46
315 316 1.505425 GTTTAACAGTCGCCGTCCTT 58.495 50.000 0.00 0.00 0.00 3.36
316 317 0.665369 CGTTTAACAGTCGCCGTCCT 60.665 55.000 0.00 0.00 0.00 3.85
317 318 0.940991 ACGTTTAACAGTCGCCGTCC 60.941 55.000 0.00 0.00 0.00 4.79
318 319 0.160182 CACGTTTAACAGTCGCCGTC 59.840 55.000 0.00 0.00 0.00 4.79
319 320 0.528249 ACACGTTTAACAGTCGCCGT 60.528 50.000 0.00 0.00 0.00 5.68
320 321 0.111442 CACACGTTTAACAGTCGCCG 60.111 55.000 0.00 0.00 0.00 6.46
323 324 2.033236 ACATGCACACGTTTAACAGTCG 60.033 45.455 0.00 0.00 0.00 4.18
452 456 3.710209 ACAAGATATATCCCTGCAGGC 57.290 47.619 28.39 11.76 34.51 4.85
468 473 7.145985 TGCTCTACTGAGTTACAAAGTACAAG 58.854 38.462 0.00 0.00 42.13 3.16
488 497 9.336171 GGAGACTTGAATTCTATTTAATGCTCT 57.664 33.333 7.05 0.00 0.00 4.09
543 565 2.045926 GGAGGTGTTCGCAGCCAT 60.046 61.111 0.00 0.00 46.03 4.40
544 566 3.240134 GAGGAGGTGTTCGCAGCCA 62.240 63.158 0.00 0.00 46.03 4.75
546 568 2.435059 GGAGGAGGTGTTCGCAGC 60.435 66.667 0.00 0.00 45.29 5.25
547 569 1.216710 GAGGAGGAGGTGTTCGCAG 59.783 63.158 0.00 0.00 0.00 5.18
548 570 2.283529 GGAGGAGGAGGTGTTCGCA 61.284 63.158 0.00 0.00 0.00 5.10
549 571 2.283529 TGGAGGAGGAGGTGTTCGC 61.284 63.158 0.00 0.00 0.00 4.70
550 572 1.592223 GTGGAGGAGGAGGTGTTCG 59.408 63.158 0.00 0.00 0.00 3.95
551 573 0.836400 TGGTGGAGGAGGAGGTGTTC 60.836 60.000 0.00 0.00 0.00 3.18
552 574 0.838122 CTGGTGGAGGAGGAGGTGTT 60.838 60.000 0.00 0.00 0.00 3.32
553 575 1.229336 CTGGTGGAGGAGGAGGTGT 60.229 63.158 0.00 0.00 0.00 4.16
731 769 1.488705 ATGCCGGGGTTGAACAGAGA 61.489 55.000 2.18 0.00 0.00 3.10
780 821 6.697641 TGTGGTCTTAGAAAATAGGAAGGT 57.302 37.500 0.00 0.00 0.00 3.50
794 835 4.157849 TGTGGTTTGTGATGTGGTCTTA 57.842 40.909 0.00 0.00 0.00 2.10
832 873 1.338973 GTGATAGTTGTATCGGCGGGA 59.661 52.381 7.21 0.00 38.37 5.14
871 913 1.179152 TAGCGGACGAGAACCATGAA 58.821 50.000 0.00 0.00 0.00 2.57
992 1034 2.040145 ACATGATCACACATGGTGTCCA 59.960 45.455 0.00 11.42 43.92 4.02
1079 1121 0.530650 GAGAATCATGAAGCGGGCGA 60.531 55.000 0.00 0.00 33.17 5.54
1124 1166 3.003793 TTCGAAGATAGACAGATCGCCTG 59.996 47.826 0.00 3.57 42.68 4.85
1138 1180 0.660595 CGGCGAGCGTATTCGAAGAT 60.661 55.000 0.00 0.00 43.03 2.40
1142 1184 2.549198 ATCCGGCGAGCGTATTCGA 61.549 57.895 9.30 0.00 43.03 3.71
1260 1303 1.741770 GCCAAGCACGACTCGGATT 60.742 57.895 2.98 0.00 0.00 3.01
1290 1333 1.975407 GAGGACGGTGTCGAAGGGA 60.975 63.158 0.00 0.00 40.11 4.20
1371 1414 4.367023 CCGTCGGTCAGGGCGAAA 62.367 66.667 2.08 0.00 0.00 3.46
1405 1448 2.750657 GGCCACCCATGCTAGAGCT 61.751 63.158 0.00 0.00 42.66 4.09
1438 1481 4.148825 GGAGGCGCGATCCACACT 62.149 66.667 21.68 1.84 36.79 3.55
1535 1582 1.761500 AAGGCCTTACGAACCGGTGT 61.761 55.000 18.87 5.07 0.00 4.16
1790 1861 9.401873 GCATAACGTGTACAATATGTAGTATCA 57.598 33.333 18.41 0.00 32.84 2.15
1921 2029 5.450550 GGCACCAATTAGGAGAAATTGTAGC 60.451 44.000 8.13 10.04 42.68 3.58
1989 2101 6.101332 CCATGAACCACTTCCAATTGTTATG 58.899 40.000 4.43 0.00 0.00 1.90
2037 2149 6.871224 GACCAGGTCATAGATCCCAAAGGAA 61.871 48.000 15.43 0.00 37.91 3.36
2129 2241 5.063880 TCCTTCTTAACAGTTCAAAGAGGC 58.936 41.667 0.00 0.00 31.30 4.70
2235 2353 4.774726 AGCAGATCTTAAAGACAGGAGTGA 59.225 41.667 0.00 0.00 0.00 3.41
2386 2505 3.749665 AGCTAGCTGCCATCTCTTTAG 57.250 47.619 18.57 0.00 44.23 1.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.