Multiple sequence alignment - TraesCS1A01G044100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G044100 chr1A 100.000 3284 0 0 1 3284 24940214 24943497 0.000000e+00 6065.0
1 TraesCS1A01G044100 chr1A 88.762 614 51 11 1746 2349 24562241 24561636 0.000000e+00 736.0
2 TraesCS1A01G044100 chr1A 88.216 611 55 11 1746 2349 24772546 24773146 0.000000e+00 713.0
3 TraesCS1A01G044100 chr1A 97.170 212 6 0 2806 3017 24942646 24942857 3.120000e-95 359.0
4 TraesCS1A01G044100 chr1A 97.170 212 6 0 2433 2644 24943019 24943230 3.120000e-95 359.0
5 TraesCS1A01G044100 chr1A 79.704 473 62 15 1 459 24768437 24768889 8.850000e-81 311.0
6 TraesCS1A01G044100 chr1A 97.110 173 5 0 2647 2819 24942697 24942869 3.210000e-75 292.0
7 TraesCS1A01G044100 chr1A 97.110 173 5 0 2484 2656 24942860 24943032 3.210000e-75 292.0
8 TraesCS1A01G044100 chr1A 97.516 161 4 0 2857 3017 24942860 24943020 3.230000e-70 276.0
9 TraesCS1A01G044100 chr1A 97.516 161 4 0 2647 2807 24943070 24943230 3.230000e-70 276.0
10 TraesCS1A01G044100 chr1A 83.451 284 40 7 1 279 24568606 24568325 1.170000e-64 257.0
11 TraesCS1A01G044100 chr1A 88.976 127 13 1 1352 1477 24562713 24562587 4.390000e-34 156.0
12 TraesCS1A01G044100 chr1A 87.500 112 13 1 1367 1477 24772093 24772204 9.560000e-26 128.0
13 TraesCS1A01G044100 chr1A 81.818 132 14 4 338 459 24568316 24568185 5.800000e-18 102.0
14 TraesCS1A01G044100 chr1D 96.111 2597 59 15 1 2584 24121576 24124143 0.000000e+00 4198.0
15 TraesCS1A01G044100 chr1D 88.707 611 54 9 1746 2349 23436214 23435612 0.000000e+00 732.0
16 TraesCS1A01G044100 chr1D 92.744 441 28 3 2140 2579 23996478 23996915 4.620000e-178 634.0
17 TraesCS1A01G044100 chr1D 79.281 473 64 16 1 459 23439369 23438917 1.920000e-77 300.0
18 TraesCS1A01G044100 chr1D 85.484 248 11 2 3044 3283 23997026 23997256 5.480000e-58 235.0
19 TraesCS1A01G044100 chr1D 92.857 154 10 1 2805 2957 24123990 24124143 4.270000e-54 222.0
20 TraesCS1A01G044100 chr1D 93.289 149 9 1 2805 2952 23996767 23996915 5.520000e-53 219.0
21 TraesCS1A01G044100 chr1D 92.708 96 7 0 2647 2742 23996820 23996915 4.420000e-29 139.0
22 TraesCS1A01G044100 chr1D 92.135 89 5 1 2955 3043 24124119 24124205 1.240000e-24 124.0
23 TraesCS1A01G044100 chr1D 93.827 81 4 1 3203 3283 24124372 24124451 1.600000e-23 121.0
24 TraesCS1A01G044100 chr1D 96.491 57 2 0 2582 2638 24124119 24124175 9.700000e-16 95.3
25 TraesCS1A01G044100 chr1D 96.491 57 2 0 2745 2801 24124119 24124175 9.700000e-16 95.3
26 TraesCS1A01G044100 chr1D 90.625 64 6 0 1349 1412 23996420 23996483 5.840000e-13 86.1
27 TraesCS1A01G044100 chr1B 95.424 2207 63 13 1 2192 39653621 39655804 0.000000e+00 3482.0
28 TraesCS1A01G044100 chr1B 91.648 443 31 3 1756 2192 39582658 39582216 2.800000e-170 608.0
29 TraesCS1A01G044100 chr1B 77.582 397 66 11 1 393 39583880 39583503 5.520000e-53 219.0
30 TraesCS1A01G044100 chr3B 94.253 174 10 0 1496 1669 26534103 26533930 1.940000e-67 267.0
31 TraesCS1A01G044100 chr3B 96.552 58 2 0 1690 1747 26533946 26533889 2.700000e-16 97.1
32 TraesCS1A01G044100 chr6B 92.529 174 13 0 1496 1669 1947413 1947240 1.960000e-62 250.0
33 TraesCS1A01G044100 chr6B 96.552 58 2 0 1690 1747 1947256 1947199 2.700000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G044100 chr1A 24940214 24943497 3283 False 1131.285714 6065 97.656 1 3284 7 chr1A.!!$F2 3283
1 TraesCS1A01G044100 chr1A 24561636 24562713 1077 True 446.000000 736 88.869 1352 2349 2 chr1A.!!$R1 997
2 TraesCS1A01G044100 chr1A 24768437 24773146 4709 False 384.000000 713 85.140 1 2349 3 chr1A.!!$F1 2348
3 TraesCS1A01G044100 chr1D 24121576 24124451 2875 False 809.266667 4198 94.652 1 3283 6 chr1D.!!$F2 3282
4 TraesCS1A01G044100 chr1D 23435612 23439369 3757 True 516.000000 732 83.994 1 2349 2 chr1D.!!$R1 2348
5 TraesCS1A01G044100 chr1D 23996420 23997256 836 False 262.620000 634 90.970 1349 3283 5 chr1D.!!$F1 1934
6 TraesCS1A01G044100 chr1B 39653621 39655804 2183 False 3482.000000 3482 95.424 1 2192 1 chr1B.!!$F1 2191
7 TraesCS1A01G044100 chr1B 39582216 39583880 1664 True 413.500000 608 84.615 1 2192 2 chr1B.!!$R1 2191

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
797 2357 8.891671 AATTTGTGCTTCTGAACATGTATTTT 57.108 26.923 0.0 0.0 30.6 1.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2788 5499 0.039798 TACGACAAGCACACGAGACC 60.04 55.0 0.0 0.0 0.0 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
797 2357 8.891671 AATTTGTGCTTCTGAACATGTATTTT 57.108 26.923 0.00 0.00 30.60 1.82
1020 2584 3.763671 CAGGTGCCCTGTTTGGAC 58.236 61.111 11.85 0.00 45.82 4.02
1056 2620 5.582269 TGTTTCATCGATTCTCAAGGATCAC 59.418 40.000 0.00 0.00 0.00 3.06
1116 2680 2.413796 CCTGTATGCTTTTTACGCGTCA 59.586 45.455 18.63 6.81 0.00 4.35
1153 2717 5.788450 ACGATTATGGTTTTGCAATTCCAA 58.212 33.333 21.30 10.68 33.55 3.53
1481 4034 9.474920 TTTATTGTTTGATTTTGATGACCAGAC 57.525 29.630 0.00 0.00 0.00 3.51
1482 4035 5.452078 TGTTTGATTTTGATGACCAGACC 57.548 39.130 0.00 0.00 0.00 3.85
1483 4036 5.139727 TGTTTGATTTTGATGACCAGACCT 58.860 37.500 0.00 0.00 0.00 3.85
1484 4037 5.241506 TGTTTGATTTTGATGACCAGACCTC 59.758 40.000 0.00 0.00 0.00 3.85
1673 4326 6.870439 GCCAATTTAATATCTCAATGCCCTTC 59.130 38.462 0.00 0.00 0.00 3.46
1721 4417 3.969802 GCAGTGTTGCCGCTTGCT 61.970 61.111 0.00 0.00 44.74 3.91
1744 4440 3.821033 GGTAGGCTTCACTGAAACATGTT 59.179 43.478 4.92 4.92 0.00 2.71
1905 4604 4.122776 CCCGGTCTAAAGTCAAGATCATG 58.877 47.826 0.00 0.00 0.00 3.07
1911 4612 2.134789 AAGTCAAGATCATGCCCCAC 57.865 50.000 0.00 0.00 0.00 4.61
1912 4613 0.994247 AGTCAAGATCATGCCCCACA 59.006 50.000 0.00 0.00 0.00 4.17
1965 4666 4.391405 CAAGATGGCTTGGAATAAACCC 57.609 45.455 0.00 0.00 46.13 4.11
2092 4796 0.613853 TAGTAGCAAGCCCGGTGAGT 60.614 55.000 0.00 0.00 0.00 3.41
2101 4805 0.872388 GCCCGGTGAGTTGTTTACTG 59.128 55.000 0.00 0.00 37.17 2.74
2102 4806 1.812708 GCCCGGTGAGTTGTTTACTGT 60.813 52.381 0.00 0.00 37.17 3.55
2230 4940 2.280628 CGGTTAATTCTCAGCCCAGAC 58.719 52.381 0.00 0.00 0.00 3.51
2351 5061 2.071540 TCAAGTTTCTGAGCATGCTCG 58.928 47.619 35.68 29.58 45.48 5.03
2368 5078 0.958382 TCGTGTTATGCAAGGCACCC 60.958 55.000 10.78 0.00 43.04 4.61
2369 5079 0.960364 CGTGTTATGCAAGGCACCCT 60.960 55.000 10.78 0.00 43.04 4.34
2405 5115 7.968405 CAGACATACTTATATGCGTATGCTGTA 59.032 37.037 22.18 8.76 44.15 2.74
2415 5125 3.067106 GCGTATGCTGTATGTAATGCCT 58.933 45.455 0.00 0.00 38.39 4.75
2419 5129 3.912496 TGCTGTATGTAATGCCTCTGT 57.088 42.857 0.00 0.00 0.00 3.41
2479 5190 4.360951 TTGTTCTCTTAATCCCGGTTGT 57.639 40.909 0.00 0.00 0.00 3.32
2505 5216 0.326595 TGAATTCCTGTTAGCGCCCA 59.673 50.000 2.29 0.00 0.00 5.36
2542 5253 6.901300 TGAGAACCTTAACTGTATACTCCCAT 59.099 38.462 4.17 0.00 0.00 4.00
2579 5290 6.001460 TCCGGTTGTTTCAATTCAAGAGTAT 58.999 36.000 0.00 0.00 0.00 2.12
2580 5291 7.162761 TCCGGTTGTTTCAATTCAAGAGTATA 58.837 34.615 0.00 0.00 0.00 1.47
2581 5292 7.333423 TCCGGTTGTTTCAATTCAAGAGTATAG 59.667 37.037 0.00 0.00 0.00 1.31
2582 5293 7.119262 CCGGTTGTTTCAATTCAAGAGTATAGT 59.881 37.037 0.00 0.00 0.00 2.12
2583 5294 8.504005 CGGTTGTTTCAATTCAAGAGTATAGTT 58.496 33.333 0.00 0.00 0.00 2.24
2584 5295 9.612620 GGTTGTTTCAATTCAAGAGTATAGTTG 57.387 33.333 0.00 0.00 0.00 3.16
2609 5320 9.996554 TGTTTCAATTCAAGAGTATAGTTCAGA 57.003 29.630 0.00 0.00 0.00 3.27
2632 5343 1.215647 GTTGAGCCGATGGTCTCGT 59.784 57.895 0.00 0.00 46.18 4.18
2633 5344 1.078759 GTTGAGCCGATGGTCTCGTG 61.079 60.000 0.00 0.00 46.18 4.35
2634 5345 1.532604 TTGAGCCGATGGTCTCGTGT 61.533 55.000 0.00 0.00 46.18 4.49
2635 5346 1.517257 GAGCCGATGGTCTCGTGTG 60.517 63.158 0.00 0.00 46.18 3.82
2636 5347 3.188786 GCCGATGGTCTCGTGTGC 61.189 66.667 0.00 0.00 46.18 4.57
2637 5348 2.573869 CCGATGGTCTCGTGTGCT 59.426 61.111 0.00 0.00 46.18 4.40
2638 5349 1.079819 CCGATGGTCTCGTGTGCTT 60.080 57.895 0.00 0.00 46.18 3.91
2639 5350 1.354337 CCGATGGTCTCGTGTGCTTG 61.354 60.000 0.00 0.00 46.18 4.01
2640 5351 0.667487 CGATGGTCTCGTGTGCTTGT 60.667 55.000 0.00 0.00 42.56 3.16
2641 5352 1.071605 GATGGTCTCGTGTGCTTGTC 58.928 55.000 0.00 0.00 0.00 3.18
2642 5353 0.667487 ATGGTCTCGTGTGCTTGTCG 60.667 55.000 0.00 0.00 0.00 4.35
2643 5354 1.299926 GGTCTCGTGTGCTTGTCGT 60.300 57.895 0.00 0.00 0.00 4.34
2644 5355 0.039798 GGTCTCGTGTGCTTGTCGTA 60.040 55.000 0.00 0.00 0.00 3.43
2645 5356 1.402456 GGTCTCGTGTGCTTGTCGTAT 60.402 52.381 0.00 0.00 0.00 3.06
2646 5357 2.325761 GTCTCGTGTGCTTGTCGTATT 58.674 47.619 0.00 0.00 0.00 1.89
2647 5358 2.341760 GTCTCGTGTGCTTGTCGTATTC 59.658 50.000 0.00 0.00 0.00 1.75
2648 5359 1.317611 CTCGTGTGCTTGTCGTATTCG 59.682 52.381 0.00 0.00 38.55 3.34
2649 5360 1.069091 TCGTGTGCTTGTCGTATTCGA 60.069 47.619 0.00 0.00 44.12 3.71
2650 5361 1.317611 CGTGTGCTTGTCGTATTCGAG 59.682 52.381 0.00 0.00 46.96 4.04
2651 5362 2.592194 GTGTGCTTGTCGTATTCGAGA 58.408 47.619 0.00 0.00 46.96 4.04
2652 5363 2.984471 GTGTGCTTGTCGTATTCGAGAA 59.016 45.455 4.34 4.34 46.96 2.87
2653 5364 3.612860 GTGTGCTTGTCGTATTCGAGAAT 59.387 43.478 4.83 3.67 45.48 2.40
2654 5365 4.091509 GTGTGCTTGTCGTATTCGAGAATT 59.908 41.667 4.83 0.00 45.48 2.17
2655 5366 4.326278 TGTGCTTGTCGTATTCGAGAATTC 59.674 41.667 4.83 0.00 45.48 2.17
2656 5367 3.863424 TGCTTGTCGTATTCGAGAATTCC 59.137 43.478 4.83 0.00 45.48 3.01
2657 5368 4.113354 GCTTGTCGTATTCGAGAATTCCT 58.887 43.478 4.83 0.00 45.48 3.36
2658 5369 4.026475 GCTTGTCGTATTCGAGAATTCCTG 60.026 45.833 4.83 0.00 45.48 3.86
2659 5370 4.713824 TGTCGTATTCGAGAATTCCTGT 57.286 40.909 0.65 0.00 46.96 4.00
2660 5371 5.068234 TGTCGTATTCGAGAATTCCTGTT 57.932 39.130 0.65 0.00 46.96 3.16
2661 5372 6.198650 TGTCGTATTCGAGAATTCCTGTTA 57.801 37.500 0.65 0.00 46.96 2.41
2662 5373 6.263344 TGTCGTATTCGAGAATTCCTGTTAG 58.737 40.000 0.65 0.00 46.96 2.34
2663 5374 5.173492 GTCGTATTCGAGAATTCCTGTTAGC 59.827 44.000 0.65 0.00 46.96 3.09
2664 5375 4.146616 CGTATTCGAGAATTCCTGTTAGCG 59.853 45.833 0.65 0.00 39.71 4.26
2665 5376 1.922570 TCGAGAATTCCTGTTAGCGC 58.077 50.000 0.00 0.00 0.00 5.92
2666 5377 0.931005 CGAGAATTCCTGTTAGCGCC 59.069 55.000 2.29 0.00 0.00 6.53
2667 5378 1.300481 GAGAATTCCTGTTAGCGCCC 58.700 55.000 2.29 0.00 0.00 6.13
2668 5379 0.618458 AGAATTCCTGTTAGCGCCCA 59.382 50.000 2.29 0.00 0.00 5.36
2669 5380 1.212935 AGAATTCCTGTTAGCGCCCAT 59.787 47.619 2.29 0.00 0.00 4.00
2670 5381 2.438021 AGAATTCCTGTTAGCGCCCATA 59.562 45.455 2.29 0.00 0.00 2.74
2671 5382 2.256117 ATTCCTGTTAGCGCCCATAC 57.744 50.000 2.29 0.00 0.00 2.39
2672 5383 0.179468 TTCCTGTTAGCGCCCATACC 59.821 55.000 2.29 0.00 0.00 2.73
2673 5384 0.978667 TCCTGTTAGCGCCCATACCA 60.979 55.000 2.29 0.00 0.00 3.25
2674 5385 0.108585 CCTGTTAGCGCCCATACCAT 59.891 55.000 2.29 0.00 0.00 3.55
2675 5386 1.346395 CCTGTTAGCGCCCATACCATA 59.654 52.381 2.29 0.00 0.00 2.74
2676 5387 2.224426 CCTGTTAGCGCCCATACCATAA 60.224 50.000 2.29 0.00 0.00 1.90
2677 5388 2.806244 CTGTTAGCGCCCATACCATAAC 59.194 50.000 2.29 4.27 0.00 1.89
2678 5389 2.170817 TGTTAGCGCCCATACCATAACA 59.829 45.455 2.29 7.17 32.38 2.41
2679 5390 3.207778 GTTAGCGCCCATACCATAACAA 58.792 45.455 2.29 0.00 0.00 2.83
2680 5391 2.656947 AGCGCCCATACCATAACAAT 57.343 45.000 2.29 0.00 0.00 2.71
2681 5392 2.229792 AGCGCCCATACCATAACAATG 58.770 47.619 2.29 0.00 0.00 2.82
2682 5393 2.158682 AGCGCCCATACCATAACAATGA 60.159 45.455 2.29 0.00 0.00 2.57
2683 5394 2.226437 GCGCCCATACCATAACAATGAG 59.774 50.000 0.00 0.00 0.00 2.90
2684 5395 3.738982 CGCCCATACCATAACAATGAGA 58.261 45.455 0.00 0.00 0.00 3.27
2685 5396 4.133820 CGCCCATACCATAACAATGAGAA 58.866 43.478 0.00 0.00 0.00 2.87
2686 5397 4.024048 CGCCCATACCATAACAATGAGAAC 60.024 45.833 0.00 0.00 0.00 3.01
2687 5398 4.278419 GCCCATACCATAACAATGAGAACC 59.722 45.833 0.00 0.00 0.00 3.62
2688 5399 5.694995 CCCATACCATAACAATGAGAACCT 58.305 41.667 0.00 0.00 0.00 3.50
2689 5400 6.129179 CCCATACCATAACAATGAGAACCTT 58.871 40.000 0.00 0.00 0.00 3.50
2690 5401 7.287061 CCCATACCATAACAATGAGAACCTTA 58.713 38.462 0.00 0.00 0.00 2.69
2691 5402 7.777910 CCCATACCATAACAATGAGAACCTTAA 59.222 37.037 0.00 0.00 0.00 1.85
2692 5403 8.621286 CCATACCATAACAATGAGAACCTTAAC 58.379 37.037 0.00 0.00 0.00 2.01
2693 5404 9.396022 CATACCATAACAATGAGAACCTTAACT 57.604 33.333 0.00 0.00 0.00 2.24
2694 5405 7.687941 ACCATAACAATGAGAACCTTAACTG 57.312 36.000 0.00 0.00 0.00 3.16
2695 5406 7.231467 ACCATAACAATGAGAACCTTAACTGT 58.769 34.615 0.00 0.00 0.00 3.55
2696 5407 8.380099 ACCATAACAATGAGAACCTTAACTGTA 58.620 33.333 0.00 0.00 0.00 2.74
2697 5408 9.396022 CCATAACAATGAGAACCTTAACTGTAT 57.604 33.333 0.00 0.00 0.00 2.29
2701 5412 9.654663 AACAATGAGAACCTTAACTGTATACTC 57.345 33.333 4.17 0.00 0.00 2.59
2702 5413 8.258708 ACAATGAGAACCTTAACTGTATACTCC 58.741 37.037 4.17 0.00 0.00 3.85
2703 5414 6.786967 TGAGAACCTTAACTGTATACTCCC 57.213 41.667 4.17 0.00 0.00 4.30
2704 5415 5.659971 TGAGAACCTTAACTGTATACTCCCC 59.340 44.000 4.17 0.00 0.00 4.81
2705 5416 5.851418 AGAACCTTAACTGTATACTCCCCT 58.149 41.667 4.17 0.00 0.00 4.79
2706 5417 6.989894 AGAACCTTAACTGTATACTCCCCTA 58.010 40.000 4.17 0.00 0.00 3.53
2707 5418 7.068061 AGAACCTTAACTGTATACTCCCCTAG 58.932 42.308 4.17 0.00 0.00 3.02
2708 5419 6.603110 ACCTTAACTGTATACTCCCCTAGA 57.397 41.667 4.17 0.00 0.00 2.43
2709 5420 6.989894 ACCTTAACTGTATACTCCCCTAGAA 58.010 40.000 4.17 0.00 0.00 2.10
2710 5421 7.602868 ACCTTAACTGTATACTCCCCTAGAAT 58.397 38.462 4.17 0.00 0.00 2.40
2711 5422 8.740512 ACCTTAACTGTATACTCCCCTAGAATA 58.259 37.037 4.17 0.00 0.00 1.75
2712 5423 9.597681 CCTTAACTGTATACTCCCCTAGAATAA 57.402 37.037 4.17 0.00 0.00 1.40
2716 5427 9.503369 AACTGTATACTCCCCTAGAATAACTTT 57.497 33.333 4.17 0.00 0.00 2.66
2717 5428 9.145442 ACTGTATACTCCCCTAGAATAACTTTC 57.855 37.037 4.17 0.00 0.00 2.62
2718 5429 9.369672 CTGTATACTCCCCTAGAATAACTTTCT 57.630 37.037 4.17 0.00 0.00 2.52
2719 5430 9.364653 TGTATACTCCCCTAGAATAACTTTCTC 57.635 37.037 4.17 0.00 0.00 2.87
2720 5431 7.859026 ATACTCCCCTAGAATAACTTTCTCC 57.141 40.000 0.00 0.00 0.00 3.71
2721 5432 4.650131 ACTCCCCTAGAATAACTTTCTCCG 59.350 45.833 0.00 0.00 0.00 4.63
2722 5433 3.965347 TCCCCTAGAATAACTTTCTCCGG 59.035 47.826 0.00 0.00 0.00 5.14
2723 5434 3.710165 CCCCTAGAATAACTTTCTCCGGT 59.290 47.826 0.00 0.00 0.00 5.28
2724 5435 4.163649 CCCCTAGAATAACTTTCTCCGGTT 59.836 45.833 0.00 0.00 0.00 4.44
2725 5436 5.116882 CCCTAGAATAACTTTCTCCGGTTG 58.883 45.833 0.00 0.00 0.00 3.77
2726 5437 5.338137 CCCTAGAATAACTTTCTCCGGTTGT 60.338 44.000 0.00 0.00 0.00 3.32
2727 5438 6.171213 CCTAGAATAACTTTCTCCGGTTGTT 58.829 40.000 0.00 3.62 31.40 2.83
2728 5439 6.653740 CCTAGAATAACTTTCTCCGGTTGTTT 59.346 38.462 0.00 0.00 29.50 2.83
2729 5440 6.555812 AGAATAACTTTCTCCGGTTGTTTC 57.444 37.500 0.00 0.00 29.50 2.78
2730 5441 6.059484 AGAATAACTTTCTCCGGTTGTTTCA 58.941 36.000 0.00 0.00 29.50 2.69
2731 5442 6.544564 AGAATAACTTTCTCCGGTTGTTTCAA 59.455 34.615 0.00 0.00 29.50 2.69
2732 5443 6.894339 ATAACTTTCTCCGGTTGTTTCAAT 57.106 33.333 0.00 0.00 0.00 2.57
2733 5444 5.592104 AACTTTCTCCGGTTGTTTCAATT 57.408 34.783 0.00 0.00 0.00 2.32
2734 5445 5.183014 ACTTTCTCCGGTTGTTTCAATTC 57.817 39.130 0.00 0.00 0.00 2.17
2735 5446 4.642885 ACTTTCTCCGGTTGTTTCAATTCA 59.357 37.500 0.00 0.00 0.00 2.57
2736 5447 5.126384 ACTTTCTCCGGTTGTTTCAATTCAA 59.874 36.000 0.00 0.00 0.00 2.69
2737 5448 4.829064 TCTCCGGTTGTTTCAATTCAAG 57.171 40.909 0.00 0.00 0.00 3.02
2738 5449 4.456535 TCTCCGGTTGTTTCAATTCAAGA 58.543 39.130 0.00 0.00 0.00 3.02
2739 5450 4.515191 TCTCCGGTTGTTTCAATTCAAGAG 59.485 41.667 0.00 0.00 0.00 2.85
2740 5451 4.204012 TCCGGTTGTTTCAATTCAAGAGT 58.796 39.130 0.00 0.00 0.00 3.24
2741 5452 5.369833 TCCGGTTGTTTCAATTCAAGAGTA 58.630 37.500 0.00 0.00 0.00 2.59
2742 5453 6.001460 TCCGGTTGTTTCAATTCAAGAGTAT 58.999 36.000 0.00 0.00 0.00 2.12
2743 5454 7.162761 TCCGGTTGTTTCAATTCAAGAGTATA 58.837 34.615 0.00 0.00 0.00 1.47
2744 5455 7.333423 TCCGGTTGTTTCAATTCAAGAGTATAG 59.667 37.037 0.00 0.00 0.00 1.31
2745 5456 7.119262 CCGGTTGTTTCAATTCAAGAGTATAGT 59.881 37.037 0.00 0.00 0.00 2.12
2746 5457 8.504005 CGGTTGTTTCAATTCAAGAGTATAGTT 58.496 33.333 0.00 0.00 0.00 2.24
2747 5458 9.612620 GGTTGTTTCAATTCAAGAGTATAGTTG 57.387 33.333 0.00 0.00 0.00 3.16
2772 5483 9.996554 TGTTTCAATTCAAGAGTATAGTTCAGA 57.003 29.630 0.00 0.00 0.00 3.27
2774 5485 8.689251 TTCAATTCAAGAGTATAGTTCAGACG 57.311 34.615 0.00 0.00 0.00 4.18
2775 5486 7.258441 TCAATTCAAGAGTATAGTTCAGACGG 58.742 38.462 0.00 0.00 0.00 4.79
2776 5487 6.777213 ATTCAAGAGTATAGTTCAGACGGT 57.223 37.500 0.00 0.00 0.00 4.83
2777 5488 5.562506 TCAAGAGTATAGTTCAGACGGTG 57.437 43.478 0.00 0.00 0.00 4.94
2778 5489 5.008331 TCAAGAGTATAGTTCAGACGGTGT 58.992 41.667 0.00 0.00 0.00 4.16
2779 5490 5.475909 TCAAGAGTATAGTTCAGACGGTGTT 59.524 40.000 0.00 0.00 0.00 3.32
2780 5491 5.312120 AGAGTATAGTTCAGACGGTGTTG 57.688 43.478 0.00 0.00 0.00 3.33
2781 5492 5.008331 AGAGTATAGTTCAGACGGTGTTGA 58.992 41.667 0.00 0.00 0.00 3.18
2782 5493 5.124138 AGAGTATAGTTCAGACGGTGTTGAG 59.876 44.000 0.00 0.00 0.00 3.02
2783 5494 2.433868 TAGTTCAGACGGTGTTGAGC 57.566 50.000 0.00 0.00 0.00 4.26
2784 5495 0.249911 AGTTCAGACGGTGTTGAGCC 60.250 55.000 0.00 0.00 0.00 4.70
2791 5502 3.890674 GGTGTTGAGCCGATGGTC 58.109 61.111 0.00 0.00 39.48 4.02
2792 5503 1.296715 GGTGTTGAGCCGATGGTCT 59.703 57.895 0.00 0.00 39.75 3.85
2793 5504 0.741221 GGTGTTGAGCCGATGGTCTC 60.741 60.000 0.00 1.81 39.75 3.36
2795 5506 1.215647 GTTGAGCCGATGGTCTCGT 59.784 57.895 0.00 0.00 46.18 4.18
2796 5507 1.078759 GTTGAGCCGATGGTCTCGTG 61.079 60.000 0.00 0.00 46.18 4.35
2797 5508 1.532604 TTGAGCCGATGGTCTCGTGT 61.533 55.000 0.00 0.00 46.18 4.49
2798 5509 1.517257 GAGCCGATGGTCTCGTGTG 60.517 63.158 0.00 0.00 46.18 3.82
2799 5510 3.188786 GCCGATGGTCTCGTGTGC 61.189 66.667 0.00 0.00 46.18 4.57
2800 5511 2.573869 CCGATGGTCTCGTGTGCT 59.426 61.111 0.00 0.00 46.18 4.40
2801 5512 1.079819 CCGATGGTCTCGTGTGCTT 60.080 57.895 0.00 0.00 46.18 3.91
2802 5513 1.354337 CCGATGGTCTCGTGTGCTTG 61.354 60.000 0.00 0.00 46.18 4.01
2803 5514 0.667487 CGATGGTCTCGTGTGCTTGT 60.667 55.000 0.00 0.00 42.56 3.16
2804 5515 1.071605 GATGGTCTCGTGTGCTTGTC 58.928 55.000 0.00 0.00 0.00 3.18
2805 5516 0.667487 ATGGTCTCGTGTGCTTGTCG 60.667 55.000 0.00 0.00 0.00 4.35
2806 5517 1.299926 GGTCTCGTGTGCTTGTCGT 60.300 57.895 0.00 0.00 0.00 4.34
2807 5518 0.039798 GGTCTCGTGTGCTTGTCGTA 60.040 55.000 0.00 0.00 0.00 3.43
2808 5519 1.402456 GGTCTCGTGTGCTTGTCGTAT 60.402 52.381 0.00 0.00 0.00 3.06
2809 5520 2.325761 GTCTCGTGTGCTTGTCGTATT 58.674 47.619 0.00 0.00 0.00 1.89
2810 5521 2.341760 GTCTCGTGTGCTTGTCGTATTC 59.658 50.000 0.00 0.00 0.00 1.75
2811 5522 1.317611 CTCGTGTGCTTGTCGTATTCG 59.682 52.381 0.00 0.00 38.55 3.34
2812 5523 0.246757 CGTGTGCTTGTCGTATTCGC 60.247 55.000 0.00 0.00 36.96 4.70
2813 5524 1.068474 GTGTGCTTGTCGTATTCGCT 58.932 50.000 0.00 0.00 36.96 4.93
2814 5525 2.256174 GTGTGCTTGTCGTATTCGCTA 58.744 47.619 0.00 0.00 36.96 4.26
2815 5526 2.664568 GTGTGCTTGTCGTATTCGCTAA 59.335 45.455 0.00 0.00 36.96 3.09
2816 5527 3.306166 GTGTGCTTGTCGTATTCGCTAAT 59.694 43.478 0.00 0.00 36.96 1.73
2817 5528 3.930229 TGTGCTTGTCGTATTCGCTAATT 59.070 39.130 0.00 0.00 36.96 1.40
2818 5529 4.032445 TGTGCTTGTCGTATTCGCTAATTC 59.968 41.667 0.00 0.00 36.96 2.17
2819 5530 4.267928 GTGCTTGTCGTATTCGCTAATTCT 59.732 41.667 0.00 0.00 36.96 2.40
2820 5531 4.868171 TGCTTGTCGTATTCGCTAATTCTT 59.132 37.500 0.00 0.00 36.96 2.52
2821 5532 5.350365 TGCTTGTCGTATTCGCTAATTCTTT 59.650 36.000 0.00 0.00 36.96 2.52
2822 5533 6.128391 TGCTTGTCGTATTCGCTAATTCTTTT 60.128 34.615 0.00 0.00 36.96 2.27
2823 5534 6.408325 GCTTGTCGTATTCGCTAATTCTTTTC 59.592 38.462 0.00 0.00 36.96 2.29
2824 5535 7.591006 TTGTCGTATTCGCTAATTCTTTTCT 57.409 32.000 0.00 0.00 36.96 2.52
2825 5536 7.218145 TGTCGTATTCGCTAATTCTTTTCTC 57.782 36.000 0.00 0.00 36.96 2.87
2826 5537 6.020916 TGTCGTATTCGCTAATTCTTTTCTCG 60.021 38.462 0.00 0.00 36.96 4.04
2827 5538 6.195983 GTCGTATTCGCTAATTCTTTTCTCGA 59.804 38.462 0.00 0.00 36.96 4.04
2828 5539 6.414109 TCGTATTCGCTAATTCTTTTCTCGAG 59.586 38.462 5.93 5.93 36.96 4.04
2829 5540 4.842139 TTCGCTAATTCTTTTCTCGAGC 57.158 40.909 7.81 0.00 0.00 5.03
2830 5541 3.845178 TCGCTAATTCTTTTCTCGAGCA 58.155 40.909 7.81 0.00 0.00 4.26
2831 5542 4.433615 TCGCTAATTCTTTTCTCGAGCAT 58.566 39.130 7.81 0.00 0.00 3.79
2832 5543 4.870426 TCGCTAATTCTTTTCTCGAGCATT 59.130 37.500 7.81 1.86 0.00 3.56
2833 5544 4.960354 CGCTAATTCTTTTCTCGAGCATTG 59.040 41.667 7.81 0.00 0.00 2.82
2834 5545 5.446473 CGCTAATTCTTTTCTCGAGCATTGT 60.446 40.000 7.81 0.00 0.00 2.71
2835 5546 6.317857 GCTAATTCTTTTCTCGAGCATTGTT 58.682 36.000 7.81 0.00 0.00 2.83
2836 5547 6.467364 GCTAATTCTTTTCTCGAGCATTGTTC 59.533 38.462 7.81 0.00 0.00 3.18
2837 5548 6.566197 AATTCTTTTCTCGAGCATTGTTCT 57.434 33.333 7.81 0.00 0.00 3.01
2838 5549 5.597813 TTCTTTTCTCGAGCATTGTTCTC 57.402 39.130 7.81 0.00 0.00 2.87
2839 5550 4.887748 TCTTTTCTCGAGCATTGTTCTCT 58.112 39.130 7.81 0.00 0.00 3.10
2840 5551 5.300752 TCTTTTCTCGAGCATTGTTCTCTT 58.699 37.500 7.81 0.00 0.00 2.85
2841 5552 6.455647 TCTTTTCTCGAGCATTGTTCTCTTA 58.544 36.000 7.81 0.00 0.00 2.10
2842 5553 6.929049 TCTTTTCTCGAGCATTGTTCTCTTAA 59.071 34.615 7.81 0.00 0.00 1.85
2843 5554 7.604164 TCTTTTCTCGAGCATTGTTCTCTTAAT 59.396 33.333 7.81 0.00 0.00 1.40
2844 5555 6.893958 TTCTCGAGCATTGTTCTCTTAATC 57.106 37.500 7.81 0.00 0.00 1.75
2845 5556 5.352284 TCTCGAGCATTGTTCTCTTAATCC 58.648 41.667 7.81 0.00 0.00 3.01
2846 5557 4.442706 TCGAGCATTGTTCTCTTAATCCC 58.557 43.478 0.00 0.00 0.00 3.85
2847 5558 3.246226 CGAGCATTGTTCTCTTAATCCCG 59.754 47.826 0.00 0.00 0.00 5.14
2848 5559 3.545703 AGCATTGTTCTCTTAATCCCGG 58.454 45.455 0.00 0.00 0.00 5.73
2849 5560 3.054361 AGCATTGTTCTCTTAATCCCGGT 60.054 43.478 0.00 0.00 0.00 5.28
2850 5561 3.694566 GCATTGTTCTCTTAATCCCGGTT 59.305 43.478 0.00 0.00 0.00 4.44
2851 5562 4.438744 GCATTGTTCTCTTAATCCCGGTTG 60.439 45.833 0.00 0.00 0.00 3.77
2852 5563 3.343941 TGTTCTCTTAATCCCGGTTGG 57.656 47.619 0.00 0.00 0.00 3.77
2853 5564 2.014857 GTTCTCTTAATCCCGGTTGGC 58.985 52.381 0.00 0.00 0.00 4.52
2854 5565 1.281419 TCTCTTAATCCCGGTTGGCA 58.719 50.000 0.00 0.00 0.00 4.92
2855 5566 1.631388 TCTCTTAATCCCGGTTGGCAA 59.369 47.619 0.00 0.00 0.00 4.52
2856 5567 2.241176 TCTCTTAATCCCGGTTGGCAAT 59.759 45.455 1.92 0.00 0.00 3.56
2857 5568 2.618709 CTCTTAATCCCGGTTGGCAATC 59.381 50.000 1.92 0.30 0.00 2.67
2858 5569 1.333619 CTTAATCCCGGTTGGCAATCG 59.666 52.381 25.23 25.23 0.00 3.34
2859 5570 0.253610 TAATCCCGGTTGGCAATCGT 59.746 50.000 28.86 14.66 0.00 3.73
2860 5571 1.312371 AATCCCGGTTGGCAATCGTG 61.312 55.000 28.86 19.92 0.00 4.35
2861 5572 2.191786 ATCCCGGTTGGCAATCGTGA 62.192 55.000 28.86 24.49 0.00 4.35
2862 5573 1.969064 CCCGGTTGGCAATCGTGAA 60.969 57.895 28.86 0.00 0.00 3.18
2863 5574 1.312371 CCCGGTTGGCAATCGTGAAT 61.312 55.000 28.86 0.00 0.00 2.57
2864 5575 0.525761 CCGGTTGGCAATCGTGAATT 59.474 50.000 28.86 0.00 0.00 2.17
2865 5576 1.467374 CCGGTTGGCAATCGTGAATTC 60.467 52.381 28.86 0.00 0.00 2.17
2866 5577 1.467374 CGGTTGGCAATCGTGAATTCC 60.467 52.381 24.02 6.21 0.00 3.01
2867 5578 1.818674 GGTTGGCAATCGTGAATTCCT 59.181 47.619 1.92 0.00 0.00 3.36
2868 5579 3.013921 GGTTGGCAATCGTGAATTCCTA 58.986 45.455 1.92 0.00 0.00 2.94
2869 5580 3.632145 GGTTGGCAATCGTGAATTCCTAT 59.368 43.478 1.92 0.00 0.00 2.57
2870 5581 4.097892 GGTTGGCAATCGTGAATTCCTATT 59.902 41.667 1.92 0.00 0.00 1.73
2871 5582 5.298276 GGTTGGCAATCGTGAATTCCTATTA 59.702 40.000 1.92 0.00 0.00 0.98
2872 5583 6.430451 GTTGGCAATCGTGAATTCCTATTAG 58.570 40.000 1.92 0.00 0.00 1.73
2873 5584 5.680619 TGGCAATCGTGAATTCCTATTAGT 58.319 37.500 2.27 0.00 0.00 2.24
2874 5585 5.527214 TGGCAATCGTGAATTCCTATTAGTG 59.473 40.000 2.27 0.00 0.00 2.74
2875 5586 5.444122 GCAATCGTGAATTCCTATTAGTGC 58.556 41.667 2.27 2.02 0.00 4.40
2876 5587 5.560953 GCAATCGTGAATTCCTATTAGTGCC 60.561 44.000 2.27 0.00 0.00 5.01
2877 5588 4.067972 TCGTGAATTCCTATTAGTGCCC 57.932 45.455 2.27 0.00 0.00 5.36
2878 5589 3.452990 TCGTGAATTCCTATTAGTGCCCA 59.547 43.478 2.27 0.00 0.00 5.36
2879 5590 4.102524 TCGTGAATTCCTATTAGTGCCCAT 59.897 41.667 2.27 0.00 0.00 4.00
2880 5591 5.305902 TCGTGAATTCCTATTAGTGCCCATA 59.694 40.000 2.27 0.00 0.00 2.74
2881 5592 5.408604 CGTGAATTCCTATTAGTGCCCATAC 59.591 44.000 2.27 0.00 0.00 2.39
2882 5593 5.705905 GTGAATTCCTATTAGTGCCCATACC 59.294 44.000 2.27 0.00 0.00 2.73
2883 5594 5.371176 TGAATTCCTATTAGTGCCCATACCA 59.629 40.000 2.27 0.00 0.00 3.25
2884 5595 6.045459 TGAATTCCTATTAGTGCCCATACCAT 59.955 38.462 2.27 0.00 0.00 3.55
2885 5596 7.238723 TGAATTCCTATTAGTGCCCATACCATA 59.761 37.037 2.27 0.00 0.00 2.74
2886 5597 7.582909 ATTCCTATTAGTGCCCATACCATAA 57.417 36.000 0.00 0.00 0.00 1.90
2887 5598 6.368779 TCCTATTAGTGCCCATACCATAAC 57.631 41.667 0.00 0.00 0.00 1.89
2888 5599 5.847265 TCCTATTAGTGCCCATACCATAACA 59.153 40.000 0.00 0.00 0.00 2.41
2889 5600 6.330514 TCCTATTAGTGCCCATACCATAACAA 59.669 38.462 0.00 0.00 0.00 2.83
2890 5601 7.018149 TCCTATTAGTGCCCATACCATAACAAT 59.982 37.037 0.00 0.00 0.00 2.71
2891 5602 6.899393 ATTAGTGCCCATACCATAACAATG 57.101 37.500 0.00 0.00 0.00 2.82
2892 5603 4.518278 AGTGCCCATACCATAACAATGA 57.482 40.909 0.00 0.00 0.00 2.57
2893 5604 4.464008 AGTGCCCATACCATAACAATGAG 58.536 43.478 0.00 0.00 0.00 2.90
2894 5605 4.165950 AGTGCCCATACCATAACAATGAGA 59.834 41.667 0.00 0.00 0.00 3.27
2895 5606 4.887071 GTGCCCATACCATAACAATGAGAA 59.113 41.667 0.00 0.00 0.00 2.87
2896 5607 4.887071 TGCCCATACCATAACAATGAGAAC 59.113 41.667 0.00 0.00 0.00 3.01
2897 5608 4.278419 GCCCATACCATAACAATGAGAACC 59.722 45.833 0.00 0.00 0.00 3.62
2898 5609 5.694995 CCCATACCATAACAATGAGAACCT 58.305 41.667 0.00 0.00 0.00 3.50
2899 5610 6.129179 CCCATACCATAACAATGAGAACCTT 58.871 40.000 0.00 0.00 0.00 3.50
2900 5611 7.287061 CCCATACCATAACAATGAGAACCTTA 58.713 38.462 0.00 0.00 0.00 2.69
2901 5612 7.777910 CCCATACCATAACAATGAGAACCTTAA 59.222 37.037 0.00 0.00 0.00 1.85
2902 5613 8.621286 CCATACCATAACAATGAGAACCTTAAC 58.379 37.037 0.00 0.00 0.00 2.01
2903 5614 9.396022 CATACCATAACAATGAGAACCTTAACT 57.604 33.333 0.00 0.00 0.00 2.24
2904 5615 7.687941 ACCATAACAATGAGAACCTTAACTG 57.312 36.000 0.00 0.00 0.00 3.16
2905 5616 7.231467 ACCATAACAATGAGAACCTTAACTGT 58.769 34.615 0.00 0.00 0.00 3.55
2906 5617 8.380099 ACCATAACAATGAGAACCTTAACTGTA 58.620 33.333 0.00 0.00 0.00 2.74
2907 5618 9.396022 CCATAACAATGAGAACCTTAACTGTAT 57.604 33.333 0.00 0.00 0.00 2.29
2911 5622 9.654663 AACAATGAGAACCTTAACTGTATACTC 57.345 33.333 4.17 0.00 0.00 2.59
2912 5623 8.258708 ACAATGAGAACCTTAACTGTATACTCC 58.741 37.037 4.17 0.00 0.00 3.85
2913 5624 6.786967 TGAGAACCTTAACTGTATACTCCC 57.213 41.667 4.17 0.00 0.00 4.30
2914 5625 5.659971 TGAGAACCTTAACTGTATACTCCCC 59.340 44.000 4.17 0.00 0.00 4.81
2915 5626 5.851418 AGAACCTTAACTGTATACTCCCCT 58.149 41.667 4.17 0.00 0.00 4.79
2916 5627 6.989894 AGAACCTTAACTGTATACTCCCCTA 58.010 40.000 4.17 0.00 0.00 3.53
2917 5628 7.068061 AGAACCTTAACTGTATACTCCCCTAG 58.932 42.308 4.17 0.00 0.00 3.02
2918 5629 6.603110 ACCTTAACTGTATACTCCCCTAGA 57.397 41.667 4.17 0.00 0.00 2.43
2919 5630 6.989894 ACCTTAACTGTATACTCCCCTAGAA 58.010 40.000 4.17 0.00 0.00 2.10
2920 5631 7.602868 ACCTTAACTGTATACTCCCCTAGAAT 58.397 38.462 4.17 0.00 0.00 2.40
2921 5632 8.740512 ACCTTAACTGTATACTCCCCTAGAATA 58.259 37.037 4.17 0.00 0.00 1.75
2922 5633 9.597681 CCTTAACTGTATACTCCCCTAGAATAA 57.402 37.037 4.17 0.00 0.00 1.40
2926 5637 9.503369 AACTGTATACTCCCCTAGAATAACTTT 57.497 33.333 4.17 0.00 0.00 2.66
2927 5638 9.145442 ACTGTATACTCCCCTAGAATAACTTTC 57.855 37.037 4.17 0.00 0.00 2.62
2928 5639 9.369672 CTGTATACTCCCCTAGAATAACTTTCT 57.630 37.037 4.17 0.00 0.00 2.52
2929 5640 9.364653 TGTATACTCCCCTAGAATAACTTTCTC 57.635 37.037 4.17 0.00 0.00 2.87
2930 5641 7.859026 ATACTCCCCTAGAATAACTTTCTCC 57.141 40.000 0.00 0.00 0.00 3.71
2931 5642 4.650131 ACTCCCCTAGAATAACTTTCTCCG 59.350 45.833 0.00 0.00 0.00 4.63
2932 5643 3.965347 TCCCCTAGAATAACTTTCTCCGG 59.035 47.826 0.00 0.00 0.00 5.14
2933 5644 3.710165 CCCCTAGAATAACTTTCTCCGGT 59.290 47.826 0.00 0.00 0.00 5.28
2934 5645 4.163649 CCCCTAGAATAACTTTCTCCGGTT 59.836 45.833 0.00 0.00 0.00 4.44
2935 5646 5.116882 CCCTAGAATAACTTTCTCCGGTTG 58.883 45.833 0.00 0.00 0.00 3.77
2936 5647 5.338137 CCCTAGAATAACTTTCTCCGGTTGT 60.338 44.000 0.00 0.00 0.00 3.32
2937 5648 6.171213 CCTAGAATAACTTTCTCCGGTTGTT 58.829 40.000 0.00 3.62 31.40 2.83
2938 5649 6.653740 CCTAGAATAACTTTCTCCGGTTGTTT 59.346 38.462 0.00 0.00 29.50 2.83
2939 5650 6.555812 AGAATAACTTTCTCCGGTTGTTTC 57.444 37.500 0.00 0.00 29.50 2.78
2940 5651 6.059484 AGAATAACTTTCTCCGGTTGTTTCA 58.941 36.000 0.00 0.00 29.50 2.69
2941 5652 6.544564 AGAATAACTTTCTCCGGTTGTTTCAA 59.455 34.615 0.00 0.00 29.50 2.69
2942 5653 6.894339 ATAACTTTCTCCGGTTGTTTCAAT 57.106 33.333 0.00 0.00 0.00 2.57
2943 5654 5.592104 AACTTTCTCCGGTTGTTTCAATT 57.408 34.783 0.00 0.00 0.00 2.32
2944 5655 5.183014 ACTTTCTCCGGTTGTTTCAATTC 57.817 39.130 0.00 0.00 0.00 2.17
2945 5656 4.642885 ACTTTCTCCGGTTGTTTCAATTCA 59.357 37.500 0.00 0.00 0.00 2.57
2946 5657 5.126384 ACTTTCTCCGGTTGTTTCAATTCAA 59.874 36.000 0.00 0.00 0.00 2.69
2947 5658 4.829064 TCTCCGGTTGTTTCAATTCAAG 57.171 40.909 0.00 0.00 0.00 3.02
2948 5659 4.456535 TCTCCGGTTGTTTCAATTCAAGA 58.543 39.130 0.00 0.00 0.00 3.02
2949 5660 4.515191 TCTCCGGTTGTTTCAATTCAAGAG 59.485 41.667 0.00 0.00 0.00 2.85
2950 5661 4.204012 TCCGGTTGTTTCAATTCAAGAGT 58.796 39.130 0.00 0.00 0.00 3.24
2951 5662 5.369833 TCCGGTTGTTTCAATTCAAGAGTA 58.630 37.500 0.00 0.00 0.00 2.59
2952 5663 6.001460 TCCGGTTGTTTCAATTCAAGAGTAT 58.999 36.000 0.00 0.00 0.00 2.12
2953 5664 7.162761 TCCGGTTGTTTCAATTCAAGAGTATA 58.837 34.615 0.00 0.00 0.00 1.47
2954 5665 7.333423 TCCGGTTGTTTCAATTCAAGAGTATAG 59.667 37.037 0.00 0.00 0.00 1.31
2955 5666 7.119262 CCGGTTGTTTCAATTCAAGAGTATAGT 59.881 37.037 0.00 0.00 0.00 2.12
2956 5667 8.504005 CGGTTGTTTCAATTCAAGAGTATAGTT 58.496 33.333 0.00 0.00 0.00 2.24
2957 5668 9.612620 GGTTGTTTCAATTCAAGAGTATAGTTG 57.387 33.333 0.00 0.00 0.00 3.16
2982 5693 9.996554 TGTTTCAATTCAAGAGTATAGTTCAGA 57.003 29.630 0.00 0.00 0.00 3.27
2984 5695 8.689251 TTCAATTCAAGAGTATAGTTCAGACG 57.311 34.615 0.00 0.00 0.00 4.18
2985 5696 7.258441 TCAATTCAAGAGTATAGTTCAGACGG 58.742 38.462 0.00 0.00 0.00 4.79
2986 5697 6.777213 ATTCAAGAGTATAGTTCAGACGGT 57.223 37.500 0.00 0.00 0.00 4.83
2987 5698 5.562506 TCAAGAGTATAGTTCAGACGGTG 57.437 43.478 0.00 0.00 0.00 4.94
2988 5699 5.008331 TCAAGAGTATAGTTCAGACGGTGT 58.992 41.667 0.00 0.00 0.00 4.16
2989 5700 5.475909 TCAAGAGTATAGTTCAGACGGTGTT 59.524 40.000 0.00 0.00 0.00 3.32
2990 5701 5.312120 AGAGTATAGTTCAGACGGTGTTG 57.688 43.478 0.00 0.00 0.00 3.33
2991 5702 5.008331 AGAGTATAGTTCAGACGGTGTTGA 58.992 41.667 0.00 0.00 0.00 3.18
2992 5703 5.124138 AGAGTATAGTTCAGACGGTGTTGAG 59.876 44.000 0.00 0.00 0.00 3.02
2993 5704 2.433868 TAGTTCAGACGGTGTTGAGC 57.566 50.000 0.00 0.00 0.00 4.26
2994 5705 0.249911 AGTTCAGACGGTGTTGAGCC 60.250 55.000 0.00 0.00 0.00 4.70
3001 5712 3.890674 GGTGTTGAGCCGATGGTC 58.109 61.111 0.00 0.00 39.48 4.02
3002 5713 1.296715 GGTGTTGAGCCGATGGTCT 59.703 57.895 0.00 0.00 39.75 3.85
3003 5714 0.741221 GGTGTTGAGCCGATGGTCTC 60.741 60.000 0.00 1.81 39.75 3.36
3031 5742 3.751246 CGTCTGTTCGGGGCGGTA 61.751 66.667 0.00 0.00 0.00 4.02
3064 5823 1.971167 GGTTGATTGGGCGCAGACA 60.971 57.895 10.83 1.33 37.00 3.41
3065 5824 1.523154 GGTTGATTGGGCGCAGACAA 61.523 55.000 10.83 11.95 37.00 3.18
3066 5825 0.527565 GTTGATTGGGCGCAGACAAT 59.472 50.000 19.61 19.61 37.00 2.71
3067 5826 1.742831 GTTGATTGGGCGCAGACAATA 59.257 47.619 19.56 7.01 37.00 1.90
3068 5827 1.378531 TGATTGGGCGCAGACAATAC 58.621 50.000 19.56 14.59 37.00 1.89
3071 5830 0.613260 TTGGGCGCAGACAATACTCT 59.387 50.000 10.83 0.00 37.00 3.24
3134 5907 3.907260 CTGCACGCCATGGACACCT 62.907 63.158 18.40 0.00 0.00 4.00
3160 5933 1.126846 GCTATCTCACGTGTGTTGTGC 59.873 52.381 16.51 12.58 37.26 4.57
3175 5948 4.039092 TGCTGCTTGCCTCCCTCC 62.039 66.667 0.00 0.00 42.00 4.30
3176 5949 4.039092 GCTGCTTGCCTCCCTCCA 62.039 66.667 0.00 0.00 35.15 3.86
3177 5950 2.045536 CTGCTTGCCTCCCTCCAC 60.046 66.667 0.00 0.00 0.00 4.02
3178 5951 3.635268 CTGCTTGCCTCCCTCCACC 62.635 68.421 0.00 0.00 0.00 4.61
3179 5952 3.334054 GCTTGCCTCCCTCCACCT 61.334 66.667 0.00 0.00 0.00 4.00
3180 5953 2.673523 CTTGCCTCCCTCCACCTG 59.326 66.667 0.00 0.00 0.00 4.00
3181 5954 1.920325 CTTGCCTCCCTCCACCTGA 60.920 63.158 0.00 0.00 0.00 3.86
3182 5955 1.229951 TTGCCTCCCTCCACCTGAT 60.230 57.895 0.00 0.00 0.00 2.90
3183 5956 1.565390 TTGCCTCCCTCCACCTGATG 61.565 60.000 0.00 0.00 0.00 3.07
3184 5957 2.914289 CCTCCCTCCACCTGATGC 59.086 66.667 0.00 0.00 0.00 3.91
3185 5958 2.750657 CCTCCCTCCACCTGATGCC 61.751 68.421 0.00 0.00 0.00 4.40
3186 5959 3.083349 TCCCTCCACCTGATGCCG 61.083 66.667 0.00 0.00 0.00 5.69
3187 5960 3.083349 CCCTCCACCTGATGCCGA 61.083 66.667 0.00 0.00 0.00 5.54
3188 5961 2.446848 CCCTCCACCTGATGCCGAT 61.447 63.158 0.00 0.00 0.00 4.18
3189 5962 1.121407 CCCTCCACCTGATGCCGATA 61.121 60.000 0.00 0.00 0.00 2.92
3190 5963 0.758734 CCTCCACCTGATGCCGATAA 59.241 55.000 0.00 0.00 0.00 1.75
3191 5964 1.140852 CCTCCACCTGATGCCGATAAA 59.859 52.381 0.00 0.00 0.00 1.40
3201 5974 1.286501 TGCCGATAAACATCTGACGC 58.713 50.000 0.00 0.00 0.00 5.19
3212 5985 3.508840 CTGACGCCAATTCCCGCC 61.509 66.667 0.00 0.00 0.00 6.13
3247 6020 9.234384 GCAATTGCTCATGAATATATGCTTATC 57.766 33.333 23.21 0.00 38.21 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 12 4.320494 CCACCAGCATAGACAAAAACTGAC 60.320 45.833 0.00 0.00 0.00 3.51
1056 2620 1.160137 CTGGAGCAGGAGAAAAACCG 58.840 55.000 0.00 0.00 0.00 4.44
1116 2680 7.645058 ACCATAATCGTTGAAGAATGGAATT 57.355 32.000 6.18 0.00 40.93 2.17
1721 4417 3.181445 ACATGTTTCAGTGAAGCCTACCA 60.181 43.478 16.05 0.00 0.00 3.25
1783 4479 0.892358 CTTGCAGCCTGGCTCTTGAA 60.892 55.000 20.49 8.02 36.40 2.69
1911 4612 2.449464 TCAGAAGGACATGCCCATTTG 58.551 47.619 0.00 0.00 37.37 2.32
1912 4613 2.905415 TCAGAAGGACATGCCCATTT 57.095 45.000 0.00 0.00 37.37 2.32
1921 4622 3.265221 AGATCCAAGCATTCAGAAGGACA 59.735 43.478 0.00 0.00 0.00 4.02
1959 4660 0.885596 CCAGGCGTTCAACGGGTTTA 60.886 55.000 12.81 0.00 42.82 2.01
1965 4666 3.177600 CCATCCAGGCGTTCAACG 58.822 61.111 5.28 5.28 45.88 4.10
2092 4796 5.058149 TCGAGCGGTATTACAGTAAACAA 57.942 39.130 0.00 0.00 0.00 2.83
2101 4805 5.066893 TGGGTATATCATCGAGCGGTATTAC 59.933 44.000 0.00 0.00 0.00 1.89
2102 4806 5.195185 TGGGTATATCATCGAGCGGTATTA 58.805 41.667 0.00 0.00 0.00 0.98
2180 4887 1.770658 TCACCATCCTGGGCTGATAAG 59.229 52.381 0.00 0.00 43.37 1.73
2314 5024 4.685924 ACTTGAACAAGAAAACCAGCATG 58.314 39.130 19.35 0.00 40.79 4.06
2351 5061 0.811281 GAGGGTGCCTTGCATAACAC 59.189 55.000 5.24 5.24 41.91 3.32
2405 5115 6.070538 GGATATACTCCACAGAGGCATTACAT 60.071 42.308 0.00 0.00 45.11 2.29
2431 5141 6.019801 GCTCGAGAAAAGAATTAGCGAATACA 60.020 38.462 18.75 0.00 0.00 2.29
2479 5190 3.616821 CGCTAACAGGAATTCACGATTGA 59.383 43.478 7.93 0.00 0.00 2.57
2505 5216 7.548075 CAGTTAAGGTTCTCATTGTTACGGTAT 59.452 37.037 0.00 0.00 0.00 2.73
2542 5253 7.218614 TGAAACAACCGGAGAAAGTTATTCTA 58.781 34.615 9.46 0.00 0.00 2.10
2583 5294 9.996554 TCTGAACTATACTCTTGAATTGAAACA 57.003 29.630 0.00 0.00 0.00 2.83
2585 5296 9.140286 CGTCTGAACTATACTCTTGAATTGAAA 57.860 33.333 0.00 0.00 0.00 2.69
2586 5297 7.759886 CCGTCTGAACTATACTCTTGAATTGAA 59.240 37.037 0.00 0.00 0.00 2.69
2587 5298 7.093902 ACCGTCTGAACTATACTCTTGAATTGA 60.094 37.037 0.00 0.00 0.00 2.57
2588 5299 7.009631 CACCGTCTGAACTATACTCTTGAATTG 59.990 40.741 0.00 0.00 0.00 2.32
2589 5300 7.036220 CACCGTCTGAACTATACTCTTGAATT 58.964 38.462 0.00 0.00 0.00 2.17
2590 5301 6.153000 ACACCGTCTGAACTATACTCTTGAAT 59.847 38.462 0.00 0.00 0.00 2.57
2631 5342 2.592194 TCTCGAATACGACAAGCACAC 58.408 47.619 0.00 0.00 43.81 3.82
2632 5343 3.291809 TTCTCGAATACGACAAGCACA 57.708 42.857 0.00 0.00 43.81 4.57
2633 5344 4.259850 GGAATTCTCGAATACGACAAGCAC 60.260 45.833 5.23 0.00 43.81 4.40
2634 5345 3.863424 GGAATTCTCGAATACGACAAGCA 59.137 43.478 5.23 0.00 43.81 3.91
2635 5346 4.026475 CAGGAATTCTCGAATACGACAAGC 60.026 45.833 5.23 0.00 43.81 4.01
2636 5347 5.103000 ACAGGAATTCTCGAATACGACAAG 58.897 41.667 5.23 0.00 43.81 3.16
2637 5348 5.068234 ACAGGAATTCTCGAATACGACAA 57.932 39.130 5.23 0.00 43.81 3.18
2638 5349 4.713824 ACAGGAATTCTCGAATACGACA 57.286 40.909 5.23 0.00 43.81 4.35
2639 5350 5.173492 GCTAACAGGAATTCTCGAATACGAC 59.827 44.000 5.23 0.00 43.81 4.34
2640 5351 5.279384 GCTAACAGGAATTCTCGAATACGA 58.721 41.667 5.23 0.00 46.56 3.43
2641 5352 4.146616 CGCTAACAGGAATTCTCGAATACG 59.853 45.833 5.23 0.00 41.26 3.06
2642 5353 4.085004 GCGCTAACAGGAATTCTCGAATAC 60.085 45.833 0.00 0.00 0.00 1.89
2643 5354 4.049186 GCGCTAACAGGAATTCTCGAATA 58.951 43.478 0.00 0.00 0.00 1.75
2644 5355 2.866762 GCGCTAACAGGAATTCTCGAAT 59.133 45.455 0.00 0.00 0.00 3.34
2645 5356 2.268298 GCGCTAACAGGAATTCTCGAA 58.732 47.619 0.00 0.00 0.00 3.71
2646 5357 1.470979 GGCGCTAACAGGAATTCTCGA 60.471 52.381 7.64 0.00 0.00 4.04
2647 5358 0.931005 GGCGCTAACAGGAATTCTCG 59.069 55.000 7.64 0.00 0.00 4.04
2648 5359 1.300481 GGGCGCTAACAGGAATTCTC 58.700 55.000 7.64 0.00 0.00 2.87
2649 5360 0.618458 TGGGCGCTAACAGGAATTCT 59.382 50.000 7.64 0.00 0.00 2.40
2650 5361 1.680338 ATGGGCGCTAACAGGAATTC 58.320 50.000 7.64 0.00 0.00 2.17
2651 5362 2.572290 GTATGGGCGCTAACAGGAATT 58.428 47.619 7.64 0.00 0.00 2.17
2652 5363 1.202770 GGTATGGGCGCTAACAGGAAT 60.203 52.381 7.64 0.00 0.00 3.01
2653 5364 0.179468 GGTATGGGCGCTAACAGGAA 59.821 55.000 7.64 0.00 0.00 3.36
2654 5365 0.978667 TGGTATGGGCGCTAACAGGA 60.979 55.000 7.64 0.00 0.00 3.86
2655 5366 0.108585 ATGGTATGGGCGCTAACAGG 59.891 55.000 7.64 0.00 0.00 4.00
2656 5367 2.806244 GTTATGGTATGGGCGCTAACAG 59.194 50.000 7.64 0.00 0.00 3.16
2657 5368 2.170817 TGTTATGGTATGGGCGCTAACA 59.829 45.455 7.64 8.93 0.00 2.41
2658 5369 2.841215 TGTTATGGTATGGGCGCTAAC 58.159 47.619 7.64 6.16 0.00 2.34
2659 5370 3.562343 TTGTTATGGTATGGGCGCTAA 57.438 42.857 7.64 0.00 0.00 3.09
2660 5371 3.071747 TCATTGTTATGGTATGGGCGCTA 59.928 43.478 7.64 0.00 32.40 4.26
2661 5372 2.158682 TCATTGTTATGGTATGGGCGCT 60.159 45.455 7.64 0.00 32.40 5.92
2662 5373 2.226330 TCATTGTTATGGTATGGGCGC 58.774 47.619 0.00 0.00 32.40 6.53
2663 5374 3.738982 TCTCATTGTTATGGTATGGGCG 58.261 45.455 0.00 0.00 32.40 6.13
2664 5375 4.278419 GGTTCTCATTGTTATGGTATGGGC 59.722 45.833 0.00 0.00 32.40 5.36
2665 5376 5.694995 AGGTTCTCATTGTTATGGTATGGG 58.305 41.667 0.00 0.00 32.40 4.00
2666 5377 8.621286 GTTAAGGTTCTCATTGTTATGGTATGG 58.379 37.037 0.00 0.00 32.40 2.74
2667 5378 9.396022 AGTTAAGGTTCTCATTGTTATGGTATG 57.604 33.333 0.00 0.00 32.40 2.39
2668 5379 9.396022 CAGTTAAGGTTCTCATTGTTATGGTAT 57.604 33.333 0.00 0.00 32.40 2.73
2669 5380 8.380099 ACAGTTAAGGTTCTCATTGTTATGGTA 58.620 33.333 0.00 0.00 32.40 3.25
2670 5381 7.231467 ACAGTTAAGGTTCTCATTGTTATGGT 58.769 34.615 0.00 0.00 32.40 3.55
2671 5382 7.687941 ACAGTTAAGGTTCTCATTGTTATGG 57.312 36.000 0.00 0.00 32.40 2.74
2675 5386 9.654663 GAGTATACAGTTAAGGTTCTCATTGTT 57.345 33.333 5.50 0.00 0.00 2.83
2676 5387 8.258708 GGAGTATACAGTTAAGGTTCTCATTGT 58.741 37.037 5.50 0.00 0.00 2.71
2677 5388 7.711339 GGGAGTATACAGTTAAGGTTCTCATTG 59.289 40.741 5.50 0.00 0.00 2.82
2678 5389 7.147532 GGGGAGTATACAGTTAAGGTTCTCATT 60.148 40.741 5.50 0.00 0.00 2.57
2679 5390 6.326843 GGGGAGTATACAGTTAAGGTTCTCAT 59.673 42.308 5.50 0.00 0.00 2.90
2680 5391 5.659971 GGGGAGTATACAGTTAAGGTTCTCA 59.340 44.000 5.50 0.00 0.00 3.27
2681 5392 5.898397 AGGGGAGTATACAGTTAAGGTTCTC 59.102 44.000 5.50 0.00 0.00 2.87
2682 5393 5.851418 AGGGGAGTATACAGTTAAGGTTCT 58.149 41.667 5.50 0.00 0.00 3.01
2683 5394 7.065504 TCTAGGGGAGTATACAGTTAAGGTTC 58.934 42.308 5.50 0.00 0.00 3.62
2684 5395 6.989894 TCTAGGGGAGTATACAGTTAAGGTT 58.010 40.000 5.50 0.00 0.00 3.50
2685 5396 6.603110 TCTAGGGGAGTATACAGTTAAGGT 57.397 41.667 5.50 0.00 0.00 3.50
2686 5397 9.597681 TTATTCTAGGGGAGTATACAGTTAAGG 57.402 37.037 5.50 0.00 0.00 2.69
2690 5401 9.503369 AAAGTTATTCTAGGGGAGTATACAGTT 57.497 33.333 5.50 0.00 0.00 3.16
2691 5402 9.145442 GAAAGTTATTCTAGGGGAGTATACAGT 57.855 37.037 5.50 0.00 0.00 3.55
2692 5403 9.369672 AGAAAGTTATTCTAGGGGAGTATACAG 57.630 37.037 5.50 0.00 0.00 2.74
2693 5404 9.364653 GAGAAAGTTATTCTAGGGGAGTATACA 57.635 37.037 5.50 0.00 0.00 2.29
2694 5405 8.805175 GGAGAAAGTTATTCTAGGGGAGTATAC 58.195 40.741 0.00 0.00 0.00 1.47
2695 5406 7.668886 CGGAGAAAGTTATTCTAGGGGAGTATA 59.331 40.741 0.00 0.00 0.00 1.47
2696 5407 6.494146 CGGAGAAAGTTATTCTAGGGGAGTAT 59.506 42.308 0.00 0.00 0.00 2.12
2697 5408 5.832060 CGGAGAAAGTTATTCTAGGGGAGTA 59.168 44.000 0.00 0.00 0.00 2.59
2698 5409 4.650131 CGGAGAAAGTTATTCTAGGGGAGT 59.350 45.833 0.00 0.00 0.00 3.85
2699 5410 4.039366 CCGGAGAAAGTTATTCTAGGGGAG 59.961 50.000 0.00 0.00 0.00 4.30
2700 5411 3.965347 CCGGAGAAAGTTATTCTAGGGGA 59.035 47.826 0.00 0.00 0.00 4.81
2701 5412 3.710165 ACCGGAGAAAGTTATTCTAGGGG 59.290 47.826 9.46 7.94 33.45 4.79
2702 5413 5.116882 CAACCGGAGAAAGTTATTCTAGGG 58.883 45.833 9.46 9.74 33.45 3.53
2703 5414 5.731591 ACAACCGGAGAAAGTTATTCTAGG 58.268 41.667 9.46 9.34 34.57 3.02
2704 5415 7.386848 TGAAACAACCGGAGAAAGTTATTCTAG 59.613 37.037 9.46 0.00 0.00 2.43
2705 5416 7.218614 TGAAACAACCGGAGAAAGTTATTCTA 58.781 34.615 9.46 0.00 0.00 2.10
2706 5417 6.059484 TGAAACAACCGGAGAAAGTTATTCT 58.941 36.000 9.46 0.00 0.00 2.40
2707 5418 6.308371 TGAAACAACCGGAGAAAGTTATTC 57.692 37.500 9.46 0.00 0.00 1.75
2708 5419 6.702716 TTGAAACAACCGGAGAAAGTTATT 57.297 33.333 9.46 0.00 0.00 1.40
2709 5420 6.894339 ATTGAAACAACCGGAGAAAGTTAT 57.106 33.333 9.46 0.00 0.00 1.89
2710 5421 6.319152 TGAATTGAAACAACCGGAGAAAGTTA 59.681 34.615 9.46 0.00 0.00 2.24
2711 5422 5.126384 TGAATTGAAACAACCGGAGAAAGTT 59.874 36.000 9.46 1.92 0.00 2.66
2712 5423 4.642885 TGAATTGAAACAACCGGAGAAAGT 59.357 37.500 9.46 0.00 0.00 2.66
2713 5424 5.181690 TGAATTGAAACAACCGGAGAAAG 57.818 39.130 9.46 0.00 0.00 2.62
2714 5425 5.358442 TCTTGAATTGAAACAACCGGAGAAA 59.642 36.000 9.46 0.00 0.00 2.52
2715 5426 4.884744 TCTTGAATTGAAACAACCGGAGAA 59.115 37.500 9.46 0.00 0.00 2.87
2716 5427 4.456535 TCTTGAATTGAAACAACCGGAGA 58.543 39.130 9.46 0.00 0.00 3.71
2717 5428 4.275936 ACTCTTGAATTGAAACAACCGGAG 59.724 41.667 9.46 1.96 0.00 4.63
2718 5429 4.204012 ACTCTTGAATTGAAACAACCGGA 58.796 39.130 9.46 0.00 0.00 5.14
2719 5430 4.568152 ACTCTTGAATTGAAACAACCGG 57.432 40.909 0.00 0.00 0.00 5.28
2720 5431 8.029642 ACTATACTCTTGAATTGAAACAACCG 57.970 34.615 0.00 0.00 0.00 4.44
2721 5432 9.612620 CAACTATACTCTTGAATTGAAACAACC 57.387 33.333 0.00 0.00 0.00 3.77
2746 5457 9.996554 TCTGAACTATACTCTTGAATTGAAACA 57.003 29.630 0.00 0.00 0.00 2.83
2748 5459 9.140286 CGTCTGAACTATACTCTTGAATTGAAA 57.860 33.333 0.00 0.00 0.00 2.69
2749 5460 7.759886 CCGTCTGAACTATACTCTTGAATTGAA 59.240 37.037 0.00 0.00 0.00 2.69
2750 5461 7.093902 ACCGTCTGAACTATACTCTTGAATTGA 60.094 37.037 0.00 0.00 0.00 2.57
2751 5462 7.009631 CACCGTCTGAACTATACTCTTGAATTG 59.990 40.741 0.00 0.00 0.00 2.32
2752 5463 7.036220 CACCGTCTGAACTATACTCTTGAATT 58.964 38.462 0.00 0.00 0.00 2.17
2753 5464 6.153000 ACACCGTCTGAACTATACTCTTGAAT 59.847 38.462 0.00 0.00 0.00 2.57
2754 5465 5.475909 ACACCGTCTGAACTATACTCTTGAA 59.524 40.000 0.00 0.00 0.00 2.69
2755 5466 5.008331 ACACCGTCTGAACTATACTCTTGA 58.992 41.667 0.00 0.00 0.00 3.02
2756 5467 5.312120 ACACCGTCTGAACTATACTCTTG 57.688 43.478 0.00 0.00 0.00 3.02
2757 5468 5.475909 TCAACACCGTCTGAACTATACTCTT 59.524 40.000 0.00 0.00 0.00 2.85
2758 5469 5.008331 TCAACACCGTCTGAACTATACTCT 58.992 41.667 0.00 0.00 0.00 3.24
2759 5470 5.306532 TCAACACCGTCTGAACTATACTC 57.693 43.478 0.00 0.00 0.00 2.59
2760 5471 4.380655 GCTCAACACCGTCTGAACTATACT 60.381 45.833 0.00 0.00 0.00 2.12
2761 5472 3.858238 GCTCAACACCGTCTGAACTATAC 59.142 47.826 0.00 0.00 0.00 1.47
2762 5473 3.119245 GGCTCAACACCGTCTGAACTATA 60.119 47.826 0.00 0.00 0.00 1.31
2763 5474 2.353803 GGCTCAACACCGTCTGAACTAT 60.354 50.000 0.00 0.00 0.00 2.12
2764 5475 1.000506 GGCTCAACACCGTCTGAACTA 59.999 52.381 0.00 0.00 0.00 2.24
2765 5476 0.249911 GGCTCAACACCGTCTGAACT 60.250 55.000 0.00 0.00 0.00 3.01
2766 5477 1.557443 CGGCTCAACACCGTCTGAAC 61.557 60.000 0.00 0.00 45.70 3.18
2767 5478 1.300620 CGGCTCAACACCGTCTGAA 60.301 57.895 0.00 0.00 45.70 3.02
2768 5479 2.338620 CGGCTCAACACCGTCTGA 59.661 61.111 0.00 0.00 45.70 3.27
2774 5485 0.741221 GAGACCATCGGCTCAACACC 60.741 60.000 0.00 0.00 0.00 4.16
2775 5486 2.755929 GAGACCATCGGCTCAACAC 58.244 57.895 0.00 0.00 0.00 3.32
2785 5496 1.071605 GACAAGCACACGAGACCATC 58.928 55.000 0.00 0.00 0.00 3.51
2786 5497 0.667487 CGACAAGCACACGAGACCAT 60.667 55.000 0.00 0.00 0.00 3.55
2787 5498 1.299850 CGACAAGCACACGAGACCA 60.300 57.895 0.00 0.00 0.00 4.02
2788 5499 0.039798 TACGACAAGCACACGAGACC 60.040 55.000 0.00 0.00 0.00 3.85
2789 5500 1.978542 ATACGACAAGCACACGAGAC 58.021 50.000 0.00 0.00 0.00 3.36
2790 5501 2.592194 GAATACGACAAGCACACGAGA 58.408 47.619 0.00 0.00 0.00 4.04
2791 5502 1.317611 CGAATACGACAAGCACACGAG 59.682 52.381 0.00 0.00 42.66 4.18
2792 5503 1.333115 CGAATACGACAAGCACACGA 58.667 50.000 0.00 0.00 42.66 4.35
2793 5504 0.246757 GCGAATACGACAAGCACACG 60.247 55.000 0.00 0.00 42.66 4.49
2794 5505 1.068474 AGCGAATACGACAAGCACAC 58.932 50.000 0.00 0.00 42.66 3.82
2795 5506 2.640346 TAGCGAATACGACAAGCACA 57.360 45.000 0.00 0.00 42.66 4.57
2796 5507 4.267928 AGAATTAGCGAATACGACAAGCAC 59.732 41.667 0.00 0.00 42.66 4.40
2797 5508 4.430007 AGAATTAGCGAATACGACAAGCA 58.570 39.130 0.00 0.00 42.66 3.91
2798 5509 5.391060 AAGAATTAGCGAATACGACAAGC 57.609 39.130 0.00 0.00 42.66 4.01
2799 5510 7.676393 AGAAAAGAATTAGCGAATACGACAAG 58.324 34.615 0.00 0.00 42.66 3.16
2800 5511 7.462331 CGAGAAAAGAATTAGCGAATACGACAA 60.462 37.037 0.00 0.00 42.66 3.18
2801 5512 6.020916 CGAGAAAAGAATTAGCGAATACGACA 60.021 38.462 0.00 0.00 42.66 4.35
2802 5513 6.195983 TCGAGAAAAGAATTAGCGAATACGAC 59.804 38.462 0.00 0.00 42.66 4.34
2803 5514 6.260377 TCGAGAAAAGAATTAGCGAATACGA 58.740 36.000 0.00 0.00 42.66 3.43
2804 5515 6.492286 TCGAGAAAAGAATTAGCGAATACG 57.508 37.500 0.00 0.00 42.93 3.06
2805 5516 6.019801 TGCTCGAGAAAAGAATTAGCGAATAC 60.020 38.462 18.75 0.00 0.00 1.89
2806 5517 6.040247 TGCTCGAGAAAAGAATTAGCGAATA 58.960 36.000 18.75 0.00 0.00 1.75
2807 5518 4.870426 TGCTCGAGAAAAGAATTAGCGAAT 59.130 37.500 18.75 0.00 0.00 3.34
2808 5519 4.242475 TGCTCGAGAAAAGAATTAGCGAA 58.758 39.130 18.75 0.00 0.00 4.70
2809 5520 3.845178 TGCTCGAGAAAAGAATTAGCGA 58.155 40.909 18.75 0.00 0.00 4.93
2810 5521 4.785669 ATGCTCGAGAAAAGAATTAGCG 57.214 40.909 18.75 0.00 0.00 4.26
2811 5522 5.873732 ACAATGCTCGAGAAAAGAATTAGC 58.126 37.500 18.75 0.00 0.00 3.09
2812 5523 7.746929 AGAACAATGCTCGAGAAAAGAATTAG 58.253 34.615 18.75 3.83 0.00 1.73
2813 5524 7.604164 AGAGAACAATGCTCGAGAAAAGAATTA 59.396 33.333 18.75 0.00 37.46 1.40
2814 5525 6.429385 AGAGAACAATGCTCGAGAAAAGAATT 59.571 34.615 18.75 0.35 37.46 2.17
2815 5526 5.936956 AGAGAACAATGCTCGAGAAAAGAAT 59.063 36.000 18.75 0.00 37.46 2.40
2816 5527 5.300752 AGAGAACAATGCTCGAGAAAAGAA 58.699 37.500 18.75 0.00 37.46 2.52
2817 5528 4.887748 AGAGAACAATGCTCGAGAAAAGA 58.112 39.130 18.75 0.00 37.46 2.52
2818 5529 5.604010 AAGAGAACAATGCTCGAGAAAAG 57.396 39.130 18.75 5.16 37.46 2.27
2819 5530 7.148407 GGATTAAGAGAACAATGCTCGAGAAAA 60.148 37.037 18.75 0.24 37.46 2.29
2820 5531 6.313905 GGATTAAGAGAACAATGCTCGAGAAA 59.686 38.462 18.75 3.24 37.46 2.52
2821 5532 5.812642 GGATTAAGAGAACAATGCTCGAGAA 59.187 40.000 18.75 5.90 37.46 2.87
2822 5533 5.352284 GGATTAAGAGAACAATGCTCGAGA 58.648 41.667 18.75 1.31 37.46 4.04
2823 5534 4.509600 GGGATTAAGAGAACAATGCTCGAG 59.490 45.833 8.45 8.45 37.46 4.04
2824 5535 4.442706 GGGATTAAGAGAACAATGCTCGA 58.557 43.478 0.00 0.00 37.46 4.04
2825 5536 3.246226 CGGGATTAAGAGAACAATGCTCG 59.754 47.826 0.00 0.00 37.46 5.03
2826 5537 3.561725 CCGGGATTAAGAGAACAATGCTC 59.438 47.826 0.00 0.00 0.00 4.26
2827 5538 3.054361 ACCGGGATTAAGAGAACAATGCT 60.054 43.478 6.32 0.00 0.00 3.79
2828 5539 3.279434 ACCGGGATTAAGAGAACAATGC 58.721 45.455 6.32 0.00 0.00 3.56
2829 5540 4.096382 CCAACCGGGATTAAGAGAACAATG 59.904 45.833 6.32 0.00 40.01 2.82
2830 5541 4.270008 CCAACCGGGATTAAGAGAACAAT 58.730 43.478 6.32 0.00 40.01 2.71
2831 5542 3.681593 CCAACCGGGATTAAGAGAACAA 58.318 45.455 6.32 0.00 40.01 2.83
2832 5543 2.617021 GCCAACCGGGATTAAGAGAACA 60.617 50.000 6.32 0.00 40.01 3.18
2833 5544 2.014857 GCCAACCGGGATTAAGAGAAC 58.985 52.381 6.32 0.00 40.01 3.01
2834 5545 1.631388 TGCCAACCGGGATTAAGAGAA 59.369 47.619 6.32 0.00 40.01 2.87
2835 5546 1.281419 TGCCAACCGGGATTAAGAGA 58.719 50.000 6.32 0.00 40.01 3.10
2836 5547 2.122783 TTGCCAACCGGGATTAAGAG 57.877 50.000 6.32 0.00 40.01 2.85
2837 5548 2.650322 GATTGCCAACCGGGATTAAGA 58.350 47.619 6.32 0.00 40.01 2.10
2838 5549 1.333619 CGATTGCCAACCGGGATTAAG 59.666 52.381 6.32 0.00 40.01 1.85
2839 5550 1.340211 ACGATTGCCAACCGGGATTAA 60.340 47.619 6.32 0.00 40.01 1.40
2840 5551 0.253610 ACGATTGCCAACCGGGATTA 59.746 50.000 6.32 0.00 40.01 1.75
2841 5552 1.001393 ACGATTGCCAACCGGGATT 60.001 52.632 6.32 0.00 40.01 3.01
2842 5553 1.748879 CACGATTGCCAACCGGGAT 60.749 57.895 6.32 0.00 40.01 3.85
2843 5554 2.359354 CACGATTGCCAACCGGGA 60.359 61.111 6.32 0.00 40.01 5.14
2844 5555 1.312371 ATTCACGATTGCCAACCGGG 61.312 55.000 6.32 0.00 40.85 5.73
2845 5556 0.525761 AATTCACGATTGCCAACCGG 59.474 50.000 0.00 0.00 0.00 5.28
2846 5557 1.467374 GGAATTCACGATTGCCAACCG 60.467 52.381 7.93 0.00 30.50 4.44
2847 5558 1.818674 AGGAATTCACGATTGCCAACC 59.181 47.619 7.93 0.00 36.81 3.77
2848 5559 4.900635 ATAGGAATTCACGATTGCCAAC 57.099 40.909 7.93 0.00 36.81 3.77
2849 5560 6.038161 CACTAATAGGAATTCACGATTGCCAA 59.962 38.462 7.93 0.00 36.81 4.52
2850 5561 5.527214 CACTAATAGGAATTCACGATTGCCA 59.473 40.000 7.93 0.00 36.81 4.92
2851 5562 5.560953 GCACTAATAGGAATTCACGATTGCC 60.561 44.000 7.93 0.00 36.81 4.52
2852 5563 5.444122 GCACTAATAGGAATTCACGATTGC 58.556 41.667 7.93 3.22 36.42 3.56
2853 5564 5.049405 GGGCACTAATAGGAATTCACGATTG 60.049 44.000 7.93 0.00 0.00 2.67
2854 5565 5.063880 GGGCACTAATAGGAATTCACGATT 58.936 41.667 7.93 7.47 0.00 3.34
2855 5566 4.102524 TGGGCACTAATAGGAATTCACGAT 59.897 41.667 7.93 0.00 0.00 3.73
2856 5567 3.452990 TGGGCACTAATAGGAATTCACGA 59.547 43.478 7.93 0.00 0.00 4.35
2857 5568 3.804036 TGGGCACTAATAGGAATTCACG 58.196 45.455 7.93 0.00 0.00 4.35
2858 5569 5.705905 GGTATGGGCACTAATAGGAATTCAC 59.294 44.000 7.93 0.00 0.00 3.18
2859 5570 5.371176 TGGTATGGGCACTAATAGGAATTCA 59.629 40.000 7.93 0.00 0.00 2.57
2860 5571 5.876357 TGGTATGGGCACTAATAGGAATTC 58.124 41.667 0.00 0.00 0.00 2.17
2861 5572 5.922960 TGGTATGGGCACTAATAGGAATT 57.077 39.130 0.00 0.00 0.00 2.17
2862 5573 7.018149 TGTTATGGTATGGGCACTAATAGGAAT 59.982 37.037 0.00 0.00 0.00 3.01
2863 5574 6.330514 TGTTATGGTATGGGCACTAATAGGAA 59.669 38.462 0.00 0.00 0.00 3.36
2864 5575 5.847265 TGTTATGGTATGGGCACTAATAGGA 59.153 40.000 0.00 0.00 0.00 2.94
2865 5576 6.121776 TGTTATGGTATGGGCACTAATAGG 57.878 41.667 0.00 0.00 0.00 2.57
2866 5577 7.882791 TCATTGTTATGGTATGGGCACTAATAG 59.117 37.037 0.00 0.00 32.40 1.73
2867 5578 7.750655 TCATTGTTATGGTATGGGCACTAATA 58.249 34.615 0.00 0.00 32.40 0.98
2868 5579 6.609876 TCATTGTTATGGTATGGGCACTAAT 58.390 36.000 0.00 0.00 32.40 1.73
2869 5580 6.007485 TCATTGTTATGGTATGGGCACTAA 57.993 37.500 0.00 0.00 32.40 2.24
2870 5581 5.368230 TCTCATTGTTATGGTATGGGCACTA 59.632 40.000 0.00 0.00 32.40 2.74
2871 5582 4.165950 TCTCATTGTTATGGTATGGGCACT 59.834 41.667 0.00 0.00 32.40 4.40
2872 5583 4.460263 TCTCATTGTTATGGTATGGGCAC 58.540 43.478 0.00 0.00 32.40 5.01
2873 5584 4.787135 TCTCATTGTTATGGTATGGGCA 57.213 40.909 0.00 0.00 32.40 5.36
2874 5585 4.278419 GGTTCTCATTGTTATGGTATGGGC 59.722 45.833 0.00 0.00 32.40 5.36
2875 5586 5.694995 AGGTTCTCATTGTTATGGTATGGG 58.305 41.667 0.00 0.00 32.40 4.00
2876 5587 8.621286 GTTAAGGTTCTCATTGTTATGGTATGG 58.379 37.037 0.00 0.00 32.40 2.74
2877 5588 9.396022 AGTTAAGGTTCTCATTGTTATGGTATG 57.604 33.333 0.00 0.00 32.40 2.39
2878 5589 9.396022 CAGTTAAGGTTCTCATTGTTATGGTAT 57.604 33.333 0.00 0.00 32.40 2.73
2879 5590 8.380099 ACAGTTAAGGTTCTCATTGTTATGGTA 58.620 33.333 0.00 0.00 32.40 3.25
2880 5591 7.231467 ACAGTTAAGGTTCTCATTGTTATGGT 58.769 34.615 0.00 0.00 32.40 3.55
2881 5592 7.687941 ACAGTTAAGGTTCTCATTGTTATGG 57.312 36.000 0.00 0.00 32.40 2.74
2885 5596 9.654663 GAGTATACAGTTAAGGTTCTCATTGTT 57.345 33.333 5.50 0.00 0.00 2.83
2886 5597 8.258708 GGAGTATACAGTTAAGGTTCTCATTGT 58.741 37.037 5.50 0.00 0.00 2.71
2887 5598 7.711339 GGGAGTATACAGTTAAGGTTCTCATTG 59.289 40.741 5.50 0.00 0.00 2.82
2888 5599 7.147532 GGGGAGTATACAGTTAAGGTTCTCATT 60.148 40.741 5.50 0.00 0.00 2.57
2889 5600 6.326843 GGGGAGTATACAGTTAAGGTTCTCAT 59.673 42.308 5.50 0.00 0.00 2.90
2890 5601 5.659971 GGGGAGTATACAGTTAAGGTTCTCA 59.340 44.000 5.50 0.00 0.00 3.27
2891 5602 5.898397 AGGGGAGTATACAGTTAAGGTTCTC 59.102 44.000 5.50 0.00 0.00 2.87
2892 5603 5.851418 AGGGGAGTATACAGTTAAGGTTCT 58.149 41.667 5.50 0.00 0.00 3.01
2893 5604 7.065504 TCTAGGGGAGTATACAGTTAAGGTTC 58.934 42.308 5.50 0.00 0.00 3.62
2894 5605 6.989894 TCTAGGGGAGTATACAGTTAAGGTT 58.010 40.000 5.50 0.00 0.00 3.50
2895 5606 6.603110 TCTAGGGGAGTATACAGTTAAGGT 57.397 41.667 5.50 0.00 0.00 3.50
2896 5607 9.597681 TTATTCTAGGGGAGTATACAGTTAAGG 57.402 37.037 5.50 0.00 0.00 2.69
2900 5611 9.503369 AAAGTTATTCTAGGGGAGTATACAGTT 57.497 33.333 5.50 0.00 0.00 3.16
2901 5612 9.145442 GAAAGTTATTCTAGGGGAGTATACAGT 57.855 37.037 5.50 0.00 0.00 3.55
2902 5613 9.369672 AGAAAGTTATTCTAGGGGAGTATACAG 57.630 37.037 5.50 0.00 0.00 2.74
2903 5614 9.364653 GAGAAAGTTATTCTAGGGGAGTATACA 57.635 37.037 5.50 0.00 0.00 2.29
2904 5615 8.805175 GGAGAAAGTTATTCTAGGGGAGTATAC 58.195 40.741 0.00 0.00 0.00 1.47
2905 5616 7.668886 CGGAGAAAGTTATTCTAGGGGAGTATA 59.331 40.741 0.00 0.00 0.00 1.47
2906 5617 6.494146 CGGAGAAAGTTATTCTAGGGGAGTAT 59.506 42.308 0.00 0.00 0.00 2.12
2907 5618 5.832060 CGGAGAAAGTTATTCTAGGGGAGTA 59.168 44.000 0.00 0.00 0.00 2.59
2908 5619 4.650131 CGGAGAAAGTTATTCTAGGGGAGT 59.350 45.833 0.00 0.00 0.00 3.85
2909 5620 4.039366 CCGGAGAAAGTTATTCTAGGGGAG 59.961 50.000 0.00 0.00 0.00 4.30
2910 5621 3.965347 CCGGAGAAAGTTATTCTAGGGGA 59.035 47.826 0.00 0.00 0.00 4.81
2911 5622 3.710165 ACCGGAGAAAGTTATTCTAGGGG 59.290 47.826 9.46 7.94 33.45 4.79
2912 5623 5.116882 CAACCGGAGAAAGTTATTCTAGGG 58.883 45.833 9.46 9.74 33.45 3.53
2913 5624 5.731591 ACAACCGGAGAAAGTTATTCTAGG 58.268 41.667 9.46 9.34 34.57 3.02
2914 5625 7.386848 TGAAACAACCGGAGAAAGTTATTCTAG 59.613 37.037 9.46 0.00 0.00 2.43
2915 5626 7.218614 TGAAACAACCGGAGAAAGTTATTCTA 58.781 34.615 9.46 0.00 0.00 2.10
2916 5627 6.059484 TGAAACAACCGGAGAAAGTTATTCT 58.941 36.000 9.46 0.00 0.00 2.40
2917 5628 6.308371 TGAAACAACCGGAGAAAGTTATTC 57.692 37.500 9.46 0.00 0.00 1.75
2918 5629 6.702716 TTGAAACAACCGGAGAAAGTTATT 57.297 33.333 9.46 0.00 0.00 1.40
2919 5630 6.894339 ATTGAAACAACCGGAGAAAGTTAT 57.106 33.333 9.46 0.00 0.00 1.89
2920 5631 6.319152 TGAATTGAAACAACCGGAGAAAGTTA 59.681 34.615 9.46 0.00 0.00 2.24
2921 5632 5.126384 TGAATTGAAACAACCGGAGAAAGTT 59.874 36.000 9.46 1.92 0.00 2.66
2922 5633 4.642885 TGAATTGAAACAACCGGAGAAAGT 59.357 37.500 9.46 0.00 0.00 2.66
2923 5634 5.181690 TGAATTGAAACAACCGGAGAAAG 57.818 39.130 9.46 0.00 0.00 2.62
2924 5635 5.358442 TCTTGAATTGAAACAACCGGAGAAA 59.642 36.000 9.46 0.00 0.00 2.52
2925 5636 4.884744 TCTTGAATTGAAACAACCGGAGAA 59.115 37.500 9.46 0.00 0.00 2.87
2926 5637 4.456535 TCTTGAATTGAAACAACCGGAGA 58.543 39.130 9.46 0.00 0.00 3.71
2927 5638 4.275936 ACTCTTGAATTGAAACAACCGGAG 59.724 41.667 9.46 1.96 0.00 4.63
2928 5639 4.204012 ACTCTTGAATTGAAACAACCGGA 58.796 39.130 9.46 0.00 0.00 5.14
2929 5640 4.568152 ACTCTTGAATTGAAACAACCGG 57.432 40.909 0.00 0.00 0.00 5.28
2930 5641 8.029642 ACTATACTCTTGAATTGAAACAACCG 57.970 34.615 0.00 0.00 0.00 4.44
2931 5642 9.612620 CAACTATACTCTTGAATTGAAACAACC 57.387 33.333 0.00 0.00 0.00 3.77
2956 5667 9.996554 TCTGAACTATACTCTTGAATTGAAACA 57.003 29.630 0.00 0.00 0.00 2.83
2958 5669 9.140286 CGTCTGAACTATACTCTTGAATTGAAA 57.860 33.333 0.00 0.00 0.00 2.69
2959 5670 7.759886 CCGTCTGAACTATACTCTTGAATTGAA 59.240 37.037 0.00 0.00 0.00 2.69
2960 5671 7.093902 ACCGTCTGAACTATACTCTTGAATTGA 60.094 37.037 0.00 0.00 0.00 2.57
2961 5672 7.009631 CACCGTCTGAACTATACTCTTGAATTG 59.990 40.741 0.00 0.00 0.00 2.32
2962 5673 7.036220 CACCGTCTGAACTATACTCTTGAATT 58.964 38.462 0.00 0.00 0.00 2.17
2963 5674 6.153000 ACACCGTCTGAACTATACTCTTGAAT 59.847 38.462 0.00 0.00 0.00 2.57
2964 5675 5.475909 ACACCGTCTGAACTATACTCTTGAA 59.524 40.000 0.00 0.00 0.00 2.69
2965 5676 5.008331 ACACCGTCTGAACTATACTCTTGA 58.992 41.667 0.00 0.00 0.00 3.02
2966 5677 5.312120 ACACCGTCTGAACTATACTCTTG 57.688 43.478 0.00 0.00 0.00 3.02
2967 5678 5.475909 TCAACACCGTCTGAACTATACTCTT 59.524 40.000 0.00 0.00 0.00 2.85
2968 5679 5.008331 TCAACACCGTCTGAACTATACTCT 58.992 41.667 0.00 0.00 0.00 3.24
2969 5680 5.306532 TCAACACCGTCTGAACTATACTC 57.693 43.478 0.00 0.00 0.00 2.59
2970 5681 4.380655 GCTCAACACCGTCTGAACTATACT 60.381 45.833 0.00 0.00 0.00 2.12
2971 5682 3.858238 GCTCAACACCGTCTGAACTATAC 59.142 47.826 0.00 0.00 0.00 1.47
2972 5683 3.119245 GGCTCAACACCGTCTGAACTATA 60.119 47.826 0.00 0.00 0.00 1.31
2973 5684 2.353803 GGCTCAACACCGTCTGAACTAT 60.354 50.000 0.00 0.00 0.00 2.12
2974 5685 1.000506 GGCTCAACACCGTCTGAACTA 59.999 52.381 0.00 0.00 0.00 2.24
2975 5686 0.249911 GGCTCAACACCGTCTGAACT 60.250 55.000 0.00 0.00 0.00 3.01
2976 5687 1.557443 CGGCTCAACACCGTCTGAAC 61.557 60.000 0.00 0.00 45.70 3.18
2977 5688 1.300620 CGGCTCAACACCGTCTGAA 60.301 57.895 0.00 0.00 45.70 3.02
2978 5689 2.338620 CGGCTCAACACCGTCTGA 59.661 61.111 0.00 0.00 45.70 3.27
2984 5695 0.741221 GAGACCATCGGCTCAACACC 60.741 60.000 0.00 0.00 0.00 4.16
2985 5696 2.755929 GAGACCATCGGCTCAACAC 58.244 57.895 0.00 0.00 0.00 3.32
2995 5706 1.639298 GGCAAGCACACGAGACCATC 61.639 60.000 0.00 0.00 0.00 3.51
2996 5707 1.672356 GGCAAGCACACGAGACCAT 60.672 57.895 0.00 0.00 0.00 3.55
2997 5708 2.280797 GGCAAGCACACGAGACCA 60.281 61.111 0.00 0.00 0.00 4.02
2998 5709 3.414700 CGGCAAGCACACGAGACC 61.415 66.667 0.00 0.00 0.00 3.85
2999 5710 2.658707 GACGGCAAGCACACGAGAC 61.659 63.158 0.00 0.00 0.00 3.36
3000 5711 2.355837 GACGGCAAGCACACGAGA 60.356 61.111 0.00 0.00 0.00 4.04
3001 5712 2.356313 AGACGGCAAGCACACGAG 60.356 61.111 0.00 0.00 0.00 4.18
3002 5713 2.661537 CAGACGGCAAGCACACGA 60.662 61.111 0.00 0.00 0.00 4.35
3003 5714 2.430080 GAACAGACGGCAAGCACACG 62.430 60.000 0.00 0.00 0.00 4.49
3004 5715 1.279840 GAACAGACGGCAAGCACAC 59.720 57.895 0.00 0.00 0.00 3.82
3031 5742 0.179113 CAACCCACGCAACAAAGCTT 60.179 50.000 0.00 0.00 0.00 3.74
3041 5752 4.114997 CGCCCAATCAACCCACGC 62.115 66.667 0.00 0.00 0.00 5.34
3042 5753 4.114997 GCGCCCAATCAACCCACG 62.115 66.667 0.00 0.00 0.00 4.94
3071 5830 5.059161 CCAATTGACTCTGAACTTCTGTCA 58.941 41.667 7.12 0.00 36.10 3.58
3134 5907 3.925379 ACACACGTGAGATAGCATTCAA 58.075 40.909 25.01 0.00 0.00 2.69
3160 5933 2.045536 GTGGAGGGAGGCAAGCAG 60.046 66.667 0.00 0.00 0.00 4.24
3175 5948 3.249320 CAGATGTTTATCGGCATCAGGTG 59.751 47.826 7.19 0.00 42.72 4.00
3176 5949 3.134623 TCAGATGTTTATCGGCATCAGGT 59.865 43.478 7.19 0.00 42.72 4.00
3177 5950 3.496130 GTCAGATGTTTATCGGCATCAGG 59.504 47.826 7.19 0.24 42.72 3.86
3178 5951 3.183172 CGTCAGATGTTTATCGGCATCAG 59.817 47.826 7.19 0.00 42.72 2.90
3179 5952 3.123050 CGTCAGATGTTTATCGGCATCA 58.877 45.455 7.19 0.00 42.72 3.07
3180 5953 2.096713 GCGTCAGATGTTTATCGGCATC 60.097 50.000 0.00 0.00 41.13 3.91
3181 5954 1.867233 GCGTCAGATGTTTATCGGCAT 59.133 47.619 0.00 0.00 38.38 4.40
3182 5955 1.286501 GCGTCAGATGTTTATCGGCA 58.713 50.000 0.00 0.00 38.38 5.69
3183 5956 0.582005 GGCGTCAGATGTTTATCGGC 59.418 55.000 0.00 0.00 38.38 5.54
3184 5957 1.934589 TGGCGTCAGATGTTTATCGG 58.065 50.000 0.00 0.00 38.38 4.18
3185 5958 4.518217 GAATTGGCGTCAGATGTTTATCG 58.482 43.478 0.00 0.00 38.38 2.92
3186 5959 4.261197 GGGAATTGGCGTCAGATGTTTATC 60.261 45.833 0.00 0.00 0.00 1.75
3187 5960 3.632145 GGGAATTGGCGTCAGATGTTTAT 59.368 43.478 0.00 0.00 0.00 1.40
3188 5961 3.013921 GGGAATTGGCGTCAGATGTTTA 58.986 45.455 0.00 0.00 0.00 2.01
3189 5962 1.818674 GGGAATTGGCGTCAGATGTTT 59.181 47.619 0.00 0.00 0.00 2.83
3190 5963 1.463674 GGGAATTGGCGTCAGATGTT 58.536 50.000 0.00 0.00 0.00 2.71
3191 5964 0.744414 CGGGAATTGGCGTCAGATGT 60.744 55.000 0.00 0.00 0.00 3.06
3201 5974 1.029408 TGAACATCGGCGGGAATTGG 61.029 55.000 7.21 0.00 0.00 3.16
3247 6020 6.318396 ACAAAAACAAATCCAATTTCCTGTGG 59.682 34.615 0.00 0.00 36.13 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.