Multiple sequence alignment - TraesCS1A01G043900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G043900 chr1A 100.000 5968 0 0 1 5968 24335691 24341658 0.000000e+00 11021.0
1 TraesCS1A01G043900 chr1A 80.000 185 33 3 2107 2290 24337325 24337506 3.750000e-27 134.0
2 TraesCS1A01G043900 chr1A 80.000 185 33 3 1635 1816 24337797 24337980 3.750000e-27 134.0
3 TraesCS1A01G043900 chr1B 90.431 4086 273 59 591 4622 39592023 39588002 0.000000e+00 5271.0
4 TraesCS1A01G043900 chr1B 85.022 454 48 15 4736 5175 39587920 39587473 1.530000e-120 444.0
5 TraesCS1A01G043900 chr1B 90.860 186 6 5 394 574 39592184 39592005 7.730000e-59 239.0
6 TraesCS1A01G043900 chr1B 87.421 159 14 3 232 389 39594097 39593944 1.710000e-40 178.0
7 TraesCS1A01G043900 chr1B 84.000 125 19 1 2166 2290 39590933 39590810 1.050000e-22 119.0
8 TraesCS1A01G043900 chr1D 88.233 2133 128 50 651 2704 23244596 23246684 0.000000e+00 2435.0
9 TraesCS1A01G043900 chr1D 92.830 1060 72 3 3553 4612 23247889 23248944 0.000000e+00 1533.0
10 TraesCS1A01G043900 chr1D 94.184 980 48 5 3651 4622 24100626 24101604 0.000000e+00 1485.0
11 TraesCS1A01G043900 chr1D 87.612 1001 85 20 2478 3450 24097316 24098305 0.000000e+00 1125.0
12 TraesCS1A01G043900 chr1D 94.454 613 25 3 4727 5338 23248951 23249555 0.000000e+00 935.0
13 TraesCS1A01G043900 chr1D 88.220 747 67 16 2701 3426 23246841 23247587 0.000000e+00 872.0
14 TraesCS1A01G043900 chr1D 84.416 539 49 18 801 1324 24095473 24095991 1.160000e-136 497.0
15 TraesCS1A01G043900 chr1D 93.594 281 11 4 5325 5600 23253859 23254137 4.300000e-111 412.0
16 TraesCS1A01G043900 chr1D 88.235 357 23 8 229 574 23244181 23244529 5.570000e-110 409.0
17 TraesCS1A01G043900 chr1D 86.684 383 29 15 4736 5102 24101703 24102079 7.200000e-109 405.0
18 TraesCS1A01G043900 chr1D 85.876 354 32 10 227 574 24076939 24077280 1.580000e-95 361.0
19 TraesCS1A01G043900 chr1D 91.288 264 21 2 5657 5918 23255626 23255889 5.690000e-95 359.0
20 TraesCS1A01G043900 chr1D 87.006 177 16 5 638 809 24094899 24095073 6.100000e-45 193.0
21 TraesCS1A01G043900 chr1D 80.435 138 24 2 1635 1770 23246075 23246211 1.060000e-17 102.0
22 TraesCS1A01G043900 chr1D 100.000 45 0 0 606 650 24094836 24094880 3.830000e-12 84.2
23 TraesCS1A01G043900 chr1D 88.462 52 4 1 5619 5670 23254142 23254191 1.800000e-05 62.1
24 TraesCS1A01G043900 chr4B 83.254 209 33 2 1834 2041 530237635 530237428 2.200000e-44 191.0
25 TraesCS1A01G043900 chr4B 89.286 140 14 1 104 243 68663498 68663360 2.210000e-39 174.0
26 TraesCS1A01G043900 chr5A 94.872 117 6 0 4621 4737 622371720 622371604 3.670000e-42 183.0
27 TraesCS1A01G043900 chr5A 88.732 142 16 0 93 234 696840426 696840567 2.210000e-39 174.0
28 TraesCS1A01G043900 chr5A 88.732 142 16 0 93 234 696879515 696879656 2.210000e-39 174.0
29 TraesCS1A01G043900 chr5A 93.162 117 7 1 4620 4735 70255818 70255934 2.860000e-38 171.0
30 TraesCS1A01G043900 chr5A 80.676 207 31 8 1839 2040 1813170 1813372 1.040000e-32 152.0
31 TraesCS1A01G043900 chr5A 82.857 70 11 1 1953 2021 687222015 687222084 1.800000e-05 62.1
32 TraesCS1A01G043900 chr3B 97.222 108 3 0 4621 4728 494075692 494075585 3.670000e-42 183.0
33 TraesCS1A01G043900 chr7D 91.111 135 11 1 103 237 194601789 194601656 1.320000e-41 182.0
34 TraesCS1A01G043900 chr7D 91.200 125 8 3 4621 4745 271752842 271752963 3.700000e-37 167.0
35 TraesCS1A01G043900 chr7D 80.682 88 12 5 3659 3743 128747609 128747524 4.990000e-06 63.9
36 TraesCS1A01G043900 chr7D 79.545 88 13 5 3659 3743 128143121 128143036 2.320000e-04 58.4
37 TraesCS1A01G043900 chr7D 79.545 88 13 5 3659 3743 128479810 128479725 2.320000e-04 58.4
38 TraesCS1A01G043900 chr5D 90.511 137 13 0 94 230 455608065 455607929 1.320000e-41 182.0
39 TraesCS1A01G043900 chr5B 91.667 132 10 1 103 234 382489070 382488940 1.320000e-41 182.0
40 TraesCS1A01G043900 chr5B 91.667 132 10 1 99 230 439801180 439801310 1.320000e-41 182.0
41 TraesCS1A01G043900 chr5B 90.977 133 12 0 101 233 96879072 96878940 4.750000e-41 180.0
42 TraesCS1A01G043900 chr5B 93.443 61 4 0 1899 1959 49556275 49556215 2.290000e-14 91.6
43 TraesCS1A01G043900 chr2B 91.111 135 10 2 104 238 210262702 210262834 1.320000e-41 182.0
44 TraesCS1A01G043900 chr2B 93.277 119 8 0 4618 4736 213374628 213374510 6.150000e-40 176.0
45 TraesCS1A01G043900 chr2B 86.905 84 11 0 1939 2022 142448749 142448832 1.770000e-15 95.3
46 TraesCS1A01G043900 chr4A 93.443 122 6 2 4608 4729 638172311 638172430 4.750000e-41 180.0
47 TraesCS1A01G043900 chr2A 97.170 106 3 0 4621 4726 632925167 632925272 4.750000e-41 180.0
48 TraesCS1A01G043900 chr2A 96.296 108 4 0 4621 4728 361945924 361945817 1.710000e-40 178.0
49 TraesCS1A01G043900 chr2A 79.798 198 28 12 1831 2022 17955160 17955351 3.750000e-27 134.0
50 TraesCS1A01G043900 chr4D 94.690 113 6 0 4619 4731 66516566 66516454 6.150000e-40 176.0
51 TraesCS1A01G043900 chr7B 85.455 55 4 4 3659 3711 89788237 89788185 3.000000e-03 54.7
52 TraesCS1A01G043900 chr7B 85.455 55 4 4 3659 3711 89919248 89919196 3.000000e-03 54.7
53 TraesCS1A01G043900 chr7A 85.455 55 4 4 3659 3711 128775658 128775606 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G043900 chr1A 24335691 24341658 5967 False 11021.000000 11021 100.000000 1 5968 1 chr1A.!!$F1 5967
1 TraesCS1A01G043900 chr1B 39587473 39594097 6624 True 1250.200000 5271 87.546800 232 5175 5 chr1B.!!$R1 4943
2 TraesCS1A01G043900 chr1D 23244181 23249555 5374 False 1047.666667 2435 88.734500 229 5338 6 chr1D.!!$F2 5109
3 TraesCS1A01G043900 chr1D 24094836 24102079 7243 False 631.533333 1485 89.983667 606 5102 6 chr1D.!!$F4 4496
4 TraesCS1A01G043900 chr1D 23253859 23255889 2030 False 277.700000 412 91.114667 5325 5918 3 chr1D.!!$F3 593

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
51 52 0.179108 GAACTGTGGTAGCTAGGCCG 60.179 60.000 0.00 0.0 0.00 6.13 F
375 380 0.322975 CTACCTTGCACAGCAGTCCT 59.677 55.000 0.00 0.0 40.61 3.85 F
583 2349 0.391130 CGAGTGGCCTTCCATTTCGA 60.391 55.000 3.32 0.0 46.31 3.71 F
1919 4369 1.067915 GCACGGCAATTTCCTAGCAAA 60.068 47.619 3.49 0.0 0.00 3.68 F
3599 6888 0.035739 TAGAACGGAAGGGGTGCAAC 59.964 55.000 0.00 0.0 0.00 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1897 4347 0.811281 GCTAGGAAATTGCCGTGCTT 59.189 50.000 13.41 0.0 0.0 3.91 R
1936 4387 5.591643 TTTAGTTGACGAGCATGAGAAAC 57.408 39.130 0.00 0.0 0.0 2.78 R
1987 4438 5.747951 TGGCAAATCAAACATTTTTCACC 57.252 34.783 0.00 0.0 0.0 4.02 R
3836 9370 0.038526 CCATGTAGTATCGCCCGACC 60.039 60.000 0.00 0.0 0.0 4.79 R
5255 10818 0.033366 AGCTCGTGTGTATGTGTGCA 59.967 50.000 0.00 0.0 0.0 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 7.925043 TTTTTGTACTAGTGAGTTTTGGTGA 57.075 32.000 5.39 0.00 37.10 4.02
34 35 7.925043 TTTTGTACTAGTGAGTTTTGGTGAA 57.075 32.000 5.39 0.00 37.10 3.18
35 36 6.913873 TTGTACTAGTGAGTTTTGGTGAAC 57.086 37.500 5.39 0.00 37.10 3.18
36 37 6.229936 TGTACTAGTGAGTTTTGGTGAACT 57.770 37.500 5.39 0.00 42.31 3.01
37 38 6.046593 TGTACTAGTGAGTTTTGGTGAACTG 58.953 40.000 5.39 0.00 39.84 3.16
38 39 5.099042 ACTAGTGAGTTTTGGTGAACTGT 57.901 39.130 0.00 0.00 39.84 3.55
39 40 4.876107 ACTAGTGAGTTTTGGTGAACTGTG 59.124 41.667 0.00 0.00 39.84 3.66
40 41 3.016736 AGTGAGTTTTGGTGAACTGTGG 58.983 45.455 0.00 0.00 39.84 4.17
41 42 2.752903 GTGAGTTTTGGTGAACTGTGGT 59.247 45.455 0.00 0.00 39.84 4.16
42 43 3.942748 GTGAGTTTTGGTGAACTGTGGTA 59.057 43.478 0.00 0.00 39.84 3.25
43 44 4.035208 GTGAGTTTTGGTGAACTGTGGTAG 59.965 45.833 0.00 0.00 39.84 3.18
44 45 2.949644 AGTTTTGGTGAACTGTGGTAGC 59.050 45.455 0.00 0.00 38.39 3.58
45 46 2.949644 GTTTTGGTGAACTGTGGTAGCT 59.050 45.455 0.00 0.00 0.00 3.32
46 47 4.131596 GTTTTGGTGAACTGTGGTAGCTA 58.868 43.478 0.00 0.00 0.00 3.32
47 48 3.678056 TTGGTGAACTGTGGTAGCTAG 57.322 47.619 0.00 0.00 0.00 3.42
48 49 1.899814 TGGTGAACTGTGGTAGCTAGG 59.100 52.381 0.00 0.00 0.00 3.02
49 50 1.405661 GGTGAACTGTGGTAGCTAGGC 60.406 57.143 0.00 0.00 0.00 3.93
50 51 0.902531 TGAACTGTGGTAGCTAGGCC 59.097 55.000 0.00 0.00 0.00 5.19
51 52 0.179108 GAACTGTGGTAGCTAGGCCG 60.179 60.000 0.00 0.00 0.00 6.13
52 53 0.903454 AACTGTGGTAGCTAGGCCGT 60.903 55.000 0.00 0.00 0.00 5.68
53 54 1.321074 ACTGTGGTAGCTAGGCCGTC 61.321 60.000 0.00 0.00 0.00 4.79
54 55 1.304630 TGTGGTAGCTAGGCCGTCA 60.305 57.895 0.00 0.00 0.00 4.35
55 56 1.320344 TGTGGTAGCTAGGCCGTCAG 61.320 60.000 0.00 0.00 0.00 3.51
56 57 1.756950 TGGTAGCTAGGCCGTCAGG 60.757 63.158 0.00 0.00 41.62 3.86
90 91 2.828868 GGCGGTGCCTGGATCATA 59.171 61.111 0.00 0.00 46.69 2.15
91 92 1.376466 GGCGGTGCCTGGATCATAT 59.624 57.895 0.00 0.00 46.69 1.78
92 93 0.613260 GGCGGTGCCTGGATCATATA 59.387 55.000 0.00 0.00 46.69 0.86
93 94 1.210478 GGCGGTGCCTGGATCATATAT 59.790 52.381 0.00 0.00 46.69 0.86
94 95 2.283298 GCGGTGCCTGGATCATATATG 58.717 52.381 6.36 6.36 0.00 1.78
95 96 2.093500 GCGGTGCCTGGATCATATATGA 60.093 50.000 17.56 17.56 41.70 2.15
96 97 3.619733 GCGGTGCCTGGATCATATATGAA 60.620 47.826 19.03 2.63 40.69 2.57
97 98 4.186926 CGGTGCCTGGATCATATATGAAG 58.813 47.826 19.03 11.86 40.69 3.02
98 99 4.081476 CGGTGCCTGGATCATATATGAAGA 60.081 45.833 19.03 5.66 40.69 2.87
99 100 5.569428 CGGTGCCTGGATCATATATGAAGAA 60.569 44.000 19.03 6.91 40.69 2.52
100 101 6.240894 GGTGCCTGGATCATATATGAAGAAA 58.759 40.000 19.03 5.29 40.69 2.52
101 102 6.150140 GGTGCCTGGATCATATATGAAGAAAC 59.850 42.308 19.03 12.25 40.69 2.78
102 103 6.712095 GTGCCTGGATCATATATGAAGAAACA 59.288 38.462 19.03 10.60 40.69 2.83
103 104 7.392673 GTGCCTGGATCATATATGAAGAAACAT 59.607 37.037 19.03 0.99 40.69 2.71
104 105 8.605065 TGCCTGGATCATATATGAAGAAACATA 58.395 33.333 19.03 1.28 40.69 2.29
105 106 8.887717 GCCTGGATCATATATGAAGAAACATAC 58.112 37.037 19.03 2.78 40.69 2.39
109 110 9.606631 GGATCATATATGAAGAAACATACTCCC 57.393 37.037 19.03 0.00 40.69 4.30
112 113 8.816894 TCATATATGAAGAAACATACTCCCTCC 58.183 37.037 13.12 0.00 35.91 4.30
113 114 3.887621 TGAAGAAACATACTCCCTCCG 57.112 47.619 0.00 0.00 0.00 4.63
114 115 3.170717 TGAAGAAACATACTCCCTCCGT 58.829 45.455 0.00 0.00 0.00 4.69
115 116 4.346730 TGAAGAAACATACTCCCTCCGTA 58.653 43.478 0.00 0.00 0.00 4.02
116 117 4.960469 TGAAGAAACATACTCCCTCCGTAT 59.040 41.667 0.00 0.00 0.00 3.06
117 118 5.068723 TGAAGAAACATACTCCCTCCGTATC 59.931 44.000 0.00 0.00 0.00 2.24
118 119 4.543689 AGAAACATACTCCCTCCGTATCA 58.456 43.478 0.00 0.00 0.00 2.15
119 120 4.960469 AGAAACATACTCCCTCCGTATCAA 59.040 41.667 0.00 0.00 0.00 2.57
120 121 5.424252 AGAAACATACTCCCTCCGTATCAAA 59.576 40.000 0.00 0.00 0.00 2.69
121 122 5.687166 AACATACTCCCTCCGTATCAAAA 57.313 39.130 0.00 0.00 0.00 2.44
122 123 5.888982 ACATACTCCCTCCGTATCAAAAT 57.111 39.130 0.00 0.00 0.00 1.82
123 124 6.989155 ACATACTCCCTCCGTATCAAAATA 57.011 37.500 0.00 0.00 0.00 1.40
124 125 6.756221 ACATACTCCCTCCGTATCAAAATAC 58.244 40.000 0.00 0.00 35.39 1.89
125 126 6.553852 ACATACTCCCTCCGTATCAAAATACT 59.446 38.462 0.00 0.00 36.40 2.12
126 127 5.952347 ACTCCCTCCGTATCAAAATACTT 57.048 39.130 0.00 0.00 36.40 2.24
127 128 8.582437 CATACTCCCTCCGTATCAAAATACTTA 58.418 37.037 0.00 0.00 36.40 2.24
128 129 7.613551 ACTCCCTCCGTATCAAAATACTTAT 57.386 36.000 0.00 0.00 36.40 1.73
129 130 7.668492 ACTCCCTCCGTATCAAAATACTTATC 58.332 38.462 0.00 0.00 36.40 1.75
130 131 7.289317 ACTCCCTCCGTATCAAAATACTTATCA 59.711 37.037 0.00 0.00 36.40 2.15
131 132 8.202461 TCCCTCCGTATCAAAATACTTATCAT 57.798 34.615 0.00 0.00 36.40 2.45
132 133 8.311836 TCCCTCCGTATCAAAATACTTATCATC 58.688 37.037 0.00 0.00 36.40 2.92
133 134 8.094548 CCCTCCGTATCAAAATACTTATCATCA 58.905 37.037 0.00 0.00 36.40 3.07
134 135 9.489084 CCTCCGTATCAAAATACTTATCATCAA 57.511 33.333 0.00 0.00 36.40 2.57
216 217 8.915871 ATTCATTTTGATGACAAGTATTTCCG 57.084 30.769 0.00 0.00 37.32 4.30
217 218 7.680442 TCATTTTGATGACAAGTATTTCCGA 57.320 32.000 0.00 0.00 37.32 4.55
218 219 8.105097 TCATTTTGATGACAAGTATTTCCGAA 57.895 30.769 0.00 0.00 37.32 4.30
219 220 8.739039 TCATTTTGATGACAAGTATTTCCGAAT 58.261 29.630 0.00 0.00 37.32 3.34
220 221 8.800972 CATTTTGATGACAAGTATTTCCGAATG 58.199 33.333 0.00 0.00 37.32 2.67
221 222 6.435430 TTGATGACAAGTATTTCCGAATGG 57.565 37.500 0.00 0.00 0.00 3.16
222 223 5.739959 TGATGACAAGTATTTCCGAATGGA 58.260 37.500 0.00 0.00 44.61 3.41
223 224 7.148255 TTTGATGACAAGTATTTCCGAATGGAG 60.148 37.037 0.00 0.00 40.39 3.86
237 238 7.036154 TCCGAATGGAGGGAGTAGTATATTA 57.964 40.000 0.00 0.00 40.17 0.98
247 248 8.846423 AGGGAGTAGTATATTAGGATGGAATG 57.154 38.462 0.00 0.00 0.00 2.67
248 249 8.633724 AGGGAGTAGTATATTAGGATGGAATGA 58.366 37.037 0.00 0.00 0.00 2.57
249 250 9.268282 GGGAGTAGTATATTAGGATGGAATGAA 57.732 37.037 0.00 0.00 0.00 2.57
375 380 0.322975 CTACCTTGCACAGCAGTCCT 59.677 55.000 0.00 0.00 40.61 3.85
516 2282 3.733337 GTCAGGAAAGATGACACACTGT 58.267 45.455 1.37 0.00 45.18 3.55
517 2283 4.883083 GTCAGGAAAGATGACACACTGTA 58.117 43.478 1.37 0.00 45.18 2.74
518 2284 4.686554 GTCAGGAAAGATGACACACTGTAC 59.313 45.833 1.37 0.00 45.18 2.90
519 2285 3.675225 CAGGAAAGATGACACACTGTACG 59.325 47.826 0.00 0.00 0.00 3.67
560 2326 3.181505 TGCAAACGTGTGTGTTTAAGAGG 60.182 43.478 7.72 0.00 39.94 3.69
561 2327 3.064271 GCAAACGTGTGTGTTTAAGAGGA 59.936 43.478 7.72 0.00 39.94 3.71
562 2328 4.785341 GCAAACGTGTGTGTTTAAGAGGAG 60.785 45.833 7.72 0.00 39.94 3.69
563 2329 2.480845 ACGTGTGTGTTTAAGAGGAGC 58.519 47.619 0.00 0.00 0.00 4.70
564 2330 1.798813 CGTGTGTGTTTAAGAGGAGCC 59.201 52.381 0.00 0.00 0.00 4.70
565 2331 1.798813 GTGTGTGTTTAAGAGGAGCCG 59.201 52.381 0.00 0.00 0.00 5.52
566 2332 1.689813 TGTGTGTTTAAGAGGAGCCGA 59.310 47.619 0.00 0.00 0.00 5.54
567 2333 2.288825 TGTGTGTTTAAGAGGAGCCGAG 60.289 50.000 0.00 0.00 0.00 4.63
568 2334 1.968493 TGTGTTTAAGAGGAGCCGAGT 59.032 47.619 0.00 0.00 0.00 4.18
569 2335 2.288825 TGTGTTTAAGAGGAGCCGAGTG 60.289 50.000 0.00 0.00 0.00 3.51
570 2336 1.275291 TGTTTAAGAGGAGCCGAGTGG 59.725 52.381 0.00 0.00 38.77 4.00
580 2346 4.743018 CCGAGTGGCCTTCCATTT 57.257 55.556 3.32 0.00 45.62 2.32
581 2347 2.482326 CCGAGTGGCCTTCCATTTC 58.518 57.895 3.32 0.00 45.62 2.17
582 2348 1.369091 CCGAGTGGCCTTCCATTTCG 61.369 60.000 3.32 11.60 45.62 3.46
583 2349 0.391130 CGAGTGGCCTTCCATTTCGA 60.391 55.000 3.32 0.00 46.31 3.71
584 2350 1.821216 GAGTGGCCTTCCATTTCGAA 58.179 50.000 3.32 0.00 45.62 3.71
585 2351 1.740025 GAGTGGCCTTCCATTTCGAAG 59.260 52.381 3.32 0.00 45.62 3.79
586 2352 1.351017 AGTGGCCTTCCATTTCGAAGA 59.649 47.619 3.32 0.00 45.62 2.87
587 2353 2.159382 GTGGCCTTCCATTTCGAAGAA 58.841 47.619 3.32 0.00 45.62 2.52
588 2354 2.556622 GTGGCCTTCCATTTCGAAGAAA 59.443 45.455 3.32 0.00 45.62 2.52
589 2355 3.005367 GTGGCCTTCCATTTCGAAGAAAA 59.995 43.478 3.32 0.00 45.62 2.29
590 2356 3.639094 TGGCCTTCCATTTCGAAGAAAAA 59.361 39.130 3.32 0.00 41.57 1.94
713 2510 5.716703 ACTTGCACTGGAATAAAATTAGCCT 59.283 36.000 0.00 0.00 0.00 4.58
721 2519 6.690530 TGGAATAAAATTAGCCTGCATATGC 58.309 36.000 21.09 21.09 42.50 3.14
793 2595 1.130749 AGTAGTACTCTGACGCGCAAG 59.869 52.381 5.73 3.69 43.44 4.01
862 3073 5.181433 GCTAATCAAAACGTCCCTCTTTCTT 59.819 40.000 0.00 0.00 0.00 2.52
870 3107 4.633175 ACGTCCCTCTTTCTTTCTCTTTC 58.367 43.478 0.00 0.00 0.00 2.62
958 3201 2.273370 ACCGACATACTAACTGCACG 57.727 50.000 0.00 0.00 0.00 5.34
1141 3399 5.009631 ACTGCTTTTCCTATGTGCATACAA 58.990 37.500 0.00 0.00 40.84 2.41
1174 3432 5.748402 TCACTTCTCATGCATACTTTCCAT 58.252 37.500 0.00 0.00 0.00 3.41
1223 3481 3.520721 AGTTACCTGCCGGTTTATACCTT 59.479 43.478 4.69 0.00 42.13 3.50
1226 3484 2.574824 ACCTGCCGGTTTATACCTTTCT 59.425 45.455 1.90 0.00 42.13 2.52
1229 3487 5.187687 CCTGCCGGTTTATACCTTTCTTAA 58.812 41.667 1.90 0.00 42.66 1.85
1231 3489 6.017357 CCTGCCGGTTTATACCTTTCTTAATC 60.017 42.308 1.90 0.00 42.66 1.75
1270 3528 5.879223 TGCATGCATTTTTGTTTATTAGGGG 59.121 36.000 18.46 0.00 0.00 4.79
1271 3529 5.879777 GCATGCATTTTTGTTTATTAGGGGT 59.120 36.000 14.21 0.00 0.00 4.95
1272 3530 7.044798 GCATGCATTTTTGTTTATTAGGGGTA 58.955 34.615 14.21 0.00 0.00 3.69
1273 3531 7.714813 GCATGCATTTTTGTTTATTAGGGGTAT 59.285 33.333 14.21 0.00 0.00 2.73
1274 3532 9.044150 CATGCATTTTTGTTTATTAGGGGTATG 57.956 33.333 0.00 0.00 0.00 2.39
1276 3534 9.256228 TGCATTTTTGTTTATTAGGGGTATGTA 57.744 29.630 0.00 0.00 0.00 2.29
1280 3538 7.826918 TTTGTTTATTAGGGGTATGTATGCC 57.173 36.000 0.00 0.00 0.00 4.40
1281 3539 6.517013 TGTTTATTAGGGGTATGTATGCCA 57.483 37.500 1.46 0.00 33.83 4.92
1282 3540 7.097623 TGTTTATTAGGGGTATGTATGCCAT 57.902 36.000 1.46 0.00 37.58 4.40
1283 3541 7.172342 TGTTTATTAGGGGTATGTATGCCATC 58.828 38.462 1.46 0.00 34.86 3.51
1286 3544 5.922960 TTAGGGGTATGTATGCCATCTTT 57.077 39.130 1.46 0.00 34.86 2.52
1288 3546 4.729868 AGGGGTATGTATGCCATCTTTTC 58.270 43.478 1.46 0.00 34.86 2.29
1291 3549 5.241728 GGGGTATGTATGCCATCTTTTCTTC 59.758 44.000 1.46 0.00 34.86 2.87
1300 3558 5.132502 TGCCATCTTTTCTTCTGTTCTTGA 58.867 37.500 0.00 0.00 0.00 3.02
1304 3562 6.261826 CCATCTTTTCTTCTGTTCTTGACACT 59.738 38.462 0.00 0.00 33.82 3.55
1305 3563 6.668541 TCTTTTCTTCTGTTCTTGACACTG 57.331 37.500 0.00 0.00 33.82 3.66
1311 3569 4.537135 TCTGTTCTTGACACTGGGTATC 57.463 45.455 0.00 0.00 33.82 2.24
1316 3574 3.181329 TCTTGACACTGGGTATCCATGT 58.819 45.455 9.13 9.13 43.11 3.21
1340 3765 8.974408 TGTATGTCATCGTTAATATGCTTACAC 58.026 33.333 0.00 0.00 0.00 2.90
1357 3782 7.636326 TGCTTACACTTAGCTTTTGTTTAGTC 58.364 34.615 0.00 0.00 39.38 2.59
1407 3832 5.393027 GCATTATTTTGGTTGGATCGACAGT 60.393 40.000 0.00 0.00 0.00 3.55
1413 3838 3.857052 TGGTTGGATCGACAGTTGTATC 58.143 45.455 0.00 0.00 0.00 2.24
1465 3890 4.562143 GCTTGGCCAATGAAGAATTTCTGT 60.562 41.667 20.85 0.00 34.31 3.41
1495 3928 6.884295 CCTTCTCAAAGGTCCATGTGTAAATA 59.116 38.462 0.00 0.00 46.10 1.40
1500 3933 7.881142 TCAAAGGTCCATGTGTAAATAACAAG 58.119 34.615 0.00 0.00 40.63 3.16
1515 3950 6.455360 AATAACAAGTGGAGGTGCAATATG 57.545 37.500 0.00 0.00 0.00 1.78
1532 3967 6.903419 GCAATATGTAGTTGCCTAATTCTCC 58.097 40.000 0.00 0.00 44.65 3.71
1533 3968 6.486657 GCAATATGTAGTTGCCTAATTCTCCA 59.513 38.462 0.00 0.00 44.65 3.86
1541 3977 4.098914 TGCCTAATTCTCCAACAACACT 57.901 40.909 0.00 0.00 0.00 3.55
1557 3993 8.442384 CCAACAACACTTGCCAATTATTATTTC 58.558 33.333 0.00 0.00 0.00 2.17
1576 4012 4.503741 TTCTGGAAAAGAAAGCAATCGG 57.496 40.909 0.00 0.00 42.09 4.18
1587 4025 5.528870 AGAAAGCAATCGGTTTTTACCTTG 58.471 37.500 0.00 0.00 42.73 3.61
1598 4036 5.699458 CGGTTTTTACCTTGTAGTCATGACT 59.301 40.000 30.11 30.11 45.02 3.41
1633 4079 8.831715 AGCCCTTAAAAATTACTGTCAAATTG 57.168 30.769 0.00 0.00 0.00 2.32
1650 4096 7.765819 TGTCAAATTGTCTCATACTTCATCGAT 59.234 33.333 0.00 0.00 0.00 3.59
1662 4108 4.315803 ACTTCATCGATTTCAACCGAGTT 58.684 39.130 0.00 0.00 38.25 3.01
1679 4125 5.577164 ACCGAGTTCTATGAATTTCTTGTCG 59.423 40.000 0.00 0.00 0.00 4.35
1686 4132 9.409949 GTTCTATGAATTTCTTGTCGAATTACG 57.590 33.333 0.00 0.00 44.09 3.18
1707 4153 3.772853 AAACTGCTCAGGCGCCACA 62.773 57.895 31.54 19.43 42.25 4.17
1805 4254 7.280205 GGTACATGATTGTCGGTTTTAGAGAAT 59.720 37.037 0.00 0.00 37.28 2.40
1844 4294 4.815040 TGCAAAAAGTCATGGCAAATTG 57.185 36.364 0.00 2.32 0.00 2.32
1845 4295 4.197750 TGCAAAAAGTCATGGCAAATTGT 58.802 34.783 0.00 0.00 0.00 2.71
1848 4298 5.612276 GCAAAAAGTCATGGCAAATTGTACG 60.612 40.000 0.00 0.00 0.00 3.67
1879 4329 3.427503 GGCAATTTATGTTGACGTGAGGG 60.428 47.826 0.00 0.00 0.00 4.30
1883 4333 3.973206 TTATGTTGACGTGAGGGTGAT 57.027 42.857 0.00 0.00 0.00 3.06
1897 4347 7.879160 ACGTGAGGGTGATAAATTTAGTTTACA 59.121 33.333 3.94 0.00 35.23 2.41
1914 4364 1.904287 ACAAGCACGGCAATTTCCTA 58.096 45.000 0.00 0.00 0.00 2.94
1919 4369 1.067915 GCACGGCAATTTCCTAGCAAA 60.068 47.619 3.49 0.00 0.00 3.68
1987 4438 4.448537 TCCTTGGCAAACATATTTTCCG 57.551 40.909 0.00 0.00 34.12 4.30
1988 4439 3.194542 TCCTTGGCAAACATATTTTCCGG 59.805 43.478 0.00 0.00 34.12 5.14
2142 4593 9.558648 CAACACAATCAATCGAAATCTATGAAA 57.441 29.630 0.00 0.00 0.00 2.69
2272 4783 7.665559 ACATCTGGTTCAAGATTGTTAGCTTTA 59.334 33.333 0.00 0.00 34.60 1.85
2315 4826 9.104965 TGGAAGAATAACTATTTGTCGTATTGG 57.895 33.333 0.00 0.00 0.00 3.16
2432 5102 2.322658 TGAGTGTCTTTTACCCCTCGT 58.677 47.619 0.00 0.00 31.10 4.18
2439 5109 4.240888 GTCTTTTACCCCTCGTGTACTTC 58.759 47.826 0.00 0.00 0.00 3.01
2441 5111 3.665745 TTTACCCCTCGTGTACTTCAC 57.334 47.619 0.00 0.00 43.03 3.18
2465 5135 8.665685 CACAGTTTCTATCTATTTGGTGGTAAC 58.334 37.037 0.00 0.00 0.00 2.50
2758 5817 9.199982 TGAAGTTTAACCACGTTTATAGAAGAG 57.800 33.333 0.00 0.00 0.00 2.85
2768 5827 8.592998 CCACGTTTATAGAAGAGATAACAACAC 58.407 37.037 0.00 0.00 0.00 3.32
2769 5828 9.135843 CACGTTTATAGAAGAGATAACAACACA 57.864 33.333 0.00 0.00 0.00 3.72
2775 5834 6.712241 AGAAGAGATAACAACACACATTCG 57.288 37.500 0.00 0.00 0.00 3.34
2880 5956 9.988350 AATGTTAGTATTTTTCTGCAATCTACG 57.012 29.630 0.00 0.00 0.00 3.51
2921 6000 8.736751 AAAACAAATGTTGCTAAGTAATACGG 57.263 30.769 0.00 0.00 38.44 4.02
2924 6003 8.276252 ACAAATGTTGCTAAGTAATACGGAAT 57.724 30.769 0.00 0.00 0.00 3.01
2925 6005 8.181573 ACAAATGTTGCTAAGTAATACGGAATG 58.818 33.333 0.00 0.00 0.00 2.67
2997 6077 1.097547 GCATATTCCAGCGTGGCAGT 61.098 55.000 0.00 0.00 37.47 4.40
3009 6089 2.359230 GGCAGTCAGTGGGCAGAC 60.359 66.667 0.00 0.00 35.02 3.51
3012 6092 3.314331 AGTCAGTGGGCAGACGGG 61.314 66.667 0.00 0.00 39.67 5.28
3126 6206 1.219393 CCACTTCTCCTTCCTCCGC 59.781 63.158 0.00 0.00 0.00 5.54
3204 6284 1.672356 CACCAAGCCCGACAAGGAG 60.672 63.158 0.00 0.00 45.00 3.69
3285 6365 0.539986 TACTCACCGGAATTCCTGCC 59.460 55.000 22.05 0.00 0.00 4.85
3376 6456 2.422597 TGTGCCAGTTAACCTTCATCG 58.577 47.619 0.88 0.00 0.00 3.84
3398 6488 6.539324 TCGGCGTAAGATTGTTCTTAATTTG 58.461 36.000 6.85 0.00 44.12 2.32
3436 6527 3.735591 TGAAAGTTCTACCTTTGTCCCG 58.264 45.455 0.00 0.00 34.87 5.14
3568 6857 6.459923 AGTTTGACTTAGAACAAGCCTAGAG 58.540 40.000 0.00 0.00 0.00 2.43
3571 6860 7.534723 TTGACTTAGAACAAGCCTAGAGTTA 57.465 36.000 0.00 0.00 0.00 2.24
3572 6861 6.921914 TGACTTAGAACAAGCCTAGAGTTAC 58.078 40.000 0.00 0.00 0.00 2.50
3575 6864 7.548967 ACTTAGAACAAGCCTAGAGTTACATC 58.451 38.462 0.00 0.00 0.00 3.06
3599 6888 0.035739 TAGAACGGAAGGGGTGCAAC 59.964 55.000 0.00 0.00 0.00 4.17
3649 6938 0.249699 ACGCACATGTTCGAGGTGAA 60.250 50.000 24.39 0.00 38.73 3.18
3764 9298 2.355363 GACGCGTGCTACACCACA 60.355 61.111 20.70 0.00 35.47 4.17
3863 9397 0.314302 GATACTACATGGCGGCGTCT 59.686 55.000 14.51 0.00 0.00 4.18
3869 9403 2.524394 ATGGCGGCGTCTCCCTAT 60.524 61.111 14.51 0.00 0.00 2.57
4004 9545 2.963320 AACGACACGAACACCGCC 60.963 61.111 0.00 0.00 43.32 6.13
4032 9573 2.915659 TCTCCAACCTCACCGCGT 60.916 61.111 4.92 0.00 0.00 6.01
4328 9869 1.736282 CGCCACGATGCAGTACACA 60.736 57.895 0.00 0.00 0.00 3.72
4608 10151 6.054941 CCAGGTACACATCATGCACTAAATA 58.945 40.000 0.00 0.00 0.00 1.40
4609 10152 6.712095 CCAGGTACACATCATGCACTAAATAT 59.288 38.462 0.00 0.00 0.00 1.28
4632 10179 3.684408 ATTCCTACTACTCCCTCCGTT 57.316 47.619 0.00 0.00 0.00 4.44
4633 10180 2.725221 TCCTACTACTCCCTCCGTTC 57.275 55.000 0.00 0.00 0.00 3.95
4634 10181 1.918262 TCCTACTACTCCCTCCGTTCA 59.082 52.381 0.00 0.00 0.00 3.18
4635 10182 2.022934 CCTACTACTCCCTCCGTTCAC 58.977 57.143 0.00 0.00 0.00 3.18
4636 10183 2.356947 CCTACTACTCCCTCCGTTCACT 60.357 54.545 0.00 0.00 0.00 3.41
4637 10184 2.305858 ACTACTCCCTCCGTTCACTT 57.694 50.000 0.00 0.00 0.00 3.16
4638 10185 2.606378 ACTACTCCCTCCGTTCACTTT 58.394 47.619 0.00 0.00 0.00 2.66
4641 10188 4.776308 ACTACTCCCTCCGTTCACTTTTAT 59.224 41.667 0.00 0.00 0.00 1.40
4642 10189 5.954150 ACTACTCCCTCCGTTCACTTTTATA 59.046 40.000 0.00 0.00 0.00 0.98
4643 10190 5.750352 ACTCCCTCCGTTCACTTTTATAA 57.250 39.130 0.00 0.00 0.00 0.98
4645 10192 5.093849 TCCCTCCGTTCACTTTTATAAGG 57.906 43.478 0.00 0.00 35.61 2.69
4647 10194 3.626217 CCTCCGTTCACTTTTATAAGGCC 59.374 47.826 0.00 0.00 35.61 5.19
4648 10195 4.514401 CTCCGTTCACTTTTATAAGGCCT 58.486 43.478 0.00 0.00 35.61 5.19
4652 10199 6.941436 TCCGTTCACTTTTATAAGGCCTTAAA 59.059 34.615 28.50 18.33 35.61 1.52
4653 10200 7.120138 TCCGTTCACTTTTATAAGGCCTTAAAG 59.880 37.037 28.50 27.60 35.61 1.85
4654 10201 7.120138 CCGTTCACTTTTATAAGGCCTTAAAGA 59.880 37.037 32.05 20.33 35.61 2.52
4655 10202 7.961283 CGTTCACTTTTATAAGGCCTTAAAGAC 59.039 37.037 32.05 22.69 35.61 3.01
4656 10203 8.789762 GTTCACTTTTATAAGGCCTTAAAGACA 58.210 33.333 32.05 20.36 35.61 3.41
4658 10205 9.528489 TCACTTTTATAAGGCCTTAAAGACATT 57.472 29.630 32.05 18.10 35.61 2.71
4663 10210 9.747898 TTTATAAGGCCTTAAAGACATTTCAGA 57.252 29.630 28.50 3.11 0.00 3.27
4664 10211 5.966742 AAGGCCTTAAAGACATTTCAGAC 57.033 39.130 18.87 0.00 0.00 3.51
4665 10212 4.985538 AGGCCTTAAAGACATTTCAGACA 58.014 39.130 0.00 0.00 0.00 3.41
4667 10214 6.012745 AGGCCTTAAAGACATTTCAGACAAT 58.987 36.000 0.00 0.00 0.00 2.71
4668 10215 6.071728 AGGCCTTAAAGACATTTCAGACAATG 60.072 38.462 0.00 0.00 39.67 2.82
4670 10217 6.583806 GCCTTAAAGACATTTCAGACAATGTG 59.416 38.462 12.82 2.69 45.55 3.21
4671 10218 6.583806 CCTTAAAGACATTTCAGACAATGTGC 59.416 38.462 12.82 7.29 45.55 4.57
4675 10222 5.904941 AGACATTTCAGACAATGTGCAAAA 58.095 33.333 12.82 0.00 45.55 2.44
4676 10223 5.750067 AGACATTTCAGACAATGTGCAAAAC 59.250 36.000 12.82 2.36 45.55 2.43
4678 10225 5.521010 ACATTTCAGACAATGTGCAAAACAG 59.479 36.000 0.00 0.00 44.19 3.16
4679 10226 3.082698 TCAGACAATGTGCAAAACAGC 57.917 42.857 0.00 0.00 43.64 4.40
4681 10228 1.069049 AGACAATGTGCAAAACAGCCC 59.931 47.619 0.00 0.00 43.64 5.19
4683 10230 1.417145 ACAATGTGCAAAACAGCCCAT 59.583 42.857 0.00 0.00 43.64 4.00
4684 10231 2.158784 ACAATGTGCAAAACAGCCCATT 60.159 40.909 0.00 0.00 43.64 3.16
4686 10233 2.706339 TGTGCAAAACAGCCCATTTT 57.294 40.000 0.00 0.00 33.78 1.82
4687 10234 2.559440 TGTGCAAAACAGCCCATTTTC 58.441 42.857 0.00 0.00 33.78 2.29
4688 10235 2.093288 TGTGCAAAACAGCCCATTTTCA 60.093 40.909 0.00 0.00 33.78 2.69
4689 10236 2.545106 GTGCAAAACAGCCCATTTTCAG 59.455 45.455 0.00 0.00 0.00 3.02
4690 10237 1.532437 GCAAAACAGCCCATTTTCAGC 59.468 47.619 0.00 0.00 0.00 4.26
4691 10238 2.807837 GCAAAACAGCCCATTTTCAGCT 60.808 45.455 0.00 0.00 37.32 4.24
4696 10243 1.542492 AGCCCATTTTCAGCTGTCTG 58.458 50.000 14.67 7.06 41.67 3.51
4711 10258 8.846943 TCAGCTGTCTGAAATGACTTATAAAA 57.153 30.769 14.67 0.00 45.69 1.52
4713 10260 8.725148 CAGCTGTCTGAAATGACTTATAAAAGT 58.275 33.333 5.25 0.00 44.58 2.66
4715 10262 8.721478 GCTGTCTGAAATGACTTATAAAAGTGA 58.279 33.333 0.00 0.00 46.09 3.41
4718 10265 9.530129 GTCTGAAATGACTTATAAAAGTGAACG 57.470 33.333 0.00 0.00 46.09 3.95
4719 10266 8.717821 TCTGAAATGACTTATAAAAGTGAACGG 58.282 33.333 0.00 0.00 46.09 4.44
4720 10267 8.610248 TGAAATGACTTATAAAAGTGAACGGA 57.390 30.769 0.00 0.00 46.09 4.69
4721 10268 8.717821 TGAAATGACTTATAAAAGTGAACGGAG 58.282 33.333 0.00 0.00 46.09 4.63
4722 10269 7.611213 AATGACTTATAAAAGTGAACGGAGG 57.389 36.000 0.00 0.00 46.09 4.30
4723 10270 5.484715 TGACTTATAAAAGTGAACGGAGGG 58.515 41.667 0.00 0.00 46.09 4.30
4724 10271 5.246656 TGACTTATAAAAGTGAACGGAGGGA 59.753 40.000 0.00 0.00 46.09 4.20
4725 10272 5.731591 ACTTATAAAAGTGAACGGAGGGAG 58.268 41.667 0.00 0.00 44.40 4.30
4726 10273 5.247792 ACTTATAAAAGTGAACGGAGGGAGT 59.752 40.000 0.00 0.00 44.40 3.85
4727 10274 6.438425 ACTTATAAAAGTGAACGGAGGGAGTA 59.562 38.462 0.00 0.00 44.40 2.59
4728 10275 3.679824 AAAAGTGAACGGAGGGAGTAG 57.320 47.619 0.00 0.00 0.00 2.57
4729 10276 2.305858 AAGTGAACGGAGGGAGTAGT 57.694 50.000 0.00 0.00 0.00 2.73
4730 10277 3.446442 AAGTGAACGGAGGGAGTAGTA 57.554 47.619 0.00 0.00 0.00 1.82
4731 10278 3.666345 AGTGAACGGAGGGAGTAGTAT 57.334 47.619 0.00 0.00 0.00 2.12
4732 10279 4.785346 AGTGAACGGAGGGAGTAGTATA 57.215 45.455 0.00 0.00 0.00 1.47
4733 10280 5.321934 AGTGAACGGAGGGAGTAGTATAT 57.678 43.478 0.00 0.00 0.00 0.86
4787 10334 5.882000 TGTGATGTTGTTAGCTTGCTATGAT 59.118 36.000 2.99 0.00 0.00 2.45
4969 10518 0.179156 GACCTGCCGCAATGTTGATG 60.179 55.000 0.00 0.00 0.00 3.07
4979 10528 4.578516 CCGCAATGTTGATGGATAACCTAA 59.421 41.667 0.00 0.00 37.04 2.69
5023 10586 7.898014 TCTGTACATGAATAAAGAGGAGCTA 57.102 36.000 0.00 0.00 0.00 3.32
5116 10679 8.469200 AGTTTGGTTGTAATATGATTGTGATGG 58.531 33.333 0.00 0.00 0.00 3.51
5129 10692 2.571212 TGTGATGGGTGTTTGTCTGTC 58.429 47.619 0.00 0.00 0.00 3.51
5246 10809 4.726416 ACTCTCTAAAACAATGCAATGCG 58.274 39.130 0.46 0.00 0.00 4.73
5286 10849 4.486090 ACACACGAGCTAAGACAACATAG 58.514 43.478 0.00 0.00 0.00 2.23
5306 10869 1.758440 AACCGAGAAGAGCAGCACCA 61.758 55.000 0.00 0.00 0.00 4.17
5309 10872 0.601046 CGAGAAGAGCAGCACCAACA 60.601 55.000 0.00 0.00 0.00 3.33
5372 10935 3.557577 TCGTGAAATTGCACAATCCAG 57.442 42.857 16.90 0.00 38.69 3.86
5398 10961 2.918712 AGGATGATGGAATGTCGGTC 57.081 50.000 0.00 0.00 0.00 4.79
5426 10989 7.541162 CAACATCTTGAGAATTGAGCCATTTA 58.459 34.615 3.50 0.00 0.00 1.40
5435 10998 7.177216 TGAGAATTGAGCCATTTATCAAACTGT 59.823 33.333 5.32 0.00 38.80 3.55
5444 11007 5.480073 CCATTTATCAAACTGTTTGGGAGGA 59.520 40.000 27.52 12.51 40.98 3.71
5456 11019 1.289160 TGGGAGGATGGGAGAACAAG 58.711 55.000 0.00 0.00 0.00 3.16
5483 11046 8.888579 ATGCATGTAAAATAGTACTACCTCAC 57.111 34.615 4.31 2.53 0.00 3.51
5484 11047 8.074613 TGCATGTAAAATAGTACTACCTCACT 57.925 34.615 4.31 0.00 0.00 3.41
5485 11048 7.979537 TGCATGTAAAATAGTACTACCTCACTG 59.020 37.037 4.31 0.00 0.00 3.66
5515 11080 2.715536 AAGGCCACTTGGTTTCGTC 58.284 52.632 5.01 0.00 35.09 4.20
5541 11106 4.124970 AGTCAAACAGTTAAGGTTCGGTC 58.875 43.478 0.00 0.00 0.00 4.79
5562 11127 5.215160 GTCAAGTTTGCAGAAATGGTAGTG 58.785 41.667 0.00 0.00 0.00 2.74
5563 11128 5.008613 GTCAAGTTTGCAGAAATGGTAGTGA 59.991 40.000 0.00 0.00 0.00 3.41
5564 11129 5.008613 TCAAGTTTGCAGAAATGGTAGTGAC 59.991 40.000 0.00 0.00 0.00 3.67
5566 11131 5.072741 AGTTTGCAGAAATGGTAGTGACAT 58.927 37.500 0.00 0.00 0.00 3.06
5567 11132 5.536161 AGTTTGCAGAAATGGTAGTGACATT 59.464 36.000 0.00 0.00 40.07 2.71
5568 11133 5.375417 TTGCAGAAATGGTAGTGACATTG 57.625 39.130 0.00 0.00 38.47 2.82
5602 11170 9.428097 CCAAATCAATATCACTAGATCGATTCA 57.572 33.333 0.00 0.00 35.67 2.57
5682 12696 7.070183 GGAAAGTGTATTTTTCGTCTCTCAAC 58.930 38.462 0.00 0.00 35.81 3.18
5710 12724 5.445069 TCAAAGAGAAATGGTCCTTCAACA 58.555 37.500 0.00 0.00 0.00 3.33
5720 12734 4.547671 TGGTCCTTCAACATTAAAACCCA 58.452 39.130 0.00 0.00 0.00 4.51
5721 12735 4.586841 TGGTCCTTCAACATTAAAACCCAG 59.413 41.667 0.00 0.00 0.00 4.45
5727 12741 8.490311 TCCTTCAACATTAAAACCCAGAAATTT 58.510 29.630 0.00 0.00 0.00 1.82
5734 12748 8.271458 ACATTAAAACCCAGAAATTTTGGTCTT 58.729 29.630 14.39 8.21 33.73 3.01
5737 12751 5.948742 AACCCAGAAATTTTGGTCTTTCA 57.051 34.783 14.39 0.00 34.52 2.69
5738 12752 5.948742 ACCCAGAAATTTTGGTCTTTCAA 57.051 34.783 14.39 0.00 34.52 2.69
5766 12780 5.548181 AAAATCGGATAAGTCTACTCCCC 57.452 43.478 0.00 0.00 0.00 4.81
5808 12822 1.132262 CACATATGTTTGACCGCCCAC 59.868 52.381 5.37 0.00 0.00 4.61
5880 12894 0.935898 GCAGCTGGATCGATTCACAG 59.064 55.000 17.12 11.26 0.00 3.66
5902 12916 5.047660 CAGGGAGGTTAGCTAAGCTATAGTG 60.048 48.000 32.23 23.07 43.36 2.74
5905 12919 3.890147 AGGTTAGCTAAGCTATAGTGCGT 59.110 43.478 31.46 9.10 41.01 5.24
5907 12921 5.048852 AGGTTAGCTAAGCTATAGTGCGTAC 60.049 44.000 31.46 5.25 41.01 3.67
5918 12934 7.091443 AGCTATAGTGCGTACTAAATGGATTC 58.909 38.462 17.46 2.16 42.37 2.52
5919 12935 6.033619 GCTATAGTGCGTACTAAATGGATTCG 59.966 42.308 17.46 0.00 42.37 3.34
5920 12936 4.380841 AGTGCGTACTAAATGGATTCGA 57.619 40.909 3.62 0.00 34.74 3.71
5921 12937 4.945246 AGTGCGTACTAAATGGATTCGAT 58.055 39.130 3.62 0.00 34.74 3.59
5922 12938 4.745125 AGTGCGTACTAAATGGATTCGATG 59.255 41.667 3.62 0.00 34.74 3.84
5923 12939 4.506654 GTGCGTACTAAATGGATTCGATGT 59.493 41.667 0.00 0.00 0.00 3.06
5924 12940 4.743151 TGCGTACTAAATGGATTCGATGTC 59.257 41.667 0.00 0.00 0.00 3.06
5925 12941 4.150098 GCGTACTAAATGGATTCGATGTCC 59.850 45.833 9.76 9.76 36.26 4.02
5926 12942 5.529791 CGTACTAAATGGATTCGATGTCCT 58.470 41.667 15.82 2.15 36.68 3.85
5927 12943 5.983720 CGTACTAAATGGATTCGATGTCCTT 59.016 40.000 15.82 8.78 36.68 3.36
5928 12944 6.074302 CGTACTAAATGGATTCGATGTCCTTG 60.074 42.308 15.82 4.22 36.68 3.61
5929 12945 5.989477 ACTAAATGGATTCGATGTCCTTGA 58.011 37.500 15.82 0.14 36.68 3.02
5930 12946 6.051717 ACTAAATGGATTCGATGTCCTTGAG 58.948 40.000 15.82 12.29 36.68 3.02
5931 12947 2.315925 TGGATTCGATGTCCTTGAGC 57.684 50.000 15.82 0.00 36.68 4.26
5932 12948 1.554617 TGGATTCGATGTCCTTGAGCA 59.445 47.619 15.82 0.00 36.68 4.26
5933 12949 1.936547 GGATTCGATGTCCTTGAGCAC 59.063 52.381 9.48 0.00 32.85 4.40
5934 12950 1.936547 GATTCGATGTCCTTGAGCACC 59.063 52.381 0.00 0.00 0.00 5.01
5935 12951 0.976641 TTCGATGTCCTTGAGCACCT 59.023 50.000 0.00 0.00 0.00 4.00
5936 12952 0.532573 TCGATGTCCTTGAGCACCTC 59.467 55.000 0.00 0.00 0.00 3.85
5937 12953 0.803768 CGATGTCCTTGAGCACCTCG 60.804 60.000 0.00 0.00 32.35 4.63
5938 12954 0.532573 GATGTCCTTGAGCACCTCGA 59.467 55.000 0.00 0.00 32.35 4.04
5939 12955 0.247736 ATGTCCTTGAGCACCTCGAC 59.752 55.000 0.00 0.00 32.35 4.20
5940 12956 1.444553 GTCCTTGAGCACCTCGACG 60.445 63.158 0.00 0.00 32.35 5.12
5941 12957 1.602605 TCCTTGAGCACCTCGACGA 60.603 57.895 0.00 0.00 32.35 4.20
5942 12958 0.965866 TCCTTGAGCACCTCGACGAT 60.966 55.000 0.00 0.00 32.35 3.73
5943 12959 0.803768 CCTTGAGCACCTCGACGATG 60.804 60.000 0.00 0.00 32.35 3.84
5944 12960 0.803768 CTTGAGCACCTCGACGATGG 60.804 60.000 0.00 4.90 32.35 3.51
5945 12961 2.105128 GAGCACCTCGACGATGGG 59.895 66.667 14.96 7.95 0.00 4.00
5946 12962 3.432051 GAGCACCTCGACGATGGGG 62.432 68.421 14.96 12.70 0.00 4.96
5947 12963 3.458163 GCACCTCGACGATGGGGA 61.458 66.667 16.66 0.00 0.00 4.81
5948 12964 2.808315 CACCTCGACGATGGGGAG 59.192 66.667 8.48 0.00 0.00 4.30
5951 12967 3.121019 CTCGACGATGGGGAGGAC 58.879 66.667 0.00 0.00 0.00 3.85
5952 12968 2.827190 TCGACGATGGGGAGGACG 60.827 66.667 0.00 0.00 0.00 4.79
5953 12969 3.900892 CGACGATGGGGAGGACGG 61.901 72.222 0.00 0.00 0.00 4.79
5954 12970 2.441532 GACGATGGGGAGGACGGA 60.442 66.667 0.00 0.00 0.00 4.69
5955 12971 2.442272 ACGATGGGGAGGACGGAG 60.442 66.667 0.00 0.00 0.00 4.63
5956 12972 2.123854 CGATGGGGAGGACGGAGA 60.124 66.667 0.00 0.00 0.00 3.71
5957 12973 2.491022 CGATGGGGAGGACGGAGAC 61.491 68.421 0.00 0.00 0.00 3.36
5958 12974 1.381327 GATGGGGAGGACGGAGACA 60.381 63.158 0.00 0.00 0.00 3.41
5959 12975 1.381872 ATGGGGAGGACGGAGACAG 60.382 63.158 0.00 0.00 0.00 3.51
5960 12976 1.875422 ATGGGGAGGACGGAGACAGA 61.875 60.000 0.00 0.00 0.00 3.41
5961 12977 1.755008 GGGGAGGACGGAGACAGAG 60.755 68.421 0.00 0.00 0.00 3.35
5962 12978 1.000646 GGGAGGACGGAGACAGAGT 60.001 63.158 0.00 0.00 0.00 3.24
5963 12979 1.316706 GGGAGGACGGAGACAGAGTG 61.317 65.000 0.00 0.00 0.00 3.51
5964 12980 1.509004 GAGGACGGAGACAGAGTGC 59.491 63.158 0.00 0.00 0.00 4.40
5965 12981 1.939769 GAGGACGGAGACAGAGTGCC 61.940 65.000 0.00 0.00 0.00 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 7.925043 TCACCAAAACTCACTAGTACAAAAA 57.075 32.000 0.00 0.00 33.75 1.94
10 11 7.608761 AGTTCACCAAAACTCACTAGTACAAAA 59.391 33.333 0.00 0.00 34.37 2.44
11 12 7.065324 CAGTTCACCAAAACTCACTAGTACAAA 59.935 37.037 0.00 0.00 37.38 2.83
12 13 6.537301 CAGTTCACCAAAACTCACTAGTACAA 59.463 38.462 0.00 0.00 37.38 2.41
13 14 6.046593 CAGTTCACCAAAACTCACTAGTACA 58.953 40.000 0.00 0.00 37.38 2.90
14 15 6.018994 CACAGTTCACCAAAACTCACTAGTAC 60.019 42.308 0.00 0.00 37.38 2.73
15 16 6.046593 CACAGTTCACCAAAACTCACTAGTA 58.953 40.000 0.00 0.00 37.38 1.82
16 17 4.876107 CACAGTTCACCAAAACTCACTAGT 59.124 41.667 0.00 0.00 37.38 2.57
17 18 4.273480 CCACAGTTCACCAAAACTCACTAG 59.727 45.833 0.00 0.00 37.38 2.57
18 19 4.196193 CCACAGTTCACCAAAACTCACTA 58.804 43.478 0.00 0.00 37.38 2.74
19 20 3.016736 CCACAGTTCACCAAAACTCACT 58.983 45.455 0.00 0.00 37.38 3.41
20 21 2.752903 ACCACAGTTCACCAAAACTCAC 59.247 45.455 0.00 0.00 37.38 3.51
21 22 3.080300 ACCACAGTTCACCAAAACTCA 57.920 42.857 0.00 0.00 37.38 3.41
22 23 3.003378 GCTACCACAGTTCACCAAAACTC 59.997 47.826 0.00 0.00 37.38 3.01
23 24 2.949644 GCTACCACAGTTCACCAAAACT 59.050 45.455 0.00 0.00 40.08 2.66
24 25 2.949644 AGCTACCACAGTTCACCAAAAC 59.050 45.455 0.00 0.00 0.00 2.43
25 26 3.290948 AGCTACCACAGTTCACCAAAA 57.709 42.857 0.00 0.00 0.00 2.44
26 27 3.244422 CCTAGCTACCACAGTTCACCAAA 60.244 47.826 0.00 0.00 0.00 3.28
27 28 2.301870 CCTAGCTACCACAGTTCACCAA 59.698 50.000 0.00 0.00 0.00 3.67
28 29 1.899814 CCTAGCTACCACAGTTCACCA 59.100 52.381 0.00 0.00 0.00 4.17
29 30 1.405661 GCCTAGCTACCACAGTTCACC 60.406 57.143 0.00 0.00 0.00 4.02
30 31 1.405661 GGCCTAGCTACCACAGTTCAC 60.406 57.143 0.00 0.00 0.00 3.18
31 32 0.902531 GGCCTAGCTACCACAGTTCA 59.097 55.000 0.00 0.00 0.00 3.18
32 33 0.179108 CGGCCTAGCTACCACAGTTC 60.179 60.000 0.00 0.00 0.00 3.01
33 34 0.903454 ACGGCCTAGCTACCACAGTT 60.903 55.000 0.00 0.00 0.00 3.16
34 35 1.305046 ACGGCCTAGCTACCACAGT 60.305 57.895 0.00 0.00 0.00 3.55
35 36 1.320344 TGACGGCCTAGCTACCACAG 61.320 60.000 0.00 0.00 0.00 3.66
36 37 1.304630 TGACGGCCTAGCTACCACA 60.305 57.895 0.00 0.00 0.00 4.17
37 38 1.437986 CTGACGGCCTAGCTACCAC 59.562 63.158 0.00 0.00 0.00 4.16
38 39 1.756950 CCTGACGGCCTAGCTACCA 60.757 63.158 0.00 0.00 0.00 3.25
39 40 3.130227 CCTGACGGCCTAGCTACC 58.870 66.667 0.00 0.00 0.00 3.18
73 74 6.673748 TTCATATATGATCCAGGCACCGCC 62.674 50.000 16.06 0.00 42.21 6.13
74 75 2.093500 TCATATATGATCCAGGCACCGC 60.093 50.000 11.49 0.00 0.00 5.68
75 76 3.893326 TCATATATGATCCAGGCACCG 57.107 47.619 11.49 0.00 0.00 4.94
76 77 5.426689 TCTTCATATATGATCCAGGCACC 57.573 43.478 16.06 0.00 36.56 5.01
77 78 6.712095 TGTTTCTTCATATATGATCCAGGCAC 59.288 38.462 16.06 10.76 36.56 5.01
78 79 6.840527 TGTTTCTTCATATATGATCCAGGCA 58.159 36.000 16.06 8.72 36.56 4.75
79 80 7.934855 ATGTTTCTTCATATATGATCCAGGC 57.065 36.000 16.06 6.52 36.56 4.85
83 84 9.606631 GGGAGTATGTTTCTTCATATATGATCC 57.393 37.037 16.06 14.24 36.56 3.36
86 87 8.816894 GGAGGGAGTATGTTTCTTCATATATGA 58.183 37.037 11.49 11.49 33.68 2.15
87 88 7.761704 CGGAGGGAGTATGTTTCTTCATATATG 59.238 40.741 6.36 6.36 33.68 1.78
88 89 7.455008 ACGGAGGGAGTATGTTTCTTCATATAT 59.545 37.037 0.00 0.00 33.68 0.86
89 90 6.781014 ACGGAGGGAGTATGTTTCTTCATATA 59.219 38.462 0.00 0.00 33.68 0.86
90 91 5.602978 ACGGAGGGAGTATGTTTCTTCATAT 59.397 40.000 0.00 0.00 33.68 1.78
91 92 4.960469 ACGGAGGGAGTATGTTTCTTCATA 59.040 41.667 0.00 0.00 0.00 2.15
92 93 3.775316 ACGGAGGGAGTATGTTTCTTCAT 59.225 43.478 0.00 0.00 0.00 2.57
93 94 3.170717 ACGGAGGGAGTATGTTTCTTCA 58.829 45.455 0.00 0.00 0.00 3.02
94 95 3.889520 ACGGAGGGAGTATGTTTCTTC 57.110 47.619 0.00 0.00 0.00 2.87
95 96 4.960469 TGATACGGAGGGAGTATGTTTCTT 59.040 41.667 0.00 0.00 35.19 2.52
96 97 4.543689 TGATACGGAGGGAGTATGTTTCT 58.456 43.478 0.00 0.00 35.19 2.52
97 98 4.931661 TGATACGGAGGGAGTATGTTTC 57.068 45.455 0.00 0.00 35.19 2.78
98 99 5.687166 TTTGATACGGAGGGAGTATGTTT 57.313 39.130 0.00 0.00 35.19 2.83
99 100 5.687166 TTTTGATACGGAGGGAGTATGTT 57.313 39.130 0.00 0.00 35.19 2.71
100 101 5.888982 ATTTTGATACGGAGGGAGTATGT 57.111 39.130 0.00 0.00 35.19 2.29
101 102 6.994221 AGTATTTTGATACGGAGGGAGTATG 58.006 40.000 0.00 0.00 35.19 2.39
102 103 7.613551 AAGTATTTTGATACGGAGGGAGTAT 57.386 36.000 0.00 0.00 37.49 2.12
103 104 8.716674 ATAAGTATTTTGATACGGAGGGAGTA 57.283 34.615 0.00 0.00 32.52 2.59
104 105 5.952347 AAGTATTTTGATACGGAGGGAGT 57.048 39.130 0.00 0.00 32.52 3.85
105 106 7.667557 TGATAAGTATTTTGATACGGAGGGAG 58.332 38.462 0.00 0.00 32.52 4.30
106 107 7.606135 TGATAAGTATTTTGATACGGAGGGA 57.394 36.000 0.00 0.00 32.52 4.20
107 108 8.094548 TGATGATAAGTATTTTGATACGGAGGG 58.905 37.037 0.00 0.00 32.52 4.30
108 109 9.489084 TTGATGATAAGTATTTTGATACGGAGG 57.511 33.333 0.00 0.00 32.52 4.30
191 192 8.739039 TCGGAAATACTTGTCATCAAAATGAAT 58.261 29.630 0.00 0.00 43.42 2.57
192 193 8.105097 TCGGAAATACTTGTCATCAAAATGAA 57.895 30.769 0.00 0.00 43.42 2.57
193 194 7.680442 TCGGAAATACTTGTCATCAAAATGA 57.320 32.000 0.00 0.00 39.63 2.57
194 195 8.800972 CATTCGGAAATACTTGTCATCAAAATG 58.199 33.333 0.00 0.00 32.87 2.32
195 196 7.975616 CCATTCGGAAATACTTGTCATCAAAAT 59.024 33.333 0.00 0.00 32.87 1.82
196 197 7.175816 TCCATTCGGAAATACTTGTCATCAAAA 59.824 33.333 0.00 0.00 38.83 2.44
197 198 6.657117 TCCATTCGGAAATACTTGTCATCAAA 59.343 34.615 0.00 0.00 38.83 2.69
198 199 6.176896 TCCATTCGGAAATACTTGTCATCAA 58.823 36.000 0.00 0.00 38.83 2.57
199 200 5.739959 TCCATTCGGAAATACTTGTCATCA 58.260 37.500 0.00 0.00 38.83 3.07
200 201 5.237344 CCTCCATTCGGAAATACTTGTCATC 59.763 44.000 0.00 0.00 42.21 2.92
201 202 5.126067 CCTCCATTCGGAAATACTTGTCAT 58.874 41.667 0.00 0.00 42.21 3.06
202 203 4.513442 CCTCCATTCGGAAATACTTGTCA 58.487 43.478 0.00 0.00 42.21 3.58
203 204 3.877508 CCCTCCATTCGGAAATACTTGTC 59.122 47.826 0.00 0.00 42.21 3.18
204 205 3.521937 TCCCTCCATTCGGAAATACTTGT 59.478 43.478 0.00 0.00 42.21 3.16
205 206 4.130118 CTCCCTCCATTCGGAAATACTTG 58.870 47.826 0.00 0.00 42.21 3.16
206 207 3.780850 ACTCCCTCCATTCGGAAATACTT 59.219 43.478 0.00 0.00 42.21 2.24
207 208 3.385115 ACTCCCTCCATTCGGAAATACT 58.615 45.455 0.00 0.00 42.21 2.12
208 209 3.840124 ACTCCCTCCATTCGGAAATAC 57.160 47.619 0.00 0.00 42.21 1.89
209 210 4.553678 ACTACTCCCTCCATTCGGAAATA 58.446 43.478 0.00 0.00 42.21 1.40
210 211 3.385115 ACTACTCCCTCCATTCGGAAAT 58.615 45.455 0.00 0.00 42.21 2.17
211 212 2.829023 ACTACTCCCTCCATTCGGAAA 58.171 47.619 0.00 0.00 42.21 3.13
212 213 2.544844 ACTACTCCCTCCATTCGGAA 57.455 50.000 0.00 0.00 42.21 4.30
213 214 3.897657 ATACTACTCCCTCCATTCGGA 57.102 47.619 0.00 0.00 39.79 4.55
214 215 6.321690 CCTAATATACTACTCCCTCCATTCGG 59.678 46.154 0.00 0.00 0.00 4.30
215 216 7.117397 TCCTAATATACTACTCCCTCCATTCG 58.883 42.308 0.00 0.00 0.00 3.34
216 217 8.919145 CATCCTAATATACTACTCCCTCCATTC 58.081 40.741 0.00 0.00 0.00 2.67
217 218 7.846823 CCATCCTAATATACTACTCCCTCCATT 59.153 40.741 0.00 0.00 0.00 3.16
218 219 7.188454 TCCATCCTAATATACTACTCCCTCCAT 59.812 40.741 0.00 0.00 0.00 3.41
219 220 6.511445 TCCATCCTAATATACTACTCCCTCCA 59.489 42.308 0.00 0.00 0.00 3.86
220 221 6.982899 TCCATCCTAATATACTACTCCCTCC 58.017 44.000 0.00 0.00 0.00 4.30
221 222 8.919145 CATTCCATCCTAATATACTACTCCCTC 58.081 40.741 0.00 0.00 0.00 4.30
222 223 8.633724 TCATTCCATCCTAATATACTACTCCCT 58.366 37.037 0.00 0.00 0.00 4.20
223 224 8.840200 TCATTCCATCCTAATATACTACTCCC 57.160 38.462 0.00 0.00 0.00 4.30
237 238 9.927081 AAAAGTATATTGTCTTCATTCCATCCT 57.073 29.630 0.00 0.00 0.00 3.24
295 299 6.589523 CGTCTTATCATGATCCAGAAAGATCC 59.410 42.308 12.53 4.02 41.73 3.36
303 307 5.836347 TGACTTCGTCTTATCATGATCCAG 58.164 41.667 12.53 9.82 33.15 3.86
304 308 5.852282 TGACTTCGTCTTATCATGATCCA 57.148 39.130 12.53 0.00 33.15 3.41
332 337 3.484886 GCTTGCTTGTCATCGACATCTTC 60.485 47.826 0.00 0.00 42.40 2.87
333 338 2.417933 GCTTGCTTGTCATCGACATCTT 59.582 45.455 0.00 0.00 42.40 2.40
375 380 5.163794 GCAATGCGCCTTTACTTTTCTACTA 60.164 40.000 4.18 0.00 32.94 1.82
515 2281 6.346040 GCATTTATATGTCAACGGTACCGTAC 60.346 42.308 38.27 31.65 41.77 3.67
516 2282 5.691305 GCATTTATATGTCAACGGTACCGTA 59.309 40.000 38.27 24.18 41.77 4.02
517 2283 4.508861 GCATTTATATGTCAACGGTACCGT 59.491 41.667 33.77 33.77 43.14 4.83
518 2284 4.508492 TGCATTTATATGTCAACGGTACCG 59.492 41.667 32.22 32.22 38.52 4.02
519 2285 5.994887 TGCATTTATATGTCAACGGTACC 57.005 39.130 0.16 0.16 34.12 3.34
569 2335 3.934457 TTTTCTTCGAAATGGAAGGCC 57.066 42.857 0.00 0.00 42.88 5.19
587 2353 3.633361 CCACTCGGCTCCTCTTTTT 57.367 52.632 0.00 0.00 0.00 1.94
723 2521 8.667463 TGCCCAAGTTCGTTAAGTTATTATTAC 58.333 33.333 0.00 0.00 0.00 1.89
724 2522 8.667463 GTGCCCAAGTTCGTTAAGTTATTATTA 58.333 33.333 0.00 0.00 0.00 0.98
725 2523 7.392393 AGTGCCCAAGTTCGTTAAGTTATTATT 59.608 33.333 0.00 0.00 0.00 1.40
726 2524 6.882678 AGTGCCCAAGTTCGTTAAGTTATTAT 59.117 34.615 0.00 0.00 0.00 1.28
727 2525 6.232692 AGTGCCCAAGTTCGTTAAGTTATTA 58.767 36.000 0.00 0.00 0.00 0.98
729 2527 4.648651 AGTGCCCAAGTTCGTTAAGTTAT 58.351 39.130 0.00 0.00 0.00 1.89
739 2537 0.668535 GACCACAAGTGCCCAAGTTC 59.331 55.000 0.00 0.00 0.00 3.01
793 2595 7.650903 TCGAGTAAAACCTTCAGAAAGTCTTAC 59.349 37.037 1.23 1.23 0.00 2.34
862 3073 2.297033 GCATTTGGGTGCTGAAAGAGAA 59.703 45.455 0.00 0.00 41.82 2.87
955 3198 7.966753 ACAGAAGATTTGATTGATTGATTCGTG 59.033 33.333 0.00 0.00 0.00 4.35
958 3201 9.007252 CGAACAGAAGATTTGATTGATTGATTC 57.993 33.333 0.00 0.00 0.00 2.52
1121 3373 6.254157 CACAATTGTATGCACATAGGAAAAGC 59.746 38.462 11.53 0.00 33.76 3.51
1174 3432 6.573434 ACTCGATGAGATAAAACTATGTGCA 58.427 36.000 0.00 0.00 33.32 4.57
1244 3502 6.183360 CCCTAATAAACAAAAATGCATGCACC 60.183 38.462 25.37 0.00 0.00 5.01
1270 3528 7.559590 ACAGAAGAAAAGATGGCATACATAC 57.440 36.000 0.00 0.00 40.72 2.39
1271 3529 8.049117 AGAACAGAAGAAAAGATGGCATACATA 58.951 33.333 0.00 0.00 40.72 2.29
1272 3530 6.888632 AGAACAGAAGAAAAGATGGCATACAT 59.111 34.615 0.00 0.00 44.18 2.29
1273 3531 6.240894 AGAACAGAAGAAAAGATGGCATACA 58.759 36.000 0.00 0.00 0.00 2.29
1274 3532 6.749923 AGAACAGAAGAAAAGATGGCATAC 57.250 37.500 0.00 0.00 0.00 2.39
1276 3534 5.771666 TCAAGAACAGAAGAAAAGATGGCAT 59.228 36.000 0.00 0.00 0.00 4.40
1278 3536 5.009010 TGTCAAGAACAGAAGAAAAGATGGC 59.991 40.000 0.00 0.00 32.81 4.40
1279 3537 6.261826 AGTGTCAAGAACAGAAGAAAAGATGG 59.738 38.462 0.00 0.00 38.97 3.51
1280 3538 7.130917 CAGTGTCAAGAACAGAAGAAAAGATG 58.869 38.462 0.00 0.00 38.97 2.90
1281 3539 6.261826 CCAGTGTCAAGAACAGAAGAAAAGAT 59.738 38.462 0.00 0.00 38.97 2.40
1282 3540 5.586243 CCAGTGTCAAGAACAGAAGAAAAGA 59.414 40.000 0.00 0.00 38.97 2.52
1283 3541 5.220931 CCCAGTGTCAAGAACAGAAGAAAAG 60.221 44.000 0.00 0.00 38.97 2.27
1286 3544 3.199946 ACCCAGTGTCAAGAACAGAAGAA 59.800 43.478 0.00 0.00 38.97 2.52
1288 3546 3.199880 ACCCAGTGTCAAGAACAGAAG 57.800 47.619 0.00 0.00 38.97 2.85
1291 3549 3.007940 TGGATACCCAGTGTCAAGAACAG 59.992 47.826 0.00 0.00 36.56 3.16
1305 3563 4.537135 ACGATGACATACATGGATACCC 57.463 45.455 0.00 0.00 39.56 3.69
1311 3569 7.601073 AGCATATTAACGATGACATACATGG 57.399 36.000 0.00 0.00 39.56 3.66
1316 3574 9.758651 AAGTGTAAGCATATTAACGATGACATA 57.241 29.630 0.00 0.00 0.00 2.29
1340 3765 5.915196 GGTGCAAGACTAAACAAAAGCTAAG 59.085 40.000 0.00 0.00 0.00 2.18
1357 3782 1.660560 GCATGGTGGCTAGGTGCAAG 61.661 60.000 0.00 0.00 45.15 4.01
1495 3928 3.766545 ACATATTGCACCTCCACTTGTT 58.233 40.909 0.00 0.00 0.00 2.83
1500 3933 4.882671 CAACTACATATTGCACCTCCAC 57.117 45.455 0.00 0.00 0.00 4.02
1532 3967 9.206870 AGAAATAATAATTGGCAAGTGTTGTTG 57.793 29.630 17.93 0.00 0.00 3.33
1533 3968 9.206870 CAGAAATAATAATTGGCAAGTGTTGTT 57.793 29.630 17.93 14.83 0.00 2.83
1557 3993 3.923017 ACCGATTGCTTTCTTTTCCAG 57.077 42.857 0.00 0.00 0.00 3.86
1569 4005 5.049267 TGACTACAAGGTAAAAACCGATTGC 60.049 40.000 0.00 0.00 34.28 3.56
1576 4012 6.128634 CGGAGTCATGACTACAAGGTAAAAAC 60.129 42.308 32.42 14.56 42.46 2.43
1587 4025 5.234543 GGCTTAAAATCGGAGTCATGACTAC 59.765 44.000 27.95 26.87 42.66 2.73
1633 4079 6.291849 CGGTTGAAATCGATGAAGTATGAGAC 60.292 42.308 0.00 0.00 0.00 3.36
1650 4096 7.979444 AGAAATTCATAGAACTCGGTTGAAA 57.021 32.000 0.00 0.00 30.81 2.69
1662 4108 7.618442 GCGTAATTCGACAAGAAATTCATAGA 58.382 34.615 0.00 0.00 42.91 1.98
1679 4125 2.159517 CCTGAGCAGTTTGGCGTAATTC 60.160 50.000 0.00 0.00 39.27 2.17
1686 4132 4.410743 GCGCCTGAGCAGTTTGGC 62.411 66.667 0.00 0.00 39.83 4.52
1730 4176 1.420138 AGATGGACAACTTGAACCCGT 59.580 47.619 0.00 0.00 0.00 5.28
1818 4267 3.401182 TGCCATGACTTTTTGCATTTCC 58.599 40.909 0.00 0.00 0.00 3.13
1826 4276 5.596845 ACGTACAATTTGCCATGACTTTTT 58.403 33.333 0.00 0.00 0.00 1.94
1831 4281 5.898630 AAAAACGTACAATTTGCCATGAC 57.101 34.783 0.00 0.00 0.00 3.06
1879 4329 7.007995 GCCGTGCTTGTAAACTAAATTTATCAC 59.992 37.037 0.00 0.00 35.23 3.06
1883 4333 6.315091 TGCCGTGCTTGTAAACTAAATTTA 57.685 33.333 0.00 0.00 0.00 1.40
1897 4347 0.811281 GCTAGGAAATTGCCGTGCTT 59.189 50.000 13.41 0.00 0.00 3.91
1919 4369 8.512138 CATGAGAAACCCGTCTAAGTTTATTTT 58.488 33.333 0.00 0.00 36.36 1.82
1936 4387 5.591643 TTTAGTTGACGAGCATGAGAAAC 57.408 39.130 0.00 0.00 0.00 2.78
1987 4438 5.747951 TGGCAAATCAAACATTTTTCACC 57.252 34.783 0.00 0.00 0.00 4.02
1988 4439 6.727215 ACATGGCAAATCAAACATTTTTCAC 58.273 32.000 0.00 0.00 0.00 3.18
2062 4513 8.821817 ACCCTATATTTTACCTGCAAAACAATT 58.178 29.630 0.00 0.00 30.57 2.32
2063 4514 8.374184 ACCCTATATTTTACCTGCAAAACAAT 57.626 30.769 0.00 0.00 30.57 2.71
2070 4521 9.127277 GTCAATTTACCCTATATTTTACCTGCA 57.873 33.333 0.00 0.00 0.00 4.41
2071 4522 8.287503 CGTCAATTTACCCTATATTTTACCTGC 58.712 37.037 0.00 0.00 0.00 4.85
2072 4523 9.333724 ACGTCAATTTACCCTATATTTTACCTG 57.666 33.333 0.00 0.00 0.00 4.00
2073 4524 9.333724 CACGTCAATTTACCCTATATTTTACCT 57.666 33.333 0.00 0.00 0.00 3.08
2142 4593 9.474920 CAGTGTTTGGTATAATTTGACACAAAT 57.525 29.630 6.51 4.22 38.60 2.32
2250 4761 7.604164 TCTCTAAAGCTAACAATCTTGAACCAG 59.396 37.037 0.00 0.00 0.00 4.00
2402 5071 6.475402 GGGTAAAAGACACTCAACATGTTTTG 59.525 38.462 8.77 9.03 0.00 2.44
2432 5102 9.653287 CCAAATAGATAGAAACTGTGAAGTACA 57.347 33.333 0.00 0.00 37.78 2.90
2439 5109 8.665685 GTTACCACCAAATAGATAGAAACTGTG 58.334 37.037 0.00 0.00 0.00 3.66
2441 5111 8.209917 GGTTACCACCAAATAGATAGAAACTG 57.790 38.462 0.00 0.00 43.61 3.16
2719 5777 6.829298 TGGTTAAACTTCACAAAGTATGACCA 59.171 34.615 11.99 11.99 45.07 4.02
2721 5779 6.849305 CGTGGTTAAACTTCACAAAGTATGAC 59.151 38.462 0.00 0.00 45.07 3.06
2758 5817 4.382831 CACGACGAATGTGTGTTGTTATC 58.617 43.478 0.00 0.00 30.29 1.75
2768 5827 8.119845 TGAAAATATATTTCCACGACGAATGTG 58.880 33.333 11.08 0.00 37.09 3.21
2769 5828 8.203937 TGAAAATATATTTCCACGACGAATGT 57.796 30.769 11.08 0.00 0.00 2.71
2921 6000 9.083080 CGAAAATTAAATTGTACCCCTTCATTC 57.917 33.333 0.00 0.00 0.00 2.67
2924 6003 6.071278 CCCGAAAATTAAATTGTACCCCTTCA 60.071 38.462 0.00 0.00 0.00 3.02
2925 6005 6.071221 ACCCGAAAATTAAATTGTACCCCTTC 60.071 38.462 0.00 0.00 0.00 3.46
3048 6128 0.246635 AGCGGTAGGTGTAGTTGCTG 59.753 55.000 0.00 0.00 0.00 4.41
3049 6129 0.974383 AAGCGGTAGGTGTAGTTGCT 59.026 50.000 0.00 0.00 0.00 3.91
3094 6174 2.753043 GTGGGCATGCCACCAGAG 60.753 66.667 36.56 0.00 37.45 3.35
3096 6176 2.283388 AAGTGGGCATGCCACCAG 60.283 61.111 36.56 0.00 37.45 4.00
3204 6284 1.694150 TCCCCGAACATGATGATCTCC 59.306 52.381 0.00 0.00 0.00 3.71
3246 6326 2.789917 GCCATCTGCTGCAAGTCG 59.210 61.111 3.02 0.00 36.87 4.18
3267 6347 1.299976 GGCAGGAATTCCGGTGAGT 59.700 57.895 23.25 1.19 42.08 3.41
3376 6456 6.526674 CCACAAATTAAGAACAATCTTACGCC 59.473 38.462 0.00 0.00 45.52 5.68
3398 6488 8.784043 AGAACTTTCATTTACTACATCAACCAC 58.216 33.333 0.00 0.00 0.00 4.16
3426 6516 2.770164 AATCTGACTCGGGACAAAGG 57.230 50.000 0.00 0.00 0.00 3.11
3545 6834 6.224584 ACTCTAGGCTTGTTCTAAGTCAAAC 58.775 40.000 0.00 0.00 0.00 2.93
3561 6850 7.042658 CCGTTCTAAATTGATGTAACTCTAGGC 60.043 40.741 0.00 0.00 0.00 3.93
3563 6852 9.582431 TTCCGTTCTAAATTGATGTAACTCTAG 57.418 33.333 0.00 0.00 0.00 2.43
3568 6857 6.183360 CCCCTTCCGTTCTAAATTGATGTAAC 60.183 42.308 0.00 0.00 0.00 2.50
3571 6860 4.263771 ACCCCTTCCGTTCTAAATTGATGT 60.264 41.667 0.00 0.00 0.00 3.06
3572 6861 4.096382 CACCCCTTCCGTTCTAAATTGATG 59.904 45.833 0.00 0.00 0.00 3.07
3575 6864 2.163613 GCACCCCTTCCGTTCTAAATTG 59.836 50.000 0.00 0.00 0.00 2.32
3599 6888 5.007528 ACGCAAACCCAAAATTCATCAAAAG 59.992 36.000 0.00 0.00 0.00 2.27
3649 6938 1.199558 GCAGGTACGTCTCGTTCTTCT 59.800 52.381 0.00 0.00 41.54 2.85
3835 9369 0.671796 CATGTAGTATCGCCCGACCA 59.328 55.000 0.00 0.00 0.00 4.02
3836 9370 0.038526 CCATGTAGTATCGCCCGACC 60.039 60.000 0.00 0.00 0.00 4.79
3845 9379 0.314302 GAGACGCCGCCATGTAGTAT 59.686 55.000 0.00 0.00 0.00 2.12
3869 9403 1.612676 CCGACGGTATCCCACTATCA 58.387 55.000 5.48 0.00 0.00 2.15
3968 9502 1.070786 GAACTCCGGCAACTGTGGA 59.929 57.895 0.00 0.00 0.00 4.02
4004 9545 0.036875 GGTTGGAGAGGAACCTGTGG 59.963 60.000 0.00 0.00 39.94 4.17
4032 9573 4.659172 CTTGCCGGGGAGCACCAA 62.659 66.667 2.18 0.00 43.97 3.67
4244 9785 2.183555 GGGAAGTCGCGGGTGTAG 59.816 66.667 6.13 0.00 0.00 2.74
4328 9869 0.818040 GCACCTTGGTCGACTTGGTT 60.818 55.000 16.46 3.98 0.00 3.67
4495 10036 1.068541 GGTTGACGAGGTTGAATTGCC 60.069 52.381 0.00 0.00 0.00 4.52
4608 10151 6.655376 ACGGAGGGAGTAGTAGGAATATAT 57.345 41.667 0.00 0.00 0.00 0.86
4609 10152 6.044754 TGAACGGAGGGAGTAGTAGGAATATA 59.955 42.308 0.00 0.00 0.00 0.86
4632 10179 9.528489 AATGTCTTTAAGGCCTTATAAAAGTGA 57.472 29.630 27.15 19.22 0.00 3.41
4637 10184 9.747898 TCTGAAATGTCTTTAAGGCCTTATAAA 57.252 29.630 25.70 18.15 0.00 1.40
4638 10185 9.174166 GTCTGAAATGTCTTTAAGGCCTTATAA 57.826 33.333 25.70 19.28 0.00 0.98
4641 10188 6.539173 TGTCTGAAATGTCTTTAAGGCCTTA 58.461 36.000 21.68 21.68 27.62 2.69
4642 10189 5.385198 TGTCTGAAATGTCTTTAAGGCCTT 58.615 37.500 24.18 24.18 27.62 4.35
4643 10190 4.985538 TGTCTGAAATGTCTTTAAGGCCT 58.014 39.130 0.00 0.00 27.62 5.19
4645 10192 6.583806 CACATTGTCTGAAATGTCTTTAAGGC 59.416 38.462 12.25 0.00 45.47 4.35
4647 10194 7.140705 TGCACATTGTCTGAAATGTCTTTAAG 58.859 34.615 12.25 0.00 45.47 1.85
4648 10195 7.036996 TGCACATTGTCTGAAATGTCTTTAA 57.963 32.000 12.25 0.00 45.47 1.52
4652 10199 5.518848 TTTGCACATTGTCTGAAATGTCT 57.481 34.783 12.25 0.00 45.47 3.41
4653 10200 5.519566 TGTTTTGCACATTGTCTGAAATGTC 59.480 36.000 12.25 9.51 45.47 3.06
4655 10202 5.557514 GCTGTTTTGCACATTGTCTGAAATG 60.558 40.000 0.00 9.50 42.21 2.32
4656 10203 4.508861 GCTGTTTTGCACATTGTCTGAAAT 59.491 37.500 0.00 0.00 33.76 2.17
4658 10205 3.446799 GCTGTTTTGCACATTGTCTGAA 58.553 40.909 0.00 0.00 33.76 3.02
4659 10206 2.223782 GGCTGTTTTGCACATTGTCTGA 60.224 45.455 0.00 0.00 33.76 3.27
4660 10207 2.129607 GGCTGTTTTGCACATTGTCTG 58.870 47.619 0.00 0.00 33.76 3.51
4662 10209 1.202510 TGGGCTGTTTTGCACATTGTC 60.203 47.619 0.00 0.00 41.96 3.18
4663 10210 0.829333 TGGGCTGTTTTGCACATTGT 59.171 45.000 0.00 0.00 41.96 2.71
4664 10211 3.682766 TGGGCTGTTTTGCACATTG 57.317 47.368 0.00 0.00 41.96 2.82
4668 10215 2.545106 CTGAAAATGGGCTGTTTTGCAC 59.455 45.455 5.39 0.00 36.79 4.57
4669 10216 2.836262 CTGAAAATGGGCTGTTTTGCA 58.164 42.857 5.39 0.00 34.04 4.08
4670 10217 1.532437 GCTGAAAATGGGCTGTTTTGC 59.468 47.619 5.39 1.55 0.00 3.68
4671 10218 2.803956 CAGCTGAAAATGGGCTGTTTTG 59.196 45.455 8.42 0.00 45.59 2.44
4687 10234 8.725148 ACTTTTATAAGTCATTTCAGACAGCTG 58.275 33.333 13.48 13.48 40.60 4.24
4688 10235 8.725148 CACTTTTATAAGTCATTTCAGACAGCT 58.275 33.333 0.00 0.00 42.67 4.24
4689 10236 8.721478 TCACTTTTATAAGTCATTTCAGACAGC 58.279 33.333 0.00 0.00 42.67 4.40
4692 10239 9.530129 CGTTCACTTTTATAAGTCATTTCAGAC 57.470 33.333 0.00 0.00 42.67 3.51
4693 10240 8.717821 CCGTTCACTTTTATAAGTCATTTCAGA 58.282 33.333 0.00 0.00 42.67 3.27
4696 10243 8.175716 CCTCCGTTCACTTTTATAAGTCATTTC 58.824 37.037 0.00 0.00 42.67 2.17
4698 10245 6.598064 CCCTCCGTTCACTTTTATAAGTCATT 59.402 38.462 0.00 0.00 42.67 2.57
4699 10246 6.070424 TCCCTCCGTTCACTTTTATAAGTCAT 60.070 38.462 0.00 0.00 42.67 3.06
4701 10248 5.727434 TCCCTCCGTTCACTTTTATAAGTC 58.273 41.667 0.00 0.00 42.67 3.01
4702 10249 5.247792 ACTCCCTCCGTTCACTTTTATAAGT 59.752 40.000 0.00 0.00 45.40 2.24
4703 10250 5.731591 ACTCCCTCCGTTCACTTTTATAAG 58.268 41.667 0.00 0.00 37.40 1.73
4704 10251 5.750352 ACTCCCTCCGTTCACTTTTATAA 57.250 39.130 0.00 0.00 0.00 0.98
4705 10252 5.954150 ACTACTCCCTCCGTTCACTTTTATA 59.046 40.000 0.00 0.00 0.00 0.98
4707 10254 4.154942 ACTACTCCCTCCGTTCACTTTTA 58.845 43.478 0.00 0.00 0.00 1.52
4708 10255 2.970640 ACTACTCCCTCCGTTCACTTTT 59.029 45.455 0.00 0.00 0.00 2.27
4710 10257 2.305858 ACTACTCCCTCCGTTCACTT 57.694 50.000 0.00 0.00 0.00 3.16
4711 10258 3.666345 ATACTACTCCCTCCGTTCACT 57.334 47.619 0.00 0.00 0.00 3.41
4713 10260 7.024345 TGATATATACTACTCCCTCCGTTCA 57.976 40.000 0.00 0.00 0.00 3.18
4715 10262 8.896722 AAATGATATATACTACTCCCTCCGTT 57.103 34.615 0.00 0.00 0.00 4.44
4716 10263 7.560626 GGAAATGATATATACTACTCCCTCCGT 59.439 40.741 0.00 0.00 0.00 4.69
4717 10264 7.780745 AGGAAATGATATATACTACTCCCTCCG 59.219 40.741 0.00 0.00 0.00 4.63
4718 10265 9.495382 AAGGAAATGATATATACTACTCCCTCC 57.505 37.037 0.00 0.00 0.00 4.30
4815 10364 5.421693 TCCCTGCAATTAACATACAAGCAAT 59.578 36.000 0.00 0.00 0.00 3.56
5000 10549 8.948631 TTTAGCTCCTCTTTATTCATGTACAG 57.051 34.615 0.33 0.00 0.00 2.74
5044 10607 7.341769 TGCAGAGCTATTAAAATACCAACCAAT 59.658 33.333 0.00 0.00 0.00 3.16
5094 10657 6.320926 CACCCATCACAATCATATTACAACCA 59.679 38.462 0.00 0.00 0.00 3.67
5116 10679 4.056050 ACGTAAGATGACAGACAAACACC 58.944 43.478 0.00 0.00 43.62 4.16
5250 10813 0.516877 GTGTGTATGTGTGCACGCAT 59.483 50.000 39.02 39.02 46.51 4.73
5251 10814 1.938125 GTGTGTATGTGTGCACGCA 59.062 52.632 33.16 33.16 46.51 5.24
5252 10815 1.154672 CGTGTGTATGTGTGCACGC 60.155 57.895 23.40 23.40 45.86 5.34
5254 10817 0.163788 GCTCGTGTGTATGTGTGCAC 59.836 55.000 10.75 10.75 40.83 4.57
5255 10818 0.033366 AGCTCGTGTGTATGTGTGCA 59.967 50.000 0.00 0.00 0.00 4.57
5256 10819 1.990799 TAGCTCGTGTGTATGTGTGC 58.009 50.000 0.00 0.00 0.00 4.57
5257 10820 3.608506 GTCTTAGCTCGTGTGTATGTGTG 59.391 47.826 0.00 0.00 0.00 3.82
5270 10833 4.995124 TCGGTTCTATGTTGTCTTAGCTC 58.005 43.478 0.00 0.00 0.00 4.09
5286 10849 1.016653 GGTGCTGCTCTTCTCGGTTC 61.017 60.000 0.00 0.00 0.00 3.62
5306 10869 5.645497 GCTTCATCTTAAGACCATGACTGTT 59.355 40.000 7.48 0.00 0.00 3.16
5309 10872 5.181748 GTGCTTCATCTTAAGACCATGACT 58.818 41.667 7.48 0.00 0.00 3.41
5323 10886 0.464554 GCCCTAGGTGGTGCTTCATC 60.465 60.000 8.29 0.00 0.00 2.92
5372 10935 3.545703 ACATTCCATCATCCTTCGGTTC 58.454 45.455 0.00 0.00 0.00 3.62
5398 10961 4.413087 GCTCAATTCTCAAGATGTTGCTG 58.587 43.478 0.00 0.00 33.23 4.41
5426 10989 3.434309 CCATCCTCCCAAACAGTTTGAT 58.566 45.455 25.08 9.10 43.26 2.57
5435 10998 1.753903 TGTTCTCCCATCCTCCCAAA 58.246 50.000 0.00 0.00 0.00 3.28
5444 11007 3.705051 ACATGCATTCTTGTTCTCCCAT 58.295 40.909 0.00 0.00 0.00 4.00
5456 11019 9.542462 TGAGGTAGTACTATTTTACATGCATTC 57.458 33.333 5.75 0.00 0.00 2.67
5483 11046 5.537300 AGTGGCCTTGTATAGATGTACAG 57.463 43.478 3.32 0.00 36.08 2.74
5484 11047 5.396324 CCAAGTGGCCTTGTATAGATGTACA 60.396 44.000 3.32 0.00 45.49 2.90
5485 11048 5.057149 CCAAGTGGCCTTGTATAGATGTAC 58.943 45.833 3.32 0.00 45.49 2.90
5515 11080 6.259387 ACCGAACCTTAACTGTTTGACTTAAG 59.741 38.462 0.00 0.00 30.09 1.85
5541 11106 5.215160 GTCACTACCATTTCTGCAAACTTG 58.785 41.667 0.00 0.00 0.00 3.16
5612 11180 9.337396 ACGATACCTAATAAATGCATTCTGAAA 57.663 29.630 13.38 0.00 0.00 2.69
5613 11181 8.902540 ACGATACCTAATAAATGCATTCTGAA 57.097 30.769 13.38 0.00 0.00 3.02
5670 12684 7.658261 TCTCTTTGAAATAGTTGAGAGACGAA 58.342 34.615 0.00 0.00 35.87 3.85
5704 12718 8.897752 CCAAAATTTCTGGGTTTTAATGTTGAA 58.102 29.630 10.04 0.00 30.31 2.69
5710 12724 9.337396 GAAAGACCAAAATTTCTGGGTTTTAAT 57.663 29.630 17.91 4.93 38.36 1.40
5727 12741 7.773149 TCCGATTTTAAAAGTTGAAAGACCAA 58.227 30.769 6.79 0.00 0.00 3.67
5738 12752 9.597170 GGAGTAGACTTATCCGATTTTAAAAGT 57.403 33.333 6.79 0.00 0.00 2.66
5748 12762 1.202855 CGGGGGAGTAGACTTATCCGA 60.203 57.143 10.84 0.00 35.47 4.55
5758 12772 0.981943 AGTCAAAACCGGGGGAGTAG 59.018 55.000 6.32 0.00 0.00 2.57
5761 12775 2.555325 GTTTTAGTCAAAACCGGGGGAG 59.445 50.000 6.32 0.00 45.15 4.30
5808 12822 0.751277 TGGCAGTCAAACCTGTGTGG 60.751 55.000 0.00 0.00 42.93 4.17
5863 12877 0.467384 CCCTGTGAATCGATCCAGCT 59.533 55.000 0.00 0.00 0.00 4.24
5880 12894 4.322123 GCACTATAGCTTAGCTAACCTCCC 60.322 50.000 18.34 2.25 44.62 4.30
5902 12916 4.150098 GGACATCGAATCCATTTAGTACGC 59.850 45.833 12.96 0.00 36.15 4.42
5905 12919 7.119709 TCAAGGACATCGAATCCATTTAGTA 57.880 36.000 18.51 0.00 38.86 1.82
5907 12921 5.049818 GCTCAAGGACATCGAATCCATTTAG 60.050 44.000 18.51 11.75 38.86 1.85
5918 12934 3.056628 GAGGTGCTCAAGGACATCG 57.943 57.895 4.02 0.00 37.43 3.84
5919 12935 0.532573 TCGAGGTGCTCAAGGACATC 59.467 55.000 6.29 6.29 42.40 3.06
5920 12936 0.247736 GTCGAGGTGCTCAAGGACAT 59.752 55.000 4.02 0.00 38.19 3.06
5921 12937 1.666011 GTCGAGGTGCTCAAGGACA 59.334 57.895 4.02 0.00 38.19 4.02
5922 12938 1.444553 CGTCGAGGTGCTCAAGGAC 60.445 63.158 0.00 0.00 35.50 3.85
5923 12939 0.965866 ATCGTCGAGGTGCTCAAGGA 60.966 55.000 4.85 0.00 0.00 3.36
5924 12940 0.803768 CATCGTCGAGGTGCTCAAGG 60.804 60.000 4.85 0.00 0.00 3.61
5925 12941 0.803768 CCATCGTCGAGGTGCTCAAG 60.804 60.000 6.12 0.00 0.00 3.02
5926 12942 1.215382 CCATCGTCGAGGTGCTCAA 59.785 57.895 6.12 0.00 0.00 3.02
5927 12943 2.710902 CCCATCGTCGAGGTGCTCA 61.711 63.158 6.12 0.00 0.00 4.26
5928 12944 2.105128 CCCATCGTCGAGGTGCTC 59.895 66.667 6.12 0.00 0.00 4.26
5929 12945 3.461773 CCCCATCGTCGAGGTGCT 61.462 66.667 6.12 0.00 0.00 4.40
5930 12946 3.432051 CTCCCCATCGTCGAGGTGC 62.432 68.421 6.12 0.00 0.00 5.01
5931 12947 2.786495 CCTCCCCATCGTCGAGGTG 61.786 68.421 6.12 0.00 38.72 4.00
5932 12948 2.442272 CCTCCCCATCGTCGAGGT 60.442 66.667 6.12 0.00 38.72 3.85
5933 12949 2.123854 TCCTCCCCATCGTCGAGG 60.124 66.667 0.00 0.00 43.92 4.63
5934 12950 2.835705 CGTCCTCCCCATCGTCGAG 61.836 68.421 0.00 0.00 0.00 4.04
5935 12951 2.827190 CGTCCTCCCCATCGTCGA 60.827 66.667 0.00 0.00 0.00 4.20
5936 12952 3.900892 CCGTCCTCCCCATCGTCG 61.901 72.222 0.00 0.00 0.00 5.12
5937 12953 2.441532 TCCGTCCTCCCCATCGTC 60.442 66.667 0.00 0.00 0.00 4.20
5938 12954 2.442272 CTCCGTCCTCCCCATCGT 60.442 66.667 0.00 0.00 0.00 3.73
5939 12955 2.123854 TCTCCGTCCTCCCCATCG 60.124 66.667 0.00 0.00 0.00 3.84
5940 12956 1.381327 TGTCTCCGTCCTCCCCATC 60.381 63.158 0.00 0.00 0.00 3.51
5941 12957 1.381872 CTGTCTCCGTCCTCCCCAT 60.382 63.158 0.00 0.00 0.00 4.00
5942 12958 2.037367 CTGTCTCCGTCCTCCCCA 59.963 66.667 0.00 0.00 0.00 4.96
5943 12959 1.755008 CTCTGTCTCCGTCCTCCCC 60.755 68.421 0.00 0.00 0.00 4.81
5944 12960 1.000646 ACTCTGTCTCCGTCCTCCC 60.001 63.158 0.00 0.00 0.00 4.30
5945 12961 1.939769 GCACTCTGTCTCCGTCCTCC 61.940 65.000 0.00 0.00 0.00 4.30
5946 12962 1.509004 GCACTCTGTCTCCGTCCTC 59.491 63.158 0.00 0.00 0.00 3.71
5947 12963 1.979693 GGCACTCTGTCTCCGTCCT 60.980 63.158 0.00 0.00 0.00 3.85
5948 12964 2.574399 GGCACTCTGTCTCCGTCC 59.426 66.667 0.00 0.00 0.00 4.79
5949 12965 2.179517 CGGCACTCTGTCTCCGTC 59.820 66.667 0.00 0.00 37.33 4.79
5950 12966 3.374402 CCGGCACTCTGTCTCCGT 61.374 66.667 0.00 0.00 40.23 4.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.