Multiple sequence alignment - TraesCS1A01G043800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G043800 chr1A 100.000 2354 0 0 1 2354 24330148 24332501 0.000000e+00 4348.0
1 TraesCS1A01G043800 chr1A 94.206 466 18 2 1 457 28930389 28930854 0.000000e+00 702.0
2 TraesCS1A01G043800 chr1A 91.772 158 8 3 580 732 540199533 540199690 5.100000e-52 215.0
3 TraesCS1A01G043800 chr1D 90.291 618 34 8 1757 2354 24061691 24062302 0.000000e+00 785.0
4 TraesCS1A01G043800 chr1D 90.678 472 23 7 986 1454 24054503 24054956 2.000000e-170 608.0
5 TraesCS1A01G043800 chr4A 94.850 466 15 2 1 457 605448956 605448491 0.000000e+00 719.0
6 TraesCS1A01G043800 chr4A 91.304 161 9 4 580 735 142956276 142956436 5.100000e-52 215.0
7 TraesCS1A01G043800 chr5A 94.635 466 16 2 1 457 350513574 350514039 0.000000e+00 713.0
8 TraesCS1A01G043800 chr7D 94.421 466 17 2 1 457 633612230 633612695 0.000000e+00 708.0
9 TraesCS1A01G043800 chr7D 90.741 162 9 4 580 735 51422651 51422812 6.590000e-51 211.0
10 TraesCS1A01G043800 chr7D 95.868 121 4 1 458 578 633612975 633613094 6.640000e-46 195.0
11 TraesCS1A01G043800 chr7D 95.082 122 5 1 458 579 14598101 14597981 8.590000e-45 191.0
12 TraesCS1A01G043800 chr7D 88.889 63 7 0 1171 1233 77426755 77426817 6.970000e-11 78.7
13 TraesCS1A01G043800 chr5D 94.206 466 18 2 1 457 231618284 231617819 0.000000e+00 702.0
14 TraesCS1A01G043800 chr5D 95.041 121 5 1 458 578 231617539 231617420 3.090000e-44 189.0
15 TraesCS1A01G043800 chr4D 94.206 466 18 2 1 457 499571910 499571445 0.000000e+00 702.0
16 TraesCS1A01G043800 chr4D 90.625 160 11 3 580 735 170026168 170026009 2.370000e-50 209.0
17 TraesCS1A01G043800 chr4D 95.868 121 4 1 458 578 499562440 499562321 6.640000e-46 195.0
18 TraesCS1A01G043800 chr3D 94.206 466 18 2 1 457 387159828 387160293 0.000000e+00 702.0
19 TraesCS1A01G043800 chr3D 93.777 466 19 3 1 457 1877203 1877667 0.000000e+00 691.0
20 TraesCS1A01G043800 chr3D 95.041 121 5 1 458 578 1877949 1878068 3.090000e-44 189.0
21 TraesCS1A01G043800 chr3D 95.041 121 5 1 458 578 387160573 387160692 3.090000e-44 189.0
22 TraesCS1A01G043800 chr3B 94.206 466 18 2 1 457 27855251 27854786 0.000000e+00 702.0
23 TraesCS1A01G043800 chr3B 95.041 121 5 1 458 578 27854506 27854387 3.090000e-44 189.0
24 TraesCS1A01G043800 chr1B 89.771 567 33 9 952 1513 39616236 39615690 0.000000e+00 702.0
25 TraesCS1A01G043800 chr1B 91.497 294 24 1 2062 2354 39601178 39600885 1.010000e-108 403.0
26 TraesCS1A01G043800 chr1B 82.789 337 33 7 1750 2067 39615659 39615329 6.410000e-71 278.0
27 TraesCS1A01G043800 chr1B 80.620 258 21 9 735 964 39617660 39617404 3.110000e-39 172.0
28 TraesCS1A01G043800 chr2D 91.304 161 9 3 580 735 155616604 155616764 5.100000e-52 215.0
29 TraesCS1A01G043800 chr2D 90.683 161 10 3 580 735 126046701 126046541 2.370000e-50 209.0
30 TraesCS1A01G043800 chr2D 90.291 103 5 4 1565 1666 643240478 643240380 1.900000e-26 130.0
31 TraesCS1A01G043800 chr2D 98.413 63 1 0 1678 1740 643236175 643236113 6.880000e-21 111.0
32 TraesCS1A01G043800 chr2A 91.250 160 9 4 581 735 522271419 522271260 1.830000e-51 213.0
33 TraesCS1A01G043800 chr6D 90.683 161 10 3 580 735 224251257 224251417 2.370000e-50 209.0
34 TraesCS1A01G043800 chr6D 90.683 161 10 4 580 735 340183204 340183364 2.370000e-50 209.0
35 TraesCS1A01G043800 chr7B 94.215 121 6 1 458 578 674985493 674985374 1.440000e-42 183.0
36 TraesCS1A01G043800 chr6B 94.215 121 6 1 458 578 415043996 415044115 1.440000e-42 183.0
37 TraesCS1A01G043800 chr7A 88.591 149 9 4 1600 1741 734996253 734996106 8.650000e-40 174.0
38 TraesCS1A01G043800 chr2B 88.043 92 8 1 1563 1654 16045268 16045356 3.200000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G043800 chr1A 24330148 24332501 2353 False 4348.0 4348 100.000000 1 2354 1 chr1A.!!$F1 2353
1 TraesCS1A01G043800 chr1D 24061691 24062302 611 False 785.0 785 90.291000 1757 2354 1 chr1D.!!$F2 597
2 TraesCS1A01G043800 chr7D 633612230 633613094 864 False 451.5 708 95.144500 1 578 2 chr7D.!!$F3 577
3 TraesCS1A01G043800 chr5D 231617420 231618284 864 True 445.5 702 94.623500 1 578 2 chr5D.!!$R1 577
4 TraesCS1A01G043800 chr3D 387159828 387160692 864 False 445.5 702 94.623500 1 578 2 chr3D.!!$F2 577
5 TraesCS1A01G043800 chr3D 1877203 1878068 865 False 440.0 691 94.409000 1 578 2 chr3D.!!$F1 577
6 TraesCS1A01G043800 chr3B 27854387 27855251 864 True 445.5 702 94.623500 1 578 2 chr3B.!!$R1 577
7 TraesCS1A01G043800 chr1B 39615329 39617660 2331 True 384.0 702 84.393333 735 2067 3 chr1B.!!$R2 1332

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
328 330 0.036164 TGCATGCGGTTCTTGGTAGT 59.964 50.0 14.09 0.0 0.0 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1526 3027 0.109723 TGTACAGTCCCTTGTTGCCC 59.89 55.0 0.0 0.0 32.56 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 79 4.525874 TGAGTGATCTCATTCCTCGCATAT 59.474 41.667 0.00 0.00 44.58 1.78
122 123 2.290960 GGGAAGCCAACCTCTGTACATT 60.291 50.000 0.00 0.00 0.00 2.71
185 187 3.525537 CATCACGCAGTCTTCTATGGTT 58.474 45.455 0.00 0.00 41.61 3.67
188 190 1.899814 ACGCAGTCTTCTATGGTTGGA 59.100 47.619 0.00 0.00 29.74 3.53
270 272 2.158769 GCATGATGTACATCCTCCACCA 60.159 50.000 28.64 12.58 37.07 4.17
328 330 0.036164 TGCATGCGGTTCTTGGTAGT 59.964 50.000 14.09 0.00 0.00 2.73
380 382 7.984391 CACTCCATGCAAATACATGTACTTTA 58.016 34.615 7.96 0.00 44.88 1.85
388 390 6.128007 GCAAATACATGTACTTTAGCTGGTGT 60.128 38.462 7.96 0.00 0.00 4.16
448 458 2.052157 GAATACTCGACGCACCATAGC 58.948 52.381 0.00 0.00 0.00 2.97
483 774 0.101219 GGAAGCCGTTACCGATACGT 59.899 55.000 0.00 0.00 37.30 3.57
574 865 1.979308 TGGAAGACCGTATCCACCAAA 59.021 47.619 2.11 0.00 40.74 3.28
578 869 3.782656 AGACCGTATCCACCAAAAACT 57.217 42.857 0.00 0.00 0.00 2.66
579 870 4.895668 AGACCGTATCCACCAAAAACTA 57.104 40.909 0.00 0.00 0.00 2.24
580 871 5.431179 AGACCGTATCCACCAAAAACTAT 57.569 39.130 0.00 0.00 0.00 2.12
581 872 6.549433 AGACCGTATCCACCAAAAACTATA 57.451 37.500 0.00 0.00 0.00 1.31
582 873 6.949715 AGACCGTATCCACCAAAAACTATAA 58.050 36.000 0.00 0.00 0.00 0.98
583 874 7.571025 AGACCGTATCCACCAAAAACTATAAT 58.429 34.615 0.00 0.00 0.00 1.28
584 875 8.707449 AGACCGTATCCACCAAAAACTATAATA 58.293 33.333 0.00 0.00 0.00 0.98
585 876 9.498176 GACCGTATCCACCAAAAACTATAATAT 57.502 33.333 0.00 0.00 0.00 1.28
608 899 3.963665 TGACATGCAACTTACACAAAGC 58.036 40.909 0.00 0.00 38.93 3.51
609 900 3.379688 TGACATGCAACTTACACAAAGCA 59.620 39.130 0.00 0.00 38.93 3.91
610 901 4.037803 TGACATGCAACTTACACAAAGCAT 59.962 37.500 0.00 0.00 42.82 3.79
611 902 5.240403 TGACATGCAACTTACACAAAGCATA 59.760 36.000 0.00 0.00 40.38 3.14
612 903 6.072008 TGACATGCAACTTACACAAAGCATAT 60.072 34.615 0.00 0.00 40.38 1.78
613 904 6.094719 ACATGCAACTTACACAAAGCATATG 58.905 36.000 0.00 0.00 40.38 1.78
614 905 5.956068 TGCAACTTACACAAAGCATATGA 57.044 34.783 6.97 0.00 38.93 2.15
615 906 6.513806 TGCAACTTACACAAAGCATATGAT 57.486 33.333 6.97 0.00 38.93 2.45
616 907 6.554419 TGCAACTTACACAAAGCATATGATC 58.446 36.000 6.97 0.00 38.93 2.92
617 908 6.150809 TGCAACTTACACAAAGCATATGATCA 59.849 34.615 6.97 0.00 38.93 2.92
618 909 7.028962 GCAACTTACACAAAGCATATGATCAA 58.971 34.615 6.97 0.00 38.93 2.57
619 910 7.541783 GCAACTTACACAAAGCATATGATCAAA 59.458 33.333 6.97 0.00 38.93 2.69
620 911 9.577110 CAACTTACACAAAGCATATGATCAAAT 57.423 29.630 6.97 0.00 38.93 2.32
622 913 9.793252 ACTTACACAAAGCATATGATCAAATTC 57.207 29.630 6.97 0.00 38.93 2.17
623 914 8.839947 TTACACAAAGCATATGATCAAATTCG 57.160 30.769 6.97 0.00 0.00 3.34
624 915 6.855836 ACACAAAGCATATGATCAAATTCGT 58.144 32.000 6.97 0.00 0.00 3.85
625 916 7.984391 ACACAAAGCATATGATCAAATTCGTA 58.016 30.769 6.97 0.00 0.00 3.43
626 917 8.623903 ACACAAAGCATATGATCAAATTCGTAT 58.376 29.630 6.97 0.00 0.00 3.06
627 918 8.898792 CACAAAGCATATGATCAAATTCGTATG 58.101 33.333 6.97 3.43 43.70 2.39
628 919 8.623903 ACAAAGCATATGATCAAATTCGTATGT 58.376 29.630 6.97 0.00 43.18 2.29
629 920 8.898792 CAAAGCATATGATCAAATTCGTATGTG 58.101 33.333 6.97 0.00 43.18 3.21
630 921 7.967890 AGCATATGATCAAATTCGTATGTGA 57.032 32.000 6.97 0.00 43.18 3.58
631 922 8.382030 AGCATATGATCAAATTCGTATGTGAA 57.618 30.769 6.97 0.00 43.18 3.18
632 923 8.839343 AGCATATGATCAAATTCGTATGTGAAA 58.161 29.630 6.97 0.00 43.18 2.69
633 924 9.110617 GCATATGATCAAATTCGTATGTGAAAG 57.889 33.333 6.97 0.00 43.18 2.62
637 928 8.722480 TGATCAAATTCGTATGTGAAAGATCT 57.278 30.769 0.00 0.00 36.60 2.75
638 929 9.816354 TGATCAAATTCGTATGTGAAAGATCTA 57.184 29.630 0.00 0.00 36.60 1.98
700 991 6.436843 AATCTTGTCAATAGTTAAAGGCGG 57.563 37.500 0.00 0.00 0.00 6.13
701 992 4.901868 TCTTGTCAATAGTTAAAGGCGGT 58.098 39.130 0.00 0.00 0.00 5.68
702 993 4.933400 TCTTGTCAATAGTTAAAGGCGGTC 59.067 41.667 0.00 0.00 0.00 4.79
703 994 4.546829 TGTCAATAGTTAAAGGCGGTCT 57.453 40.909 0.00 0.00 0.00 3.85
704 995 4.901868 TGTCAATAGTTAAAGGCGGTCTT 58.098 39.130 0.00 0.00 37.28 3.01
705 996 6.040209 TGTCAATAGTTAAAGGCGGTCTTA 57.960 37.500 0.00 0.00 34.78 2.10
706 997 6.465948 TGTCAATAGTTAAAGGCGGTCTTAA 58.534 36.000 0.00 0.00 34.78 1.85
707 998 6.935771 TGTCAATAGTTAAAGGCGGTCTTAAA 59.064 34.615 0.00 0.00 34.78 1.52
708 999 7.444792 TGTCAATAGTTAAAGGCGGTCTTAAAA 59.555 33.333 0.00 0.00 34.78 1.52
709 1000 7.747799 GTCAATAGTTAAAGGCGGTCTTAAAAC 59.252 37.037 10.76 10.76 34.78 2.43
710 1001 7.444792 TCAATAGTTAAAGGCGGTCTTAAAACA 59.555 33.333 17.49 8.24 35.56 2.83
711 1002 5.428496 AGTTAAAGGCGGTCTTAAAACAC 57.572 39.130 17.49 3.41 35.56 3.32
712 1003 4.024641 AGTTAAAGGCGGTCTTAAAACACG 60.025 41.667 17.49 0.00 35.56 4.49
719 1010 3.998522 CGGTCTTAAAACACGCATTAGG 58.001 45.455 0.00 0.00 0.00 2.69
720 1011 3.726782 CGGTCTTAAAACACGCATTAGGC 60.727 47.826 0.00 0.00 39.90 3.93
721 1012 3.427098 GGTCTTAAAACACGCATTAGGCC 60.427 47.826 0.00 0.00 40.31 5.19
722 1013 3.439129 GTCTTAAAACACGCATTAGGCCT 59.561 43.478 11.78 11.78 40.31 5.19
723 1014 4.632688 GTCTTAAAACACGCATTAGGCCTA 59.367 41.667 8.91 8.91 40.31 3.93
724 1015 5.296035 GTCTTAAAACACGCATTAGGCCTAT 59.704 40.000 14.74 0.75 40.31 2.57
725 1016 6.480981 GTCTTAAAACACGCATTAGGCCTATA 59.519 38.462 14.74 5.18 40.31 1.31
726 1017 7.172703 GTCTTAAAACACGCATTAGGCCTATAT 59.827 37.037 14.74 7.44 40.31 0.86
727 1018 8.369424 TCTTAAAACACGCATTAGGCCTATATA 58.631 33.333 14.74 0.00 40.31 0.86
728 1019 8.542497 TTAAAACACGCATTAGGCCTATATAG 57.458 34.615 14.74 8.67 40.31 1.31
729 1020 5.995565 AACACGCATTAGGCCTATATAGA 57.004 39.130 14.74 0.00 40.31 1.98
730 1021 6.546428 AACACGCATTAGGCCTATATAGAT 57.454 37.500 14.74 0.00 40.31 1.98
731 1022 5.907207 ACACGCATTAGGCCTATATAGATG 58.093 41.667 14.74 14.66 40.31 2.90
732 1023 5.163405 ACACGCATTAGGCCTATATAGATGG 60.163 44.000 14.74 10.06 40.31 3.51
733 1024 5.069119 CACGCATTAGGCCTATATAGATGGA 59.931 44.000 14.74 0.00 40.31 3.41
745 1036 9.007901 GCCTATATAGATGGAATATTTGATGGC 57.992 37.037 11.53 0.00 0.00 4.40
754 1045 4.521639 GGAATATTTGATGGCTGCTGATCA 59.478 41.667 9.78 9.78 0.00 2.92
762 1053 4.172512 CTGCTGATCAGGGCGCCT 62.173 66.667 28.56 5.85 39.15 5.52
795 1086 2.592287 GGTGTCGCCGGGTTGAAA 60.592 61.111 2.18 0.00 0.00 2.69
796 1087 2.613506 GGTGTCGCCGGGTTGAAAG 61.614 63.158 2.18 0.00 0.00 2.62
797 1088 2.281208 TGTCGCCGGGTTGAAAGG 60.281 61.111 2.18 0.00 0.00 3.11
799 1090 1.598685 GTCGCCGGGTTGAAAGGAA 60.599 57.895 2.18 0.00 0.00 3.36
800 1091 1.302192 TCGCCGGGTTGAAAGGAAG 60.302 57.895 2.18 0.00 0.00 3.46
803 1094 1.324383 GCCGGGTTGAAAGGAAGAAA 58.676 50.000 2.18 0.00 0.00 2.52
804 1095 1.269723 GCCGGGTTGAAAGGAAGAAAG 59.730 52.381 2.18 0.00 0.00 2.62
808 1105 3.497227 CGGGTTGAAAGGAAGAAAGGGTA 60.497 47.826 0.00 0.00 0.00 3.69
817 1114 4.856509 AGGAAGAAAGGGTAATTACCTGC 58.143 43.478 29.26 16.59 45.72 4.85
873 1170 4.072088 CGCGCGGGTTGAGTGAAC 62.072 66.667 24.84 0.00 0.00 3.18
874 1171 4.072088 GCGCGGGTTGAGTGAACG 62.072 66.667 8.83 0.00 35.12 3.95
875 1172 4.072088 CGCGGGTTGAGTGAACGC 62.072 66.667 0.00 0.00 46.04 4.84
876 1173 2.665185 GCGGGTTGAGTGAACGCT 60.665 61.111 7.85 0.00 46.02 5.07
877 1174 2.668280 GCGGGTTGAGTGAACGCTC 61.668 63.158 7.85 8.23 46.02 5.03
945 1264 3.487544 GCGAGATGGAAATTTAGCCACAC 60.488 47.826 0.91 0.33 36.92 3.82
986 2484 3.917629 AGCTAGCTAGACCCTACATCCTA 59.082 47.826 25.15 0.00 0.00 2.94
987 2485 4.018779 AGCTAGCTAGACCCTACATCCTAG 60.019 50.000 25.15 0.00 33.58 3.02
988 2486 4.263594 GCTAGCTAGACCCTACATCCTAGT 60.264 50.000 25.15 0.00 33.14 2.57
989 2487 4.817874 AGCTAGACCCTACATCCTAGTT 57.182 45.455 0.00 0.00 33.14 2.24
990 2488 4.732065 AGCTAGACCCTACATCCTAGTTC 58.268 47.826 0.00 0.00 33.14 3.01
991 2489 3.827876 GCTAGACCCTACATCCTAGTTCC 59.172 52.174 0.00 0.00 33.14 3.62
992 2490 4.448054 GCTAGACCCTACATCCTAGTTCCT 60.448 50.000 0.00 0.00 33.14 3.36
1120 2618 2.885113 TCGAGTGCACCATCGAGG 59.115 61.111 22.76 0.00 42.61 4.63
1140 2638 2.452813 CCCGAACAAGATCGCCACG 61.453 63.158 0.00 0.00 41.40 4.94
1248 2746 3.028019 TGTGAGCGCGTCAACGAC 61.028 61.111 8.43 0.00 43.02 4.34
1279 2777 3.945434 GCGCCAGGATGATGCGTG 61.945 66.667 0.00 0.00 46.16 5.34
1280 2778 3.274586 CGCCAGGATGATGCGTGG 61.275 66.667 0.00 0.00 40.94 4.94
1281 2779 2.124570 GCCAGGATGATGCGTGGT 60.125 61.111 0.00 0.00 43.78 4.16
1282 2780 2.475466 GCCAGGATGATGCGTGGTG 61.475 63.158 0.00 0.00 43.78 4.17
1283 2781 1.221566 CCAGGATGATGCGTGGTGA 59.778 57.895 0.00 0.00 39.69 4.02
1312 2810 2.607038 CCTGCGGTTTGTAAGCTTTTCC 60.607 50.000 3.20 0.00 0.00 3.13
1356 2857 1.362717 GCGGCGGTTCAGATAGCTA 59.637 57.895 9.78 0.00 0.00 3.32
1357 2858 0.940047 GCGGCGGTTCAGATAGCTAC 60.940 60.000 9.78 0.00 0.00 3.58
1358 2859 0.660595 CGGCGGTTCAGATAGCTACG 60.661 60.000 0.00 0.00 0.00 3.51
1360 2861 1.605710 GGCGGTTCAGATAGCTACGTA 59.394 52.381 0.00 0.00 0.00 3.57
1361 2862 2.604132 GGCGGTTCAGATAGCTACGTAC 60.604 54.545 0.00 0.00 0.00 3.67
1362 2863 2.032550 GCGGTTCAGATAGCTACGTACA 59.967 50.000 0.00 0.00 0.00 2.90
1363 2864 3.488047 GCGGTTCAGATAGCTACGTACAA 60.488 47.826 0.00 0.00 0.00 2.41
1364 2865 4.665212 CGGTTCAGATAGCTACGTACAAA 58.335 43.478 0.00 0.00 0.00 2.83
1370 2871 6.869695 TCAGATAGCTACGTACAAAAATCCA 58.130 36.000 0.00 0.00 0.00 3.41
1376 2877 4.157105 GCTACGTACAAAAATCCATGGGTT 59.843 41.667 13.02 8.57 0.00 4.11
1379 2880 4.585162 ACGTACAAAAATCCATGGGTTCAA 59.415 37.500 11.60 0.00 0.00 2.69
1382 2883 5.365021 ACAAAAATCCATGGGTTCAACAA 57.635 34.783 11.60 0.00 0.00 2.83
1384 2885 6.363882 ACAAAAATCCATGGGTTCAACAATT 58.636 32.000 11.60 0.00 0.00 2.32
1385 2886 7.512992 ACAAAAATCCATGGGTTCAACAATTA 58.487 30.769 11.60 0.00 0.00 1.40
1386 2887 7.995488 ACAAAAATCCATGGGTTCAACAATTAA 59.005 29.630 11.60 0.00 0.00 1.40
1387 2888 7.977789 AAAATCCATGGGTTCAACAATTAAC 57.022 32.000 11.60 0.00 0.00 2.01
1398 2899 8.311109 GGGTTCAACAATTAACTAATGGTGATT 58.689 33.333 0.00 0.00 30.50 2.57
1423 2924 0.249996 ATTTGCCTTGGTTGCACAGC 60.250 50.000 0.00 0.00 38.72 4.40
1499 3000 2.943033 CCACCGCCCAGTAATAAGAAAG 59.057 50.000 0.00 0.00 0.00 2.62
1514 3015 1.202940 AGAAAGGTCCCTGCAAACCTC 60.203 52.381 13.77 5.10 45.21 3.85
1515 3016 0.537371 AAAGGTCCCTGCAAACCTCG 60.537 55.000 13.77 0.00 45.21 4.63
1516 3017 3.056328 GGTCCCTGCAAACCTCGC 61.056 66.667 5.53 0.00 32.54 5.03
1517 3018 2.281484 GTCCCTGCAAACCTCGCA 60.281 61.111 0.00 0.00 37.88 5.10
1518 3019 1.896660 GTCCCTGCAAACCTCGCAA 60.897 57.895 0.00 0.00 39.30 4.85
1519 3020 1.600636 TCCCTGCAAACCTCGCAAG 60.601 57.895 0.00 0.00 39.30 4.01
1520 3021 2.256461 CCTGCAAACCTCGCAAGC 59.744 61.111 0.00 0.00 39.30 4.01
1521 3022 2.263741 CCTGCAAACCTCGCAAGCT 61.264 57.895 0.00 0.00 39.30 3.74
1522 3023 1.208614 CTGCAAACCTCGCAAGCTC 59.791 57.895 0.00 0.00 39.30 4.09
1523 3024 2.192608 CTGCAAACCTCGCAAGCTCC 62.193 60.000 0.00 0.00 39.30 4.70
1524 3025 2.863153 CAAACCTCGCAAGCTCCG 59.137 61.111 0.00 0.00 37.18 4.63
1525 3026 3.050275 AAACCTCGCAAGCTCCGC 61.050 61.111 2.16 0.13 37.18 5.54
1534 3035 4.947147 AAGCTCCGCGGGCAACAA 62.947 61.111 31.19 11.13 39.74 2.83
1564 3065 3.463944 ACAGTTGTCCGTTAACCTGAAG 58.536 45.455 12.43 0.00 0.00 3.02
1565 3066 3.133362 ACAGTTGTCCGTTAACCTGAAGA 59.867 43.478 12.43 0.00 0.00 2.87
1566 3067 3.741344 CAGTTGTCCGTTAACCTGAAGAG 59.259 47.826 0.00 0.00 0.00 2.85
1567 3068 3.640029 AGTTGTCCGTTAACCTGAAGAGA 59.360 43.478 0.00 0.00 0.00 3.10
1568 3069 3.936372 TGTCCGTTAACCTGAAGAGAG 57.064 47.619 0.00 0.00 0.00 3.20
1569 3070 3.493334 TGTCCGTTAACCTGAAGAGAGA 58.507 45.455 0.00 0.00 0.00 3.10
1570 3071 4.087182 TGTCCGTTAACCTGAAGAGAGAT 58.913 43.478 0.00 0.00 0.00 2.75
1571 3072 4.082190 TGTCCGTTAACCTGAAGAGAGATG 60.082 45.833 0.00 0.00 0.00 2.90
1572 3073 3.119101 TCCGTTAACCTGAAGAGAGATGC 60.119 47.826 0.00 0.00 0.00 3.91
1573 3074 3.118956 CCGTTAACCTGAAGAGAGATGCT 60.119 47.826 0.00 0.00 0.00 3.79
1574 3075 4.098044 CCGTTAACCTGAAGAGAGATGCTA 59.902 45.833 0.00 0.00 0.00 3.49
1575 3076 5.038033 CGTTAACCTGAAGAGAGATGCTAC 58.962 45.833 0.00 0.00 0.00 3.58
1576 3077 5.393135 CGTTAACCTGAAGAGAGATGCTACA 60.393 44.000 0.00 0.00 0.00 2.74
1577 3078 4.464069 AACCTGAAGAGAGATGCTACAC 57.536 45.455 0.00 0.00 0.00 2.90
1578 3079 2.763448 ACCTGAAGAGAGATGCTACACC 59.237 50.000 0.00 0.00 0.00 4.16
1580 3081 4.211125 CCTGAAGAGAGATGCTACACCTA 58.789 47.826 0.00 0.00 0.00 3.08
1581 3082 4.037446 CCTGAAGAGAGATGCTACACCTAC 59.963 50.000 0.00 0.00 0.00 3.18
1582 3083 3.628032 TGAAGAGAGATGCTACACCTACG 59.372 47.826 0.00 0.00 0.00 3.51
1583 3084 3.284793 AGAGAGATGCTACACCTACGT 57.715 47.619 0.00 0.00 0.00 3.57
1584 3085 4.418973 AGAGAGATGCTACACCTACGTA 57.581 45.455 0.00 0.00 0.00 3.57
1585 3086 4.778579 AGAGAGATGCTACACCTACGTAA 58.221 43.478 0.00 0.00 0.00 3.18
1586 3087 5.378332 AGAGAGATGCTACACCTACGTAAT 58.622 41.667 0.00 0.00 0.00 1.89
1587 3088 5.239744 AGAGAGATGCTACACCTACGTAATG 59.760 44.000 0.00 0.62 0.00 1.90
1588 3089 4.888239 AGAGATGCTACACCTACGTAATGT 59.112 41.667 14.59 14.59 0.00 2.71
1589 3090 5.360144 AGAGATGCTACACCTACGTAATGTT 59.640 40.000 15.22 0.64 0.00 2.71
1590 3091 5.974108 AGATGCTACACCTACGTAATGTTT 58.026 37.500 15.22 3.76 0.00 2.83
1591 3092 6.040878 AGATGCTACACCTACGTAATGTTTC 58.959 40.000 15.22 9.40 0.00 2.78
1592 3093 5.395682 TGCTACACCTACGTAATGTTTCT 57.604 39.130 15.22 0.00 0.00 2.52
1593 3094 5.404946 TGCTACACCTACGTAATGTTTCTC 58.595 41.667 15.22 5.73 0.00 2.87
1594 3095 5.047872 TGCTACACCTACGTAATGTTTCTCA 60.048 40.000 15.22 7.60 0.00 3.27
1595 3096 5.287992 GCTACACCTACGTAATGTTTCTCAC 59.712 44.000 15.22 0.09 0.00 3.51
1596 3097 4.232221 ACACCTACGTAATGTTTCTCACG 58.768 43.478 6.37 0.00 40.15 4.35
1598 3099 5.048782 ACACCTACGTAATGTTTCTCACGTA 60.049 40.000 6.37 5.80 45.04 3.57
1603 3104 5.393962 ACGTAATGTTTCTCACGTAGTACC 58.606 41.667 0.00 0.00 45.04 3.34
1604 3105 5.182001 ACGTAATGTTTCTCACGTAGTACCT 59.818 40.000 0.00 0.00 45.04 3.08
1605 3106 6.088824 CGTAATGTTTCTCACGTAGTACCTT 58.911 40.000 0.00 0.00 41.61 3.50
1606 3107 6.250104 CGTAATGTTTCTCACGTAGTACCTTC 59.750 42.308 0.00 0.00 41.61 3.46
1607 3108 4.151258 TGTTTCTCACGTAGTACCTTCG 57.849 45.455 0.00 0.00 41.61 3.79
1608 3109 3.565482 TGTTTCTCACGTAGTACCTTCGT 59.435 43.478 0.00 2.55 41.61 3.85
1609 3110 4.754618 TGTTTCTCACGTAGTACCTTCGTA 59.245 41.667 7.14 0.00 41.61 3.43
1610 3111 5.412594 TGTTTCTCACGTAGTACCTTCGTAT 59.587 40.000 7.14 0.00 41.61 3.06
1611 3112 5.475273 TTCTCACGTAGTACCTTCGTATG 57.525 43.478 7.14 4.60 41.61 2.39
1612 3113 3.873361 TCTCACGTAGTACCTTCGTATGG 59.127 47.826 7.14 0.00 41.61 2.74
1613 3114 3.609853 TCACGTAGTACCTTCGTATGGT 58.390 45.455 7.14 0.00 41.61 3.55
1614 3115 3.623060 TCACGTAGTACCTTCGTATGGTC 59.377 47.826 7.14 0.00 41.61 4.02
1615 3116 3.624861 CACGTAGTACCTTCGTATGGTCT 59.375 47.826 7.14 0.00 41.61 3.85
1616 3117 3.624861 ACGTAGTACCTTCGTATGGTCTG 59.375 47.826 5.94 0.00 41.94 3.51
1617 3118 3.873361 CGTAGTACCTTCGTATGGTCTGA 59.127 47.826 0.00 0.00 38.88 3.27
1618 3119 4.514441 CGTAGTACCTTCGTATGGTCTGAT 59.486 45.833 0.00 0.00 38.88 2.90
1619 3120 5.008415 CGTAGTACCTTCGTATGGTCTGATT 59.992 44.000 0.00 0.00 38.88 2.57
1620 3121 5.934402 AGTACCTTCGTATGGTCTGATTT 57.066 39.130 0.00 0.00 38.88 2.17
1621 3122 5.661458 AGTACCTTCGTATGGTCTGATTTG 58.339 41.667 0.00 0.00 38.88 2.32
1622 3123 4.819105 ACCTTCGTATGGTCTGATTTGA 57.181 40.909 0.00 0.00 31.03 2.69
1623 3124 4.504858 ACCTTCGTATGGTCTGATTTGAC 58.495 43.478 0.00 0.00 31.03 3.18
1624 3125 4.020573 ACCTTCGTATGGTCTGATTTGACA 60.021 41.667 0.00 0.00 38.61 3.58
1625 3126 4.568359 CCTTCGTATGGTCTGATTTGACAG 59.432 45.833 0.00 0.00 38.61 3.51
1626 3127 4.801330 TCGTATGGTCTGATTTGACAGT 57.199 40.909 0.00 0.00 38.61 3.55
1627 3128 5.147330 TCGTATGGTCTGATTTGACAGTT 57.853 39.130 0.00 0.00 38.61 3.16
1628 3129 5.547465 TCGTATGGTCTGATTTGACAGTTT 58.453 37.500 0.00 0.00 38.61 2.66
1629 3130 5.995282 TCGTATGGTCTGATTTGACAGTTTT 59.005 36.000 0.00 0.00 38.61 2.43
1630 3131 6.485313 TCGTATGGTCTGATTTGACAGTTTTT 59.515 34.615 0.00 0.00 38.61 1.94
1650 3151 6.412362 TTTTTATTGGGCTTTAGTTGAGCA 57.588 33.333 0.00 0.00 41.89 4.26
1651 3152 5.385509 TTTATTGGGCTTTAGTTGAGCAC 57.614 39.130 0.00 0.00 43.83 4.40
1653 3154 1.604604 TGGGCTTTAGTTGAGCACAC 58.395 50.000 0.00 0.00 45.84 3.82
1654 3155 0.517316 GGGCTTTAGTTGAGCACACG 59.483 55.000 0.00 0.00 43.05 4.49
1655 3156 0.517316 GGCTTTAGTTGAGCACACGG 59.483 55.000 0.00 0.00 41.89 4.94
1656 3157 0.517316 GCTTTAGTTGAGCACACGGG 59.483 55.000 0.00 0.00 39.89 5.28
1657 3158 0.517316 CTTTAGTTGAGCACACGGGC 59.483 55.000 0.00 0.00 0.00 6.13
1658 3159 0.887387 TTTAGTTGAGCACACGGGCC 60.887 55.000 0.00 0.00 0.00 5.80
1659 3160 2.741486 TTAGTTGAGCACACGGGCCC 62.741 60.000 13.57 13.57 0.00 5.80
1660 3161 4.947147 GTTGAGCACACGGGCCCA 62.947 66.667 24.92 0.00 0.00 5.36
1661 3162 4.641645 TTGAGCACACGGGCCCAG 62.642 66.667 24.92 16.68 0.00 4.45
1672 3173 3.200522 GGCCCAGCCTTGAAATCG 58.799 61.111 0.00 0.00 46.69 3.34
1673 3174 2.418083 GGCCCAGCCTTGAAATCGG 61.418 63.158 0.00 0.00 46.69 4.18
1674 3175 2.418083 GCCCAGCCTTGAAATCGGG 61.418 63.158 0.00 0.00 36.71 5.14
1675 3176 1.754234 CCCAGCCTTGAAATCGGGG 60.754 63.158 0.00 0.00 0.00 5.73
1676 3177 1.754234 CCAGCCTTGAAATCGGGGG 60.754 63.158 0.00 0.00 0.00 5.40
1677 3178 1.000896 CAGCCTTGAAATCGGGGGT 60.001 57.895 0.00 0.00 0.00 4.95
1678 3179 0.611896 CAGCCTTGAAATCGGGGGTT 60.612 55.000 0.00 0.00 0.00 4.11
1679 3180 0.996583 AGCCTTGAAATCGGGGGTTA 59.003 50.000 0.00 0.00 0.00 2.85
1680 3181 1.356398 AGCCTTGAAATCGGGGGTTAA 59.644 47.619 0.00 0.00 0.00 2.01
1681 3182 2.024369 AGCCTTGAAATCGGGGGTTAAT 60.024 45.455 0.00 0.00 0.00 1.40
1682 3183 2.764010 GCCTTGAAATCGGGGGTTAATT 59.236 45.455 0.00 0.00 0.00 1.40
1683 3184 3.955551 GCCTTGAAATCGGGGGTTAATTA 59.044 43.478 0.00 0.00 0.00 1.40
1684 3185 4.037565 GCCTTGAAATCGGGGGTTAATTAG 59.962 45.833 0.00 0.00 0.00 1.73
1685 3186 5.198207 CCTTGAAATCGGGGGTTAATTAGT 58.802 41.667 0.00 0.00 0.00 2.24
1686 3187 5.067283 CCTTGAAATCGGGGGTTAATTAGTG 59.933 44.000 0.00 0.00 0.00 2.74
1687 3188 4.528920 TGAAATCGGGGGTTAATTAGTGG 58.471 43.478 0.00 0.00 0.00 4.00
1688 3189 4.227754 TGAAATCGGGGGTTAATTAGTGGA 59.772 41.667 0.00 0.00 0.00 4.02
1689 3190 4.432980 AATCGGGGGTTAATTAGTGGAG 57.567 45.455 0.00 0.00 0.00 3.86
1690 3191 3.119009 TCGGGGGTTAATTAGTGGAGA 57.881 47.619 0.00 0.00 0.00 3.71
1691 3192 3.452878 TCGGGGGTTAATTAGTGGAGAA 58.547 45.455 0.00 0.00 0.00 2.87
1692 3193 3.453353 TCGGGGGTTAATTAGTGGAGAAG 59.547 47.826 0.00 0.00 0.00 2.85
1693 3194 3.433173 CGGGGGTTAATTAGTGGAGAAGG 60.433 52.174 0.00 0.00 0.00 3.46
1694 3195 3.117625 GGGGGTTAATTAGTGGAGAAGGG 60.118 52.174 0.00 0.00 0.00 3.95
1695 3196 3.784202 GGGGTTAATTAGTGGAGAAGGGA 59.216 47.826 0.00 0.00 0.00 4.20
1696 3197 4.228895 GGGGTTAATTAGTGGAGAAGGGAA 59.771 45.833 0.00 0.00 0.00 3.97
1697 3198 5.191426 GGGTTAATTAGTGGAGAAGGGAAC 58.809 45.833 0.00 0.00 0.00 3.62
1699 3200 6.157471 GGGTTAATTAGTGGAGAAGGGAACTA 59.843 42.308 0.00 0.00 42.68 2.24
1700 3201 7.046652 GGTTAATTAGTGGAGAAGGGAACTAC 58.953 42.308 0.00 0.00 42.68 2.73
1701 3202 5.340439 AATTAGTGGAGAAGGGAACTACG 57.660 43.478 0.00 0.00 42.68 3.51
1702 3203 2.305858 AGTGGAGAAGGGAACTACGT 57.694 50.000 0.00 0.00 42.68 3.57
1703 3204 3.446442 AGTGGAGAAGGGAACTACGTA 57.554 47.619 0.00 0.00 42.68 3.57
1704 3205 3.354467 AGTGGAGAAGGGAACTACGTAG 58.646 50.000 20.97 20.97 42.68 3.51
1705 3206 2.426381 GTGGAGAAGGGAACTACGTAGG 59.574 54.545 25.63 8.78 42.68 3.18
1706 3207 2.042162 TGGAGAAGGGAACTACGTAGGT 59.958 50.000 25.63 20.80 42.68 3.08
1707 3208 3.095332 GGAGAAGGGAACTACGTAGGTT 58.905 50.000 25.63 16.73 42.68 3.50
1708 3209 4.263905 TGGAGAAGGGAACTACGTAGGTTA 60.264 45.833 25.63 0.00 42.68 2.85
1709 3210 4.097135 GGAGAAGGGAACTACGTAGGTTAC 59.903 50.000 25.63 16.06 42.68 2.50
1720 3221 3.754188 CGTAGGTTACGTAGAAGCAGT 57.246 47.619 3.35 0.00 46.41 4.40
1721 3222 4.864916 CGTAGGTTACGTAGAAGCAGTA 57.135 45.455 3.35 0.00 46.41 2.74
1722 3223 4.582459 CGTAGGTTACGTAGAAGCAGTAC 58.418 47.826 3.35 0.00 46.41 2.73
1723 3224 3.754188 AGGTTACGTAGAAGCAGTACG 57.246 47.619 10.04 10.04 46.94 3.67
1729 3230 3.048942 CGTAGAAGCAGTACGTAGGTG 57.951 52.381 0.00 0.00 38.74 4.00
1730 3231 2.417933 CGTAGAAGCAGTACGTAGGTGT 59.582 50.000 0.00 0.00 38.74 4.16
1731 3232 3.618594 CGTAGAAGCAGTACGTAGGTGTA 59.381 47.826 0.00 0.00 38.74 2.90
1732 3233 4.260132 CGTAGAAGCAGTACGTAGGTGTAG 60.260 50.000 0.00 0.00 38.74 2.74
1733 3234 2.422832 AGAAGCAGTACGTAGGTGTAGC 59.577 50.000 0.00 0.00 0.00 3.58
1734 3235 1.830279 AGCAGTACGTAGGTGTAGCA 58.170 50.000 0.00 0.00 0.00 3.49
1735 3236 2.376109 AGCAGTACGTAGGTGTAGCAT 58.624 47.619 0.00 0.00 0.00 3.79
1736 3237 2.758979 AGCAGTACGTAGGTGTAGCATT 59.241 45.455 0.00 0.00 0.00 3.56
1737 3238 3.949754 AGCAGTACGTAGGTGTAGCATTA 59.050 43.478 0.00 0.00 0.00 1.90
1738 3239 4.583489 AGCAGTACGTAGGTGTAGCATTAT 59.417 41.667 0.00 0.00 0.00 1.28
1739 3240 5.068723 AGCAGTACGTAGGTGTAGCATTATT 59.931 40.000 0.00 0.00 0.00 1.40
1740 3241 5.175126 GCAGTACGTAGGTGTAGCATTATTG 59.825 44.000 0.00 0.00 0.00 1.90
1741 3242 6.270815 CAGTACGTAGGTGTAGCATTATTGT 58.729 40.000 0.00 0.00 0.00 2.71
1742 3243 7.420002 CAGTACGTAGGTGTAGCATTATTGTA 58.580 38.462 0.00 0.00 0.00 2.41
1743 3244 7.916977 CAGTACGTAGGTGTAGCATTATTGTAA 59.083 37.037 0.00 0.00 0.00 2.41
1744 3245 7.917505 AGTACGTAGGTGTAGCATTATTGTAAC 59.082 37.037 0.00 0.00 0.00 2.50
1745 3246 6.044682 ACGTAGGTGTAGCATTATTGTAACC 58.955 40.000 0.00 0.00 0.00 2.85
1746 3247 6.127253 ACGTAGGTGTAGCATTATTGTAACCT 60.127 38.462 0.00 0.00 39.94 3.50
1747 3248 6.420008 CGTAGGTGTAGCATTATTGTAACCTC 59.580 42.308 0.00 0.00 37.87 3.85
1748 3249 6.308015 AGGTGTAGCATTATTGTAACCTCA 57.692 37.500 0.00 0.00 31.09 3.86
1749 3250 6.717289 AGGTGTAGCATTATTGTAACCTCAA 58.283 36.000 0.00 0.00 31.09 3.02
1750 3251 7.346471 AGGTGTAGCATTATTGTAACCTCAAT 58.654 34.615 0.00 0.00 40.50 2.57
1751 3252 8.491134 AGGTGTAGCATTATTGTAACCTCAATA 58.509 33.333 0.00 0.00 38.68 1.90
1752 3253 9.284968 GGTGTAGCATTATTGTAACCTCAATAT 57.715 33.333 0.00 0.00 39.17 1.28
1754 3255 9.845740 TGTAGCATTATTGTAACCTCAATATGT 57.154 29.630 0.00 0.00 39.17 2.29
1817 3318 7.279750 TGGTTACCAATTTTCCAACTTCTAC 57.720 36.000 0.00 0.00 0.00 2.59
1837 3338 4.803329 ACAGAAGATATTTGGAGGGCAT 57.197 40.909 0.00 0.00 0.00 4.40
1871 3387 4.996788 ATTGATTTGAGGGCATTCAGTC 57.003 40.909 0.00 0.00 0.00 3.51
1885 3401 4.375405 GCATTCAGTCGATGTACAATAGCG 60.375 45.833 0.00 1.98 0.00 4.26
1908 3424 2.011222 GTTCGCGGGTCATTTGGATTA 58.989 47.619 6.13 0.00 0.00 1.75
1921 3441 1.140312 TGGATTAGGAGGCCATGGAC 58.860 55.000 18.40 14.73 0.00 4.02
1927 3447 2.512515 GAGGCCATGGACACGCTC 60.513 66.667 22.78 4.24 0.00 5.03
1948 3468 4.181578 TCATCTTAAGACTGCGCTAAACC 58.818 43.478 9.73 0.00 0.00 3.27
1950 3470 3.997762 TCTTAAGACTGCGCTAAACCAA 58.002 40.909 9.73 0.00 0.00 3.67
1951 3471 4.382291 TCTTAAGACTGCGCTAAACCAAA 58.618 39.130 9.73 0.00 0.00 3.28
1952 3472 5.001232 TCTTAAGACTGCGCTAAACCAAAT 58.999 37.500 9.73 0.00 0.00 2.32
1953 3473 6.167685 TCTTAAGACTGCGCTAAACCAAATA 58.832 36.000 9.73 0.00 0.00 1.40
1954 3474 4.946784 AAGACTGCGCTAAACCAAATAG 57.053 40.909 9.73 0.00 0.00 1.73
1962 3482 7.767198 ACTGCGCTAAACCAAATAGAATAGTTA 59.233 33.333 9.73 0.00 0.00 2.24
1970 3490 8.732746 AACCAAATAGAATAGTTAATCAGCGT 57.267 30.769 0.00 0.00 0.00 5.07
2010 3530 4.934356 AGGGCAAATCAGGATAGTCAAAA 58.066 39.130 0.00 0.00 0.00 2.44
2049 3569 2.093288 AGCAGTGTCAGGGTGTATCATG 60.093 50.000 0.00 0.00 0.00 3.07
2052 3572 1.559682 GTGTCAGGGTGTATCATGGGT 59.440 52.381 0.00 0.00 0.00 4.51
2148 3668 2.839486 TCTGACTAGCCTTGTGTTGG 57.161 50.000 0.00 0.00 0.00 3.77
2157 3677 0.951558 CCTTGTGTTGGTAGGTGCAC 59.048 55.000 8.80 8.80 0.00 4.57
2162 3682 1.997606 GTGTTGGTAGGTGCACGATAC 59.002 52.381 17.96 17.96 0.00 2.24
2272 3793 2.489938 TGTGCACCCTCCAGATTAAC 57.510 50.000 15.69 0.00 0.00 2.01
2276 3797 3.129287 GTGCACCCTCCAGATTAACATTG 59.871 47.826 5.22 0.00 0.00 2.82
2333 3854 9.665719 AATATTTTAGAAAATTGGCAACGGAAT 57.334 25.926 0.00 0.00 39.24 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 6.419791 TCATAATAAACCACCGGTTCAGATT 58.580 36.000 2.97 4.00 46.20 2.40
37 38 4.938832 CACTCATAATAAACCACCGGTTCA 59.061 41.667 2.97 0.00 46.20 3.18
78 79 5.374071 CTGATGATCATGTGGAGGATTTGA 58.626 41.667 14.30 0.00 0.00 2.69
185 187 1.717077 AGAGACTACTGGGACCTTCCA 59.283 52.381 0.00 0.00 38.64 3.53
188 190 3.370104 CATGAGAGACTACTGGGACCTT 58.630 50.000 0.00 0.00 0.00 3.50
270 272 0.539518 TGTGTACTATGCGGCCATGT 59.460 50.000 2.24 0.00 32.85 3.21
372 374 1.274167 CGGGACACCAGCTAAAGTACA 59.726 52.381 0.00 0.00 36.13 2.90
380 382 1.371558 GAAGAACGGGACACCAGCT 59.628 57.895 0.00 0.00 36.13 4.24
556 847 4.070009 AGTTTTTGGTGGATACGGTCTTC 58.930 43.478 0.00 0.00 42.51 2.87
582 873 8.131100 GCTTTGTGTAAGTTGCATGTCATATAT 58.869 33.333 0.00 0.00 36.19 0.86
583 874 7.120432 TGCTTTGTGTAAGTTGCATGTCATATA 59.880 33.333 0.00 0.00 36.19 0.86
584 875 6.072008 TGCTTTGTGTAAGTTGCATGTCATAT 60.072 34.615 0.00 0.00 36.19 1.78
585 876 5.240403 TGCTTTGTGTAAGTTGCATGTCATA 59.760 36.000 0.00 0.00 36.19 2.15
586 877 4.037803 TGCTTTGTGTAAGTTGCATGTCAT 59.962 37.500 0.00 0.00 36.19 3.06
587 878 3.379688 TGCTTTGTGTAAGTTGCATGTCA 59.620 39.130 0.00 0.00 36.19 3.58
588 879 3.963665 TGCTTTGTGTAAGTTGCATGTC 58.036 40.909 0.00 0.00 36.19 3.06
589 880 4.589216 ATGCTTTGTGTAAGTTGCATGT 57.411 36.364 0.00 0.00 39.30 3.21
590 881 6.324042 TCATATGCTTTGTGTAAGTTGCATG 58.676 36.000 8.29 0.00 40.65 4.06
591 882 6.513806 TCATATGCTTTGTGTAAGTTGCAT 57.486 33.333 0.00 0.00 42.64 3.96
592 883 5.956068 TCATATGCTTTGTGTAAGTTGCA 57.044 34.783 0.00 0.00 36.19 4.08
593 884 6.554419 TGATCATATGCTTTGTGTAAGTTGC 58.446 36.000 0.00 0.00 36.19 4.17
594 885 8.969121 TTTGATCATATGCTTTGTGTAAGTTG 57.031 30.769 0.00 0.00 36.19 3.16
596 887 9.793252 GAATTTGATCATATGCTTTGTGTAAGT 57.207 29.630 0.00 0.00 36.19 2.24
597 888 8.950961 CGAATTTGATCATATGCTTTGTGTAAG 58.049 33.333 0.00 0.00 36.90 2.34
598 889 8.458052 ACGAATTTGATCATATGCTTTGTGTAA 58.542 29.630 0.00 0.00 0.00 2.41
599 890 7.984391 ACGAATTTGATCATATGCTTTGTGTA 58.016 30.769 0.00 0.00 0.00 2.90
600 891 6.855836 ACGAATTTGATCATATGCTTTGTGT 58.144 32.000 0.00 0.00 0.00 3.72
601 892 8.898792 CATACGAATTTGATCATATGCTTTGTG 58.101 33.333 0.00 0.00 0.00 3.33
602 893 8.623903 ACATACGAATTTGATCATATGCTTTGT 58.376 29.630 10.35 4.62 0.00 2.83
603 894 8.898792 CACATACGAATTTGATCATATGCTTTG 58.101 33.333 10.35 4.76 0.00 2.77
604 895 8.839343 TCACATACGAATTTGATCATATGCTTT 58.161 29.630 10.35 0.00 0.00 3.51
605 896 8.382030 TCACATACGAATTTGATCATATGCTT 57.618 30.769 10.35 1.14 0.00 3.91
606 897 7.967890 TCACATACGAATTTGATCATATGCT 57.032 32.000 10.35 0.00 0.00 3.79
607 898 9.110617 CTTTCACATACGAATTTGATCATATGC 57.889 33.333 10.35 3.42 0.00 3.14
611 902 9.334947 AGATCTTTCACATACGAATTTGATCAT 57.665 29.630 0.00 0.00 33.61 2.45
612 903 8.722480 AGATCTTTCACATACGAATTTGATCA 57.278 30.769 0.00 0.00 33.61 2.92
674 965 8.621286 CCGCCTTTAACTATTGACAAGATTAAT 58.379 33.333 0.00 0.00 0.00 1.40
675 966 7.608761 ACCGCCTTTAACTATTGACAAGATTAA 59.391 33.333 0.00 0.00 0.00 1.40
676 967 7.107542 ACCGCCTTTAACTATTGACAAGATTA 58.892 34.615 0.00 0.00 0.00 1.75
677 968 5.944007 ACCGCCTTTAACTATTGACAAGATT 59.056 36.000 0.00 0.00 0.00 2.40
678 969 5.497474 ACCGCCTTTAACTATTGACAAGAT 58.503 37.500 0.00 0.00 0.00 2.40
679 970 4.901868 ACCGCCTTTAACTATTGACAAGA 58.098 39.130 0.00 0.00 0.00 3.02
680 971 4.935808 AGACCGCCTTTAACTATTGACAAG 59.064 41.667 0.00 0.00 0.00 3.16
681 972 4.901868 AGACCGCCTTTAACTATTGACAA 58.098 39.130 0.00 0.00 0.00 3.18
682 973 4.546829 AGACCGCCTTTAACTATTGACA 57.453 40.909 0.00 0.00 0.00 3.58
683 974 6.973229 TTAAGACCGCCTTTAACTATTGAC 57.027 37.500 0.00 0.00 36.34 3.18
684 975 7.444792 TGTTTTAAGACCGCCTTTAACTATTGA 59.555 33.333 0.00 0.00 36.34 2.57
685 976 7.536281 GTGTTTTAAGACCGCCTTTAACTATTG 59.464 37.037 0.00 0.00 36.34 1.90
686 977 7.571798 CGTGTTTTAAGACCGCCTTTAACTATT 60.572 37.037 0.00 0.00 36.34 1.73
687 978 6.128472 CGTGTTTTAAGACCGCCTTTAACTAT 60.128 38.462 0.00 0.00 36.34 2.12
688 979 5.177327 CGTGTTTTAAGACCGCCTTTAACTA 59.823 40.000 0.00 0.00 36.34 2.24
689 980 4.024641 CGTGTTTTAAGACCGCCTTTAACT 60.025 41.667 0.00 0.00 36.34 2.24
690 981 4.213674 CGTGTTTTAAGACCGCCTTTAAC 58.786 43.478 0.00 0.00 36.34 2.01
691 982 3.303924 GCGTGTTTTAAGACCGCCTTTAA 60.304 43.478 16.04 0.00 36.34 1.52
692 983 2.223845 GCGTGTTTTAAGACCGCCTTTA 59.776 45.455 16.04 0.00 36.34 1.85
693 984 1.002142 GCGTGTTTTAAGACCGCCTTT 60.002 47.619 16.04 0.00 36.34 3.11
694 985 0.589708 GCGTGTTTTAAGACCGCCTT 59.410 50.000 16.04 0.00 38.87 4.35
695 986 0.533308 TGCGTGTTTTAAGACCGCCT 60.533 50.000 20.82 0.00 37.96 5.52
696 987 0.519961 ATGCGTGTTTTAAGACCGCC 59.480 50.000 20.82 9.91 37.96 6.13
697 988 2.325509 AATGCGTGTTTTAAGACCGC 57.674 45.000 18.50 18.50 38.67 5.68
698 989 3.726782 GCCTAATGCGTGTTTTAAGACCG 60.727 47.826 0.00 0.00 0.00 4.79
699 990 3.427098 GGCCTAATGCGTGTTTTAAGACC 60.427 47.826 0.00 0.00 42.61 3.85
700 991 3.439129 AGGCCTAATGCGTGTTTTAAGAC 59.561 43.478 1.29 0.00 42.61 3.01
701 992 3.681593 AGGCCTAATGCGTGTTTTAAGA 58.318 40.909 1.29 0.00 42.61 2.10
702 993 5.751243 ATAGGCCTAATGCGTGTTTTAAG 57.249 39.130 18.42 0.00 42.61 1.85
703 994 8.369424 TCTATATAGGCCTAATGCGTGTTTTAA 58.631 33.333 18.42 0.00 42.61 1.52
704 995 7.898918 TCTATATAGGCCTAATGCGTGTTTTA 58.101 34.615 18.42 0.30 42.61 1.52
705 996 6.765403 TCTATATAGGCCTAATGCGTGTTTT 58.235 36.000 18.42 0.00 42.61 2.43
706 997 6.354794 TCTATATAGGCCTAATGCGTGTTT 57.645 37.500 18.42 0.00 42.61 2.83
707 998 5.995565 TCTATATAGGCCTAATGCGTGTT 57.004 39.130 18.42 0.00 42.61 3.32
708 999 5.163405 CCATCTATATAGGCCTAATGCGTGT 60.163 44.000 18.42 0.05 42.61 4.49
709 1000 5.069119 TCCATCTATATAGGCCTAATGCGTG 59.931 44.000 18.42 11.36 42.61 5.34
710 1001 5.208890 TCCATCTATATAGGCCTAATGCGT 58.791 41.667 18.42 1.73 42.61 5.24
711 1002 5.791336 TCCATCTATATAGGCCTAATGCG 57.209 43.478 18.42 9.48 42.61 4.73
718 1009 9.512588 CCATCAAATATTCCATCTATATAGGCC 57.487 37.037 9.89 0.00 0.00 5.19
719 1010 9.007901 GCCATCAAATATTCCATCTATATAGGC 57.992 37.037 9.89 0.00 0.00 3.93
722 1013 9.565090 GCAGCCATCAAATATTCCATCTATATA 57.435 33.333 0.00 0.00 0.00 0.86
723 1014 8.280084 AGCAGCCATCAAATATTCCATCTATAT 58.720 33.333 0.00 0.00 0.00 0.86
724 1015 7.555195 CAGCAGCCATCAAATATTCCATCTATA 59.445 37.037 0.00 0.00 0.00 1.31
725 1016 6.377429 CAGCAGCCATCAAATATTCCATCTAT 59.623 38.462 0.00 0.00 0.00 1.98
726 1017 5.708697 CAGCAGCCATCAAATATTCCATCTA 59.291 40.000 0.00 0.00 0.00 1.98
727 1018 4.523173 CAGCAGCCATCAAATATTCCATCT 59.477 41.667 0.00 0.00 0.00 2.90
728 1019 4.521639 TCAGCAGCCATCAAATATTCCATC 59.478 41.667 0.00 0.00 0.00 3.51
729 1020 4.476297 TCAGCAGCCATCAAATATTCCAT 58.524 39.130 0.00 0.00 0.00 3.41
730 1021 3.900971 TCAGCAGCCATCAAATATTCCA 58.099 40.909 0.00 0.00 0.00 3.53
731 1022 4.521639 TGATCAGCAGCCATCAAATATTCC 59.478 41.667 2.62 0.00 0.00 3.01
732 1023 5.335740 CCTGATCAGCAGCCATCAAATATTC 60.336 44.000 17.76 0.00 43.50 1.75
733 1024 4.523173 CCTGATCAGCAGCCATCAAATATT 59.477 41.667 17.76 0.00 43.50 1.28
745 1036 4.172512 AGGCGCCCTGATCAGCAG 62.173 66.667 26.15 11.54 44.49 4.24
766 1057 1.746615 CGACACCATTGAGGCAGGG 60.747 63.158 0.00 0.00 43.14 4.45
770 1061 3.499737 CGGCGACACCATTGAGGC 61.500 66.667 0.00 0.00 43.14 4.70
776 1067 2.684192 TTTCAACCCGGCGACACCAT 62.684 55.000 9.30 0.00 39.03 3.55
817 1114 2.250939 TTGACGCCGCCTGAACTTG 61.251 57.895 0.00 0.00 0.00 3.16
872 1169 6.146673 GGGTATTAAACTATTTATGCGAGCGT 59.853 38.462 0.00 0.00 0.00 5.07
873 1170 6.531439 GGGTATTAAACTATTTATGCGAGCG 58.469 40.000 0.00 0.00 0.00 5.03
874 1171 6.531439 CGGGTATTAAACTATTTATGCGAGC 58.469 40.000 0.00 0.00 0.00 5.03
875 1172 6.401796 GGCGGGTATTAAACTATTTATGCGAG 60.402 42.308 0.00 0.00 0.00 5.03
876 1173 5.409214 GGCGGGTATTAAACTATTTATGCGA 59.591 40.000 0.00 0.00 0.00 5.10
877 1174 5.391203 GGGCGGGTATTAAACTATTTATGCG 60.391 44.000 0.00 0.00 0.00 4.73
919 1238 5.008613 GTGGCTAAATTTCCATCTCGCATTA 59.991 40.000 0.00 0.00 34.47 1.90
949 1268 3.711348 GCTATCCAGCTCGTGTGC 58.289 61.111 0.00 0.00 44.93 4.57
986 2484 0.548510 GCCCATGGCTTCTAGGAACT 59.451 55.000 6.09 0.00 46.69 3.01
987 2485 3.102090 GCCCATGGCTTCTAGGAAC 57.898 57.895 6.09 0.00 46.69 3.62
1033 2531 2.742372 CACCTTCTTCCGCGGTGG 60.742 66.667 27.15 20.89 43.41 4.61
1035 2533 2.920912 TCCACCTTCTTCCGCGGT 60.921 61.111 27.15 0.00 0.00 5.68
1039 2537 0.610687 AGCTTCTCCACCTTCTTCCG 59.389 55.000 0.00 0.00 0.00 4.30
1048 2546 1.216710 CCGTCTCCAGCTTCTCCAC 59.783 63.158 0.00 0.00 0.00 4.02
1120 2618 1.079405 TGGCGATCTTGTTCGGGAC 60.079 57.895 0.00 0.00 39.49 4.46
1123 2621 2.452813 CCGTGGCGATCTTGTTCGG 61.453 63.158 0.00 0.00 39.49 4.30
1124 2622 3.081133 CCGTGGCGATCTTGTTCG 58.919 61.111 0.00 0.00 41.99 3.95
1125 2623 2.785258 GCCGTGGCGATCTTGTTC 59.215 61.111 0.00 0.00 0.00 3.18
1140 2638 2.874780 CAGACGTAGCACGACGCC 60.875 66.667 14.18 0.38 46.05 5.68
1146 2644 1.153745 CTCCAGGCAGACGTAGCAC 60.154 63.158 13.63 4.35 0.00 4.40
1207 2705 3.535691 CGATCCACTCGCTGTAGAC 57.464 57.895 0.00 0.00 41.14 2.59
1356 2857 4.145807 TGAACCCATGGATTTTTGTACGT 58.854 39.130 15.22 0.00 0.00 3.57
1357 2858 4.775058 TGAACCCATGGATTTTTGTACG 57.225 40.909 15.22 0.00 0.00 3.67
1358 2859 5.848406 TGTTGAACCCATGGATTTTTGTAC 58.152 37.500 15.22 0.00 0.00 2.90
1360 2861 5.365021 TTGTTGAACCCATGGATTTTTGT 57.635 34.783 15.22 0.00 0.00 2.83
1361 2862 6.880942 AATTGTTGAACCCATGGATTTTTG 57.119 33.333 15.22 0.00 0.00 2.44
1362 2863 8.217111 AGTTAATTGTTGAACCCATGGATTTTT 58.783 29.630 15.22 0.00 0.00 1.94
1363 2864 7.744733 AGTTAATTGTTGAACCCATGGATTTT 58.255 30.769 15.22 2.77 0.00 1.82
1364 2865 7.315066 AGTTAATTGTTGAACCCATGGATTT 57.685 32.000 15.22 5.70 0.00 2.17
1370 2871 7.453126 TCACCATTAGTTAATTGTTGAACCCAT 59.547 33.333 0.00 0.00 0.00 4.00
1379 2880 8.821686 TGGATCAATCACCATTAGTTAATTGT 57.178 30.769 0.00 0.00 0.00 2.71
1398 2899 1.275856 GCAACCAAGGCAAATGGATCA 59.724 47.619 10.45 0.00 40.56 2.92
1406 2907 1.757731 AGCTGTGCAACCAAGGCAA 60.758 52.632 0.00 0.00 43.91 4.52
1408 2909 1.737355 TTCAGCTGTGCAACCAAGGC 61.737 55.000 14.67 0.00 34.36 4.35
1409 2910 0.746063 TTTCAGCTGTGCAACCAAGG 59.254 50.000 14.67 0.00 34.36 3.61
1423 2924 5.289193 CCATACATTTGCCACGAAATTTCAG 59.711 40.000 17.99 12.49 0.00 3.02
1483 2984 3.202373 AGGGACCTTTCTTATTACTGGGC 59.798 47.826 0.00 0.00 0.00 5.36
1499 3000 3.056328 GCGAGGTTTGCAGGGACC 61.056 66.667 7.65 7.65 36.15 4.46
1524 3025 2.741486 TACAGTCCCTTGTTGCCCGC 62.741 60.000 0.00 0.00 32.56 6.13
1525 3026 0.953960 GTACAGTCCCTTGTTGCCCG 60.954 60.000 0.00 0.00 32.56 6.13
1526 3027 0.109723 TGTACAGTCCCTTGTTGCCC 59.890 55.000 0.00 0.00 32.56 5.36
1527 3028 1.202770 ACTGTACAGTCCCTTGTTGCC 60.203 52.381 22.95 0.00 36.92 4.52
1528 3029 2.256117 ACTGTACAGTCCCTTGTTGC 57.744 50.000 22.95 0.00 36.92 4.17
1529 3030 3.541632 ACAACTGTACAGTCCCTTGTTG 58.458 45.455 28.04 21.42 41.58 3.33
1530 3031 3.433173 GGACAACTGTACAGTCCCTTGTT 60.433 47.826 28.04 12.95 44.72 2.83
1531 3032 2.104281 GGACAACTGTACAGTCCCTTGT 59.896 50.000 28.04 25.91 44.72 3.16
1532 3033 2.767505 GGACAACTGTACAGTCCCTTG 58.232 52.381 28.04 23.09 44.72 3.61
1536 3037 2.521105 AACGGACAACTGTACAGTCC 57.479 50.000 28.04 22.61 46.48 3.85
1537 3038 3.737774 GGTTAACGGACAACTGTACAGTC 59.262 47.826 28.04 16.04 41.58 3.51
1538 3039 3.385755 AGGTTAACGGACAACTGTACAGT 59.614 43.478 22.95 22.95 44.94 3.55
1539 3040 3.739300 CAGGTTAACGGACAACTGTACAG 59.261 47.826 21.44 21.44 34.90 2.74
1540 3041 3.384146 TCAGGTTAACGGACAACTGTACA 59.616 43.478 0.00 0.00 34.90 2.90
1564 3065 5.008811 ACATTACGTAGGTGTAGCATCTCTC 59.991 44.000 12.34 0.00 0.00 3.20
1565 3066 4.888239 ACATTACGTAGGTGTAGCATCTCT 59.112 41.667 12.34 0.00 0.00 3.10
1566 3067 5.184340 ACATTACGTAGGTGTAGCATCTC 57.816 43.478 12.34 0.00 0.00 2.75
1567 3068 5.593679 AACATTACGTAGGTGTAGCATCT 57.406 39.130 13.81 0.00 0.00 2.90
1568 3069 6.040878 AGAAACATTACGTAGGTGTAGCATC 58.959 40.000 13.81 10.69 0.00 3.91
1569 3070 5.974108 AGAAACATTACGTAGGTGTAGCAT 58.026 37.500 13.81 4.27 0.00 3.79
1570 3071 5.047872 TGAGAAACATTACGTAGGTGTAGCA 60.048 40.000 13.81 8.56 0.00 3.49
1571 3072 5.287992 GTGAGAAACATTACGTAGGTGTAGC 59.712 44.000 13.81 9.96 0.00 3.58
1572 3073 5.510674 CGTGAGAAACATTACGTAGGTGTAG 59.489 44.000 13.81 0.00 0.00 2.74
1573 3074 5.048782 ACGTGAGAAACATTACGTAGGTGTA 60.049 40.000 13.81 0.00 46.50 2.90
1574 3075 4.232221 CGTGAGAAACATTACGTAGGTGT 58.768 43.478 9.18 9.18 0.00 4.16
1575 3076 4.232221 ACGTGAGAAACATTACGTAGGTG 58.768 43.478 0.00 8.09 46.50 4.00
1576 3077 4.510038 ACGTGAGAAACATTACGTAGGT 57.490 40.909 0.00 0.00 46.50 3.08
1581 3082 5.634896 AGGTACTACGTGAGAAACATTACG 58.365 41.667 0.00 0.00 41.86 3.18
1582 3083 6.250104 CGAAGGTACTACGTGAGAAACATTAC 59.750 42.308 0.00 0.00 38.49 1.89
1583 3084 6.072508 ACGAAGGTACTACGTGAGAAACATTA 60.073 38.462 0.00 0.00 38.49 1.90
1584 3085 5.159209 CGAAGGTACTACGTGAGAAACATT 58.841 41.667 0.00 1.04 38.49 2.71
1585 3086 4.217118 ACGAAGGTACTACGTGAGAAACAT 59.783 41.667 0.00 0.00 38.49 2.71
1586 3087 3.565482 ACGAAGGTACTACGTGAGAAACA 59.435 43.478 0.00 0.00 38.49 2.83
1587 3088 4.152607 ACGAAGGTACTACGTGAGAAAC 57.847 45.455 0.00 0.00 38.49 2.78
1588 3089 5.163723 CCATACGAAGGTACTACGTGAGAAA 60.164 44.000 17.32 3.63 38.49 2.52
1589 3090 4.333649 CCATACGAAGGTACTACGTGAGAA 59.666 45.833 17.32 3.90 38.49 2.87
1590 3091 3.873361 CCATACGAAGGTACTACGTGAGA 59.127 47.826 17.32 4.16 38.49 3.27
1591 3092 3.624861 ACCATACGAAGGTACTACGTGAG 59.375 47.826 17.32 11.54 38.49 3.51
1592 3093 3.609853 ACCATACGAAGGTACTACGTGA 58.390 45.455 17.32 6.99 38.49 4.35
1593 3094 3.624861 AGACCATACGAAGGTACTACGTG 59.375 47.826 17.32 7.87 38.49 4.49
1594 3095 3.624861 CAGACCATACGAAGGTACTACGT 59.375 47.826 14.14 14.14 38.49 3.57
1595 3096 3.873361 TCAGACCATACGAAGGTACTACG 59.127 47.826 0.00 0.00 38.49 3.51
1596 3097 6.388435 AATCAGACCATACGAAGGTACTAC 57.612 41.667 0.00 0.00 38.49 2.73
1597 3098 6.604396 TCAAATCAGACCATACGAAGGTACTA 59.396 38.462 0.00 0.00 38.49 1.82
1598 3099 6.627508 GTCAAATCAGACCATACGAAGGTACT 60.628 42.308 0.00 0.00 40.09 2.73
1599 3100 5.519206 GTCAAATCAGACCATACGAAGGTAC 59.481 44.000 0.00 0.00 40.09 3.34
1600 3101 5.186215 TGTCAAATCAGACCATACGAAGGTA 59.814 40.000 0.00 0.00 40.09 3.08
1601 3102 4.020573 TGTCAAATCAGACCATACGAAGGT 60.021 41.667 0.00 0.00 43.46 3.50
1602 3103 4.503910 TGTCAAATCAGACCATACGAAGG 58.496 43.478 0.00 0.00 37.73 3.46
1603 3104 5.171476 ACTGTCAAATCAGACCATACGAAG 58.829 41.667 0.00 0.00 37.73 3.79
1604 3105 5.147330 ACTGTCAAATCAGACCATACGAA 57.853 39.130 0.00 0.00 37.73 3.85
1605 3106 4.801330 ACTGTCAAATCAGACCATACGA 57.199 40.909 0.00 0.00 37.73 3.43
1606 3107 5.862924 AAACTGTCAAATCAGACCATACG 57.137 39.130 0.65 0.00 37.73 3.06
1627 3128 6.183360 TGTGCTCAACTAAAGCCCAATAAAAA 60.183 34.615 0.00 0.00 39.05 1.94
1628 3129 5.303078 TGTGCTCAACTAAAGCCCAATAAAA 59.697 36.000 0.00 0.00 39.05 1.52
1629 3130 4.830046 TGTGCTCAACTAAAGCCCAATAAA 59.170 37.500 0.00 0.00 39.05 1.40
1630 3131 4.217550 GTGTGCTCAACTAAAGCCCAATAA 59.782 41.667 0.00 0.00 39.05 1.40
1631 3132 3.756434 GTGTGCTCAACTAAAGCCCAATA 59.244 43.478 0.00 0.00 39.05 1.90
1632 3133 2.558359 GTGTGCTCAACTAAAGCCCAAT 59.442 45.455 0.00 0.00 39.05 3.16
1633 3134 1.953686 GTGTGCTCAACTAAAGCCCAA 59.046 47.619 0.00 0.00 39.05 4.12
1634 3135 1.604604 GTGTGCTCAACTAAAGCCCA 58.395 50.000 0.00 0.00 39.05 5.36
1635 3136 0.517316 CGTGTGCTCAACTAAAGCCC 59.483 55.000 0.00 0.00 39.05 5.19
1636 3137 0.517316 CCGTGTGCTCAACTAAAGCC 59.483 55.000 0.00 0.00 39.05 4.35
1637 3138 0.517316 CCCGTGTGCTCAACTAAAGC 59.483 55.000 0.00 0.00 40.26 3.51
1638 3139 0.517316 GCCCGTGTGCTCAACTAAAG 59.483 55.000 0.00 0.00 0.00 1.85
1639 3140 0.887387 GGCCCGTGTGCTCAACTAAA 60.887 55.000 0.00 0.00 0.00 1.85
1640 3141 1.302192 GGCCCGTGTGCTCAACTAA 60.302 57.895 0.00 0.00 0.00 2.24
1641 3142 2.345991 GGCCCGTGTGCTCAACTA 59.654 61.111 0.00 0.00 0.00 2.24
1642 3143 4.643387 GGGCCCGTGTGCTCAACT 62.643 66.667 5.69 0.00 0.00 3.16
1643 3144 4.947147 TGGGCCCGTGTGCTCAAC 62.947 66.667 19.37 0.00 39.21 3.18
1644 3145 4.641645 CTGGGCCCGTGTGCTCAA 62.642 66.667 19.37 0.00 42.21 3.02
1656 3157 2.418083 CCCGATTTCAAGGCTGGGC 61.418 63.158 0.00 0.00 0.00 5.36
1657 3158 1.754234 CCCCGATTTCAAGGCTGGG 60.754 63.158 0.00 0.00 36.37 4.45
1658 3159 1.754234 CCCCCGATTTCAAGGCTGG 60.754 63.158 0.00 0.00 0.00 4.85
1659 3160 0.611896 AACCCCCGATTTCAAGGCTG 60.612 55.000 0.00 0.00 0.00 4.85
1660 3161 0.996583 TAACCCCCGATTTCAAGGCT 59.003 50.000 0.00 0.00 0.00 4.58
1661 3162 1.842052 TTAACCCCCGATTTCAAGGC 58.158 50.000 0.00 0.00 0.00 4.35
1662 3163 5.067283 CACTAATTAACCCCCGATTTCAAGG 59.933 44.000 0.00 0.00 0.00 3.61
1663 3164 5.067283 CCACTAATTAACCCCCGATTTCAAG 59.933 44.000 0.00 0.00 0.00 3.02
1664 3165 4.951094 CCACTAATTAACCCCCGATTTCAA 59.049 41.667 0.00 0.00 0.00 2.69
1665 3166 4.227754 TCCACTAATTAACCCCCGATTTCA 59.772 41.667 0.00 0.00 0.00 2.69
1666 3167 4.784177 TCCACTAATTAACCCCCGATTTC 58.216 43.478 0.00 0.00 0.00 2.17
1667 3168 4.475747 TCTCCACTAATTAACCCCCGATTT 59.524 41.667 0.00 0.00 0.00 2.17
1668 3169 4.042174 TCTCCACTAATTAACCCCCGATT 58.958 43.478 0.00 0.00 0.00 3.34
1669 3170 3.660959 TCTCCACTAATTAACCCCCGAT 58.339 45.455 0.00 0.00 0.00 4.18
1670 3171 3.119009 TCTCCACTAATTAACCCCCGA 57.881 47.619 0.00 0.00 0.00 5.14
1671 3172 3.433173 CCTTCTCCACTAATTAACCCCCG 60.433 52.174 0.00 0.00 0.00 5.73
1672 3173 3.117625 CCCTTCTCCACTAATTAACCCCC 60.118 52.174 0.00 0.00 0.00 5.40
1673 3174 3.784202 TCCCTTCTCCACTAATTAACCCC 59.216 47.826 0.00 0.00 0.00 4.95
1674 3175 5.045066 AGTTCCCTTCTCCACTAATTAACCC 60.045 44.000 0.00 0.00 0.00 4.11
1675 3176 6.063496 AGTTCCCTTCTCCACTAATTAACC 57.937 41.667 0.00 0.00 0.00 2.85
1676 3177 6.755607 CGTAGTTCCCTTCTCCACTAATTAAC 59.244 42.308 0.00 0.00 0.00 2.01
1677 3178 6.438425 ACGTAGTTCCCTTCTCCACTAATTAA 59.562 38.462 0.00 0.00 37.78 1.40
1678 3179 5.954150 ACGTAGTTCCCTTCTCCACTAATTA 59.046 40.000 0.00 0.00 37.78 1.40
1679 3180 4.776308 ACGTAGTTCCCTTCTCCACTAATT 59.224 41.667 0.00 0.00 37.78 1.40
1680 3181 4.351127 ACGTAGTTCCCTTCTCCACTAAT 58.649 43.478 0.00 0.00 37.78 1.73
1681 3182 3.771216 ACGTAGTTCCCTTCTCCACTAA 58.229 45.455 0.00 0.00 37.78 2.24
1682 3183 3.446442 ACGTAGTTCCCTTCTCCACTA 57.554 47.619 0.00 0.00 37.78 2.74
1683 3184 2.305858 ACGTAGTTCCCTTCTCCACT 57.694 50.000 0.00 0.00 37.78 4.00
1684 3185 2.426381 CCTACGTAGTTCCCTTCTCCAC 59.574 54.545 20.73 0.00 37.78 4.02
1685 3186 2.042162 ACCTACGTAGTTCCCTTCTCCA 59.958 50.000 20.73 0.00 37.78 3.86
1686 3187 2.732763 ACCTACGTAGTTCCCTTCTCC 58.267 52.381 20.73 0.00 37.78 3.71
1687 3188 4.201861 CGTAACCTACGTAGTTCCCTTCTC 60.202 50.000 20.73 1.84 46.41 2.87
1688 3189 3.691609 CGTAACCTACGTAGTTCCCTTCT 59.308 47.826 20.73 0.00 46.41 2.85
1689 3190 4.021191 CGTAACCTACGTAGTTCCCTTC 57.979 50.000 20.73 4.52 46.41 3.46
1701 3202 4.093556 ACGTACTGCTTCTACGTAACCTAC 59.906 45.833 10.91 0.00 46.38 3.18
1702 3203 4.253685 ACGTACTGCTTCTACGTAACCTA 58.746 43.478 10.91 0.00 46.38 3.08
1703 3204 3.077359 ACGTACTGCTTCTACGTAACCT 58.923 45.455 10.91 0.00 46.38 3.50
1704 3205 3.477899 ACGTACTGCTTCTACGTAACC 57.522 47.619 10.91 0.00 46.38 2.85
1705 3206 4.093556 ACCTACGTACTGCTTCTACGTAAC 59.906 45.833 16.59 0.00 46.84 2.50
1706 3207 4.093408 CACCTACGTACTGCTTCTACGTAA 59.907 45.833 16.59 6.62 46.84 3.18
1707 3208 3.618594 CACCTACGTACTGCTTCTACGTA 59.381 47.826 15.63 15.63 46.38 3.57
1709 3210 2.417933 ACACCTACGTACTGCTTCTACG 59.582 50.000 0.00 6.80 42.22 3.51
1710 3211 4.495514 GCTACACCTACGTACTGCTTCTAC 60.496 50.000 0.00 0.00 0.00 2.59
1711 3212 3.624861 GCTACACCTACGTACTGCTTCTA 59.375 47.826 0.00 0.00 0.00 2.10
1712 3213 2.422832 GCTACACCTACGTACTGCTTCT 59.577 50.000 0.00 0.00 0.00 2.85
1713 3214 2.163010 TGCTACACCTACGTACTGCTTC 59.837 50.000 0.00 0.00 0.00 3.86
1714 3215 2.165167 TGCTACACCTACGTACTGCTT 58.835 47.619 0.00 0.00 0.00 3.91
1715 3216 1.830279 TGCTACACCTACGTACTGCT 58.170 50.000 0.00 0.00 0.00 4.24
1716 3217 2.865343 ATGCTACACCTACGTACTGC 57.135 50.000 0.00 0.00 0.00 4.40
1717 3218 6.270815 ACAATAATGCTACACCTACGTACTG 58.729 40.000 0.00 0.00 0.00 2.74
1718 3219 6.461110 ACAATAATGCTACACCTACGTACT 57.539 37.500 0.00 0.00 0.00 2.73
1719 3220 7.168135 GGTTACAATAATGCTACACCTACGTAC 59.832 40.741 0.00 0.00 0.00 3.67
1720 3221 7.068593 AGGTTACAATAATGCTACACCTACGTA 59.931 37.037 0.00 0.00 31.39 3.57
1721 3222 6.044682 GGTTACAATAATGCTACACCTACGT 58.955 40.000 0.00 0.00 0.00 3.57
1722 3223 6.278363 AGGTTACAATAATGCTACACCTACG 58.722 40.000 0.00 0.00 31.39 3.51
1723 3224 7.270047 TGAGGTTACAATAATGCTACACCTAC 58.730 38.462 0.00 0.00 33.40 3.18
1724 3225 7.426606 TGAGGTTACAATAATGCTACACCTA 57.573 36.000 0.00 0.00 33.40 3.08
1725 3226 6.308015 TGAGGTTACAATAATGCTACACCT 57.692 37.500 0.00 0.00 36.06 4.00
1726 3227 6.995511 TTGAGGTTACAATAATGCTACACC 57.004 37.500 0.00 0.00 0.00 4.16
1728 3229 9.845740 ACATATTGAGGTTACAATAATGCTACA 57.154 29.630 0.00 0.00 43.05 2.74
1749 3250 9.684448 CGACAGACATAACTCTCAATTACATAT 57.316 33.333 0.00 0.00 0.00 1.78
1750 3251 8.899771 TCGACAGACATAACTCTCAATTACATA 58.100 33.333 0.00 0.00 0.00 2.29
1751 3252 7.772166 TCGACAGACATAACTCTCAATTACAT 58.228 34.615 0.00 0.00 0.00 2.29
1752 3253 7.153217 TCGACAGACATAACTCTCAATTACA 57.847 36.000 0.00 0.00 0.00 2.41
1753 3254 7.755822 AGTTCGACAGACATAACTCTCAATTAC 59.244 37.037 0.00 0.00 0.00 1.89
1754 3255 7.827701 AGTTCGACAGACATAACTCTCAATTA 58.172 34.615 0.00 0.00 0.00 1.40
1755 3256 6.692486 AGTTCGACAGACATAACTCTCAATT 58.308 36.000 0.00 0.00 0.00 2.32
1756 3257 6.274157 AGTTCGACAGACATAACTCTCAAT 57.726 37.500 0.00 0.00 0.00 2.57
1757 3258 5.707242 AGTTCGACAGACATAACTCTCAA 57.293 39.130 0.00 0.00 0.00 3.02
1758 3259 6.349115 GGTTAGTTCGACAGACATAACTCTCA 60.349 42.308 0.00 0.00 34.23 3.27
1817 3318 7.000472 TCTAAATGCCCTCCAAATATCTTCTG 59.000 38.462 0.00 0.00 0.00 3.02
1863 3364 4.740205 ACGCTATTGTACATCGACTGAATG 59.260 41.667 0.00 0.00 0.00 2.67
1864 3365 4.933330 ACGCTATTGTACATCGACTGAAT 58.067 39.130 0.00 0.00 0.00 2.57
1871 3387 3.834302 CGAACAACGCTATTGTACATCG 58.166 45.455 0.00 6.34 34.51 3.84
1885 3401 0.386731 CCAAATGACCCGCGAACAAC 60.387 55.000 8.23 0.00 0.00 3.32
1893 3409 2.851195 CCTCCTAATCCAAATGACCCG 58.149 52.381 0.00 0.00 0.00 5.28
1896 3412 3.297134 TGGCCTCCTAATCCAAATGAC 57.703 47.619 3.32 0.00 0.00 3.06
1908 3424 4.101448 GCGTGTCCATGGCCTCCT 62.101 66.667 6.96 0.00 0.00 3.69
1921 3441 1.585668 CGCAGTCTTAAGATGAGCGTG 59.414 52.381 26.90 13.44 36.99 5.34
1927 3447 3.932710 TGGTTTAGCGCAGTCTTAAGATG 59.067 43.478 11.47 9.11 0.00 2.90
1948 3468 9.803130 CATGACGCTGATTAACTATTCTATTTG 57.197 33.333 0.00 0.00 0.00 2.32
1950 3470 7.657354 TGCATGACGCTGATTAACTATTCTATT 59.343 33.333 0.00 0.00 43.06 1.73
1951 3471 7.154656 TGCATGACGCTGATTAACTATTCTAT 58.845 34.615 0.00 0.00 43.06 1.98
1952 3472 6.512297 TGCATGACGCTGATTAACTATTCTA 58.488 36.000 0.00 0.00 43.06 2.10
1953 3473 5.359756 TGCATGACGCTGATTAACTATTCT 58.640 37.500 0.00 0.00 43.06 2.40
1954 3474 5.657470 TGCATGACGCTGATTAACTATTC 57.343 39.130 0.00 0.00 43.06 1.75
1962 3482 5.702209 TGTTATCATATGCATGACGCTGATT 59.298 36.000 10.16 0.00 43.89 2.57
1970 3490 6.064735 TGCCCTATGTTATCATATGCATGA 57.935 37.500 10.16 0.00 45.15 3.07
2024 3544 2.304221 ACACCCTGACACTGCTACTA 57.696 50.000 0.00 0.00 0.00 1.82
2071 3591 3.954258 GCTTGGATATGGGCAAAACTACT 59.046 43.478 0.00 0.00 0.00 2.57
2073 3593 3.295973 GGCTTGGATATGGGCAAAACTA 58.704 45.455 0.00 0.00 0.00 2.24
2078 3598 1.232792 GGGGCTTGGATATGGGCAA 59.767 57.895 0.00 0.00 0.00 4.52
2103 3623 5.845985 TCTGAAATTGACTTCTTGCTACG 57.154 39.130 0.00 0.00 0.00 3.51
2105 3625 9.896645 AGAATATCTGAAATTGACTTCTTGCTA 57.103 29.630 0.00 0.00 0.00 3.49
2148 3668 1.335810 TGATCGGTATCGTGCACCTAC 59.664 52.381 12.15 12.88 34.60 3.18
2187 3707 1.524037 TCTAGCTAGGGAGGCTGAGA 58.476 55.000 20.58 0.00 40.52 3.27
2272 3793 2.305009 GGAGGGCCTCAGAAATCAATG 58.695 52.381 33.27 0.00 31.08 2.82
2276 3797 2.514458 TTTGGAGGGCCTCAGAAATC 57.486 50.000 33.27 16.21 34.31 2.17
2313 3834 9.796120 CTTATAATTCCGTTGCCAATTTTCTAA 57.204 29.630 0.00 0.00 0.00 2.10
2321 3842 3.630312 GCCTCTTATAATTCCGTTGCCAA 59.370 43.478 0.00 0.00 0.00 4.52
2328 3849 6.263168 AGTTGAATTGGCCTCTTATAATTCCG 59.737 38.462 16.96 0.00 38.25 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.