Multiple sequence alignment - TraesCS1A01G043600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G043600 chr1A 100.000 4366 0 0 1 4366 24318104 24322469 0.000000e+00 8063.0
1 TraesCS1A01G043600 chr1B 90.556 2806 155 43 832 3574 39577287 39580045 0.000000e+00 3613.0
2 TraesCS1A01G043600 chr1B 86.326 841 94 15 1 829 39576293 39577124 0.000000e+00 896.0
3 TraesCS1A01G043600 chr1B 89.163 406 38 5 3960 4364 624738670 624739070 6.520000e-138 501.0
4 TraesCS1A01G043600 chr1B 93.056 288 10 3 3584 3871 39580140 39580417 3.140000e-111 412.0
5 TraesCS1A01G043600 chr1B 75.931 349 65 9 305 636 633924368 633924714 1.260000e-35 161.0
6 TraesCS1A01G043600 chr1B 77.061 279 53 9 311 582 550376652 550376378 2.720000e-32 150.0
7 TraesCS1A01G043600 chr1D 91.018 2672 137 37 832 3440 23004234 23006865 0.000000e+00 3509.0
8 TraesCS1A01G043600 chr1D 88.138 843 79 15 1 832 23003182 23004014 0.000000e+00 983.0
9 TraesCS1A01G043600 chr1D 89.474 380 25 7 3449 3826 23007411 23007777 2.380000e-127 466.0
10 TraesCS1A01G043600 chr1D 96.809 94 0 1 3869 3959 23008173 23008266 2.100000e-33 154.0
11 TraesCS1A01G043600 chr4D 94.132 409 13 6 3966 4366 21158417 21158012 2.890000e-171 612.0
12 TraesCS1A01G043600 chr4D 93.269 416 13 3 3963 4366 444126487 444126899 2.250000e-167 599.0
13 TraesCS1A01G043600 chr3A 92.619 420 15 7 3960 4366 337445978 337446394 1.350000e-164 590.0
14 TraesCS1A01G043600 chr3A 89.631 434 16 6 3960 4366 531480241 531479810 3.870000e-145 525.0
15 TraesCS1A01G043600 chr3A 74.398 332 57 21 399 706 725108248 725107921 2.760000e-22 117.0
16 TraesCS1A01G043600 chr7D 91.745 424 11 8 3966 4366 185693179 185692757 6.340000e-158 568.0
17 TraesCS1A01G043600 chr7D 79.757 247 45 2 399 640 82608259 82608013 1.610000e-39 174.0
18 TraesCS1A01G043600 chr5B 91.335 427 14 7 3960 4366 242390473 242390050 2.950000e-156 562.0
19 TraesCS1A01G043600 chr2D 91.101 427 14 9 3960 4366 181488321 181488743 1.370000e-154 556.0
20 TraesCS1A01G043600 chr3D 91.045 402 31 4 3965 4364 280894334 280893936 4.970000e-149 538.0
21 TraesCS1A01G043600 chr4B 85.421 439 33 15 3948 4362 419180481 419180912 1.120000e-115 427.0
22 TraesCS1A01G043600 chr7B 84.842 442 39 15 3946 4364 289954925 289954489 1.880000e-113 420.0
23 TraesCS1A01G043600 chr7B 77.684 354 55 16 323 658 528254604 528254951 1.240000e-45 195.0
24 TraesCS1A01G043600 chr7A 83.973 443 36 17 3944 4364 707541470 707541041 4.090000e-105 392.0
25 TraesCS1A01G043600 chr7A 81.071 280 39 12 320 588 686375806 686375530 1.230000e-50 211.0
26 TraesCS1A01G043600 chrUn 83.710 442 38 15 3944 4364 364057631 364057203 1.900000e-103 387.0
27 TraesCS1A01G043600 chrUn 100.000 28 0 0 594 621 313568990 313568963 8.000000e-03 52.8
28 TraesCS1A01G043600 chrUn 100.000 28 0 0 594 621 313572749 313572722 8.000000e-03 52.8
29 TraesCS1A01G043600 chrUn 100.000 28 0 0 594 621 313606570 313606543 8.000000e-03 52.8
30 TraesCS1A01G043600 chr2A 76.923 364 57 20 347 686 717758967 717759327 9.650000e-42 182.0
31 TraesCS1A01G043600 chr2B 79.767 257 37 12 321 567 698031726 698031977 5.810000e-39 172.0
32 TraesCS1A01G043600 chr5D 93.269 104 7 0 3960 4063 450872811 450872708 2.100000e-33 154.0
33 TraesCS1A01G043600 chr6D 76.577 222 37 6 445 652 362853865 362854085 1.660000e-19 108.0
34 TraesCS1A01G043600 chr4A 92.308 39 2 1 748 786 719100344 719100307 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G043600 chr1A 24318104 24322469 4365 False 8063.000000 8063 100.000000 1 4366 1 chr1A.!!$F1 4365
1 TraesCS1A01G043600 chr1B 39576293 39580417 4124 False 1640.333333 3613 89.979333 1 3871 3 chr1B.!!$F3 3870
2 TraesCS1A01G043600 chr1D 23003182 23008266 5084 False 1278.000000 3509 91.359750 1 3959 4 chr1D.!!$F1 3958

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
891 1125 0.333312 AGGTCTCACGGATCACCTCT 59.667 55.0 0.0 0.0 33.76 3.69 F
1429 1686 0.185901 TTCCTTTCCAGTTGCAGGCT 59.814 50.0 0.0 0.0 0.00 4.58 F
2780 3059 0.178767 CACTCTCGGAATGATGCCCA 59.821 55.0 0.0 0.0 0.00 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1904 2161 0.164647 GTGTGCAACTCTCGATGTGC 59.835 55.0 0.0 0.0 38.04 4.57 R
2823 3104 0.320858 TGCATTTTCGCCCGACTGTA 60.321 50.0 0.0 0.0 0.00 2.74 R
3980 5266 0.108709 CCAAACCGATACGAACCCGA 60.109 55.0 0.0 0.0 39.50 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
154 157 4.012374 TCGGAAGGTACACGAGTTATCTT 58.988 43.478 0.00 0.00 32.29 2.40
291 294 8.188799 GCATTTAGTAAGGAGTTAAAATGACCC 58.811 37.037 9.18 0.00 36.77 4.46
306 309 1.690985 ACCCTGAAGCTAGGCCCTC 60.691 63.158 0.00 0.00 36.47 4.30
308 311 2.801631 CCTGAAGCTAGGCCCTCCG 61.802 68.421 0.00 0.00 37.47 4.63
309 312 1.758514 CTGAAGCTAGGCCCTCCGA 60.759 63.158 0.00 0.00 37.47 4.55
361 366 2.121963 ACCCTTGCCAGTGGGAGA 60.122 61.111 12.15 0.00 46.15 3.71
371 376 1.138661 CCAGTGGGAGAGATCTTGCTC 59.861 57.143 0.00 0.00 35.59 4.26
388 394 6.337356 TCTTGCTCCTTTTTAGGTGTTTTTG 58.663 36.000 0.00 0.00 0.00 2.44
404 410 3.974871 TTTTGTGAGTTCGTTTAGGGC 57.025 42.857 0.00 0.00 0.00 5.19
407 413 2.250031 TGTGAGTTCGTTTAGGGCCTA 58.750 47.619 9.81 9.81 0.00 3.93
438 444 3.222354 GAAGACGAGGCGGTGGTGT 62.222 63.158 0.00 0.00 0.00 4.16
464 470 6.190587 CCCTTGAAGATGGAATAAGGTTCTT 58.809 40.000 0.00 0.00 36.92 2.52
476 482 2.189784 GTTCTTCCCGCCTAGCCC 59.810 66.667 0.00 0.00 0.00 5.19
477 483 2.040606 TTCTTCCCGCCTAGCCCT 59.959 61.111 0.00 0.00 0.00 5.19
478 484 2.064581 TTCTTCCCGCCTAGCCCTC 61.065 63.158 0.00 0.00 0.00 4.30
482 488 3.782443 CCCGCCTAGCCCTCGTTT 61.782 66.667 0.00 0.00 0.00 3.60
483 489 2.267961 CCGCCTAGCCCTCGTTTT 59.732 61.111 0.00 0.00 0.00 2.43
485 491 1.079405 CGCCTAGCCCTCGTTTTGA 60.079 57.895 0.00 0.00 0.00 2.69
492 502 2.086869 AGCCCTCGTTTTGATGATGTG 58.913 47.619 0.00 0.00 0.00 3.21
493 503 1.812571 GCCCTCGTTTTGATGATGTGT 59.187 47.619 0.00 0.00 0.00 3.72
504 514 2.498807 ATGATGTGTCATCGTCGGAG 57.501 50.000 5.47 0.00 41.16 4.63
507 517 0.970937 ATGTGTCATCGTCGGAGGGT 60.971 55.000 0.00 0.00 0.00 4.34
518 528 2.750350 GGAGGGTGTGTGGAGGTG 59.250 66.667 0.00 0.00 0.00 4.00
521 531 2.594592 GGGTGTGTGGAGGTGTGC 60.595 66.667 0.00 0.00 0.00 4.57
545 555 1.937391 GCAGATCTTGCGGGATTCG 59.063 57.895 0.00 0.00 44.09 3.34
551 561 3.659089 CTTGCGGGATTCGGTCGGT 62.659 63.158 0.00 0.00 39.69 4.69
555 565 2.777972 CGGGATTCGGTCGGTGCTA 61.778 63.158 0.00 0.00 34.75 3.49
575 585 1.625818 AGTCTTCGGTGGATCTGCTTT 59.374 47.619 0.00 0.00 0.00 3.51
588 598 2.011947 TCTGCTTTGATCCATGCTTCG 58.988 47.619 6.28 0.00 0.00 3.79
591 601 3.342719 TGCTTTGATCCATGCTTCGTTA 58.657 40.909 6.28 0.00 0.00 3.18
592 602 3.947196 TGCTTTGATCCATGCTTCGTTAT 59.053 39.130 6.28 0.00 0.00 1.89
610 620 5.046878 TCGTTATTGTGTCTACAGGTTGGAT 60.047 40.000 0.00 0.00 38.23 3.41
611 621 5.642063 CGTTATTGTGTCTACAGGTTGGATT 59.358 40.000 0.00 0.00 38.23 3.01
615 625 4.894784 TGTGTCTACAGGTTGGATTCTTC 58.105 43.478 0.00 0.00 31.91 2.87
622 632 3.550437 AGGTTGGATTCTTCCGATCTG 57.450 47.619 0.00 0.00 44.15 2.90
634 644 5.254115 TCTTCCGATCTGTACTTCTCTTCA 58.746 41.667 0.00 0.00 0.00 3.02
636 646 6.378564 TCTTCCGATCTGTACTTCTCTTCATT 59.621 38.462 0.00 0.00 0.00 2.57
642 652 5.809001 TCTGTACTTCTCTTCATTGGCAAT 58.191 37.500 6.96 6.96 0.00 3.56
643 653 6.240894 TCTGTACTTCTCTTCATTGGCAATT 58.759 36.000 10.65 0.00 0.00 2.32
644 654 6.149973 TCTGTACTTCTCTTCATTGGCAATTG 59.850 38.462 10.65 0.00 0.00 2.32
645 655 5.769662 TGTACTTCTCTTCATTGGCAATTGT 59.230 36.000 10.65 2.77 0.00 2.71
646 656 5.796424 ACTTCTCTTCATTGGCAATTGTT 57.204 34.783 10.65 0.00 0.00 2.83
650 660 5.291178 TCTCTTCATTGGCAATTGTTGTTG 58.709 37.500 10.65 0.00 0.00 3.33
660 670 4.032786 GGCAATTGTTGTTGTTGTTCTGAC 59.967 41.667 7.40 0.00 0.00 3.51
675 685 4.530857 GACGCGCTGGGCCATAGT 62.531 66.667 6.72 4.71 38.94 2.12
692 702 0.519077 AGTACGACGACTTTCCGACC 59.481 55.000 0.00 0.00 0.00 4.79
695 705 1.370900 CGACGACTTTCCGACCGTT 60.371 57.895 0.00 0.00 35.22 4.44
712 722 1.337074 CGTTTACTACAACAGGCCCGA 60.337 52.381 0.00 0.00 0.00 5.14
719 729 1.374758 CAACAGGCCCGACTCTGAC 60.375 63.158 0.00 0.00 35.20 3.51
732 742 1.075970 TCTGACGAGGGAGGGATGG 60.076 63.158 0.00 0.00 0.00 3.51
737 747 2.786495 CGAGGGAGGGATGGTGACG 61.786 68.421 0.00 0.00 0.00 4.35
771 781 4.577693 TGTAGTCGTCGCTAAATGGTCTAT 59.422 41.667 0.00 0.00 0.00 1.98
774 784 4.278669 AGTCGTCGCTAAATGGTCTATGAT 59.721 41.667 0.00 0.00 0.00 2.45
784 794 7.094506 GCTAAATGGTCTATGATCATGAATGCA 60.095 37.037 18.72 0.00 33.26 3.96
785 795 7.591421 AAATGGTCTATGATCATGAATGCAA 57.409 32.000 18.72 0.00 33.26 4.08
788 798 8.873186 ATGGTCTATGATCATGAATGCAATTA 57.127 30.769 18.72 0.00 36.07 1.40
837 1071 7.039644 ACTGCCATACCATGATAAGTAGTAGAC 60.040 40.741 0.00 0.00 0.00 2.59
843 1077 7.598759 ACCATGATAAGTAGTAGACCGAAAT 57.401 36.000 0.00 0.00 0.00 2.17
846 1080 8.979574 CCATGATAAGTAGTAGACCGAAATTTC 58.020 37.037 8.20 8.20 0.00 2.17
891 1125 0.333312 AGGTCTCACGGATCACCTCT 59.667 55.000 0.00 0.00 33.76 3.69
905 1139 1.150872 ACCTCTAGTCCCCGAGCTAT 58.849 55.000 0.00 0.00 0.00 2.97
915 1151 2.170607 TCCCCGAGCTATGAAAAAGGAG 59.829 50.000 0.00 0.00 0.00 3.69
916 1152 2.565841 CCCGAGCTATGAAAAAGGAGG 58.434 52.381 0.00 0.00 0.00 4.30
917 1153 2.170607 CCCGAGCTATGAAAAAGGAGGA 59.829 50.000 0.00 0.00 0.00 3.71
919 1155 4.261801 CCGAGCTATGAAAAAGGAGGAAA 58.738 43.478 0.00 0.00 0.00 3.13
920 1156 4.700213 CCGAGCTATGAAAAAGGAGGAAAA 59.300 41.667 0.00 0.00 0.00 2.29
921 1157 5.392057 CCGAGCTATGAAAAAGGAGGAAAAC 60.392 44.000 0.00 0.00 0.00 2.43
922 1158 5.181245 CGAGCTATGAAAAAGGAGGAAAACA 59.819 40.000 0.00 0.00 0.00 2.83
923 1159 6.127897 CGAGCTATGAAAAAGGAGGAAAACAT 60.128 38.462 0.00 0.00 0.00 2.71
963 1199 1.131315 GAAAGCATTGGAAGCCGTCTC 59.869 52.381 0.00 0.00 0.00 3.36
1379 1636 1.064389 AGGTAGCTCCTTGATTTGGCC 60.064 52.381 0.00 0.00 45.67 5.36
1402 1659 9.056005 GGCCAATTTTCTGTTTAGATTTCTTTT 57.944 29.630 0.00 0.00 31.81 2.27
1424 1681 2.278332 ACTCCTTCCTTTCCAGTTGC 57.722 50.000 0.00 0.00 0.00 4.17
1429 1686 0.185901 TTCCTTTCCAGTTGCAGGCT 59.814 50.000 0.00 0.00 0.00 4.58
1437 1694 2.305635 TCCAGTTGCAGGCTGAATCTTA 59.694 45.455 20.86 0.00 36.12 2.10
1438 1695 2.681848 CCAGTTGCAGGCTGAATCTTAG 59.318 50.000 20.86 2.34 36.12 2.18
1439 1696 3.603532 CAGTTGCAGGCTGAATCTTAGA 58.396 45.455 20.86 0.00 36.12 2.10
1539 1796 2.751166 AGGGTGTCTGTTCATCGAAG 57.249 50.000 0.00 0.00 0.00 3.79
1552 1809 4.077300 TCATCGAAGATTCAGGATTGGG 57.923 45.455 0.00 0.00 45.12 4.12
1605 1862 3.383505 TGTTCTGTCAAACGAGAGAGGAA 59.616 43.478 0.00 0.00 34.57 3.36
1648 1905 3.078837 GTCGGCCTATTTGTCAGGAAAA 58.921 45.455 0.00 0.00 34.91 2.29
1650 1907 4.157840 GTCGGCCTATTTGTCAGGAAAAAT 59.842 41.667 0.00 3.16 34.91 1.82
1651 1908 5.355910 GTCGGCCTATTTGTCAGGAAAAATA 59.644 40.000 0.00 4.93 34.91 1.40
1652 1909 5.588648 TCGGCCTATTTGTCAGGAAAAATAG 59.411 40.000 18.78 18.78 42.29 1.73
1653 1910 5.592054 GGCCTATTTGTCAGGAAAAATAGC 58.408 41.667 19.74 15.95 41.73 2.97
1654 1911 5.127031 GGCCTATTTGTCAGGAAAAATAGCA 59.873 40.000 19.74 0.00 41.73 3.49
1728 1985 4.389992 ACACGTGATTTCTGTGATAAGCAG 59.610 41.667 25.01 0.00 37.08 4.24
1729 1986 3.372206 ACGTGATTTCTGTGATAAGCAGC 59.628 43.478 0.00 0.00 34.21 5.25
1740 1997 3.061429 GTGATAAGCAGCGAGTTGTTCTC 59.939 47.826 0.00 0.00 39.62 2.87
1753 2010 1.853963 TGTTCTCTCTGGTAGGAGGC 58.146 55.000 0.00 0.00 34.39 4.70
1787 2044 2.634940 TGGAAGGAAACCTCTGAGTCTG 59.365 50.000 3.66 0.00 30.89 3.51
1841 2098 1.374758 CAGGACCCTCAACAGCGTC 60.375 63.158 0.00 0.00 0.00 5.19
1903 2160 2.039405 GCACCTTGGAGCAGCTGAG 61.039 63.158 20.43 4.99 0.00 3.35
1904 2161 1.376942 CACCTTGGAGCAGCTGAGG 60.377 63.158 20.43 17.26 0.00 3.86
1910 2167 1.818785 GGAGCAGCTGAGGCACATC 60.819 63.158 20.43 2.70 41.70 3.06
1961 2227 3.365767 GGAGCAACTCATCTTCTTTGCAC 60.366 47.826 7.80 1.50 45.54 4.57
1973 2239 5.423015 TCTTCTTTGCACATCTATCAGGAC 58.577 41.667 0.00 0.00 0.00 3.85
1980 2246 3.062639 GCACATCTATCAGGACGTGTTTG 59.937 47.826 0.00 0.00 0.00 2.93
1987 2253 5.995282 TCTATCAGGACGTGTTTGTGATTTT 59.005 36.000 0.00 0.00 0.00 1.82
1999 2265 7.196331 GTGTTTGTGATTTTTACTCTTCTGCT 58.804 34.615 0.00 0.00 0.00 4.24
2072 2338 2.257371 CGCGAGTTCGGTGAGGAA 59.743 61.111 0.00 0.00 40.23 3.36
2109 2375 5.494724 CCATCAAGAGAATGAAGGAGAACA 58.505 41.667 0.00 0.00 39.90 3.18
2165 2435 9.220767 GAGGTACAATGATTCTCTAGTTGTTTT 57.779 33.333 0.00 0.00 35.01 2.43
2177 2449 7.952671 TCTCTAGTTGTTTTCTCTTCTTGCTA 58.047 34.615 0.00 0.00 0.00 3.49
2187 2459 4.748892 TCTCTTCTTGCTATCTGTTTCGG 58.251 43.478 0.00 0.00 0.00 4.30
2285 2562 1.537202 GTTGAAGCAAGAATGTCGGCT 59.463 47.619 0.00 0.00 34.30 5.52
2340 2617 3.701040 TGGTAAGTAGATCGGTTGGGTAC 59.299 47.826 0.00 0.00 0.00 3.34
2366 2643 5.412640 CATGACACCTATAACGTACCAACA 58.587 41.667 0.00 0.00 0.00 3.33
2372 2649 9.748708 GACACCTATAACGTACCAACATTTATA 57.251 33.333 0.00 0.00 0.00 0.98
2558 2837 1.997606 GTTTGTACGAAGATCCCACCG 59.002 52.381 0.00 0.00 0.00 4.94
2595 2874 1.753903 TTGGGGAGGTGATTTCCTGA 58.246 50.000 0.00 0.00 38.02 3.86
2609 2888 2.568623 TCCTGACCCTTTTTCTGCTC 57.431 50.000 0.00 0.00 0.00 4.26
2620 2899 3.610040 TTTTCTGCTCTATTCTCGCCA 57.390 42.857 0.00 0.00 0.00 5.69
2660 2939 8.477419 TTTCCACTTTTCCAGTTTCTGATAAT 57.523 30.769 0.00 0.00 30.92 1.28
2697 2976 0.835941 AAGTGGATCCAGCAGCCTAG 59.164 55.000 16.81 0.00 0.00 3.02
2755 3034 0.987294 AGGATGGAGGTTGACAGGTG 59.013 55.000 0.00 0.00 0.00 4.00
2767 3046 4.381079 GGTTGACAGGTGACTATCACTCTC 60.381 50.000 8.75 2.59 45.25 3.20
2777 3056 4.233789 GACTATCACTCTCGGAATGATGC 58.766 47.826 7.73 0.00 34.86 3.91
2780 3059 0.178767 CACTCTCGGAATGATGCCCA 59.821 55.000 0.00 0.00 0.00 5.36
2787 3066 2.557924 TCGGAATGATGCCCATAAATGC 59.442 45.455 0.00 0.00 34.45 3.56
2788 3067 2.559668 CGGAATGATGCCCATAAATGCT 59.440 45.455 0.00 0.00 34.45 3.79
2790 3069 3.575256 GGAATGATGCCCATAAATGCTCA 59.425 43.478 0.00 0.00 34.45 4.26
2791 3070 4.039488 GGAATGATGCCCATAAATGCTCAA 59.961 41.667 0.00 0.00 34.45 3.02
2792 3071 5.453621 GGAATGATGCCCATAAATGCTCAAA 60.454 40.000 0.00 0.00 34.45 2.69
2793 3072 4.659111 TGATGCCCATAAATGCTCAAAG 57.341 40.909 0.00 0.00 0.00 2.77
2794 3073 4.025360 TGATGCCCATAAATGCTCAAAGT 58.975 39.130 0.00 0.00 0.00 2.66
2795 3074 5.199723 TGATGCCCATAAATGCTCAAAGTA 58.800 37.500 0.00 0.00 0.00 2.24
2796 3075 5.834742 TGATGCCCATAAATGCTCAAAGTAT 59.165 36.000 0.00 0.00 0.00 2.12
2797 3076 5.772825 TGCCCATAAATGCTCAAAGTATC 57.227 39.130 0.00 0.00 0.00 2.24
2798 3077 4.275689 TGCCCATAAATGCTCAAAGTATCG 59.724 41.667 0.00 0.00 0.00 2.92
2799 3078 4.275936 GCCCATAAATGCTCAAAGTATCGT 59.724 41.667 0.00 0.00 0.00 3.73
2803 3082 8.402472 CCCATAAATGCTCAAAGTATCGTTTAA 58.598 33.333 0.00 0.00 0.00 1.52
2865 3146 2.421424 GCTGCTATCCAAAGGAACACTG 59.579 50.000 0.00 0.00 34.34 3.66
2903 3184 2.939782 GCAATGCGCTCTCATGTTG 58.060 52.632 9.73 3.75 37.77 3.33
2914 3195 4.053295 GCTCTCATGTTGCACAATTTTGT 58.947 39.130 0.00 0.00 43.36 2.83
2922 3203 7.493645 TCATGTTGCACAATTTTGTCACAAATA 59.506 29.630 3.17 0.00 39.91 1.40
2959 3240 3.157087 TCCTTCAATCCCTTGCAGTTTC 58.843 45.455 0.00 0.00 32.11 2.78
2971 3252 4.261197 CCTTGCAGTTTCTACCTTTCACAC 60.261 45.833 0.00 0.00 0.00 3.82
2985 3266 6.827727 ACCTTTCACACTGTATCAGTAAACT 58.172 36.000 2.03 0.00 43.43 2.66
3101 3382 3.343617 ACGATAACCATCACCAAACCAG 58.656 45.455 0.00 0.00 0.00 4.00
3102 3383 3.244770 ACGATAACCATCACCAAACCAGT 60.245 43.478 0.00 0.00 0.00 4.00
3118 3399 2.671963 GTTGGTCCGAACAGGCCC 60.672 66.667 0.00 0.00 38.89 5.80
3212 3494 0.658244 CCATGATTGCGCGGAAATCG 60.658 55.000 19.18 6.30 36.93 3.34
3214 3496 1.260297 CATGATTGCGCGGAAATCGTA 59.740 47.619 19.18 2.44 41.72 3.43
3215 3497 0.927537 TGATTGCGCGGAAATCGTAG 59.072 50.000 19.18 0.00 41.72 3.51
3232 3532 3.322541 TCGTAGTTCCTGTGGACATTCAA 59.677 43.478 0.00 0.00 0.00 2.69
3371 3675 6.403049 TCAAATCATTGAAATGCATGAGCTT 58.597 32.000 0.00 0.00 42.47 3.74
3372 3676 6.533723 TCAAATCATTGAAATGCATGAGCTTC 59.466 34.615 0.00 0.27 42.47 3.86
3373 3677 4.023739 TCATTGAAATGCATGAGCTTCG 57.976 40.909 0.00 0.00 42.74 3.79
3376 3680 3.752412 TGAAATGCATGAGCTTCGAAG 57.248 42.857 21.02 21.02 42.74 3.79
3457 4298 1.363443 GCCATCTCGAGCTCTCCTG 59.637 63.158 12.85 3.99 0.00 3.86
3574 4415 4.802876 GCAGCTAGCTTATCGATTTGTT 57.197 40.909 16.46 0.00 41.15 2.83
3575 4416 4.767075 GCAGCTAGCTTATCGATTTGTTC 58.233 43.478 16.46 0.00 41.15 3.18
3578 4419 8.864181 GCAGCTAGCTTATCGATTTGTTCGTG 62.864 46.154 16.46 0.00 43.77 4.35
3596 4522 4.224433 TCGTGAAACAGTATCTGACGAAC 58.776 43.478 3.70 0.00 35.30 3.95
3617 4543 5.913137 ACTAAGTCTCCATCTGAGTTCAG 57.087 43.478 2.69 2.69 45.08 3.02
3641 4567 4.644685 AGTGTTGGCAGTGTCTAAAACAAT 59.355 37.500 1.12 0.00 40.31 2.71
3672 4601 8.196103 ACCTTAATAAGTAGTAGTACTTGCTGC 58.804 37.037 26.52 3.95 46.91 5.25
3745 4674 6.877855 GTGGTGATGCATACTGATCAAGATAT 59.122 38.462 0.00 0.00 30.45 1.63
3761 4690 1.271656 GATATCTGCAGCCATTTGCCC 59.728 52.381 9.47 0.00 43.43 5.36
3762 4691 0.033306 TATCTGCAGCCATTTGCCCA 60.033 50.000 9.47 0.00 43.43 5.36
3763 4692 1.327690 ATCTGCAGCCATTTGCCCAG 61.328 55.000 9.47 0.00 43.43 4.45
3764 4693 3.659089 CTGCAGCCATTTGCCCAGC 62.659 63.158 0.00 0.00 43.43 4.85
3765 4694 3.387947 GCAGCCATTTGCCCAGCT 61.388 61.111 0.00 0.00 42.71 4.24
3766 4695 2.053865 GCAGCCATTTGCCCAGCTA 61.054 57.895 0.00 0.00 42.71 3.32
3848 4882 1.834263 GTAGAGGGTGGTCAATGCTCT 59.166 52.381 0.00 0.00 0.00 4.09
3959 5245 9.121517 CAATAAACATGACATTGAGTTTCAGAC 57.878 33.333 0.00 0.00 35.90 3.51
3960 5246 6.698008 AAACATGACATTGAGTTTCAGACA 57.302 33.333 0.00 0.00 28.81 3.41
3961 5247 6.698008 AACATGACATTGAGTTTCAGACAA 57.302 33.333 0.00 0.00 0.00 3.18
3962 5248 6.309712 ACATGACATTGAGTTTCAGACAAG 57.690 37.500 0.00 0.00 0.00 3.16
3963 5249 4.818534 TGACATTGAGTTTCAGACAAGC 57.181 40.909 0.00 0.00 0.00 4.01
3964 5250 4.454678 TGACATTGAGTTTCAGACAAGCT 58.545 39.130 0.00 0.00 0.00 3.74
3965 5251 4.883585 TGACATTGAGTTTCAGACAAGCTT 59.116 37.500 0.00 0.00 0.00 3.74
3966 5252 5.008019 TGACATTGAGTTTCAGACAAGCTTC 59.992 40.000 0.00 0.00 0.00 3.86
3967 5253 4.883585 ACATTGAGTTTCAGACAAGCTTCA 59.116 37.500 0.00 0.00 0.00 3.02
3968 5254 5.357878 ACATTGAGTTTCAGACAAGCTTCAA 59.642 36.000 0.00 0.00 0.00 2.69
3969 5255 5.895636 TTGAGTTTCAGACAAGCTTCAAA 57.104 34.783 0.00 0.00 0.00 2.69
3970 5256 5.895636 TGAGTTTCAGACAAGCTTCAAAA 57.104 34.783 0.00 0.00 0.00 2.44
3971 5257 6.455360 TGAGTTTCAGACAAGCTTCAAAAT 57.545 33.333 0.00 0.00 0.00 1.82
3972 5258 7.566760 TGAGTTTCAGACAAGCTTCAAAATA 57.433 32.000 0.00 0.00 0.00 1.40
3973 5259 8.169977 TGAGTTTCAGACAAGCTTCAAAATAT 57.830 30.769 0.00 0.00 0.00 1.28
3974 5260 8.292448 TGAGTTTCAGACAAGCTTCAAAATATC 58.708 33.333 0.00 0.00 0.00 1.63
3975 5261 7.301054 AGTTTCAGACAAGCTTCAAAATATCG 58.699 34.615 0.00 0.00 0.00 2.92
3976 5262 5.801350 TCAGACAAGCTTCAAAATATCGG 57.199 39.130 0.00 0.00 0.00 4.18
3977 5263 5.487433 TCAGACAAGCTTCAAAATATCGGA 58.513 37.500 0.00 0.00 0.00 4.55
3978 5264 6.115446 TCAGACAAGCTTCAAAATATCGGAT 58.885 36.000 0.00 0.00 0.00 4.18
3979 5265 7.272244 TCAGACAAGCTTCAAAATATCGGATA 58.728 34.615 0.00 0.00 0.00 2.59
3980 5266 7.933577 TCAGACAAGCTTCAAAATATCGGATAT 59.066 33.333 4.66 4.66 0.00 1.63
3981 5267 8.226448 CAGACAAGCTTCAAAATATCGGATATC 58.774 37.037 10.77 0.00 0.00 1.63
3982 5268 7.116948 AGACAAGCTTCAAAATATCGGATATCG 59.883 37.037 10.77 3.89 40.90 2.92
3983 5269 6.147821 ACAAGCTTCAAAATATCGGATATCGG 59.852 38.462 10.77 3.94 39.77 4.18
3984 5270 5.178797 AGCTTCAAAATATCGGATATCGGG 58.821 41.667 10.77 4.23 39.77 5.14
3985 5271 4.935808 GCTTCAAAATATCGGATATCGGGT 59.064 41.667 10.77 5.90 39.77 5.28
3986 5272 5.411669 GCTTCAAAATATCGGATATCGGGTT 59.588 40.000 10.77 0.00 39.77 4.11
3987 5273 6.402226 GCTTCAAAATATCGGATATCGGGTTC 60.402 42.308 10.77 0.00 39.77 3.62
3988 5274 5.165676 TCAAAATATCGGATATCGGGTTCG 58.834 41.667 10.77 1.61 39.77 3.95
3989 5275 4.796038 AAATATCGGATATCGGGTTCGT 57.204 40.909 10.77 0.00 39.77 3.85
3990 5276 5.902613 AAATATCGGATATCGGGTTCGTA 57.097 39.130 10.77 0.00 39.77 3.43
3991 5277 6.461110 AAATATCGGATATCGGGTTCGTAT 57.539 37.500 10.77 0.00 39.77 3.06
3992 5278 5.686159 ATATCGGATATCGGGTTCGTATC 57.314 43.478 10.11 0.00 39.77 2.24
3993 5279 1.733912 TCGGATATCGGGTTCGTATCG 59.266 52.381 10.11 0.00 39.77 2.92
3994 5280 1.202110 CGGATATCGGGTTCGTATCGG 60.202 57.143 2.40 0.00 37.69 4.18
3995 5281 1.815003 GGATATCGGGTTCGTATCGGT 59.185 52.381 0.00 0.00 37.69 4.69
3996 5282 2.229784 GGATATCGGGTTCGTATCGGTT 59.770 50.000 0.00 0.00 37.69 4.44
3997 5283 3.305608 GGATATCGGGTTCGTATCGGTTT 60.306 47.826 0.00 0.00 37.69 3.27
3998 5284 1.930567 ATCGGGTTCGTATCGGTTTG 58.069 50.000 0.00 0.00 37.69 2.93
3999 5285 0.108709 TCGGGTTCGTATCGGTTTGG 60.109 55.000 0.00 0.00 37.69 3.28
4000 5286 1.698714 CGGGTTCGTATCGGTTTGGC 61.699 60.000 0.00 0.00 0.00 4.52
4001 5287 0.392060 GGGTTCGTATCGGTTTGGCT 60.392 55.000 0.00 0.00 0.00 4.75
4002 5288 1.445871 GGTTCGTATCGGTTTGGCTT 58.554 50.000 0.00 0.00 0.00 4.35
4003 5289 1.395954 GGTTCGTATCGGTTTGGCTTC 59.604 52.381 0.00 0.00 0.00 3.86
4004 5290 1.060122 GTTCGTATCGGTTTGGCTTCG 59.940 52.381 0.00 0.00 0.00 3.79
4005 5291 0.527113 TCGTATCGGTTTGGCTTCGA 59.473 50.000 0.00 0.00 37.33 3.71
4006 5292 0.643820 CGTATCGGTTTGGCTTCGAC 59.356 55.000 0.00 0.00 35.70 4.20
4007 5293 1.717194 GTATCGGTTTGGCTTCGACA 58.283 50.000 0.00 0.00 35.70 4.35
4008 5294 2.277084 GTATCGGTTTGGCTTCGACAT 58.723 47.619 0.00 0.00 35.70 3.06
4009 5295 2.684001 ATCGGTTTGGCTTCGACATA 57.316 45.000 0.00 0.00 35.70 2.29
4010 5296 2.684001 TCGGTTTGGCTTCGACATAT 57.316 45.000 0.00 0.00 0.00 1.78
4011 5297 2.546778 TCGGTTTGGCTTCGACATATC 58.453 47.619 0.00 0.00 0.00 1.63
4026 5312 5.551893 CGACATATCGGATATCGGATATCG 58.448 45.833 29.28 27.27 42.93 2.92
4040 5326 5.850614 TCGGATATCGAGTGATATATCGGA 58.149 41.667 8.19 7.32 45.66 4.55
4041 5327 5.927115 TCGGATATCGAGTGATATATCGGAG 59.073 44.000 8.19 0.50 45.66 4.63
4042 5328 5.927115 CGGATATCGAGTGATATATCGGAGA 59.073 44.000 8.19 5.56 45.66 3.71
4043 5329 6.424207 CGGATATCGAGTGATATATCGGAGAA 59.576 42.308 8.19 0.00 45.66 2.87
4044 5330 7.041984 CGGATATCGAGTGATATATCGGAGAAA 60.042 40.741 8.19 0.00 45.66 2.52
4045 5331 8.071368 GGATATCGAGTGATATATCGGAGAAAC 58.929 40.741 8.19 0.00 45.66 2.78
4046 5332 5.624344 TCGAGTGATATATCGGAGAAACC 57.376 43.478 8.19 0.00 43.58 3.27
4047 5333 5.067954 TCGAGTGATATATCGGAGAAACCA 58.932 41.667 8.19 0.00 43.58 3.67
4048 5334 5.533528 TCGAGTGATATATCGGAGAAACCAA 59.466 40.000 8.19 0.00 43.58 3.67
4049 5335 5.859114 CGAGTGATATATCGGAGAAACCAAG 59.141 44.000 8.19 0.00 43.58 3.61
4050 5336 6.515200 CGAGTGATATATCGGAGAAACCAAGT 60.515 42.308 8.19 0.00 43.58 3.16
4051 5337 6.750148 AGTGATATATCGGAGAAACCAAGTC 58.250 40.000 8.19 0.00 43.58 3.01
4052 5338 6.551601 AGTGATATATCGGAGAAACCAAGTCT 59.448 38.462 8.19 0.00 43.58 3.24
4053 5339 7.724506 AGTGATATATCGGAGAAACCAAGTCTA 59.275 37.037 8.19 0.00 43.58 2.59
4054 5340 8.024285 GTGATATATCGGAGAAACCAAGTCTAG 58.976 40.741 8.19 0.00 43.58 2.43
4055 5341 7.724506 TGATATATCGGAGAAACCAAGTCTAGT 59.275 37.037 8.19 0.00 43.58 2.57
4056 5342 6.793505 ATATCGGAGAAACCAAGTCTAGTT 57.206 37.500 0.00 0.00 43.58 2.24
4057 5343 4.950205 TCGGAGAAACCAAGTCTAGTTT 57.050 40.909 1.53 1.53 38.85 2.66
4058 5344 5.286267 TCGGAGAAACCAAGTCTAGTTTT 57.714 39.130 3.21 0.00 36.36 2.43
4059 5345 5.677567 TCGGAGAAACCAAGTCTAGTTTTT 58.322 37.500 3.21 0.00 36.36 1.94
4094 5380 9.921637 TTCTTGTTCAAAACATTCACTTTTAGT 57.078 25.926 0.00 0.00 41.79 2.24
4133 5419 8.565896 TGATCTCAATGCTTTAACATAACACT 57.434 30.769 0.00 0.00 0.00 3.55
4134 5420 9.013229 TGATCTCAATGCTTTAACATAACACTT 57.987 29.630 0.00 0.00 0.00 3.16
4135 5421 9.846248 GATCTCAATGCTTTAACATAACACTTT 57.154 29.630 0.00 0.00 0.00 2.66
4190 5476 7.554959 AGAAACTAATAAGGAAGGACTCACA 57.445 36.000 0.00 0.00 0.00 3.58
4191 5477 7.974504 AGAAACTAATAAGGAAGGACTCACAA 58.025 34.615 0.00 0.00 0.00 3.33
4192 5478 8.437575 AGAAACTAATAAGGAAGGACTCACAAA 58.562 33.333 0.00 0.00 0.00 2.83
4193 5479 8.990163 AAACTAATAAGGAAGGACTCACAAAA 57.010 30.769 0.00 0.00 0.00 2.44
4194 5480 9.588096 AAACTAATAAGGAAGGACTCACAAAAT 57.412 29.630 0.00 0.00 0.00 1.82
4195 5481 8.794335 ACTAATAAGGAAGGACTCACAAAATC 57.206 34.615 0.00 0.00 0.00 2.17
4196 5482 7.829706 ACTAATAAGGAAGGACTCACAAAATCC 59.170 37.037 0.00 0.00 0.00 3.01
4197 5483 4.731313 AAGGAAGGACTCACAAAATCCT 57.269 40.909 0.00 0.00 45.08 3.24
4203 5489 5.167303 AGGACTCACAAAATCCTTACTCC 57.833 43.478 0.00 0.00 40.03 3.85
4204 5490 4.597507 AGGACTCACAAAATCCTTACTCCA 59.402 41.667 0.00 0.00 40.03 3.86
4205 5491 5.251700 AGGACTCACAAAATCCTTACTCCAT 59.748 40.000 0.00 0.00 40.03 3.41
4206 5492 5.355350 GGACTCACAAAATCCTTACTCCATG 59.645 44.000 0.00 0.00 0.00 3.66
4207 5493 6.126863 ACTCACAAAATCCTTACTCCATGA 57.873 37.500 0.00 0.00 0.00 3.07
4208 5494 6.725364 ACTCACAAAATCCTTACTCCATGAT 58.275 36.000 0.00 0.00 0.00 2.45
4209 5495 7.177878 ACTCACAAAATCCTTACTCCATGATT 58.822 34.615 0.00 0.00 0.00 2.57
4210 5496 8.328758 ACTCACAAAATCCTTACTCCATGATTA 58.671 33.333 0.00 0.00 0.00 1.75
4211 5497 9.177608 CTCACAAAATCCTTACTCCATGATTAA 57.822 33.333 0.00 0.00 0.00 1.40
4212 5498 9.527157 TCACAAAATCCTTACTCCATGATTAAA 57.473 29.630 0.00 0.00 0.00 1.52
4221 5507 9.716507 CCTTACTCCATGATTAAAAACAATACG 57.283 33.333 0.00 0.00 0.00 3.06
4251 5537 5.903764 TGCATTTGTACAAAACATTCTGC 57.096 34.783 25.03 25.03 38.10 4.26
4252 5538 5.354767 TGCATTTGTACAAAACATTCTGCA 58.645 33.333 28.26 28.26 41.19 4.41
4253 5539 5.990386 TGCATTTGTACAAAACATTCTGCAT 59.010 32.000 28.26 8.80 39.85 3.96
4254 5540 6.073711 TGCATTTGTACAAAACATTCTGCATG 60.074 34.615 28.26 18.30 39.85 4.06
4255 5541 6.145858 GCATTTGTACAAAACATTCTGCATGA 59.854 34.615 26.07 4.00 38.10 3.07
4256 5542 7.503991 CATTTGTACAAAACATTCTGCATGAC 58.496 34.615 23.97 0.00 38.10 3.06
4257 5543 6.389830 TTGTACAAAACATTCTGCATGACT 57.610 33.333 5.64 0.00 38.10 3.41
4258 5544 6.389830 TGTACAAAACATTCTGCATGACTT 57.610 33.333 0.00 0.00 36.24 3.01
4259 5545 6.804677 TGTACAAAACATTCTGCATGACTTT 58.195 32.000 0.00 0.00 36.24 2.66
4260 5546 6.696583 TGTACAAAACATTCTGCATGACTTTG 59.303 34.615 0.00 13.35 40.87 2.77
4261 5547 5.904941 ACAAAACATTCTGCATGACTTTGA 58.095 33.333 18.15 0.00 39.29 2.69
4262 5548 6.518493 ACAAAACATTCTGCATGACTTTGAT 58.482 32.000 18.15 7.25 39.29 2.57
4263 5549 7.660112 ACAAAACATTCTGCATGACTTTGATA 58.340 30.769 18.15 0.00 39.29 2.15
4264 5550 8.143193 ACAAAACATTCTGCATGACTTTGATAA 58.857 29.630 18.15 0.00 39.29 1.75
4265 5551 9.146984 CAAAACATTCTGCATGACTTTGATAAT 57.853 29.630 0.00 0.00 39.29 1.28
4292 5578 9.882996 ATATAATGAAGTTGTGAACGCATAATG 57.117 29.630 0.00 0.00 33.22 1.90
4293 5579 3.820689 TGAAGTTGTGAACGCATAATGC 58.179 40.909 0.00 0.00 40.69 3.56
4294 5580 3.501828 TGAAGTTGTGAACGCATAATGCT 59.498 39.130 0.00 0.00 42.25 3.79
4295 5581 4.693095 TGAAGTTGTGAACGCATAATGCTA 59.307 37.500 0.00 0.00 42.25 3.49
4296 5582 5.353956 TGAAGTTGTGAACGCATAATGCTAT 59.646 36.000 0.00 0.00 42.25 2.97
4297 5583 5.818136 AGTTGTGAACGCATAATGCTATT 57.182 34.783 0.00 0.00 42.25 1.73
4298 5584 6.194796 AGTTGTGAACGCATAATGCTATTT 57.805 33.333 0.00 0.00 42.25 1.40
4299 5585 6.258160 AGTTGTGAACGCATAATGCTATTTC 58.742 36.000 0.00 0.00 42.25 2.17
4300 5586 5.809719 TGTGAACGCATAATGCTATTTCA 57.190 34.783 0.00 0.00 42.25 2.69
4301 5587 5.568482 TGTGAACGCATAATGCTATTTCAC 58.432 37.500 16.16 16.16 45.36 3.18
4302 5588 5.353956 TGTGAACGCATAATGCTATTTCACT 59.646 36.000 20.38 0.00 45.37 3.41
4303 5589 5.678483 GTGAACGCATAATGCTATTTCACTG 59.322 40.000 15.91 0.00 43.78 3.66
4304 5590 4.214980 ACGCATAATGCTATTTCACTGC 57.785 40.909 0.00 0.00 42.25 4.40
4305 5591 3.879295 ACGCATAATGCTATTTCACTGCT 59.121 39.130 0.00 0.00 42.25 4.24
4306 5592 4.336433 ACGCATAATGCTATTTCACTGCTT 59.664 37.500 0.00 0.00 42.25 3.91
4307 5593 5.163622 ACGCATAATGCTATTTCACTGCTTT 60.164 36.000 0.00 0.00 42.25 3.51
4308 5594 5.397534 CGCATAATGCTATTTCACTGCTTTC 59.602 40.000 0.00 0.00 42.25 2.62
4309 5595 6.501781 GCATAATGCTATTTCACTGCTTTCT 58.498 36.000 0.00 0.00 40.96 2.52
4310 5596 7.518848 CGCATAATGCTATTTCACTGCTTTCTA 60.519 37.037 0.00 0.00 42.25 2.10
4311 5597 8.131100 GCATAATGCTATTTCACTGCTTTCTAA 58.869 33.333 0.00 0.00 40.96 2.10
4341 5627 7.591006 AAAATTGTTGTCATCTACGTATCGT 57.409 32.000 0.00 0.00 44.35 3.73
4342 5628 7.591006 AAATTGTTGTCATCTACGTATCGTT 57.409 32.000 0.00 0.00 41.54 3.85
4343 5629 6.807708 ATTGTTGTCATCTACGTATCGTTC 57.192 37.500 0.00 0.00 41.54 3.95
4344 5630 5.556355 TGTTGTCATCTACGTATCGTTCT 57.444 39.130 0.00 0.00 41.54 3.01
4345 5631 6.667007 TGTTGTCATCTACGTATCGTTCTA 57.333 37.500 0.00 0.00 41.54 2.10
4346 5632 7.255491 TGTTGTCATCTACGTATCGTTCTAT 57.745 36.000 0.00 0.00 41.54 1.98
4347 5633 8.369218 TGTTGTCATCTACGTATCGTTCTATA 57.631 34.615 0.00 0.00 41.54 1.31
4348 5634 8.278408 TGTTGTCATCTACGTATCGTTCTATAC 58.722 37.037 0.00 0.00 41.54 1.47
4349 5635 7.356641 TGTCATCTACGTATCGTTCTATACC 57.643 40.000 0.00 0.00 41.54 2.73
4350 5636 6.089954 TGTCATCTACGTATCGTTCTATACCG 59.910 42.308 0.00 0.00 41.54 4.02
4351 5637 5.578336 TCATCTACGTATCGTTCTATACCGG 59.422 44.000 0.00 0.00 41.54 5.28
4352 5638 4.883083 TCTACGTATCGTTCTATACCGGT 58.117 43.478 13.98 13.98 41.54 5.28
4353 5639 3.885484 ACGTATCGTTCTATACCGGTG 57.115 47.619 19.93 0.00 36.35 4.94
4354 5640 2.549754 ACGTATCGTTCTATACCGGTGG 59.450 50.000 19.93 7.56 36.35 4.61
4355 5641 2.807967 CGTATCGTTCTATACCGGTGGA 59.192 50.000 19.93 10.04 0.00 4.02
4356 5642 3.364366 CGTATCGTTCTATACCGGTGGAC 60.364 52.174 19.93 4.28 0.00 4.02
4357 5643 2.127271 TCGTTCTATACCGGTGGACA 57.873 50.000 19.93 0.00 0.00 4.02
4358 5644 2.658285 TCGTTCTATACCGGTGGACAT 58.342 47.619 19.93 4.86 0.00 3.06
4359 5645 3.819368 TCGTTCTATACCGGTGGACATA 58.181 45.455 19.93 5.94 0.00 2.29
4360 5646 4.401022 TCGTTCTATACCGGTGGACATAT 58.599 43.478 19.93 3.55 0.00 1.78
4361 5647 4.456911 TCGTTCTATACCGGTGGACATATC 59.543 45.833 19.93 0.00 0.00 1.63
4362 5648 4.670992 CGTTCTATACCGGTGGACATATCG 60.671 50.000 19.93 8.77 0.00 2.92
4363 5649 3.349927 TCTATACCGGTGGACATATCGG 58.650 50.000 19.93 0.00 46.95 4.18
4364 5650 2.297698 ATACCGGTGGACATATCGGA 57.702 50.000 19.93 0.00 44.69 4.55
4365 5651 1.321474 TACCGGTGGACATATCGGAC 58.679 55.000 19.93 0.00 44.69 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
221 224 9.639601 GGTTATTTCCCTTACAAAAAGATTGAG 57.360 33.333 0.00 0.00 0.00 3.02
284 287 0.548510 GGCCTAGCTTCAGGGTCATT 59.451 55.000 4.68 0.00 36.10 2.57
291 294 1.118356 ATCGGAGGGCCTAGCTTCAG 61.118 60.000 5.73 0.00 0.00 3.02
319 322 4.241555 ATCGCGTCTCCATGGCCC 62.242 66.667 6.96 0.00 0.00 5.80
323 326 2.969238 GGCCATCGCGTCTCCATG 60.969 66.667 5.77 1.24 35.02 3.66
333 336 4.856801 CAAGGGTCGGGGCCATCG 62.857 72.222 4.39 8.42 0.00 3.84
361 366 5.248380 ACACCTAAAAAGGAGCAAGATCT 57.752 39.130 0.00 0.00 0.00 2.75
371 376 6.252655 CGAACTCACAAAAACACCTAAAAAGG 59.747 38.462 0.00 0.00 0.00 3.11
372 377 6.804783 ACGAACTCACAAAAACACCTAAAAAG 59.195 34.615 0.00 0.00 0.00 2.27
388 394 3.195661 CATAGGCCCTAAACGAACTCAC 58.804 50.000 0.00 0.00 0.00 3.51
404 410 3.736433 CGTCTTCCTGAGCAAGACATAGG 60.736 52.174 15.86 0.00 46.99 2.57
407 413 1.895798 TCGTCTTCCTGAGCAAGACAT 59.104 47.619 15.86 0.00 46.99 3.06
438 444 4.119155 ACCTTATTCCATCTTCAAGGGGA 58.881 43.478 3.90 0.00 40.10 4.81
464 470 4.772231 AACGAGGGCTAGGCGGGA 62.772 66.667 10.58 0.00 0.00 5.14
492 502 1.153823 CACACCCTCCGACGATGAC 60.154 63.158 0.00 0.00 0.00 3.06
493 503 1.605451 ACACACCCTCCGACGATGA 60.605 57.895 0.00 0.00 0.00 2.92
504 514 2.594592 GCACACCTCCACACACCC 60.595 66.667 0.00 0.00 0.00 4.61
535 545 4.444838 CACCGACCGAATCCCGCA 62.445 66.667 0.00 0.00 36.84 5.69
537 547 2.679132 CTAGCACCGACCGAATCCCG 62.679 65.000 0.00 0.00 38.18 5.14
545 555 1.139095 CCGAAGACTAGCACCGACC 59.861 63.158 0.00 0.00 0.00 4.79
551 561 1.751351 CAGATCCACCGAAGACTAGCA 59.249 52.381 0.00 0.00 0.00 3.49
555 565 1.270907 AAGCAGATCCACCGAAGACT 58.729 50.000 0.00 0.00 0.00 3.24
575 585 4.260985 ACACAATAACGAAGCATGGATCA 58.739 39.130 0.00 0.00 0.00 2.92
582 592 4.242475 CCTGTAGACACAATAACGAAGCA 58.758 43.478 0.00 0.00 33.22 3.91
583 593 4.243270 ACCTGTAGACACAATAACGAAGC 58.757 43.478 0.00 0.00 33.22 3.86
588 598 6.879458 AGAATCCAACCTGTAGACACAATAAC 59.121 38.462 0.00 0.00 33.22 1.89
591 601 5.505181 AGAATCCAACCTGTAGACACAAT 57.495 39.130 0.00 0.00 33.22 2.71
592 602 4.974645 AGAATCCAACCTGTAGACACAA 57.025 40.909 0.00 0.00 33.22 3.33
615 625 5.046529 CCAATGAAGAGAAGTACAGATCGG 58.953 45.833 0.00 0.00 0.00 4.18
622 632 6.259550 ACAATTGCCAATGAAGAGAAGTAC 57.740 37.500 5.05 0.00 0.00 2.73
634 644 5.064962 CAGAACAACAACAACAATTGCCAAT 59.935 36.000 5.05 0.00 32.47 3.16
636 646 3.931468 CAGAACAACAACAACAATTGCCA 59.069 39.130 5.05 0.00 32.47 4.92
642 652 2.726373 CGCGTCAGAACAACAACAACAA 60.726 45.455 0.00 0.00 0.00 2.83
643 653 1.201976 CGCGTCAGAACAACAACAACA 60.202 47.619 0.00 0.00 0.00 3.33
644 654 1.452717 CGCGTCAGAACAACAACAAC 58.547 50.000 0.00 0.00 0.00 3.32
645 655 0.247894 GCGCGTCAGAACAACAACAA 60.248 50.000 8.43 0.00 0.00 2.83
646 656 1.087202 AGCGCGTCAGAACAACAACA 61.087 50.000 8.43 0.00 0.00 3.33
650 660 2.551270 CCAGCGCGTCAGAACAAC 59.449 61.111 8.43 0.00 0.00 3.32
660 670 2.661866 GTACTATGGCCCAGCGCG 60.662 66.667 0.00 0.00 38.94 6.86
671 681 2.352960 GGTCGGAAAGTCGTCGTACTAT 59.647 50.000 0.00 0.00 0.00 2.12
675 685 1.227999 ACGGTCGGAAAGTCGTCGTA 61.228 55.000 0.00 0.00 38.42 3.43
692 702 1.073177 CGGGCCTGTTGTAGTAAACG 58.927 55.000 2.29 0.00 32.47 3.60
695 705 1.547372 GAGTCGGGCCTGTTGTAGTAA 59.453 52.381 12.43 0.00 0.00 2.24
712 722 0.396417 CATCCCTCCCTCGTCAGAGT 60.396 60.000 0.00 0.00 42.86 3.24
719 729 2.786495 CGTCACCATCCCTCCCTCG 61.786 68.421 0.00 0.00 0.00 4.63
737 747 2.026507 CGACGACTACAAGCGTGATTTC 59.973 50.000 6.65 0.00 41.34 2.17
797 809 3.610040 TGGCAGTATGAGAAACACGAT 57.390 42.857 0.00 0.00 39.69 3.73
799 811 3.555956 GGTATGGCAGTATGAGAAACACG 59.444 47.826 0.00 0.00 39.69 4.49
806 818 6.705302 ACTTATCATGGTATGGCAGTATGAG 58.295 40.000 4.10 0.00 39.69 2.90
860 1094 1.338107 TGAGACCTTCACCGTCATGT 58.662 50.000 0.00 0.00 32.41 3.21
874 1108 2.614983 GACTAGAGGTGATCCGTGAGAC 59.385 54.545 0.00 0.00 39.05 3.36
891 1125 3.134081 CCTTTTTCATAGCTCGGGGACTA 59.866 47.826 0.00 0.00 0.00 2.59
905 1139 5.350504 TTGCATGTTTTCCTCCTTTTTCA 57.649 34.783 0.00 0.00 0.00 2.69
915 1151 5.406649 TCCGTTATCATTTGCATGTTTTCC 58.593 37.500 0.00 0.00 0.00 3.13
916 1152 6.942886 TTCCGTTATCATTTGCATGTTTTC 57.057 33.333 0.00 0.00 0.00 2.29
917 1153 7.148440 CCATTTCCGTTATCATTTGCATGTTTT 60.148 33.333 0.00 0.00 0.00 2.43
919 1155 5.811613 CCATTTCCGTTATCATTTGCATGTT 59.188 36.000 0.00 0.00 0.00 2.71
920 1156 5.126869 TCCATTTCCGTTATCATTTGCATGT 59.873 36.000 0.00 0.00 0.00 3.21
921 1157 5.590145 TCCATTTCCGTTATCATTTGCATG 58.410 37.500 0.00 0.00 0.00 4.06
922 1158 5.850557 TCCATTTCCGTTATCATTTGCAT 57.149 34.783 0.00 0.00 0.00 3.96
923 1159 5.651387 TTCCATTTCCGTTATCATTTGCA 57.349 34.783 0.00 0.00 0.00 4.08
963 1199 6.899771 CGATCTGTTAACGTCATTAATGTTGG 59.100 38.462 14.97 8.15 37.65 3.77
1088 1330 3.873910 TCGGGGAGCAATAAAAAGAGAG 58.126 45.455 0.00 0.00 0.00 3.20
1402 1659 3.008049 GCAACTGGAAAGGAAGGAGTAGA 59.992 47.826 0.00 0.00 0.00 2.59
1405 1662 1.494721 TGCAACTGGAAAGGAAGGAGT 59.505 47.619 0.00 0.00 0.00 3.85
1424 1681 8.557864 CAATCTTTACATCTAAGATTCAGCCTG 58.442 37.037 7.63 0.00 44.80 4.85
1429 1686 6.772716 GGGGCAATCTTTACATCTAAGATTCA 59.227 38.462 7.63 0.00 44.80 2.57
1437 1694 3.545703 CGAAGGGGCAATCTTTACATCT 58.454 45.455 0.00 0.00 0.00 2.90
1438 1695 2.033424 GCGAAGGGGCAATCTTTACATC 59.967 50.000 0.00 0.00 0.00 3.06
1439 1696 2.024414 GCGAAGGGGCAATCTTTACAT 58.976 47.619 0.00 0.00 0.00 2.29
1507 1764 0.108329 ACACCCTAATCGCTCCGTTG 60.108 55.000 0.00 0.00 0.00 4.10
1539 1796 1.303309 CGTCAGCCCAATCCTGAATC 58.697 55.000 0.00 0.00 40.69 2.52
1552 1809 0.390472 CTCCAGAGAAACCCGTCAGC 60.390 60.000 0.00 0.00 0.00 4.26
1605 1862 6.753279 CGACATGATAGGTTGCAAATCAAAAT 59.247 34.615 14.53 5.27 36.26 1.82
1648 1905 3.328382 TCCACTAACAACGCTGCTATT 57.672 42.857 0.00 0.00 0.00 1.73
1650 1907 2.823924 TTCCACTAACAACGCTGCTA 57.176 45.000 0.00 0.00 0.00 3.49
1651 1908 1.806542 CATTCCACTAACAACGCTGCT 59.193 47.619 0.00 0.00 0.00 4.24
1652 1909 1.729149 GCATTCCACTAACAACGCTGC 60.729 52.381 0.00 0.00 0.00 5.25
1653 1910 1.806542 AGCATTCCACTAACAACGCTG 59.193 47.619 0.00 0.00 0.00 5.18
1654 1911 2.076863 GAGCATTCCACTAACAACGCT 58.923 47.619 0.00 0.00 0.00 5.07
1740 1997 2.158842 CCATCTTTGCCTCCTACCAGAG 60.159 54.545 0.00 0.00 0.00 3.35
1753 2010 1.283029 TCCTTCCAGGCTCCATCTTTG 59.717 52.381 0.00 0.00 34.61 2.77
1787 2044 1.302033 CCGGATGCATAGGTCCAGC 60.302 63.158 0.00 0.00 34.05 4.85
1903 2160 0.950555 TGTGCAACTCTCGATGTGCC 60.951 55.000 0.00 1.47 38.04 5.01
1904 2161 0.164647 GTGTGCAACTCTCGATGTGC 59.835 55.000 0.00 0.00 38.04 4.57
1910 2167 2.222886 GCATACATGTGTGCAACTCTCG 60.223 50.000 34.36 4.77 45.37 4.04
1946 2207 6.203145 CCTGATAGATGTGCAAAGAAGATGAG 59.797 42.308 0.00 0.00 0.00 2.90
1961 2227 4.494484 TCACAAACACGTCCTGATAGATG 58.506 43.478 0.00 0.00 0.00 2.90
1973 2239 6.140737 GCAGAAGAGTAAAAATCACAAACACG 59.859 38.462 0.00 0.00 0.00 4.49
1980 2246 4.929808 TCGGAGCAGAAGAGTAAAAATCAC 59.070 41.667 0.00 0.00 0.00 3.06
1987 2253 1.819288 CCTGTCGGAGCAGAAGAGTAA 59.181 52.381 8.53 0.00 38.70 2.24
2027 2293 3.518705 AGAATCTCTTCCACAGCACATCT 59.481 43.478 0.00 0.00 31.27 2.90
2109 2375 2.159382 CTTCCATTTGTAACGCACCCT 58.841 47.619 0.00 0.00 0.00 4.34
2165 2435 4.220821 ACCGAAACAGATAGCAAGAAGAGA 59.779 41.667 0.00 0.00 0.00 3.10
2177 2449 7.544217 GGCAACATAAATTTTACCGAAACAGAT 59.456 33.333 0.00 0.00 0.00 2.90
2285 2562 5.221601 TGCTTGATATTTGTTTTTCAGCCCA 60.222 36.000 0.00 0.00 0.00 5.36
2340 2617 2.218953 ACGTTATAGGTGTCATGCCG 57.781 50.000 0.00 0.00 0.00 5.69
2434 2713 4.326504 AAACCAGGCTGTCAGAAAAATG 57.673 40.909 14.43 0.00 0.00 2.32
2435 2714 5.774690 TCATAAACCAGGCTGTCAGAAAAAT 59.225 36.000 14.43 0.00 0.00 1.82
2558 2837 4.332543 CCCCAAAAACTTCTTTTGCTGTTC 59.667 41.667 4.75 0.00 37.89 3.18
2595 2874 4.508662 CGAGAATAGAGCAGAAAAAGGGT 58.491 43.478 0.00 0.00 0.00 4.34
2609 2888 2.064762 GCATACTGCTGGCGAGAATAG 58.935 52.381 0.00 0.00 40.96 1.73
2660 2939 4.701651 CCACTTCCTGTCAAGATTTGCATA 59.298 41.667 0.00 0.00 0.00 3.14
2697 2976 1.731720 CTCTTGTAGCTGGAGTTGGC 58.268 55.000 0.00 0.00 0.00 4.52
2755 3034 4.233789 GCATCATTCCGAGAGTGATAGTC 58.766 47.826 10.15 2.76 37.00 2.59
2767 3046 2.559668 AGCATTTATGGGCATCATTCCG 59.440 45.455 0.00 0.00 37.30 4.30
2777 3056 6.377327 AACGATACTTTGAGCATTTATGGG 57.623 37.500 0.00 0.00 0.00 4.00
2823 3104 0.320858 TGCATTTTCGCCCGACTGTA 60.321 50.000 0.00 0.00 0.00 2.74
2828 3109 1.971167 AGCTTGCATTTTCGCCCGA 60.971 52.632 0.00 0.00 0.00 5.14
2865 3146 2.529151 CTGTGTGACAAACCTTGCAAC 58.471 47.619 0.00 0.00 0.00 4.17
2903 3184 6.646240 AGGTGATATTTGTGACAAAATTGTGC 59.354 34.615 15.31 4.44 42.43 4.57
2922 3203 9.136323 GGATTGAAGGAACAAAATATAGGTGAT 57.864 33.333 0.00 0.00 33.44 3.06
2934 3215 2.892852 CTGCAAGGGATTGAAGGAACAA 59.107 45.455 0.00 0.00 0.00 2.83
2943 3224 3.690460 AGGTAGAAACTGCAAGGGATTG 58.310 45.455 0.00 0.00 39.30 2.67
2959 3240 8.088981 AGTTTACTGATACAGTGTGAAAGGTAG 58.911 37.037 5.88 0.00 45.01 3.18
2971 3252 6.166279 TCAGAGCCAAAGTTTACTGATACAG 58.834 40.000 0.00 0.00 37.52 2.74
2985 3266 4.724399 TGACCTGTAAATTCAGAGCCAAA 58.276 39.130 0.00 0.00 37.61 3.28
3118 3399 4.293415 GTCTGGTGTTCTGCTTTTGAATG 58.707 43.478 0.00 0.00 0.00 2.67
3212 3494 4.385825 TGTTGAATGTCCACAGGAACTAC 58.614 43.478 0.00 0.00 36.02 2.73
3214 3496 3.576078 TGTTGAATGTCCACAGGAACT 57.424 42.857 0.00 0.00 43.88 3.01
3215 3497 3.632145 ACTTGTTGAATGTCCACAGGAAC 59.368 43.478 0.00 0.00 31.38 3.62
3252 3552 4.023963 GGGCAACTACAAACAAGACTCTTC 60.024 45.833 0.00 0.00 0.00 2.87
3257 3557 2.293399 CTGGGGCAACTACAAACAAGAC 59.707 50.000 0.00 0.00 0.00 3.01
3339 3643 9.613428 ATGCATTTCAATGATTTGATTGAATCT 57.387 25.926 6.73 0.00 46.62 2.40
3360 3664 3.693085 ACAATTCTTCGAAGCTCATGCAT 59.307 39.130 20.56 0.00 42.74 3.96
3363 3667 4.934075 TCACAATTCTTCGAAGCTCATG 57.066 40.909 20.56 16.81 0.00 3.07
3364 3668 6.116680 GAATCACAATTCTTCGAAGCTCAT 57.883 37.500 20.56 9.13 38.61 2.90
3365 3669 5.536554 GAATCACAATTCTTCGAAGCTCA 57.463 39.130 20.56 7.12 38.61 4.26
3376 3680 7.993101 TGGATTTCTCATCAGAATCACAATTC 58.007 34.615 0.00 0.00 38.50 2.17
3457 4298 6.973229 ATTGTTCTTGCAGAATTAATTGGC 57.027 33.333 5.17 9.66 36.50 4.52
3488 4329 3.365265 GCTGGCAACACGAAGGGG 61.365 66.667 0.00 0.00 46.17 4.79
3494 4335 1.002366 GAGTATCAGCTGGCAACACG 58.998 55.000 15.13 0.00 36.82 4.49
3535 4376 8.675504 GCTAGCTGCTGATATATCAAATCAAAT 58.324 33.333 16.08 8.28 36.18 2.32
3536 4377 8.037382 GCTAGCTGCTGATATATCAAATCAAA 57.963 34.615 16.08 1.56 36.18 2.69
3537 4378 7.606858 GCTAGCTGCTGATATATCAAATCAA 57.393 36.000 16.08 1.11 36.18 2.57
3574 4415 4.023450 AGTTCGTCAGATACTGTTTCACGA 60.023 41.667 8.82 8.82 33.25 4.35
3575 4416 4.227538 AGTTCGTCAGATACTGTTTCACG 58.772 43.478 1.22 3.52 32.61 4.35
3578 4419 7.306953 AGACTTAGTTCGTCAGATACTGTTTC 58.693 38.462 0.00 0.00 33.89 2.78
3582 4423 5.354513 TGGAGACTTAGTTCGTCAGATACTG 59.645 44.000 0.00 0.00 33.89 2.74
3617 4543 3.625764 TGTTTTAGACACTGCCAACACTC 59.374 43.478 0.00 0.00 32.00 3.51
3618 4544 3.616219 TGTTTTAGACACTGCCAACACT 58.384 40.909 0.00 0.00 32.00 3.55
3624 4550 5.458015 GTTGGTATTGTTTTAGACACTGCC 58.542 41.667 0.00 0.00 41.86 4.85
3659 4585 6.535150 TCTGAAATACATGCAGCAAGTACTAC 59.465 38.462 12.58 7.56 0.00 2.73
3660 4586 6.639563 TCTGAAATACATGCAGCAAGTACTA 58.360 36.000 12.58 0.00 0.00 1.82
3661 4587 5.491070 TCTGAAATACATGCAGCAAGTACT 58.509 37.500 12.58 0.00 0.00 2.73
3672 4601 9.166173 TCACCATTTTCTACTCTGAAATACATG 57.834 33.333 0.00 0.00 36.07 3.21
3745 4674 1.980232 CTGGGCAAATGGCTGCAGA 60.980 57.895 20.43 0.00 44.52 4.26
3764 4693 2.656002 TGGTGGACTAGCTAGCTGTAG 58.344 52.381 27.68 19.36 0.00 2.74
3765 4694 2.820728 TGGTGGACTAGCTAGCTGTA 57.179 50.000 27.68 7.31 0.00 2.74
3766 4695 1.827969 CTTGGTGGACTAGCTAGCTGT 59.172 52.381 27.68 21.31 0.00 4.40
3848 4882 6.072286 GCTCTGTTCCATCAGAATTCAGAAAA 60.072 38.462 8.44 0.00 42.73 2.29
3875 4909 2.440409 CAAAACCATCCTCCAGACCTG 58.560 52.381 0.00 0.00 0.00 4.00
3959 5245 6.402550 CCCGATATCCGATATTTTGAAGCTTG 60.403 42.308 2.10 0.00 41.76 4.01
3960 5246 5.643777 CCCGATATCCGATATTTTGAAGCTT 59.356 40.000 0.00 0.00 41.76 3.74
3961 5247 5.178797 CCCGATATCCGATATTTTGAAGCT 58.821 41.667 2.36 0.00 41.76 3.74
3962 5248 4.935808 ACCCGATATCCGATATTTTGAAGC 59.064 41.667 2.36 0.00 41.76 3.86
3963 5249 6.183360 CGAACCCGATATCCGATATTTTGAAG 60.183 42.308 2.36 0.00 41.76 3.02
3964 5250 5.636121 CGAACCCGATATCCGATATTTTGAA 59.364 40.000 2.36 0.00 41.76 2.69
3965 5251 5.165676 CGAACCCGATATCCGATATTTTGA 58.834 41.667 2.36 0.00 41.76 2.69
3966 5252 4.927425 ACGAACCCGATATCCGATATTTTG 59.073 41.667 2.36 0.62 41.76 2.44
3967 5253 5.143376 ACGAACCCGATATCCGATATTTT 57.857 39.130 2.36 0.00 41.76 1.82
3968 5254 4.796038 ACGAACCCGATATCCGATATTT 57.204 40.909 2.36 0.00 41.76 1.40
3969 5255 5.277683 CGATACGAACCCGATATCCGATATT 60.278 44.000 2.36 0.00 41.76 1.28
3970 5256 4.212847 CGATACGAACCCGATATCCGATAT 59.787 45.833 0.17 0.17 41.76 1.63
3971 5257 3.557185 CGATACGAACCCGATATCCGATA 59.443 47.826 5.49 0.00 41.76 2.92
3972 5258 2.353889 CGATACGAACCCGATATCCGAT 59.646 50.000 5.49 0.00 41.76 4.18
3973 5259 1.733912 CGATACGAACCCGATATCCGA 59.266 52.381 5.49 0.00 41.76 4.55
3974 5260 1.202110 CCGATACGAACCCGATATCCG 60.202 57.143 0.00 0.00 39.50 4.18
3975 5261 1.815003 ACCGATACGAACCCGATATCC 59.185 52.381 0.00 0.00 39.50 2.59
3976 5262 3.565905 AACCGATACGAACCCGATATC 57.434 47.619 0.00 0.00 39.50 1.63
3977 5263 3.553508 CCAAACCGATACGAACCCGATAT 60.554 47.826 0.00 0.00 39.50 1.63
3978 5264 2.223782 CCAAACCGATACGAACCCGATA 60.224 50.000 0.00 0.00 39.50 2.92
3979 5265 1.472026 CCAAACCGATACGAACCCGAT 60.472 52.381 0.00 0.00 39.50 4.18
3980 5266 0.108709 CCAAACCGATACGAACCCGA 60.109 55.000 0.00 0.00 39.50 5.14
3981 5267 1.698714 GCCAAACCGATACGAACCCG 61.699 60.000 0.00 0.00 42.50 5.28
3982 5268 0.392060 AGCCAAACCGATACGAACCC 60.392 55.000 0.00 0.00 0.00 4.11
3983 5269 1.395954 GAAGCCAAACCGATACGAACC 59.604 52.381 0.00 0.00 0.00 3.62
3984 5270 1.060122 CGAAGCCAAACCGATACGAAC 59.940 52.381 0.00 0.00 0.00 3.95
3985 5271 1.067706 TCGAAGCCAAACCGATACGAA 60.068 47.619 0.00 0.00 0.00 3.85
3986 5272 0.527113 TCGAAGCCAAACCGATACGA 59.473 50.000 0.00 0.00 0.00 3.43
3987 5273 0.643820 GTCGAAGCCAAACCGATACG 59.356 55.000 0.00 0.00 34.71 3.06
3988 5274 1.717194 TGTCGAAGCCAAACCGATAC 58.283 50.000 0.00 0.00 34.71 2.24
3989 5275 2.684001 ATGTCGAAGCCAAACCGATA 57.316 45.000 0.00 0.00 34.71 2.92
3990 5276 2.684001 TATGTCGAAGCCAAACCGAT 57.316 45.000 0.00 0.00 34.71 4.18
3991 5277 2.546778 GATATGTCGAAGCCAAACCGA 58.453 47.619 0.00 0.00 0.00 4.69
4000 5286 7.880873 CGATATCCGATATCCGATATGTCGAAG 60.881 44.444 23.15 0.00 45.35 3.79
4001 5287 6.128634 CGATATCCGATATCCGATATGTCGAA 60.129 42.308 23.15 0.00 45.35 3.71
4002 5288 5.347907 CGATATCCGATATCCGATATGTCGA 59.652 44.000 23.15 0.02 45.35 4.20
4003 5289 5.347907 TCGATATCCGATATCCGATATGTCG 59.652 44.000 23.15 21.35 44.02 4.35
4004 5290 6.723131 TCGATATCCGATATCCGATATGTC 57.277 41.667 23.15 13.97 43.23 3.06
4017 5303 5.850614 TCCGATATATCACTCGATATCCGA 58.149 41.667 13.11 0.00 42.66 4.55
4018 5304 5.927115 TCTCCGATATATCACTCGATATCCG 59.073 44.000 13.11 4.81 42.66 4.18
4019 5305 7.731882 TTCTCCGATATATCACTCGATATCC 57.268 40.000 13.11 0.00 42.66 2.59
4020 5306 8.071368 GGTTTCTCCGATATATCACTCGATATC 58.929 40.741 13.11 0.00 42.66 1.63
4021 5307 7.556635 TGGTTTCTCCGATATATCACTCGATAT 59.443 37.037 13.11 0.00 41.99 1.63
4022 5308 6.882678 TGGTTTCTCCGATATATCACTCGATA 59.117 38.462 13.11 0.00 37.49 2.92
4023 5309 5.710567 TGGTTTCTCCGATATATCACTCGAT 59.289 40.000 13.11 0.00 39.52 3.59
4024 5310 5.067954 TGGTTTCTCCGATATATCACTCGA 58.932 41.667 13.11 1.06 39.52 4.04
4025 5311 5.372547 TGGTTTCTCCGATATATCACTCG 57.627 43.478 13.11 0.11 39.52 4.18
4026 5312 6.750148 ACTTGGTTTCTCCGATATATCACTC 58.250 40.000 13.11 0.00 39.52 3.51
4027 5313 6.551601 AGACTTGGTTTCTCCGATATATCACT 59.448 38.462 13.11 0.00 39.52 3.41
4028 5314 6.750148 AGACTTGGTTTCTCCGATATATCAC 58.250 40.000 13.11 2.28 39.52 3.06
4029 5315 6.978674 AGACTTGGTTTCTCCGATATATCA 57.021 37.500 13.11 0.00 39.52 2.15
4030 5316 8.113173 ACTAGACTTGGTTTCTCCGATATATC 57.887 38.462 2.34 2.34 39.52 1.63
4031 5317 8.480133 AACTAGACTTGGTTTCTCCGATATAT 57.520 34.615 0.00 0.00 39.52 0.86
4032 5318 7.893124 AACTAGACTTGGTTTCTCCGATATA 57.107 36.000 0.00 0.00 39.52 0.86
4033 5319 6.793505 AACTAGACTTGGTTTCTCCGATAT 57.206 37.500 0.00 0.00 39.52 1.63
4034 5320 6.600882 AAACTAGACTTGGTTTCTCCGATA 57.399 37.500 0.00 0.00 33.28 2.92
4035 5321 5.485209 AAACTAGACTTGGTTTCTCCGAT 57.515 39.130 0.00 0.00 33.28 4.18
4036 5322 4.950205 AAACTAGACTTGGTTTCTCCGA 57.050 40.909 0.00 0.00 33.28 4.55
4068 5354 9.921637 ACTAAAAGTGAATGTTTTGAACAAGAA 57.078 25.926 0.00 0.00 45.86 2.52
4107 5393 9.182214 AGTGTTATGTTAAAGCATTGAGATCAT 57.818 29.630 0.00 0.00 0.00 2.45
4108 5394 8.565896 AGTGTTATGTTAAAGCATTGAGATCA 57.434 30.769 0.00 0.00 0.00 2.92
4109 5395 9.846248 AAAGTGTTATGTTAAAGCATTGAGATC 57.154 29.630 0.00 0.00 0.00 2.75
4164 5450 9.268282 TGTGAGTCCTTCCTTATTAGTTTCTAT 57.732 33.333 0.00 0.00 0.00 1.98
4165 5451 8.660295 TGTGAGTCCTTCCTTATTAGTTTCTA 57.340 34.615 0.00 0.00 0.00 2.10
4166 5452 7.554959 TGTGAGTCCTTCCTTATTAGTTTCT 57.445 36.000 0.00 0.00 0.00 2.52
4167 5453 8.617290 TTTGTGAGTCCTTCCTTATTAGTTTC 57.383 34.615 0.00 0.00 0.00 2.78
4168 5454 8.990163 TTTTGTGAGTCCTTCCTTATTAGTTT 57.010 30.769 0.00 0.00 0.00 2.66
4169 5455 9.232473 GATTTTGTGAGTCCTTCCTTATTAGTT 57.768 33.333 0.00 0.00 0.00 2.24
4170 5456 7.829706 GGATTTTGTGAGTCCTTCCTTATTAGT 59.170 37.037 0.00 0.00 0.00 2.24
4171 5457 8.049721 AGGATTTTGTGAGTCCTTCCTTATTAG 58.950 37.037 0.00 0.00 39.28 1.73
4172 5458 7.928873 AGGATTTTGTGAGTCCTTCCTTATTA 58.071 34.615 0.00 0.00 39.28 0.98
4173 5459 6.794534 AGGATTTTGTGAGTCCTTCCTTATT 58.205 36.000 0.00 0.00 39.28 1.40
4174 5460 6.394345 AGGATTTTGTGAGTCCTTCCTTAT 57.606 37.500 0.00 0.00 39.28 1.73
4175 5461 5.843019 AGGATTTTGTGAGTCCTTCCTTA 57.157 39.130 0.00 0.00 39.28 2.69
4176 5462 4.731313 AGGATTTTGTGAGTCCTTCCTT 57.269 40.909 0.00 0.00 39.28 3.36
4177 5463 4.731313 AAGGATTTTGTGAGTCCTTCCT 57.269 40.909 0.23 0.00 46.63 3.36
4178 5464 5.561679 AGTAAGGATTTTGTGAGTCCTTCC 58.438 41.667 8.99 0.00 46.63 3.46
4179 5465 5.644206 GGAGTAAGGATTTTGTGAGTCCTTC 59.356 44.000 8.99 2.93 46.63 3.46
4181 5467 4.597507 TGGAGTAAGGATTTTGTGAGTCCT 59.402 41.667 0.00 0.00 44.04 3.85
4182 5468 4.906618 TGGAGTAAGGATTTTGTGAGTCC 58.093 43.478 0.00 0.00 0.00 3.85
4183 5469 6.173339 TCATGGAGTAAGGATTTTGTGAGTC 58.827 40.000 0.00 0.00 0.00 3.36
4184 5470 6.126863 TCATGGAGTAAGGATTTTGTGAGT 57.873 37.500 0.00 0.00 0.00 3.41
4185 5471 7.636150 AATCATGGAGTAAGGATTTTGTGAG 57.364 36.000 0.00 0.00 0.00 3.51
4186 5472 9.527157 TTTAATCATGGAGTAAGGATTTTGTGA 57.473 29.630 0.00 0.00 32.62 3.58
4195 5481 9.716507 CGTATTGTTTTTAATCATGGAGTAAGG 57.283 33.333 0.00 0.00 0.00 2.69
4225 5511 9.299963 GCAGAATGTTTTGTACAAATGCATATA 57.700 29.630 26.07 11.45 40.89 0.86
4226 5512 7.818446 TGCAGAATGTTTTGTACAAATGCATAT 59.182 29.630 28.26 19.92 43.02 1.78
4227 5513 7.150640 TGCAGAATGTTTTGTACAAATGCATA 58.849 30.769 28.26 15.28 43.02 3.14
4228 5514 5.990386 TGCAGAATGTTTTGTACAAATGCAT 59.010 32.000 28.26 25.33 43.02 3.96
4229 5515 5.354767 TGCAGAATGTTTTGTACAAATGCA 58.645 33.333 28.26 28.26 44.35 3.96
4230 5516 5.903764 TGCAGAATGTTTTGTACAAATGC 57.096 34.783 25.03 25.03 40.89 3.56
4231 5517 7.383029 AGTCATGCAGAATGTTTTGTACAAATG 59.617 33.333 21.17 15.63 40.89 2.32
4232 5518 7.436118 AGTCATGCAGAATGTTTTGTACAAAT 58.564 30.769 21.17 6.87 40.89 2.32
4233 5519 6.804677 AGTCATGCAGAATGTTTTGTACAAA 58.195 32.000 17.01 17.01 40.89 2.83
4234 5520 6.389830 AGTCATGCAGAATGTTTTGTACAA 57.610 33.333 3.59 3.59 40.89 2.41
4235 5521 6.389830 AAGTCATGCAGAATGTTTTGTACA 57.610 33.333 0.00 0.00 41.97 2.90
4236 5522 6.917477 TCAAAGTCATGCAGAATGTTTTGTAC 59.083 34.615 15.15 0.00 39.79 2.90
4237 5523 7.036996 TCAAAGTCATGCAGAATGTTTTGTA 57.963 32.000 15.15 5.72 39.79 2.41
4238 5524 5.904941 TCAAAGTCATGCAGAATGTTTTGT 58.095 33.333 15.15 0.00 39.79 2.83
4239 5525 8.523523 TTATCAAAGTCATGCAGAATGTTTTG 57.476 30.769 11.80 11.80 39.96 2.44
4266 5552 9.882996 CATTATGCGTTCACAACTTCATTATAT 57.117 29.630 0.00 0.00 0.00 0.86
4267 5553 7.855409 GCATTATGCGTTCACAACTTCATTATA 59.145 33.333 0.00 0.00 31.71 0.98
4268 5554 6.692681 GCATTATGCGTTCACAACTTCATTAT 59.307 34.615 0.00 0.00 31.71 1.28
4269 5555 6.027131 GCATTATGCGTTCACAACTTCATTA 58.973 36.000 0.00 0.00 31.71 1.90
4270 5556 4.858692 GCATTATGCGTTCACAACTTCATT 59.141 37.500 0.00 0.00 31.71 2.57
4271 5557 4.414852 GCATTATGCGTTCACAACTTCAT 58.585 39.130 0.00 0.00 31.71 2.57
4272 5558 3.820689 GCATTATGCGTTCACAACTTCA 58.179 40.909 0.00 0.00 31.71 3.02
4285 5571 6.501781 AGAAAGCAGTGAAATAGCATTATGC 58.498 36.000 9.46 9.46 45.46 3.14
4316 5602 8.025243 ACGATACGTAGATGACAACAATTTTT 57.975 30.769 0.08 0.00 38.73 1.94
4317 5603 7.591006 ACGATACGTAGATGACAACAATTTT 57.409 32.000 0.08 0.00 38.73 1.82
4318 5604 7.544566 AGAACGATACGTAGATGACAACAATTT 59.455 33.333 0.08 0.00 39.99 1.82
4319 5605 7.033791 AGAACGATACGTAGATGACAACAATT 58.966 34.615 0.08 0.00 39.99 2.32
4320 5606 6.561614 AGAACGATACGTAGATGACAACAAT 58.438 36.000 0.08 0.00 39.99 2.71
4321 5607 5.946298 AGAACGATACGTAGATGACAACAA 58.054 37.500 0.08 0.00 39.99 2.83
4322 5608 5.556355 AGAACGATACGTAGATGACAACA 57.444 39.130 0.08 0.00 39.99 3.33
4323 5609 7.743838 GGTATAGAACGATACGTAGATGACAAC 59.256 40.741 0.08 0.00 39.99 3.32
4324 5610 7.359514 CGGTATAGAACGATACGTAGATGACAA 60.360 40.741 0.08 0.00 39.99 3.18
4325 5611 6.089954 CGGTATAGAACGATACGTAGATGACA 59.910 42.308 0.08 0.00 39.99 3.58
4326 5612 6.454848 CCGGTATAGAACGATACGTAGATGAC 60.455 46.154 0.00 0.00 39.99 3.06
4327 5613 5.578336 CCGGTATAGAACGATACGTAGATGA 59.422 44.000 0.00 0.00 39.99 2.92
4328 5614 5.349817 ACCGGTATAGAACGATACGTAGATG 59.650 44.000 4.49 0.00 39.99 2.90
4329 5615 5.349817 CACCGGTATAGAACGATACGTAGAT 59.650 44.000 6.87 0.00 39.99 1.98
4330 5616 4.686091 CACCGGTATAGAACGATACGTAGA 59.314 45.833 6.87 0.00 39.99 2.59
4331 5617 4.143030 CCACCGGTATAGAACGATACGTAG 60.143 50.000 6.87 0.00 39.99 3.51
4332 5618 3.745975 CCACCGGTATAGAACGATACGTA 59.254 47.826 6.87 0.00 39.99 3.57
4333 5619 2.549754 CCACCGGTATAGAACGATACGT 59.450 50.000 6.87 0.00 43.97 3.57
4334 5620 2.807967 TCCACCGGTATAGAACGATACG 59.192 50.000 6.87 0.00 33.76 3.06
4335 5621 3.565482 TGTCCACCGGTATAGAACGATAC 59.435 47.826 6.87 0.00 0.00 2.24
4336 5622 3.819368 TGTCCACCGGTATAGAACGATA 58.181 45.455 6.87 0.00 0.00 2.92
4337 5623 2.658285 TGTCCACCGGTATAGAACGAT 58.342 47.619 6.87 0.00 0.00 3.73
4338 5624 2.127271 TGTCCACCGGTATAGAACGA 57.873 50.000 6.87 0.00 0.00 3.85
4339 5625 4.670992 CGATATGTCCACCGGTATAGAACG 60.671 50.000 6.87 5.85 0.00 3.95
4340 5626 4.380233 CCGATATGTCCACCGGTATAGAAC 60.380 50.000 6.87 1.66 37.40 3.01
4341 5627 3.760151 CCGATATGTCCACCGGTATAGAA 59.240 47.826 6.87 0.00 37.40 2.10
4342 5628 3.009363 TCCGATATGTCCACCGGTATAGA 59.991 47.826 6.87 1.01 42.34 1.98
4343 5629 3.128242 GTCCGATATGTCCACCGGTATAG 59.872 52.174 6.87 0.00 42.34 1.31
4344 5630 3.084039 GTCCGATATGTCCACCGGTATA 58.916 50.000 6.87 1.10 42.34 1.47
4345 5631 1.891150 GTCCGATATGTCCACCGGTAT 59.109 52.381 6.87 0.00 42.34 2.73
4346 5632 1.321474 GTCCGATATGTCCACCGGTA 58.679 55.000 6.87 0.00 42.34 4.02
4347 5633 2.121645 GTCCGATATGTCCACCGGT 58.878 57.895 0.00 0.00 42.34 5.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.