Multiple sequence alignment - TraesCS1A01G043100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G043100 chr1A 100.000 2975 0 0 1 2975 23855728 23858702 0.000000e+00 5494.0
1 TraesCS1A01G043100 chr1A 100.000 28 0 0 564 591 372906251 372906278 5.000000e-03 52.8
2 TraesCS1A01G043100 chr1B 92.032 1644 70 33 588 2214 39070054 39068455 0.000000e+00 2254.0
3 TraesCS1A01G043100 chr1B 86.059 538 62 12 2446 2975 39068269 39067737 1.550000e-157 566.0
4 TraesCS1A01G043100 chr1B 79.870 154 26 5 63 215 462978463 462978612 1.130000e-19 108.0
5 TraesCS1A01G043100 chr1D 90.720 1681 66 40 588 2240 22862945 22864563 0.000000e+00 2158.0
6 TraesCS1A01G043100 chr1D 93.736 447 24 4 2530 2975 22864913 22865356 0.000000e+00 667.0
7 TraesCS1A01G043100 chr1D 85.714 70 10 0 2386 2455 396741778 396741847 1.140000e-09 75.0
8 TraesCS1A01G043100 chr4A 83.299 485 69 10 1255 1731 103068712 103069192 1.270000e-118 436.0
9 TraesCS1A01G043100 chr4D 82.474 485 73 10 1255 1731 362131941 362131461 5.930000e-112 414.0
10 TraesCS1A01G043100 chr4D 90.196 51 5 0 2408 2458 5531241 5531291 1.910000e-07 67.6
11 TraesCS1A01G043100 chr6D 76.026 463 95 13 1280 1731 364227237 364227694 2.980000e-55 226.0
12 TraesCS1A01G043100 chr7A 75.301 498 99 16 1255 1731 195218005 195217511 1.800000e-52 217.0
13 TraesCS1A01G043100 chr7A 77.308 260 40 14 347 591 40260568 40260313 5.170000e-28 135.0
14 TraesCS1A01G043100 chr7A 85.217 115 16 1 101 215 460590041 460589928 1.870000e-22 117.0
15 TraesCS1A01G043100 chr7D 74.447 497 103 17 1256 1731 188874350 188874843 3.030000e-45 193.0
16 TraesCS1A01G043100 chr7D 83.158 95 10 6 2364 2456 232411139 232411229 6.830000e-12 82.4
17 TraesCS1A01G043100 chr7B 74.245 497 101 21 1256 1731 333129494 333129984 1.820000e-42 183.0
18 TraesCS1A01G043100 chr2D 80.228 263 32 10 346 590 170509706 170509446 2.360000e-41 180.0
19 TraesCS1A01G043100 chr2D 90.000 50 5 0 2407 2456 276934146 276934195 6.880000e-07 65.8
20 TraesCS1A01G043100 chr3B 87.805 123 11 3 2314 2435 454722798 454722917 1.110000e-29 141.0
21 TraesCS1A01G043100 chr3B 81.579 114 16 4 347 457 472913557 472913668 4.080000e-14 89.8
22 TraesCS1A01G043100 chr5D 82.639 144 20 5 2317 2456 278311231 278311373 4.030000e-24 122.0
23 TraesCS1A01G043100 chr5A 80.000 125 22 3 102 225 504873854 504873976 4.080000e-14 89.8
24 TraesCS1A01G043100 chr5A 74.089 247 47 13 361 591 317106196 317106441 5.280000e-13 86.1
25 TraesCS1A01G043100 chr5A 89.362 47 5 0 2408 2454 652046968 652046922 3.200000e-05 60.2
26 TraesCS1A01G043100 chr3D 80.488 123 13 10 2317 2435 565405369 565405484 1.900000e-12 84.2
27 TraesCS1A01G043100 chr3D 100.000 28 0 0 564 591 379458163 379458136 5.000000e-03 52.8
28 TraesCS1A01G043100 chr2A 90.000 50 4 1 2386 2435 14530249 14530297 2.480000e-06 63.9
29 TraesCS1A01G043100 chr3A 100.000 28 0 0 564 591 601405023 601404996 5.000000e-03 52.8
30 TraesCS1A01G043100 chr2B 100.000 28 0 0 564 591 742025450 742025423 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G043100 chr1A 23855728 23858702 2974 False 5494.0 5494 100.0000 1 2975 1 chr1A.!!$F1 2974
1 TraesCS1A01G043100 chr1B 39067737 39070054 2317 True 1410.0 2254 89.0455 588 2975 2 chr1B.!!$R1 2387
2 TraesCS1A01G043100 chr1D 22862945 22865356 2411 False 1412.5 2158 92.2280 588 2975 2 chr1D.!!$F2 2387

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
43 44 0.107508 CATCCTTCACATGCTCCCGT 60.108 55.0 0.0 0.0 0.00 5.28 F
44 45 0.107508 ATCCTTCACATGCTCCCGTG 60.108 55.0 0.0 0.0 34.34 4.94 F
48 49 0.396435 TTCACATGCTCCCGTGTTCT 59.604 50.0 0.0 0.0 39.12 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1113 1133 1.066257 GCTGCTGTTTGGTGTGGTG 59.934 57.895 0.00 0.0 0.0 4.17 R
1687 1713 1.327690 TTGGAGAAGGTAGCCGCGAT 61.328 55.000 8.23 0.0 0.0 4.58 R
2022 2064 7.918033 GGAAAGAAAGAAGAAAGGAACAAGAAG 59.082 37.037 0.00 0.0 0.0 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.515854 GAGCGGGTAGATATCAGGTGA 58.484 52.381 5.32 0.00 0.00 4.02
21 22 3.093057 GAGCGGGTAGATATCAGGTGAT 58.907 50.000 5.32 0.00 38.51 3.06
22 23 2.828520 AGCGGGTAGATATCAGGTGATG 59.171 50.000 5.32 0.00 36.05 3.07
23 24 2.675317 GCGGGTAGATATCAGGTGATGC 60.675 54.545 5.32 0.00 36.05 3.91
24 25 2.093973 CGGGTAGATATCAGGTGATGCC 60.094 54.545 5.32 0.00 36.05 4.40
25 26 2.906389 GGGTAGATATCAGGTGATGCCA 59.094 50.000 5.32 0.00 40.61 4.92
26 27 3.521126 GGGTAGATATCAGGTGATGCCAT 59.479 47.826 5.32 0.00 40.61 4.40
27 28 4.383552 GGGTAGATATCAGGTGATGCCATC 60.384 50.000 5.32 0.00 40.61 3.51
28 29 3.996921 AGATATCAGGTGATGCCATCC 57.003 47.619 5.32 0.00 40.61 3.51
29 30 3.528976 AGATATCAGGTGATGCCATCCT 58.471 45.455 5.32 0.00 40.61 3.24
30 31 3.915073 AGATATCAGGTGATGCCATCCTT 59.085 43.478 5.32 0.00 40.61 3.36
31 32 2.653234 ATCAGGTGATGCCATCCTTC 57.347 50.000 1.49 0.00 40.61 3.46
32 33 1.288188 TCAGGTGATGCCATCCTTCA 58.712 50.000 1.49 0.00 40.61 3.02
33 34 1.065199 TCAGGTGATGCCATCCTTCAC 60.065 52.381 1.49 0.00 43.95 3.18
34 35 0.994247 AGGTGATGCCATCCTTCACA 59.006 50.000 1.49 0.00 45.52 3.58
35 36 1.567649 AGGTGATGCCATCCTTCACAT 59.432 47.619 1.49 0.00 45.52 3.21
36 37 1.679680 GGTGATGCCATCCTTCACATG 59.320 52.381 1.49 0.00 45.52 3.21
37 38 1.066605 GTGATGCCATCCTTCACATGC 59.933 52.381 1.49 0.00 44.04 4.06
38 39 1.064240 TGATGCCATCCTTCACATGCT 60.064 47.619 1.49 0.00 0.00 3.79
39 40 1.607628 GATGCCATCCTTCACATGCTC 59.392 52.381 0.00 0.00 0.00 4.26
40 41 0.394762 TGCCATCCTTCACATGCTCC 60.395 55.000 0.00 0.00 0.00 4.70
41 42 1.105759 GCCATCCTTCACATGCTCCC 61.106 60.000 0.00 0.00 0.00 4.30
42 43 0.816825 CCATCCTTCACATGCTCCCG 60.817 60.000 0.00 0.00 0.00 5.14
43 44 0.107508 CATCCTTCACATGCTCCCGT 60.108 55.000 0.00 0.00 0.00 5.28
44 45 0.107508 ATCCTTCACATGCTCCCGTG 60.108 55.000 0.00 0.00 34.34 4.94
45 46 1.003355 CCTTCACATGCTCCCGTGT 60.003 57.895 0.00 0.00 41.79 4.49
46 47 0.606401 CCTTCACATGCTCCCGTGTT 60.606 55.000 0.00 0.00 39.12 3.32
47 48 0.798776 CTTCACATGCTCCCGTGTTC 59.201 55.000 0.00 0.00 39.12 3.18
48 49 0.396435 TTCACATGCTCCCGTGTTCT 59.604 50.000 0.00 0.00 39.12 3.01
49 50 1.262417 TCACATGCTCCCGTGTTCTA 58.738 50.000 0.00 0.00 39.12 2.10
50 51 1.621317 TCACATGCTCCCGTGTTCTAA 59.379 47.619 0.00 0.00 39.12 2.10
51 52 2.037902 TCACATGCTCCCGTGTTCTAAA 59.962 45.455 0.00 0.00 39.12 1.85
52 53 2.811431 CACATGCTCCCGTGTTCTAAAA 59.189 45.455 0.00 0.00 39.12 1.52
53 54 3.252215 CACATGCTCCCGTGTTCTAAAAA 59.748 43.478 0.00 0.00 39.12 1.94
54 55 4.079253 ACATGCTCCCGTGTTCTAAAAAT 58.921 39.130 0.00 0.00 37.97 1.82
55 56 4.522789 ACATGCTCCCGTGTTCTAAAAATT 59.477 37.500 0.00 0.00 37.97 1.82
56 57 4.497473 TGCTCCCGTGTTCTAAAAATTG 57.503 40.909 0.00 0.00 0.00 2.32
57 58 4.138290 TGCTCCCGTGTTCTAAAAATTGA 58.862 39.130 0.00 0.00 0.00 2.57
58 59 4.580995 TGCTCCCGTGTTCTAAAAATTGAA 59.419 37.500 0.00 0.00 0.00 2.69
59 60 5.242838 TGCTCCCGTGTTCTAAAAATTGAAT 59.757 36.000 0.00 0.00 0.00 2.57
60 61 6.431543 TGCTCCCGTGTTCTAAAAATTGAATA 59.568 34.615 0.00 0.00 0.00 1.75
61 62 6.967199 GCTCCCGTGTTCTAAAAATTGAATAG 59.033 38.462 0.00 0.00 0.00 1.73
62 63 7.361799 GCTCCCGTGTTCTAAAAATTGAATAGT 60.362 37.037 0.00 0.00 0.00 2.12
63 64 8.036273 TCCCGTGTTCTAAAAATTGAATAGTC 57.964 34.615 0.00 0.00 0.00 2.59
64 65 7.662258 TCCCGTGTTCTAAAAATTGAATAGTCA 59.338 33.333 0.00 0.00 0.00 3.41
65 66 7.749126 CCCGTGTTCTAAAAATTGAATAGTCAC 59.251 37.037 0.00 0.00 31.90 3.67
66 67 8.286800 CCGTGTTCTAAAAATTGAATAGTCACA 58.713 33.333 0.00 0.00 31.90 3.58
67 68 9.825972 CGTGTTCTAAAAATTGAATAGTCACAT 57.174 29.630 0.00 0.00 31.90 3.21
79 80 8.684386 TTGAATAGTCACATTTAGGTGTTTCA 57.316 30.769 0.00 0.00 39.76 2.69
80 81 8.684386 TGAATAGTCACATTTAGGTGTTTCAA 57.316 30.769 0.00 0.00 39.76 2.69
81 82 9.126151 TGAATAGTCACATTTAGGTGTTTCAAA 57.874 29.630 0.00 0.00 39.76 2.69
103 104 9.993454 TCAAATAATTTCATGAACATTTGTGGA 57.007 25.926 27.88 17.50 35.96 4.02
106 107 9.947433 AATAATTTCATGAACATTTGTGGATGT 57.053 25.926 7.89 0.00 41.83 3.06
114 115 5.787953 AACATTTGTGGATGTTCACATGA 57.212 34.783 0.00 0.00 44.65 3.07
115 116 5.125100 ACATTTGTGGATGTTCACATGAC 57.875 39.130 0.00 0.00 45.63 3.06
116 117 4.583907 ACATTTGTGGATGTTCACATGACA 59.416 37.500 0.00 0.00 45.63 3.58
117 118 5.244402 ACATTTGTGGATGTTCACATGACAT 59.756 36.000 0.00 0.00 45.63 3.06
118 119 6.433716 ACATTTGTGGATGTTCACATGACATA 59.566 34.615 0.00 0.00 45.63 2.29
119 120 7.123098 ACATTTGTGGATGTTCACATGACATAT 59.877 33.333 0.00 0.00 45.63 1.78
120 121 6.439675 TTGTGGATGTTCACATGACATATG 57.560 37.500 0.00 0.00 45.63 1.78
121 122 5.499313 TGTGGATGTTCACATGACATATGT 58.501 37.500 8.43 8.43 42.05 2.29
122 123 5.585844 TGTGGATGTTCACATGACATATGTC 59.414 40.000 25.95 25.95 42.05 3.06
123 124 5.819379 GTGGATGTTCACATGACATATGTCT 59.181 40.000 30.67 16.87 40.11 3.41
124 125 6.986231 GTGGATGTTCACATGACATATGTCTA 59.014 38.462 30.67 19.78 40.11 2.59
125 126 7.658982 GTGGATGTTCACATGACATATGTCTAT 59.341 37.037 30.67 20.88 40.11 1.98
126 127 8.869109 TGGATGTTCACATGACATATGTCTATA 58.131 33.333 30.67 15.54 44.99 1.31
127 128 9.710900 GGATGTTCACATGACATATGTCTATAA 57.289 33.333 30.67 15.21 44.99 0.98
129 130 8.887036 TGTTCACATGACATATGTCTATAACC 57.113 34.615 30.67 16.29 44.99 2.85
130 131 7.931407 TGTTCACATGACATATGTCTATAACCC 59.069 37.037 30.67 16.91 44.99 4.11
131 132 7.610580 TCACATGACATATGTCTATAACCCA 57.389 36.000 30.67 13.44 44.99 4.51
132 133 8.206126 TCACATGACATATGTCTATAACCCAT 57.794 34.615 30.67 14.94 44.99 4.00
133 134 9.320295 TCACATGACATATGTCTATAACCCATA 57.680 33.333 30.67 11.57 44.99 2.74
134 135 9.942850 CACATGACATATGTCTATAACCCATAA 57.057 33.333 30.67 11.11 44.99 1.90
169 170 8.812513 ATCCAAATTCAGAACACATATTGAGA 57.187 30.769 0.00 0.00 0.00 3.27
170 171 8.634335 TCCAAATTCAGAACACATATTGAGAA 57.366 30.769 0.00 0.00 0.00 2.87
171 172 9.076781 TCCAAATTCAGAACACATATTGAGAAA 57.923 29.630 0.00 0.00 0.00 2.52
172 173 9.132521 CCAAATTCAGAACACATATTGAGAAAC 57.867 33.333 0.00 0.00 0.00 2.78
173 174 9.681692 CAAATTCAGAACACATATTGAGAAACA 57.318 29.630 0.00 0.00 0.00 2.83
200 201 7.816945 AAAGACAAATTTGGAATGAATAGCG 57.183 32.000 21.74 0.00 0.00 4.26
201 202 6.515272 AGACAAATTTGGAATGAATAGCGT 57.485 33.333 21.74 0.00 0.00 5.07
202 203 6.555315 AGACAAATTTGGAATGAATAGCGTC 58.445 36.000 21.74 5.91 0.00 5.19
203 204 6.150976 AGACAAATTTGGAATGAATAGCGTCA 59.849 34.615 21.74 0.00 0.00 4.35
204 205 6.686630 ACAAATTTGGAATGAATAGCGTCAA 58.313 32.000 21.74 0.00 0.00 3.18
205 206 7.151308 ACAAATTTGGAATGAATAGCGTCAAA 58.849 30.769 21.74 0.00 0.00 2.69
206 207 7.655328 ACAAATTTGGAATGAATAGCGTCAAAA 59.345 29.630 21.74 0.00 0.00 2.44
207 208 7.816945 AATTTGGAATGAATAGCGTCAAAAG 57.183 32.000 0.00 0.00 0.00 2.27
208 209 6.567687 TTTGGAATGAATAGCGTCAAAAGA 57.432 33.333 0.00 0.00 0.00 2.52
209 210 6.567687 TTGGAATGAATAGCGTCAAAAGAA 57.432 33.333 0.00 0.00 0.00 2.52
210 211 6.182039 TGGAATGAATAGCGTCAAAAGAAG 57.818 37.500 0.00 0.00 0.00 2.85
211 212 5.937540 TGGAATGAATAGCGTCAAAAGAAGA 59.062 36.000 0.00 0.00 0.00 2.87
212 213 6.128282 TGGAATGAATAGCGTCAAAAGAAGAC 60.128 38.462 0.00 0.00 0.00 3.01
213 214 6.128282 GGAATGAATAGCGTCAAAAGAAGACA 60.128 38.462 0.00 0.00 35.77 3.41
214 215 6.801539 ATGAATAGCGTCAAAAGAAGACAA 57.198 33.333 0.00 0.00 35.77 3.18
215 216 6.228273 TGAATAGCGTCAAAAGAAGACAAG 57.772 37.500 0.00 0.00 35.77 3.16
216 217 5.989168 TGAATAGCGTCAAAAGAAGACAAGA 59.011 36.000 0.00 0.00 35.77 3.02
217 218 5.847670 ATAGCGTCAAAAGAAGACAAGAC 57.152 39.130 0.00 0.00 35.77 3.01
218 219 3.531538 AGCGTCAAAAGAAGACAAGACA 58.468 40.909 0.00 0.00 35.77 3.41
219 220 4.130118 AGCGTCAAAAGAAGACAAGACAT 58.870 39.130 0.00 0.00 35.77 3.06
220 221 4.024556 AGCGTCAAAAGAAGACAAGACATG 60.025 41.667 0.00 0.00 35.77 3.21
221 222 4.024893 GCGTCAAAAGAAGACAAGACATGA 60.025 41.667 0.00 0.00 35.77 3.07
222 223 5.504010 GCGTCAAAAGAAGACAAGACATGAA 60.504 40.000 0.00 0.00 35.77 2.57
223 224 6.662616 CGTCAAAAGAAGACAAGACATGAAT 58.337 36.000 0.00 0.00 35.77 2.57
224 225 7.571244 GCGTCAAAAGAAGACAAGACATGAATA 60.571 37.037 0.00 0.00 35.77 1.75
225 226 7.954248 CGTCAAAAGAAGACAAGACATGAATAG 59.046 37.037 0.00 0.00 35.77 1.73
226 227 8.778358 GTCAAAAGAAGACAAGACATGAATAGT 58.222 33.333 0.00 0.00 36.06 2.12
227 228 9.996554 TCAAAAGAAGACAAGACATGAATAGTA 57.003 29.630 0.00 0.00 0.00 1.82
240 241 9.289782 AGACATGAATAGTATCATTTTTAGGGC 57.710 33.333 0.00 0.00 37.96 5.19
241 242 8.995027 ACATGAATAGTATCATTTTTAGGGCA 57.005 30.769 0.00 0.00 37.96 5.36
242 243 9.592196 ACATGAATAGTATCATTTTTAGGGCAT 57.408 29.630 0.00 0.00 37.96 4.40
243 244 9.850628 CATGAATAGTATCATTTTTAGGGCATG 57.149 33.333 0.00 0.00 37.96 4.06
244 245 8.995027 TGAATAGTATCATTTTTAGGGCATGT 57.005 30.769 0.00 0.00 0.00 3.21
248 249 9.726438 ATAGTATCATTTTTAGGGCATGTAGTC 57.274 33.333 0.00 0.00 0.00 2.59
249 250 7.573710 AGTATCATTTTTAGGGCATGTAGTCA 58.426 34.615 0.00 0.00 0.00 3.41
250 251 6.699575 ATCATTTTTAGGGCATGTAGTCAC 57.300 37.500 0.00 0.00 0.00 3.67
251 252 5.565509 TCATTTTTAGGGCATGTAGTCACA 58.434 37.500 0.00 0.00 39.52 3.58
252 253 6.186957 TCATTTTTAGGGCATGTAGTCACAT 58.813 36.000 0.00 0.00 46.58 3.21
328 329 9.601971 CTTGACTTTTTAAAAATTGATGCATGG 57.398 29.630 13.55 1.51 0.00 3.66
329 330 8.674263 TGACTTTTTAAAAATTGATGCATGGT 57.326 26.923 13.55 4.52 0.00 3.55
330 331 9.770097 TGACTTTTTAAAAATTGATGCATGGTA 57.230 25.926 13.55 0.00 0.00 3.25
332 333 8.720562 ACTTTTTAAAAATTGATGCATGGTAGC 58.279 29.630 13.55 0.00 0.00 3.58
341 342 2.408271 TGCATGGTAGCAAGAGAAGG 57.592 50.000 0.00 0.00 42.46 3.46
342 343 1.065199 TGCATGGTAGCAAGAGAAGGG 60.065 52.381 0.00 0.00 42.46 3.95
343 344 1.065126 GCATGGTAGCAAGAGAAGGGT 60.065 52.381 0.00 0.00 0.00 4.34
344 345 2.636830 CATGGTAGCAAGAGAAGGGTG 58.363 52.381 0.00 0.00 0.00 4.61
345 346 0.984230 TGGTAGCAAGAGAAGGGTGG 59.016 55.000 0.00 0.00 0.00 4.61
346 347 0.984995 GGTAGCAAGAGAAGGGTGGT 59.015 55.000 0.00 0.00 0.00 4.16
347 348 2.185387 GGTAGCAAGAGAAGGGTGGTA 58.815 52.381 0.00 0.00 0.00 3.25
348 349 2.093606 GGTAGCAAGAGAAGGGTGGTAC 60.094 54.545 4.16 4.16 42.65 3.34
349 350 2.031495 AGCAAGAGAAGGGTGGTACT 57.969 50.000 0.00 0.00 0.00 2.73
350 351 1.903183 AGCAAGAGAAGGGTGGTACTC 59.097 52.381 0.00 0.00 0.00 2.59
351 352 1.066071 GCAAGAGAAGGGTGGTACTCC 60.066 57.143 0.00 0.00 42.03 3.85
360 361 1.785647 GGTGGTACTCCCTTATCCGT 58.214 55.000 0.00 0.00 35.69 4.69
361 362 2.949447 GGTGGTACTCCCTTATCCGTA 58.051 52.381 0.00 0.00 35.69 4.02
362 363 3.299503 GGTGGTACTCCCTTATCCGTAA 58.700 50.000 0.00 0.00 35.69 3.18
363 364 3.899980 GGTGGTACTCCCTTATCCGTAAT 59.100 47.826 0.00 0.00 35.69 1.89
364 365 4.262335 GGTGGTACTCCCTTATCCGTAATG 60.262 50.000 0.00 0.00 35.69 1.90
365 366 4.343239 GTGGTACTCCCTTATCCGTAATGT 59.657 45.833 0.00 0.00 0.00 2.71
366 367 5.536161 GTGGTACTCCCTTATCCGTAATGTA 59.464 44.000 0.00 0.00 0.00 2.29
367 368 5.771666 TGGTACTCCCTTATCCGTAATGTAG 59.228 44.000 0.00 0.00 0.00 2.74
368 369 5.772169 GGTACTCCCTTATCCGTAATGTAGT 59.228 44.000 0.00 0.00 0.00 2.73
369 370 5.786264 ACTCCCTTATCCGTAATGTAGTG 57.214 43.478 0.00 0.00 0.00 2.74
370 371 4.038883 ACTCCCTTATCCGTAATGTAGTGC 59.961 45.833 0.00 0.00 0.00 4.40
371 372 3.962063 TCCCTTATCCGTAATGTAGTGCA 59.038 43.478 0.00 0.00 0.00 4.57
372 373 4.591498 TCCCTTATCCGTAATGTAGTGCAT 59.409 41.667 0.00 0.00 40.03 3.96
373 374 5.776208 TCCCTTATCCGTAATGTAGTGCATA 59.224 40.000 0.00 0.00 36.67 3.14
374 375 6.439375 TCCCTTATCCGTAATGTAGTGCATAT 59.561 38.462 0.00 0.00 36.67 1.78
375 376 7.616542 TCCCTTATCCGTAATGTAGTGCATATA 59.383 37.037 0.00 0.00 36.67 0.86
376 377 7.921214 CCCTTATCCGTAATGTAGTGCATATAG 59.079 40.741 0.00 0.00 36.67 1.31
377 378 8.683615 CCTTATCCGTAATGTAGTGCATATAGA 58.316 37.037 0.00 0.00 36.67 1.98
381 382 9.944376 ATCCGTAATGTAGTGCATATAGATTTT 57.056 29.630 8.82 0.00 36.67 1.82
382 383 9.772973 TCCGTAATGTAGTGCATATAGATTTTT 57.227 29.630 8.82 0.00 36.67 1.94
414 415 9.887406 AATCAAACTATACAAACTTTAACCACG 57.113 29.630 0.00 0.00 0.00 4.94
415 416 8.436046 TCAAACTATACAAACTTTAACCACGT 57.564 30.769 0.00 0.00 0.00 4.49
416 417 8.891720 TCAAACTATACAAACTTTAACCACGTT 58.108 29.630 0.00 0.00 0.00 3.99
417 418 9.505995 CAAACTATACAAACTTTAACCACGTTT 57.494 29.630 0.00 0.00 0.00 3.60
424 425 8.436046 ACAAACTTTAACCACGTTTATACAGA 57.564 30.769 0.00 0.00 30.41 3.41
425 426 8.891720 ACAAACTTTAACCACGTTTATACAGAA 58.108 29.630 0.00 0.00 30.41 3.02
426 427 9.719279 CAAACTTTAACCACGTTTATACAGAAA 57.281 29.630 0.00 0.00 30.41 2.52
428 429 9.720667 AACTTTAACCACGTTTATACAGAAAAC 57.279 29.630 0.00 0.00 34.25 2.43
429 430 9.112725 ACTTTAACCACGTTTATACAGAAAACT 57.887 29.630 0.00 0.00 35.20 2.66
550 551 9.052759 TCAAAGTTTATACAGTTTGACTTCTCC 57.947 33.333 14.96 0.00 34.72 3.71
551 552 8.836413 CAAAGTTTATACAGTTTGACTTCTCCA 58.164 33.333 12.06 0.00 32.65 3.86
552 553 8.974060 AAGTTTATACAGTTTGACTTCTCCAA 57.026 30.769 0.00 0.00 0.00 3.53
553 554 8.974060 AGTTTATACAGTTTGACTTCTCCAAA 57.026 30.769 0.00 0.00 0.00 3.28
554 555 9.403583 AGTTTATACAGTTTGACTTCTCCAAAA 57.596 29.630 0.00 0.00 35.57 2.44
566 567 9.638239 TTGACTTCTCCAAAAATTTATATGCAC 57.362 29.630 0.00 0.00 0.00 4.57
567 568 9.023962 TGACTTCTCCAAAAATTTATATGCACT 57.976 29.630 0.00 0.00 0.00 4.40
581 582 9.970395 ATTTATATGCACTACATTGTGAAATGG 57.030 29.630 0.00 0.00 40.38 3.16
582 583 8.744568 TTATATGCACTACATTGTGAAATGGA 57.255 30.769 0.00 0.00 40.38 3.41
583 584 5.571784 ATGCACTACATTGTGAAATGGAG 57.428 39.130 8.77 8.77 44.77 3.86
584 585 3.758023 TGCACTACATTGTGAAATGGAGG 59.242 43.478 13.76 5.57 43.78 4.30
585 586 4.009675 GCACTACATTGTGAAATGGAGGA 58.990 43.478 13.76 0.00 43.78 3.71
586 587 4.458989 GCACTACATTGTGAAATGGAGGAA 59.541 41.667 13.76 0.00 43.78 3.36
594 595 5.497464 TGTGAAATGGAGGAAGTATCACA 57.503 39.130 0.00 0.00 42.22 3.58
599 600 6.769341 TGAAATGGAGGAAGTATCACATGATG 59.231 38.462 0.00 0.00 36.05 3.07
603 604 6.484288 TGGAGGAAGTATCACATGATGTTTT 58.516 36.000 0.00 0.00 36.05 2.43
604 605 7.629157 TGGAGGAAGTATCACATGATGTTTTA 58.371 34.615 0.00 0.00 36.05 1.52
718 728 3.415087 CAGAAGGCCTGGGAGGGG 61.415 72.222 5.69 0.00 39.23 4.79
724 734 3.744155 GCCTGGGAGGGGAAAGGG 61.744 72.222 0.00 0.00 35.37 3.95
759 769 2.044252 AAGATGCCAGCCAGCCAG 60.044 61.111 0.00 0.00 0.00 4.85
760 770 4.816984 AGATGCCAGCCAGCCAGC 62.817 66.667 0.00 0.00 0.00 4.85
894 913 0.606673 ACGCCCAGAGAAAAAGGAGC 60.607 55.000 0.00 0.00 0.00 4.70
932 951 4.496360 CGAGGTAGAGGAAAGGAAGAAAC 58.504 47.826 0.00 0.00 0.00 2.78
933 952 4.021368 CGAGGTAGAGGAAAGGAAGAAACA 60.021 45.833 0.00 0.00 0.00 2.83
934 953 5.337652 CGAGGTAGAGGAAAGGAAGAAACAT 60.338 44.000 0.00 0.00 0.00 2.71
935 954 6.056090 AGGTAGAGGAAAGGAAGAAACATC 57.944 41.667 0.00 0.00 0.00 3.06
936 955 5.548056 AGGTAGAGGAAAGGAAGAAACATCA 59.452 40.000 0.00 0.00 0.00 3.07
938 957 6.149640 GGTAGAGGAAAGGAAGAAACATCAAC 59.850 42.308 0.00 0.00 0.00 3.18
939 958 5.946486 AGAGGAAAGGAAGAAACATCAACT 58.054 37.500 0.00 0.00 0.00 3.16
940 959 6.000840 AGAGGAAAGGAAGAAACATCAACTC 58.999 40.000 0.00 0.00 0.00 3.01
941 960 5.073428 AGGAAAGGAAGAAACATCAACTCC 58.927 41.667 0.00 0.00 0.00 3.85
942 961 4.827284 GGAAAGGAAGAAACATCAACTCCA 59.173 41.667 0.00 0.00 0.00 3.86
943 962 5.278512 GGAAAGGAAGAAACATCAACTCCAC 60.279 44.000 0.00 0.00 0.00 4.02
1407 1433 3.272334 GGCGCCGACATCATGGAC 61.272 66.667 12.58 0.00 0.00 4.02
1410 1436 3.272334 GCCGACATCATGGACGCC 61.272 66.667 0.00 0.00 0.00 5.68
1413 1439 2.230940 CGACATCATGGACGCCGTC 61.231 63.158 9.15 9.15 0.00 4.79
1944 1973 2.637025 GCGCACGATGTGTTTGGT 59.363 55.556 0.30 0.00 35.75 3.67
1997 2038 2.182030 GCTAGCGAGCGAGGTGTT 59.818 61.111 2.13 0.00 39.39 3.32
2021 2063 2.502130 GACTCTCGATCCCCCTCTTTTT 59.498 50.000 0.00 0.00 0.00 1.94
2022 2064 2.502130 ACTCTCGATCCCCCTCTTTTTC 59.498 50.000 0.00 0.00 0.00 2.29
2056 2099 6.183360 CCTTTCTTCTTTCTTTCCAGCTTCAA 60.183 38.462 0.00 0.00 0.00 2.69
2057 2100 6.966534 TTCTTCTTTCTTTCCAGCTTCAAT 57.033 33.333 0.00 0.00 0.00 2.57
2058 2101 6.323203 TCTTCTTTCTTTCCAGCTTCAATG 57.677 37.500 0.00 0.00 0.00 2.82
2059 2102 4.510038 TCTTTCTTTCCAGCTTCAATGC 57.490 40.909 0.00 0.00 0.00 3.56
2060 2103 4.147321 TCTTTCTTTCCAGCTTCAATGCT 58.853 39.130 0.00 0.00 45.18 3.79
2061 2104 4.586001 TCTTTCTTTCCAGCTTCAATGCTT 59.414 37.500 0.00 0.00 41.98 3.91
2062 2105 4.510038 TTCTTTCCAGCTTCAATGCTTC 57.490 40.909 0.00 0.00 41.98 3.86
2063 2106 3.489355 TCTTTCCAGCTTCAATGCTTCA 58.511 40.909 0.00 0.00 41.98 3.02
2064 2107 4.084287 TCTTTCCAGCTTCAATGCTTCAT 58.916 39.130 0.00 0.00 41.98 2.57
2065 2108 4.525487 TCTTTCCAGCTTCAATGCTTCATT 59.475 37.500 0.00 0.00 41.98 2.57
2066 2109 4.445452 TTCCAGCTTCAATGCTTCATTC 57.555 40.909 0.00 0.00 41.98 2.67
2067 2110 3.423749 TCCAGCTTCAATGCTTCATTCA 58.576 40.909 0.00 0.00 41.98 2.57
2089 2136 4.813161 CACATATCAGTGTTGTCATCTCCC 59.187 45.833 0.00 0.00 34.83 4.30
2108 2155 5.126384 TCTCCCTGTTTTGTTTTAGGTGTTG 59.874 40.000 0.00 0.00 0.00 3.33
2166 2219 3.254470 TGCCAGTGCGCTTAATTACTA 57.746 42.857 9.73 0.00 41.78 1.82
2167 2220 2.933906 TGCCAGTGCGCTTAATTACTAC 59.066 45.455 9.73 0.00 41.78 2.73
2168 2221 2.933906 GCCAGTGCGCTTAATTACTACA 59.066 45.455 9.73 0.00 0.00 2.74
2169 2222 3.001330 GCCAGTGCGCTTAATTACTACAG 59.999 47.826 9.73 0.00 0.00 2.74
2170 2223 4.181578 CCAGTGCGCTTAATTACTACAGT 58.818 43.478 9.73 0.00 0.00 3.55
2171 2224 5.345702 CCAGTGCGCTTAATTACTACAGTA 58.654 41.667 9.73 0.00 0.00 2.74
2172 2225 5.459107 CCAGTGCGCTTAATTACTACAGTAG 59.541 44.000 9.73 6.00 0.00 2.57
2173 2226 5.041940 AGTGCGCTTAATTACTACAGTAGC 58.958 41.667 9.73 0.00 0.00 3.58
2174 2227 5.041940 GTGCGCTTAATTACTACAGTAGCT 58.958 41.667 9.73 0.00 0.00 3.32
2175 2228 5.173492 GTGCGCTTAATTACTACAGTAGCTC 59.827 44.000 9.73 0.00 0.00 4.09
2176 2229 5.163591 TGCGCTTAATTACTACAGTAGCTCA 60.164 40.000 9.73 0.00 0.00 4.26
2177 2230 5.921408 GCGCTTAATTACTACAGTAGCTCAT 59.079 40.000 7.57 0.00 0.00 2.90
2178 2231 6.129062 GCGCTTAATTACTACAGTAGCTCATG 60.129 42.308 7.57 0.00 0.00 3.07
2179 2232 6.363626 CGCTTAATTACTACAGTAGCTCATGG 59.636 42.308 7.57 0.00 0.00 3.66
2183 2236 7.603180 AATTACTACAGTAGCTCATGGATGA 57.397 36.000 7.57 0.00 35.16 2.92
2206 2259 4.589216 TCAAGGAGAAACTGCAATTTGG 57.411 40.909 0.00 0.00 0.00 3.28
2213 2266 3.003689 AGAAACTGCAATTTGGTCTCGTG 59.996 43.478 0.00 0.00 0.00 4.35
2216 2269 0.950836 TGCAATTTGGTCTCGTGGTG 59.049 50.000 0.00 0.00 0.00 4.17
2220 2273 3.659786 CAATTTGGTCTCGTGGTGACTA 58.340 45.455 0.00 0.00 35.04 2.59
2221 2274 3.594603 ATTTGGTCTCGTGGTGACTAG 57.405 47.619 0.00 0.00 35.04 2.57
2231 2284 2.812591 CGTGGTGACTAGTGAGTACAGT 59.187 50.000 0.00 0.00 35.45 3.55
2242 2295 7.263496 ACTAGTGAGTACAGTTTCGTTTCTTT 58.737 34.615 0.00 0.00 32.65 2.52
2243 2296 6.345920 AGTGAGTACAGTTTCGTTTCTTTG 57.654 37.500 0.00 0.00 0.00 2.77
2257 2338 9.465985 TTTCGTTTCTTTGTTGAAGTTTTAAGT 57.534 25.926 0.00 0.00 36.70 2.24
2261 2342 7.575332 TTCTTTGTTGAAGTTTTAAGTGTGC 57.425 32.000 0.00 0.00 36.70 4.57
2265 2346 4.393680 TGTTGAAGTTTTAAGTGTGCGTCT 59.606 37.500 0.00 0.00 0.00 4.18
2266 2347 5.581479 TGTTGAAGTTTTAAGTGTGCGTCTA 59.419 36.000 0.00 0.00 0.00 2.59
2267 2348 6.092396 TGTTGAAGTTTTAAGTGTGCGTCTAA 59.908 34.615 0.00 0.00 0.00 2.10
2275 2356 3.014604 AGTGTGCGTCTAAGTTCTCAC 57.985 47.619 0.00 0.00 0.00 3.51
2281 2362 2.416162 GCGTCTAAGTTCTCACCCAGAG 60.416 54.545 0.00 0.00 46.14 3.35
2295 2376 6.019656 TCACCCAGAGACTCATATCTAACT 57.980 41.667 5.02 0.00 0.00 2.24
2297 2378 5.242838 CACCCAGAGACTCATATCTAACTCC 59.757 48.000 5.02 0.00 0.00 3.85
2299 2380 6.333168 ACCCAGAGACTCATATCTAACTCCTA 59.667 42.308 5.02 0.00 0.00 2.94
2300 2381 7.019153 ACCCAGAGACTCATATCTAACTCCTAT 59.981 40.741 5.02 0.00 0.00 2.57
2301 2382 8.553153 CCCAGAGACTCATATCTAACTCCTATA 58.447 40.741 5.02 0.00 0.00 1.31
2328 2409 8.232913 ACTATTTGAGAGACTCATCTAACTCC 57.767 38.462 5.02 0.00 40.39 3.85
2332 2413 6.314899 TGAGAGACTCATCTAACTCCTACA 57.685 41.667 5.02 0.00 35.39 2.74
2333 2414 6.353323 TGAGAGACTCATCTAACTCCTACAG 58.647 44.000 5.02 0.00 35.39 2.74
2334 2415 6.069905 TGAGAGACTCATCTAACTCCTACAGT 60.070 42.308 5.02 0.00 35.39 3.55
2342 2423 9.906660 CTCATCTAACTCCTACAGTATTTGATC 57.093 37.037 0.00 0.00 32.30 2.92
2347 2428 6.299805 ACTCCTACAGTATTTGATCTTGCA 57.700 37.500 0.00 0.00 31.37 4.08
2359 2440 2.425668 TGATCTTGCACGGAGATTCGTA 59.574 45.455 1.03 0.00 41.86 3.43
2405 2486 8.128582 CCTTGCTTGATTAATTAAATAGCGTGA 58.871 33.333 17.44 9.94 0.00 4.35
2428 2513 9.646427 GTGAGAGTTAGATGAGACTTTGTTAAT 57.354 33.333 0.00 0.00 0.00 1.40
2442 2527 9.918630 AGACTTTGTTAATTCTCATTTTGATGG 57.081 29.630 0.00 0.00 0.00 3.51
2444 2529 8.869109 ACTTTGTTAATTCTCATTTTGATGGGA 58.131 29.630 0.00 0.00 0.00 4.37
2456 2541 8.081517 TCATTTTGATGGGAATTAGCAAATCT 57.918 30.769 0.00 0.00 33.98 2.40
2465 2550 7.153985 TGGGAATTAGCAAATCTGAAGTTTTG 58.846 34.615 8.77 8.77 37.62 2.44
2472 2557 6.393171 AGCAAATCTGAAGTTTTGAATAGCC 58.607 36.000 14.97 0.69 37.06 3.93
2481 2566 5.291905 AGTTTTGAATAGCCGGCTATAGT 57.708 39.130 41.53 30.38 38.20 2.12
2482 2567 5.057149 AGTTTTGAATAGCCGGCTATAGTG 58.943 41.667 41.53 0.00 38.20 2.74
2483 2568 2.743636 TGAATAGCCGGCTATAGTGC 57.256 50.000 41.53 30.31 38.20 4.40
2494 2627 3.108144 GGCTATAGTGCATTTGCGTTTG 58.892 45.455 0.84 0.00 45.83 2.93
2558 2709 5.001232 GTGTCTTGAGGTTGCCACTATTTA 58.999 41.667 0.00 0.00 0.00 1.40
2592 2743 9.100554 TCGCTATTTAAAACTTTGATCCGAATA 57.899 29.630 0.00 0.00 0.00 1.75
2758 2912 5.131142 ACCCATTCGTTCTTTCAGATATCCT 59.869 40.000 0.00 0.00 0.00 3.24
2759 2913 5.698545 CCCATTCGTTCTTTCAGATATCCTC 59.301 44.000 0.00 0.00 0.00 3.71
2767 2921 2.632987 TCAGATATCCTCGGACGACA 57.367 50.000 0.00 0.00 0.00 4.35
2772 2926 0.253894 TATCCTCGGACGACACAGGA 59.746 55.000 6.53 6.53 0.00 3.86
2774 2928 1.972223 CCTCGGACGACACAGGAGT 60.972 63.158 0.00 0.00 0.00 3.85
2799 2953 2.876091 TCGTCAACGATCATCAAGACC 58.124 47.619 0.22 0.00 44.22 3.85
2816 2970 0.981183 ACCGGAGATGCAGTTGGTAA 59.019 50.000 9.46 0.00 0.00 2.85
2824 2978 5.634859 GGAGATGCAGTTGGTAAACAAATTG 59.365 40.000 0.00 0.00 41.58 2.32
2825 2979 6.160576 AGATGCAGTTGGTAAACAAATTGT 57.839 33.333 0.00 0.00 41.58 2.71
2863 3017 3.928992 TGATCTTGTAGCTCAGCTTTTCG 59.071 43.478 3.31 0.00 40.44 3.46
2915 3069 4.830600 GGGTAGATTTCTTTTGGTGTTGGA 59.169 41.667 0.00 0.00 0.00 3.53
2916 3070 5.480422 GGGTAGATTTCTTTTGGTGTTGGAT 59.520 40.000 0.00 0.00 0.00 3.41
2947 3101 5.363868 TCTTAGTCAATGTATCAGGGTGAGG 59.636 44.000 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.515854 TCACCTGATATCTACCCGCTC 58.484 52.381 3.98 0.00 0.00 5.03
1 2 2.677542 TCACCTGATATCTACCCGCT 57.322 50.000 3.98 0.00 0.00 5.52
2 3 2.675317 GCATCACCTGATATCTACCCGC 60.675 54.545 3.98 0.00 32.63 6.13
3 4 2.093973 GGCATCACCTGATATCTACCCG 60.094 54.545 3.98 0.00 32.63 5.28
4 5 2.906389 TGGCATCACCTGATATCTACCC 59.094 50.000 3.98 0.00 40.22 3.69
5 6 4.383552 GGATGGCATCACCTGATATCTACC 60.384 50.000 27.39 3.16 40.22 3.18
6 7 4.469227 AGGATGGCATCACCTGATATCTAC 59.531 45.833 27.39 6.62 40.22 2.59
7 8 4.692328 AGGATGGCATCACCTGATATCTA 58.308 43.478 27.39 0.00 40.22 1.98
8 9 3.528976 AGGATGGCATCACCTGATATCT 58.471 45.455 27.39 10.12 40.22 1.98
9 10 3.996921 AGGATGGCATCACCTGATATC 57.003 47.619 27.39 8.01 40.22 1.63
10 11 3.654321 TGAAGGATGGCATCACCTGATAT 59.346 43.478 27.39 3.52 40.22 1.63
11 12 3.047857 TGAAGGATGGCATCACCTGATA 58.952 45.455 27.39 6.12 40.22 2.15
12 13 1.848388 TGAAGGATGGCATCACCTGAT 59.152 47.619 27.39 4.58 40.22 2.90
13 14 1.065199 GTGAAGGATGGCATCACCTGA 60.065 52.381 27.39 6.48 37.97 3.86
14 15 1.340308 TGTGAAGGATGGCATCACCTG 60.340 52.381 27.39 0.00 42.12 4.00
15 16 0.994247 TGTGAAGGATGGCATCACCT 59.006 50.000 27.39 15.29 42.12 4.00
16 17 1.679680 CATGTGAAGGATGGCATCACC 59.320 52.381 27.39 13.16 42.12 4.02
17 18 1.066605 GCATGTGAAGGATGGCATCAC 59.933 52.381 27.39 19.00 42.90 3.06
18 19 1.064240 AGCATGTGAAGGATGGCATCA 60.064 47.619 27.39 7.13 0.00 3.07
19 20 1.607628 GAGCATGTGAAGGATGGCATC 59.392 52.381 19.23 19.23 0.00 3.91
20 21 1.688772 GAGCATGTGAAGGATGGCAT 58.311 50.000 0.00 0.00 0.00 4.40
21 22 0.394762 GGAGCATGTGAAGGATGGCA 60.395 55.000 0.00 0.00 0.00 4.92
22 23 1.105759 GGGAGCATGTGAAGGATGGC 61.106 60.000 0.00 0.00 0.00 4.40
23 24 0.816825 CGGGAGCATGTGAAGGATGG 60.817 60.000 0.00 0.00 0.00 3.51
24 25 0.107508 ACGGGAGCATGTGAAGGATG 60.108 55.000 0.00 0.00 0.00 3.51
25 26 0.107508 CACGGGAGCATGTGAAGGAT 60.108 55.000 0.00 0.00 38.36 3.24
26 27 1.296392 CACGGGAGCATGTGAAGGA 59.704 57.895 0.00 0.00 38.36 3.36
27 28 0.606401 AACACGGGAGCATGTGAAGG 60.606 55.000 0.00 0.00 39.38 3.46
28 29 0.798776 GAACACGGGAGCATGTGAAG 59.201 55.000 0.00 0.00 39.38 3.02
29 30 0.396435 AGAACACGGGAGCATGTGAA 59.604 50.000 0.00 0.00 39.38 3.18
30 31 1.262417 TAGAACACGGGAGCATGTGA 58.738 50.000 0.00 0.00 39.38 3.58
31 32 2.093306 TTAGAACACGGGAGCATGTG 57.907 50.000 0.00 0.00 41.81 3.21
32 33 2.851263 TTTAGAACACGGGAGCATGT 57.149 45.000 0.00 0.00 0.00 3.21
33 34 4.701956 ATTTTTAGAACACGGGAGCATG 57.298 40.909 0.00 0.00 0.00 4.06
34 35 4.764823 TCAATTTTTAGAACACGGGAGCAT 59.235 37.500 0.00 0.00 0.00 3.79
35 36 4.138290 TCAATTTTTAGAACACGGGAGCA 58.862 39.130 0.00 0.00 0.00 4.26
36 37 4.759516 TCAATTTTTAGAACACGGGAGC 57.240 40.909 0.00 0.00 0.00 4.70
37 38 8.040716 ACTATTCAATTTTTAGAACACGGGAG 57.959 34.615 0.00 0.00 0.00 4.30
38 39 7.662258 TGACTATTCAATTTTTAGAACACGGGA 59.338 33.333 0.00 0.00 0.00 5.14
39 40 7.749126 GTGACTATTCAATTTTTAGAACACGGG 59.251 37.037 0.00 0.00 31.90 5.28
40 41 8.286800 TGTGACTATTCAATTTTTAGAACACGG 58.713 33.333 0.00 0.00 31.90 4.94
41 42 9.825972 ATGTGACTATTCAATTTTTAGAACACG 57.174 29.630 0.00 0.00 31.90 4.49
53 54 9.295825 TGAAACACCTAAATGTGACTATTCAAT 57.704 29.630 0.00 0.00 39.57 2.57
54 55 8.684386 TGAAACACCTAAATGTGACTATTCAA 57.316 30.769 0.00 0.00 39.57 2.69
55 56 8.684386 TTGAAACACCTAAATGTGACTATTCA 57.316 30.769 0.00 1.59 39.57 2.57
77 78 9.993454 TCCACAAATGTTCATGAAATTATTTGA 57.007 25.926 33.30 21.49 37.52 2.69
80 81 9.947433 ACATCCACAAATGTTCATGAAATTATT 57.053 25.926 10.35 8.62 36.47 1.40
81 82 9.947433 AACATCCACAAATGTTCATGAAATTAT 57.053 25.926 10.35 2.60 44.53 1.28
96 97 7.361971 GACATATGTCATGTGAACATCCACAAA 60.362 37.037 27.33 0.00 42.59 2.83
97 98 6.093909 GACATATGTCATGTGAACATCCACAA 59.906 38.462 27.33 1.70 42.59 3.33
98 99 5.585844 GACATATGTCATGTGAACATCCACA 59.414 40.000 27.33 0.00 44.18 4.17
99 100 6.052840 GACATATGTCATGTGAACATCCAC 57.947 41.667 27.33 0.00 44.18 4.02
143 144 9.904198 TCTCAATATGTGTTCTGAATTTGGATA 57.096 29.630 0.00 0.00 0.00 2.59
144 145 8.812513 TCTCAATATGTGTTCTGAATTTGGAT 57.187 30.769 0.00 0.00 0.00 3.41
145 146 8.634335 TTCTCAATATGTGTTCTGAATTTGGA 57.366 30.769 0.00 0.00 0.00 3.53
146 147 9.132521 GTTTCTCAATATGTGTTCTGAATTTGG 57.867 33.333 0.00 0.00 0.00 3.28
147 148 9.681692 TGTTTCTCAATATGTGTTCTGAATTTG 57.318 29.630 0.00 0.00 0.00 2.32
174 175 8.711457 CGCTATTCATTCCAAATTTGTCTTTTT 58.289 29.630 16.73 0.00 0.00 1.94
175 176 7.872483 ACGCTATTCATTCCAAATTTGTCTTTT 59.128 29.630 16.73 0.00 0.00 2.27
176 177 7.378181 ACGCTATTCATTCCAAATTTGTCTTT 58.622 30.769 16.73 0.00 0.00 2.52
177 178 6.924111 ACGCTATTCATTCCAAATTTGTCTT 58.076 32.000 16.73 0.00 0.00 3.01
178 179 6.150976 TGACGCTATTCATTCCAAATTTGTCT 59.849 34.615 16.73 0.00 0.00 3.41
179 180 6.321717 TGACGCTATTCATTCCAAATTTGTC 58.678 36.000 16.73 3.94 0.00 3.18
180 181 6.266168 TGACGCTATTCATTCCAAATTTGT 57.734 33.333 16.73 0.00 0.00 2.83
181 182 7.579589 TTTGACGCTATTCATTCCAAATTTG 57.420 32.000 11.40 11.40 0.00 2.32
182 183 8.087750 TCTTTTGACGCTATTCATTCCAAATTT 58.912 29.630 0.00 0.00 0.00 1.82
183 184 7.601856 TCTTTTGACGCTATTCATTCCAAATT 58.398 30.769 0.00 0.00 0.00 1.82
184 185 7.156876 TCTTTTGACGCTATTCATTCCAAAT 57.843 32.000 0.00 0.00 0.00 2.32
185 186 6.567687 TCTTTTGACGCTATTCATTCCAAA 57.432 33.333 0.00 0.00 0.00 3.28
186 187 6.429692 TCTTCTTTTGACGCTATTCATTCCAA 59.570 34.615 0.00 0.00 0.00 3.53
187 188 5.937540 TCTTCTTTTGACGCTATTCATTCCA 59.062 36.000 0.00 0.00 0.00 3.53
188 189 6.128282 TGTCTTCTTTTGACGCTATTCATTCC 60.128 38.462 0.00 0.00 37.26 3.01
189 190 6.831769 TGTCTTCTTTTGACGCTATTCATTC 58.168 36.000 0.00 0.00 37.26 2.67
190 191 6.801539 TGTCTTCTTTTGACGCTATTCATT 57.198 33.333 0.00 0.00 37.26 2.57
191 192 6.650807 TCTTGTCTTCTTTTGACGCTATTCAT 59.349 34.615 0.00 0.00 37.26 2.57
192 193 5.989168 TCTTGTCTTCTTTTGACGCTATTCA 59.011 36.000 0.00 0.00 37.26 2.57
193 194 6.073765 TGTCTTGTCTTCTTTTGACGCTATTC 60.074 38.462 0.00 0.00 37.26 1.75
194 195 5.758296 TGTCTTGTCTTCTTTTGACGCTATT 59.242 36.000 0.00 0.00 37.26 1.73
195 196 5.297547 TGTCTTGTCTTCTTTTGACGCTAT 58.702 37.500 0.00 0.00 37.26 2.97
196 197 4.689071 TGTCTTGTCTTCTTTTGACGCTA 58.311 39.130 0.00 0.00 37.26 4.26
197 198 3.531538 TGTCTTGTCTTCTTTTGACGCT 58.468 40.909 0.00 0.00 37.26 5.07
198 199 3.944422 TGTCTTGTCTTCTTTTGACGC 57.056 42.857 0.00 0.00 37.26 5.19
199 200 5.657470 TCATGTCTTGTCTTCTTTTGACG 57.343 39.130 0.00 0.00 37.26 4.35
200 201 8.778358 ACTATTCATGTCTTGTCTTCTTTTGAC 58.222 33.333 0.00 0.00 35.21 3.18
201 202 8.908786 ACTATTCATGTCTTGTCTTCTTTTGA 57.091 30.769 0.00 0.00 0.00 2.69
214 215 9.289782 GCCCTAAAAATGATACTATTCATGTCT 57.710 33.333 0.00 0.00 36.48 3.41
215 216 9.066892 TGCCCTAAAAATGATACTATTCATGTC 57.933 33.333 0.00 0.00 36.48 3.06
216 217 8.995027 TGCCCTAAAAATGATACTATTCATGT 57.005 30.769 0.00 0.00 36.48 3.21
217 218 9.850628 CATGCCCTAAAAATGATACTATTCATG 57.149 33.333 0.00 0.00 36.48 3.07
218 219 9.592196 ACATGCCCTAAAAATGATACTATTCAT 57.408 29.630 0.00 0.00 37.96 2.57
219 220 8.995027 ACATGCCCTAAAAATGATACTATTCA 57.005 30.769 0.00 0.00 0.00 2.57
222 223 9.726438 GACTACATGCCCTAAAAATGATACTAT 57.274 33.333 0.00 0.00 0.00 2.12
223 224 8.710239 TGACTACATGCCCTAAAAATGATACTA 58.290 33.333 0.00 0.00 0.00 1.82
224 225 7.499232 GTGACTACATGCCCTAAAAATGATACT 59.501 37.037 0.00 0.00 0.00 2.12
225 226 7.282224 TGTGACTACATGCCCTAAAAATGATAC 59.718 37.037 0.00 0.00 0.00 2.24
226 227 7.342581 TGTGACTACATGCCCTAAAAATGATA 58.657 34.615 0.00 0.00 0.00 2.15
227 228 6.186957 TGTGACTACATGCCCTAAAAATGAT 58.813 36.000 0.00 0.00 0.00 2.45
228 229 5.565509 TGTGACTACATGCCCTAAAAATGA 58.434 37.500 0.00 0.00 0.00 2.57
229 230 5.895636 TGTGACTACATGCCCTAAAAATG 57.104 39.130 0.00 0.00 0.00 2.32
302 303 9.601971 CCATGCATCAATTTTTAAAAAGTCAAG 57.398 29.630 17.72 1.52 0.00 3.02
303 304 9.118300 ACCATGCATCAATTTTTAAAAAGTCAA 57.882 25.926 17.72 7.22 0.00 3.18
304 305 8.674263 ACCATGCATCAATTTTTAAAAAGTCA 57.326 26.923 17.72 10.22 0.00 3.41
306 307 8.720562 GCTACCATGCATCAATTTTTAAAAAGT 58.279 29.630 17.72 13.04 0.00 2.66
307 308 8.719648 TGCTACCATGCATCAATTTTTAAAAAG 58.280 29.630 17.72 6.56 38.12 2.27
308 309 8.613060 TGCTACCATGCATCAATTTTTAAAAA 57.387 26.923 15.38 15.38 38.12 1.94
309 310 8.613060 TTGCTACCATGCATCAATTTTTAAAA 57.387 26.923 0.00 0.00 42.96 1.52
310 311 8.093307 TCTTGCTACCATGCATCAATTTTTAAA 58.907 29.630 0.00 0.00 42.96 1.52
311 312 7.609960 TCTTGCTACCATGCATCAATTTTTAA 58.390 30.769 0.00 0.00 42.96 1.52
312 313 7.122501 TCTCTTGCTACCATGCATCAATTTTTA 59.877 33.333 0.00 0.00 42.96 1.52
313 314 6.040209 TCTTGCTACCATGCATCAATTTTT 57.960 33.333 0.00 0.00 42.96 1.94
314 315 5.419788 TCTCTTGCTACCATGCATCAATTTT 59.580 36.000 0.00 0.00 42.96 1.82
315 316 4.951715 TCTCTTGCTACCATGCATCAATTT 59.048 37.500 0.00 0.00 42.96 1.82
316 317 4.529897 TCTCTTGCTACCATGCATCAATT 58.470 39.130 0.00 0.00 42.96 2.32
317 318 4.160642 TCTCTTGCTACCATGCATCAAT 57.839 40.909 0.00 0.00 42.96 2.57
318 319 3.632643 TCTCTTGCTACCATGCATCAA 57.367 42.857 0.00 0.00 42.96 2.57
319 320 3.538591 CTTCTCTTGCTACCATGCATCA 58.461 45.455 0.00 0.00 42.96 3.07
320 321 2.877168 CCTTCTCTTGCTACCATGCATC 59.123 50.000 0.00 0.00 42.96 3.91
321 322 2.422519 CCCTTCTCTTGCTACCATGCAT 60.423 50.000 0.00 0.00 42.96 3.96
322 323 1.065199 CCCTTCTCTTGCTACCATGCA 60.065 52.381 0.00 0.00 41.65 3.96
323 324 1.065126 ACCCTTCTCTTGCTACCATGC 60.065 52.381 0.00 0.00 0.00 4.06
324 325 2.636830 CACCCTTCTCTTGCTACCATG 58.363 52.381 0.00 0.00 0.00 3.66
325 326 1.561542 CCACCCTTCTCTTGCTACCAT 59.438 52.381 0.00 0.00 0.00 3.55
326 327 0.984230 CCACCCTTCTCTTGCTACCA 59.016 55.000 0.00 0.00 0.00 3.25
327 328 0.984995 ACCACCCTTCTCTTGCTACC 59.015 55.000 0.00 0.00 0.00 3.18
328 329 2.832733 AGTACCACCCTTCTCTTGCTAC 59.167 50.000 0.00 0.00 0.00 3.58
329 330 3.097614 GAGTACCACCCTTCTCTTGCTA 58.902 50.000 0.00 0.00 0.00 3.49
330 331 1.903183 GAGTACCACCCTTCTCTTGCT 59.097 52.381 0.00 0.00 0.00 3.91
331 332 1.066071 GGAGTACCACCCTTCTCTTGC 60.066 57.143 0.00 0.00 35.97 4.01
332 333 1.555533 GGGAGTACCACCCTTCTCTTG 59.444 57.143 15.86 0.00 43.65 3.02
333 334 1.954035 GGGAGTACCACCCTTCTCTT 58.046 55.000 15.86 0.00 43.65 2.85
334 335 3.713867 GGGAGTACCACCCTTCTCT 57.286 57.895 15.86 0.00 43.65 3.10
341 342 1.785647 ACGGATAAGGGAGTACCACC 58.214 55.000 0.00 0.00 43.89 4.61
342 343 4.343239 ACATTACGGATAAGGGAGTACCAC 59.657 45.833 0.00 0.00 43.89 4.16
343 344 4.549668 ACATTACGGATAAGGGAGTACCA 58.450 43.478 0.00 0.00 43.89 3.25
344 345 5.772169 ACTACATTACGGATAAGGGAGTACC 59.228 44.000 0.00 0.00 43.04 3.34
345 346 6.675987 CACTACATTACGGATAAGGGAGTAC 58.324 44.000 0.00 0.00 43.00 2.73
346 347 5.242393 GCACTACATTACGGATAAGGGAGTA 59.758 44.000 0.00 0.00 43.00 2.59
347 348 4.038883 GCACTACATTACGGATAAGGGAGT 59.961 45.833 0.00 0.00 45.19 3.85
348 349 4.038763 TGCACTACATTACGGATAAGGGAG 59.961 45.833 0.00 0.00 38.72 4.30
349 350 3.962063 TGCACTACATTACGGATAAGGGA 59.038 43.478 0.00 0.00 0.00 4.20
350 351 4.330944 TGCACTACATTACGGATAAGGG 57.669 45.455 0.00 0.00 0.00 3.95
351 352 8.683615 TCTATATGCACTACATTACGGATAAGG 58.316 37.037 0.00 0.00 40.38 2.69
355 356 9.944376 AAAATCTATATGCACTACATTACGGAT 57.056 29.630 0.00 0.00 40.38 4.18
356 357 9.772973 AAAAATCTATATGCACTACATTACGGA 57.227 29.630 0.00 0.00 40.38 4.69
388 389 9.887406 CGTGGTTAAAGTTTGTATAGTTTGATT 57.113 29.630 0.00 0.00 0.00 2.57
389 390 9.059260 ACGTGGTTAAAGTTTGTATAGTTTGAT 57.941 29.630 0.00 0.00 0.00 2.57
390 391 8.436046 ACGTGGTTAAAGTTTGTATAGTTTGA 57.564 30.769 0.00 0.00 0.00 2.69
391 392 9.505995 AAACGTGGTTAAAGTTTGTATAGTTTG 57.494 29.630 0.00 0.00 36.81 2.93
398 399 9.539825 TCTGTATAAACGTGGTTAAAGTTTGTA 57.460 29.630 0.00 0.00 38.38 2.41
399 400 8.436046 TCTGTATAAACGTGGTTAAAGTTTGT 57.564 30.769 0.00 0.00 38.38 2.83
400 401 9.719279 TTTCTGTATAAACGTGGTTAAAGTTTG 57.281 29.630 0.00 0.00 38.38 2.93
402 403 9.720667 GTTTTCTGTATAAACGTGGTTAAAGTT 57.279 29.630 0.00 0.00 0.00 2.66
403 404 9.112725 AGTTTTCTGTATAAACGTGGTTAAAGT 57.887 29.630 0.00 0.00 39.77 2.66
524 525 9.052759 GGAGAAGTCAAACTGTATAAACTTTGA 57.947 33.333 0.00 0.00 31.16 2.69
525 526 8.836413 TGGAGAAGTCAAACTGTATAAACTTTG 58.164 33.333 0.00 0.00 0.00 2.77
526 527 8.974060 TGGAGAAGTCAAACTGTATAAACTTT 57.026 30.769 0.00 0.00 0.00 2.66
527 528 8.974060 TTGGAGAAGTCAAACTGTATAAACTT 57.026 30.769 0.00 0.00 0.00 2.66
528 529 8.974060 TTTGGAGAAGTCAAACTGTATAAACT 57.026 30.769 0.00 0.00 0.00 2.66
540 541 9.638239 GTGCATATAAATTTTTGGAGAAGTCAA 57.362 29.630 0.00 0.00 0.00 3.18
541 542 9.023962 AGTGCATATAAATTTTTGGAGAAGTCA 57.976 29.630 0.00 0.00 0.00 3.41
555 556 9.970395 CCATTTCACAATGTAGTGCATATAAAT 57.030 29.630 0.00 0.00 38.58 1.40
556 557 9.183368 TCCATTTCACAATGTAGTGCATATAAA 57.817 29.630 0.00 0.00 38.58 1.40
557 558 8.744568 TCCATTTCACAATGTAGTGCATATAA 57.255 30.769 0.00 0.00 38.58 0.98
558 559 7.445096 CCTCCATTTCACAATGTAGTGCATATA 59.555 37.037 0.00 0.00 38.58 0.86
559 560 6.263842 CCTCCATTTCACAATGTAGTGCATAT 59.736 38.462 0.00 0.00 38.58 1.78
560 561 5.589855 CCTCCATTTCACAATGTAGTGCATA 59.410 40.000 0.00 0.00 38.58 3.14
561 562 4.400251 CCTCCATTTCACAATGTAGTGCAT 59.600 41.667 0.00 0.00 38.58 3.96
562 563 3.758023 CCTCCATTTCACAATGTAGTGCA 59.242 43.478 0.00 0.00 38.58 4.57
563 564 4.009675 TCCTCCATTTCACAATGTAGTGC 58.990 43.478 0.00 0.00 38.58 4.40
564 565 5.707298 ACTTCCTCCATTTCACAATGTAGTG 59.293 40.000 0.00 0.00 38.58 2.74
565 566 5.880901 ACTTCCTCCATTTCACAATGTAGT 58.119 37.500 0.00 0.00 38.58 2.73
566 567 7.770433 TGATACTTCCTCCATTTCACAATGTAG 59.230 37.037 0.00 0.00 38.58 2.74
567 568 7.552687 GTGATACTTCCTCCATTTCACAATGTA 59.447 37.037 0.00 0.00 38.58 2.29
568 569 6.375455 GTGATACTTCCTCCATTTCACAATGT 59.625 38.462 0.00 0.00 38.58 2.71
569 570 6.375174 TGTGATACTTCCTCCATTTCACAATG 59.625 38.462 0.00 0.00 39.06 2.82
570 571 6.484288 TGTGATACTTCCTCCATTTCACAAT 58.516 36.000 0.00 0.00 39.06 2.71
571 572 5.875224 TGTGATACTTCCTCCATTTCACAA 58.125 37.500 0.00 0.00 39.06 3.33
572 573 5.497464 TGTGATACTTCCTCCATTTCACA 57.503 39.130 0.00 0.00 39.53 3.58
573 574 6.115446 TCATGTGATACTTCCTCCATTTCAC 58.885 40.000 0.00 0.00 34.16 3.18
574 575 6.312141 TCATGTGATACTTCCTCCATTTCA 57.688 37.500 0.00 0.00 0.00 2.69
575 576 6.769822 ACATCATGTGATACTTCCTCCATTTC 59.230 38.462 0.00 0.00 32.63 2.17
576 577 6.666678 ACATCATGTGATACTTCCTCCATTT 58.333 36.000 0.00 0.00 32.63 2.32
577 578 6.257994 ACATCATGTGATACTTCCTCCATT 57.742 37.500 0.00 0.00 32.63 3.16
578 579 5.901413 ACATCATGTGATACTTCCTCCAT 57.099 39.130 0.00 0.00 32.63 3.41
579 580 5.698741 AACATCATGTGATACTTCCTCCA 57.301 39.130 0.00 0.00 32.63 3.86
580 581 7.012421 GGTAAAACATCATGTGATACTTCCTCC 59.988 40.741 11.20 0.00 32.63 4.30
581 582 7.012421 GGGTAAAACATCATGTGATACTTCCTC 59.988 40.741 11.20 0.00 32.63 3.71
582 583 6.828785 GGGTAAAACATCATGTGATACTTCCT 59.171 38.462 11.20 0.00 32.63 3.36
583 584 6.828785 AGGGTAAAACATCATGTGATACTTCC 59.171 38.462 11.20 6.74 32.63 3.46
584 585 7.865706 AGGGTAAAACATCATGTGATACTTC 57.134 36.000 11.20 6.29 32.63 3.01
585 586 7.065803 CGAAGGGTAAAACATCATGTGATACTT 59.934 37.037 11.20 3.77 32.63 2.24
586 587 6.538742 CGAAGGGTAAAACATCATGTGATACT 59.461 38.462 11.20 0.00 32.63 2.12
624 625 3.861840 TGAAATGTAGGAGTAGCTGTGC 58.138 45.455 0.00 0.00 0.00 4.57
650 651 1.207791 TGCCTCCTCCTCTCCATTTC 58.792 55.000 0.00 0.00 0.00 2.17
659 660 2.839228 ACTACTTGATTGCCTCCTCCT 58.161 47.619 0.00 0.00 0.00 3.69
660 661 4.965200 ATACTACTTGATTGCCTCCTCC 57.035 45.455 0.00 0.00 0.00 4.30
713 718 0.114364 TTGCCTTTCCCTTTCCCCTC 59.886 55.000 0.00 0.00 0.00 4.30
718 728 0.605083 CCTGCTTGCCTTTCCCTTTC 59.395 55.000 0.00 0.00 0.00 2.62
724 734 1.543358 CTTCTTCCCTGCTTGCCTTTC 59.457 52.381 0.00 0.00 0.00 2.62
759 769 0.035439 TACTACTTTGGCTGGCTGGC 60.035 55.000 11.09 11.09 42.18 4.85
760 770 1.279271 AGTACTACTTTGGCTGGCTGG 59.721 52.381 2.00 0.00 0.00 4.85
761 771 2.744202 CAAGTACTACTTTGGCTGGCTG 59.256 50.000 0.00 0.00 36.03 4.85
762 772 2.876079 GCAAGTACTACTTTGGCTGGCT 60.876 50.000 0.00 0.00 36.03 4.75
763 773 1.468914 GCAAGTACTACTTTGGCTGGC 59.531 52.381 0.00 0.00 36.03 4.85
827 843 4.840005 GCCCTACCGCTGCCTGAC 62.840 72.222 0.00 0.00 0.00 3.51
894 913 4.107051 CGCGGCTGCTTTTCCTGG 62.107 66.667 17.03 0.00 39.65 4.45
920 939 5.278512 GGTGGAGTTGATGTTTCTTCCTTTC 60.279 44.000 0.00 0.00 0.00 2.62
932 951 1.625315 TGAGTGGAGGTGGAGTTGATG 59.375 52.381 0.00 0.00 0.00 3.07
933 952 1.905215 CTGAGTGGAGGTGGAGTTGAT 59.095 52.381 0.00 0.00 0.00 2.57
934 953 1.133167 TCTGAGTGGAGGTGGAGTTGA 60.133 52.381 0.00 0.00 0.00 3.18
935 954 1.274728 CTCTGAGTGGAGGTGGAGTTG 59.725 57.143 0.00 0.00 0.00 3.16
936 955 1.638529 CTCTGAGTGGAGGTGGAGTT 58.361 55.000 0.00 0.00 0.00 3.01
938 957 0.902048 TGCTCTGAGTGGAGGTGGAG 60.902 60.000 6.53 0.00 34.21 3.86
939 958 0.902048 CTGCTCTGAGTGGAGGTGGA 60.902 60.000 6.53 0.00 34.21 4.02
940 959 1.190833 ACTGCTCTGAGTGGAGGTGG 61.191 60.000 7.89 0.00 34.21 4.61
941 960 0.037512 CACTGCTCTGAGTGGAGGTG 60.038 60.000 7.89 5.20 39.85 4.00
942 961 1.825281 GCACTGCTCTGAGTGGAGGT 61.825 60.000 7.89 0.00 43.17 3.85
943 962 1.079266 GCACTGCTCTGAGTGGAGG 60.079 63.158 7.89 0.00 43.17 4.30
967 986 2.838813 TCTCTCTCACCGTTAGAGGAGA 59.161 50.000 9.40 8.21 40.77 3.71
969 988 3.269538 CTCTCTCTCACCGTTAGAGGA 57.730 52.381 9.40 5.65 40.77 3.71
1113 1133 1.066257 GCTGCTGTTTGGTGTGGTG 59.934 57.895 0.00 0.00 0.00 4.17
1647 1673 2.043852 ACGAGCTCCCCGATGACT 60.044 61.111 8.47 0.00 0.00 3.41
1687 1713 1.327690 TTGGAGAAGGTAGCCGCGAT 61.328 55.000 8.23 0.00 0.00 4.58
2021 2063 8.581253 AAAGAAAGAAGAAAGGAACAAGAAGA 57.419 30.769 0.00 0.00 0.00 2.87
2022 2064 7.918033 GGAAAGAAAGAAGAAAGGAACAAGAAG 59.082 37.037 0.00 0.00 0.00 2.85
2056 2099 6.376299 ACAACACTGATATGTGAATGAAGCAT 59.624 34.615 1.47 0.00 40.12 3.79
2057 2100 5.706833 ACAACACTGATATGTGAATGAAGCA 59.293 36.000 1.47 0.00 40.12 3.91
2058 2101 6.128200 TGACAACACTGATATGTGAATGAAGC 60.128 38.462 1.47 0.00 40.12 3.86
2059 2102 7.368480 TGACAACACTGATATGTGAATGAAG 57.632 36.000 1.47 0.00 40.12 3.02
2060 2103 7.825761 AGATGACAACACTGATATGTGAATGAA 59.174 33.333 1.47 0.00 40.12 2.57
2061 2104 7.333323 AGATGACAACACTGATATGTGAATGA 58.667 34.615 1.47 0.00 40.12 2.57
2062 2105 7.254692 GGAGATGACAACACTGATATGTGAATG 60.255 40.741 1.47 3.38 40.12 2.67
2063 2106 6.765036 GGAGATGACAACACTGATATGTGAAT 59.235 38.462 1.47 0.00 40.12 2.57
2064 2107 6.108687 GGAGATGACAACACTGATATGTGAA 58.891 40.000 1.47 0.00 40.12 3.18
2065 2108 5.395657 GGGAGATGACAACACTGATATGTGA 60.396 44.000 1.47 0.00 40.12 3.58
2066 2109 4.813161 GGGAGATGACAACACTGATATGTG 59.187 45.833 0.00 0.00 43.07 3.21
2067 2110 4.718774 AGGGAGATGACAACACTGATATGT 59.281 41.667 0.00 0.00 0.00 2.29
2089 2136 8.349983 AGTATAGCAACACCTAAAACAAAACAG 58.650 33.333 0.00 0.00 0.00 3.16
2126 2179 9.461312 ACTGGCAAACAATCAAATCTAACTATA 57.539 29.630 0.00 0.00 0.00 1.31
2127 2180 8.246180 CACTGGCAAACAATCAAATCTAACTAT 58.754 33.333 0.00 0.00 0.00 2.12
2135 2188 2.406130 CGCACTGGCAAACAATCAAAT 58.594 42.857 0.00 0.00 41.24 2.32
2166 2219 5.363562 TTGATTCATCCATGAGCTACTGT 57.636 39.130 0.00 0.00 38.19 3.55
2167 2220 4.755629 CCTTGATTCATCCATGAGCTACTG 59.244 45.833 0.00 0.00 38.19 2.74
2168 2221 4.657504 TCCTTGATTCATCCATGAGCTACT 59.342 41.667 0.00 0.00 38.19 2.57
2169 2222 4.965814 TCCTTGATTCATCCATGAGCTAC 58.034 43.478 0.00 0.00 38.19 3.58
2170 2223 4.903649 TCTCCTTGATTCATCCATGAGCTA 59.096 41.667 0.00 0.00 38.19 3.32
2171 2224 3.715315 TCTCCTTGATTCATCCATGAGCT 59.285 43.478 0.00 0.00 38.19 4.09
2172 2225 4.082665 TCTCCTTGATTCATCCATGAGC 57.917 45.455 0.00 0.00 38.19 4.26
2173 2226 6.038382 CAGTTTCTCCTTGATTCATCCATGAG 59.962 42.308 0.00 0.00 38.19 2.90
2174 2227 5.884232 CAGTTTCTCCTTGATTCATCCATGA 59.116 40.000 0.00 0.00 34.44 3.07
2175 2228 5.450137 GCAGTTTCTCCTTGATTCATCCATG 60.450 44.000 0.00 0.00 0.00 3.66
2176 2229 4.643784 GCAGTTTCTCCTTGATTCATCCAT 59.356 41.667 0.00 0.00 0.00 3.41
2177 2230 4.012374 GCAGTTTCTCCTTGATTCATCCA 58.988 43.478 0.00 0.00 0.00 3.41
2178 2231 4.012374 TGCAGTTTCTCCTTGATTCATCC 58.988 43.478 0.00 0.00 0.00 3.51
2179 2232 5.633830 TTGCAGTTTCTCCTTGATTCATC 57.366 39.130 0.00 0.00 0.00 2.92
2183 2236 5.070847 ACCAAATTGCAGTTTCTCCTTGATT 59.929 36.000 3.92 0.00 0.00 2.57
2206 2259 2.152830 ACTCACTAGTCACCACGAGAC 58.847 52.381 11.45 0.00 36.26 3.36
2213 2266 4.023365 ACGAAACTGTACTCACTAGTCACC 60.023 45.833 0.00 0.00 37.15 4.02
2216 2269 6.437094 AGAAACGAAACTGTACTCACTAGTC 58.563 40.000 0.00 0.00 37.15 2.59
2220 2273 5.873164 ACAAAGAAACGAAACTGTACTCACT 59.127 36.000 0.00 0.00 0.00 3.41
2221 2274 6.103222 ACAAAGAAACGAAACTGTACTCAC 57.897 37.500 0.00 0.00 0.00 3.51
2231 2284 9.465985 ACTTAAAACTTCAACAAAGAAACGAAA 57.534 25.926 0.00 0.00 38.44 3.46
2242 2295 4.393680 AGACGCACACTTAAAACTTCAACA 59.606 37.500 0.00 0.00 0.00 3.33
2243 2296 4.905269 AGACGCACACTTAAAACTTCAAC 58.095 39.130 0.00 0.00 0.00 3.18
2257 2338 1.000506 GGGTGAGAACTTAGACGCACA 59.999 52.381 15.17 0.00 38.25 4.57
2261 2342 3.495670 CTCTGGGTGAGAACTTAGACG 57.504 52.381 0.00 0.00 45.39 4.18
2275 2356 5.640147 AGGAGTTAGATATGAGTCTCTGGG 58.360 45.833 0.65 0.00 0.00 4.45
2302 2383 9.344772 GGAGTTAGATGAGTCTCTCAAATAGTA 57.655 37.037 0.65 0.00 44.04 1.82
2303 2384 8.058847 AGGAGTTAGATGAGTCTCTCAAATAGT 58.941 37.037 0.65 0.00 44.04 2.12
2304 2385 8.463930 AGGAGTTAGATGAGTCTCTCAAATAG 57.536 38.462 0.65 0.00 44.04 1.73
2305 2386 9.344772 GTAGGAGTTAGATGAGTCTCTCAAATA 57.655 37.037 0.65 0.00 44.04 1.40
2306 2387 7.836685 TGTAGGAGTTAGATGAGTCTCTCAAAT 59.163 37.037 0.65 0.00 44.04 2.32
2307 2388 7.175797 TGTAGGAGTTAGATGAGTCTCTCAAA 58.824 38.462 0.65 0.00 44.04 2.69
2308 2389 6.722328 TGTAGGAGTTAGATGAGTCTCTCAA 58.278 40.000 0.65 0.00 44.04 3.02
2309 2390 6.069905 ACTGTAGGAGTTAGATGAGTCTCTCA 60.070 42.308 0.65 1.92 44.99 3.27
2310 2391 6.354130 ACTGTAGGAGTTAGATGAGTCTCTC 58.646 44.000 0.65 0.00 35.87 3.20
2317 2398 9.647918 AGATCAAATACTGTAGGAGTTAGATGA 57.352 33.333 0.00 0.00 35.96 2.92
2328 2409 5.109210 TCCGTGCAAGATCAAATACTGTAG 58.891 41.667 0.00 0.00 0.00 2.74
2332 2413 4.471904 TCTCCGTGCAAGATCAAATACT 57.528 40.909 0.00 0.00 0.00 2.12
2333 2414 5.557136 CGAATCTCCGTGCAAGATCAAATAC 60.557 44.000 0.00 0.00 32.29 1.89
2334 2415 4.507756 CGAATCTCCGTGCAAGATCAAATA 59.492 41.667 0.00 0.00 32.29 1.40
2342 2423 2.809446 TCATACGAATCTCCGTGCAAG 58.191 47.619 0.00 0.00 43.27 4.01
2345 2426 4.795970 AAAATCATACGAATCTCCGTGC 57.204 40.909 0.00 0.00 43.27 5.34
2401 2482 5.704888 ACAAAGTCTCATCTAACTCTCACG 58.295 41.667 0.00 0.00 0.00 4.35
2428 2513 7.479352 TTGCTAATTCCCATCAAAATGAGAA 57.521 32.000 0.00 0.00 34.57 2.87
2433 2518 8.081517 TCAGATTTGCTAATTCCCATCAAAAT 57.918 30.769 0.00 0.00 31.55 1.82
2437 2522 6.189859 ACTTCAGATTTGCTAATTCCCATCA 58.810 36.000 0.00 0.00 0.00 3.07
2442 2527 8.816640 TTCAAAACTTCAGATTTGCTAATTCC 57.183 30.769 5.00 0.00 37.61 3.01
2456 2541 2.790433 AGCCGGCTATTCAAAACTTCA 58.210 42.857 31.86 0.00 0.00 3.02
2465 2550 2.743636 TGCACTATAGCCGGCTATTC 57.256 50.000 44.65 31.12 39.65 1.75
2472 2557 0.937304 ACGCAAATGCACTATAGCCG 59.063 50.000 6.18 0.00 42.21 5.52
2494 2627 9.450807 GCCGATAATTAAATTATACATGATGCC 57.549 33.333 0.00 0.00 35.68 4.40
2527 2660 2.869801 CAACCTCAAGACACGCTAAACA 59.130 45.455 0.00 0.00 0.00 2.83
2558 2709 8.243426 TCAAAGTTTTAAATAGCGAGCAATGAT 58.757 29.630 0.00 0.00 0.00 2.45
2709 2863 3.762407 TGGTTTGGACGAGAGATGAAA 57.238 42.857 0.00 0.00 0.00 2.69
2758 2912 3.351450 CACTCCTGTGTCGTCCGA 58.649 61.111 0.00 0.00 39.24 4.55
2767 2921 1.335964 CGTTGACGATGACACTCCTGT 60.336 52.381 0.00 0.00 43.02 4.00
2799 2953 2.422597 TGTTTACCAACTGCATCTCCG 58.577 47.619 0.00 0.00 33.58 4.63
2816 2970 6.493189 ACATTGGAGGGTAAACAATTTGTT 57.507 33.333 8.97 8.97 43.41 2.83
2824 2978 6.015434 ACAAGATCAAACATTGGAGGGTAAAC 60.015 38.462 0.00 0.00 0.00 2.01
2825 2979 6.074648 ACAAGATCAAACATTGGAGGGTAAA 58.925 36.000 0.00 0.00 0.00 2.01
2863 3017 7.276878 AGCCAAATAAATAAACATAACCAACGC 59.723 33.333 0.00 0.00 0.00 4.84
2915 3069 7.935755 CCTGATACATTGACTAAGACAATCCAT 59.064 37.037 0.00 0.00 36.07 3.41
2916 3070 7.275183 CCTGATACATTGACTAAGACAATCCA 58.725 38.462 0.00 0.00 36.07 3.41
2947 3101 1.071699 TGGTCTGTCCTAAACCACTGC 59.928 52.381 0.00 0.00 38.14 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.