Multiple sequence alignment - TraesCS1A01G042800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G042800 chr1A 100.000 3722 0 0 1 3722 23419851 23423572 0.000000e+00 6874.0
1 TraesCS1A01G042800 chr1A 98.214 112 2 0 474 585 468610714 468610603 2.930000e-46 196.0
2 TraesCS1A01G042800 chr1B 87.096 2875 164 84 607 3350 38224830 38227628 0.000000e+00 3062.0
3 TraesCS1A01G042800 chr1B 97.222 108 3 0 3615 3722 38228204 38228311 2.280000e-42 183.0
4 TraesCS1A01G042800 chr1B 91.270 126 7 3 3344 3465 626226875 626227000 6.390000e-38 169.0
5 TraesCS1A01G042800 chr1B 86.719 128 11 4 3462 3585 38227658 38227783 1.800000e-28 137.0
6 TraesCS1A01G042800 chr1D 87.077 2840 177 89 607 3347 22381691 22378943 0.000000e+00 3037.0
7 TraesCS1A01G042800 chr1D 89.474 266 13 8 3462 3722 22378917 22378662 4.640000e-84 322.0
8 TraesCS1A01G042800 chr1D 90.995 211 19 0 8 218 22382063 22381853 6.080000e-73 285.0
9 TraesCS1A01G042800 chr2A 81.586 353 47 14 2086 2424 29873917 29874265 3.660000e-70 276.0
10 TraesCS1A01G042800 chr2A 92.623 122 6 1 3347 3465 728605430 728605309 4.940000e-39 172.0
11 TraesCS1A01G042800 chr2A 91.870 123 8 1 3345 3465 112691450 112691572 1.780000e-38 171.0
12 TraesCS1A01G042800 chr2A 94.118 51 3 0 3236 3286 38529822 38529872 1.110000e-10 78.7
13 TraesCS1A01G042800 chr7D 90.385 156 11 1 2354 2509 555228954 555229105 6.300000e-48 202.0
14 TraesCS1A01G042800 chr7A 94.215 121 7 0 468 588 39486494 39486614 6.350000e-43 185.0
15 TraesCS1A01G042800 chr7A 91.057 123 9 1 3345 3465 539778256 539778378 8.270000e-37 165.0
16 TraesCS1A01G042800 chr7A 100.000 28 0 0 1643 1670 142652503 142652476 7.000000e-03 52.8
17 TraesCS1A01G042800 chr6A 92.857 126 8 1 469 593 613354347 613354472 8.210000e-42 182.0
18 TraesCS1A01G042800 chr2B 92.800 125 8 1 462 585 715868168 715868292 2.950000e-41 180.0
19 TraesCS1A01G042800 chr2B 96.000 50 2 0 3237 3286 58326028 58325979 8.570000e-12 82.4
20 TraesCS1A01G042800 chr2B 94.000 50 3 0 3237 3286 58517114 58517065 3.990000e-10 76.8
21 TraesCS1A01G042800 chr2B 86.957 69 4 4 3237 3304 58097523 58097587 5.160000e-09 73.1
22 TraesCS1A01G042800 chr3B 92.126 127 9 1 468 593 659785967 659785841 1.060000e-40 178.0
23 TraesCS1A01G042800 chr3B 92.079 101 8 0 999 1099 718350290 718350390 3.870000e-30 143.0
24 TraesCS1A01G042800 chr6B 93.277 119 8 0 469 587 645372993 645372875 3.820000e-40 176.0
25 TraesCS1A01G042800 chr6B 91.935 124 6 2 3346 3465 506295837 506295960 1.780000e-38 171.0
26 TraesCS1A01G042800 chr6B 91.803 122 7 2 3347 3465 39329398 39329519 2.300000e-37 167.0
27 TraesCS1A01G042800 chr2D 92.562 121 9 0 466 586 490824498 490824378 1.370000e-39 174.0
28 TraesCS1A01G042800 chr2D 91.870 123 7 1 3346 3465 62132222 62132344 6.390000e-38 169.0
29 TraesCS1A01G042800 chr2D 92.437 119 6 1 3346 3461 458610725 458610843 2.300000e-37 167.0
30 TraesCS1A01G042800 chr2D 83.486 109 14 3 2051 2157 547032010 547031904 8.510000e-17 99.0
31 TraesCS1A01G042800 chr5A 89.706 136 13 1 460 595 677493326 677493192 4.940000e-39 172.0
32 TraesCS1A01G042800 chr5A 91.870 123 7 1 3346 3465 141195011 141194889 6.390000e-38 169.0
33 TraesCS1A01G042800 chr5A 92.958 71 5 0 2012 2082 672409315 672409385 1.830000e-18 104.0
34 TraesCS1A01G042800 chr5D 90.152 132 10 3 466 594 361646407 361646276 6.390000e-38 169.0
35 TraesCS1A01G042800 chr3D 83.486 109 8 6 949 1055 62345662 62345562 3.960000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G042800 chr1A 23419851 23423572 3721 False 6874.000000 6874 100.000000 1 3722 1 chr1A.!!$F1 3721
1 TraesCS1A01G042800 chr1B 38224830 38228311 3481 False 1127.333333 3062 90.345667 607 3722 3 chr1B.!!$F2 3115
2 TraesCS1A01G042800 chr1D 22378662 22382063 3401 True 1214.666667 3037 89.182000 8 3722 3 chr1D.!!$R1 3714

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
654 675 0.032217 CCCCTCTTGCCTCTCTCTCT 60.032 60.0 0.0 0.0 0.00 3.10 F
983 1045 0.107116 TGACGGAGAGCTAGGAGGTC 60.107 60.0 0.0 0.0 42.72 3.85 F
1580 1695 0.107654 GACGGGGAAAGGGTGATGAG 60.108 60.0 0.0 0.0 0.00 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1966 2104 0.598065 ACGCTCTGCAACCAAATTCC 59.402 50.000 0.0 0.0 0.00 3.01 R
2250 2408 2.577593 GGGTCGAAGAAGGGGTCG 59.422 66.667 0.0 0.0 39.69 4.79 R
3462 3671 0.033699 GAGATGGCCCTGCTTTTCCT 60.034 55.000 0.0 0.0 0.00 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 1.808945 CATCCAGCAGACAAACCAGTC 59.191 52.381 0.00 0.00 38.81 3.51
60 61 3.873952 GACCTAATGATGCACTGTCCTTC 59.126 47.826 0.00 0.00 0.00 3.46
85 86 1.123928 AACCCGGTCAAATTTGCCAA 58.876 45.000 22.88 3.79 0.00 4.52
87 88 0.320334 CCCGGTCAAATTTGCCAACC 60.320 55.000 22.88 19.08 0.00 3.77
91 92 2.223923 CGGTCAAATTTGCCAACCAAGA 60.224 45.455 21.15 0.00 34.34 3.02
94 95 4.821260 GGTCAAATTTGCCAACCAAGAAAT 59.179 37.500 18.13 0.00 34.34 2.17
109 110 9.934190 CAACCAAGAAATTTTTGAAAAGTATGG 57.066 29.630 12.02 11.27 33.95 2.74
110 111 8.153479 ACCAAGAAATTTTTGAAAAGTATGGC 57.847 30.769 12.02 0.00 32.44 4.40
117 118 4.759516 TTTGAAAAGTATGGCTTCGGTC 57.240 40.909 0.00 0.00 36.17 4.79
135 136 2.616765 GGTCTTTTGGAGGGAAGAGAGC 60.617 54.545 0.00 0.00 32.91 4.09
138 139 0.987294 TTTGGAGGGAAGAGAGCAGG 59.013 55.000 0.00 0.00 0.00 4.85
159 160 3.320626 GAAGCTGCCCATCTTCAAAAAC 58.679 45.455 6.92 0.00 38.74 2.43
160 161 2.318908 AGCTGCCCATCTTCAAAAACA 58.681 42.857 0.00 0.00 0.00 2.83
162 163 2.224018 GCTGCCCATCTTCAAAAACACA 60.224 45.455 0.00 0.00 0.00 3.72
166 167 2.289010 CCCATCTTCAAAAACACAGCCC 60.289 50.000 0.00 0.00 0.00 5.19
187 188 4.252878 CCATTTGTTCCACCCTTAATTGC 58.747 43.478 0.00 0.00 0.00 3.56
189 190 2.990740 TGTTCCACCCTTAATTGCCT 57.009 45.000 0.00 0.00 0.00 4.75
206 207 5.385509 TTGCCTTAATTAAGAACAGCACC 57.614 39.130 23.95 5.03 35.33 5.01
218 219 2.119801 ACAGCACCTCCATAGCTTTG 57.880 50.000 0.00 0.00 36.26 2.77
219 220 1.352352 ACAGCACCTCCATAGCTTTGT 59.648 47.619 3.39 0.00 36.26 2.83
220 221 1.741706 CAGCACCTCCATAGCTTTGTG 59.258 52.381 3.39 0.00 36.26 3.33
221 222 0.453390 GCACCTCCATAGCTTTGTGC 59.547 55.000 3.39 2.96 41.75 4.57
235 236 4.920376 GCTTTGTGCTGTAAAACTGAAGA 58.080 39.130 0.00 0.00 38.95 2.87
237 238 5.400485 GCTTTGTGCTGTAAAACTGAAGATG 59.600 40.000 0.00 0.00 38.95 2.90
240 241 4.881273 TGTGCTGTAAAACTGAAGATGTGT 59.119 37.500 0.00 0.00 0.00 3.72
241 242 5.207768 GTGCTGTAAAACTGAAGATGTGTG 58.792 41.667 0.00 0.00 0.00 3.82
242 243 4.222114 GCTGTAAAACTGAAGATGTGTGC 58.778 43.478 0.00 0.00 0.00 4.57
243 244 4.261155 GCTGTAAAACTGAAGATGTGTGCA 60.261 41.667 0.00 0.00 0.00 4.57
244 245 5.168526 TGTAAAACTGAAGATGTGTGCAC 57.831 39.130 10.75 10.75 0.00 4.57
245 246 4.637977 TGTAAAACTGAAGATGTGTGCACA 59.362 37.500 17.42 17.42 46.44 4.57
246 247 3.976793 AAACTGAAGATGTGTGCACAG 57.023 42.857 22.40 8.43 45.48 3.66
247 248 2.627515 ACTGAAGATGTGTGCACAGT 57.372 45.000 22.40 12.48 45.48 3.55
248 249 2.923121 ACTGAAGATGTGTGCACAGTT 58.077 42.857 22.40 10.81 45.48 3.16
249 250 3.282021 ACTGAAGATGTGTGCACAGTTT 58.718 40.909 22.40 12.02 45.48 2.66
250 251 3.696051 ACTGAAGATGTGTGCACAGTTTT 59.304 39.130 22.40 13.38 45.48 2.43
251 252 4.031418 TGAAGATGTGTGCACAGTTTTG 57.969 40.909 22.40 0.00 45.48 2.44
261 262 3.923017 GCACAGTTTTGCATTACCTCT 57.077 42.857 0.00 0.00 42.49 3.69
263 264 5.567138 GCACAGTTTTGCATTACCTCTAT 57.433 39.130 0.00 0.00 42.49 1.98
264 265 5.573146 GCACAGTTTTGCATTACCTCTATC 58.427 41.667 0.00 0.00 42.49 2.08
265 266 5.449177 GCACAGTTTTGCATTACCTCTATCC 60.449 44.000 0.00 0.00 42.49 2.59
266 267 5.647658 CACAGTTTTGCATTACCTCTATCCA 59.352 40.000 0.00 0.00 0.00 3.41
267 268 6.150976 CACAGTTTTGCATTACCTCTATCCAA 59.849 38.462 0.00 0.00 0.00 3.53
268 269 6.719370 ACAGTTTTGCATTACCTCTATCCAAA 59.281 34.615 0.00 0.00 0.00 3.28
269 270 7.232534 ACAGTTTTGCATTACCTCTATCCAAAA 59.767 33.333 0.00 0.00 0.00 2.44
270 271 8.253113 CAGTTTTGCATTACCTCTATCCAAAAT 58.747 33.333 0.00 0.00 34.51 1.82
271 272 8.815912 AGTTTTGCATTACCTCTATCCAAAATT 58.184 29.630 0.00 0.00 34.51 1.82
272 273 9.435688 GTTTTGCATTACCTCTATCCAAAATTT 57.564 29.630 0.00 0.00 34.51 1.82
274 275 9.651913 TTTGCATTACCTCTATCCAAAATTTTC 57.348 29.630 0.00 0.00 0.00 2.29
275 276 8.359875 TGCATTACCTCTATCCAAAATTTTCA 57.640 30.769 0.00 0.00 0.00 2.69
276 277 8.980596 TGCATTACCTCTATCCAAAATTTTCAT 58.019 29.630 0.00 0.00 0.00 2.57
277 278 9.822185 GCATTACCTCTATCCAAAATTTTCATT 57.178 29.630 0.00 0.00 0.00 2.57
299 300 3.907894 TTTTCCGCAAGACAATACCAC 57.092 42.857 0.00 0.00 43.02 4.16
300 301 2.851263 TTCCGCAAGACAATACCACT 57.149 45.000 0.00 0.00 43.02 4.00
301 302 2.851263 TCCGCAAGACAATACCACTT 57.149 45.000 0.00 0.00 43.02 3.16
302 303 2.695359 TCCGCAAGACAATACCACTTC 58.305 47.619 0.00 0.00 43.02 3.01
303 304 2.301870 TCCGCAAGACAATACCACTTCT 59.698 45.455 0.00 0.00 43.02 2.85
304 305 3.512329 TCCGCAAGACAATACCACTTCTA 59.488 43.478 0.00 0.00 43.02 2.10
305 306 3.617263 CCGCAAGACAATACCACTTCTAC 59.383 47.826 0.00 0.00 43.02 2.59
306 307 4.242475 CGCAAGACAATACCACTTCTACA 58.758 43.478 0.00 0.00 43.02 2.74
307 308 4.091509 CGCAAGACAATACCACTTCTACAC 59.908 45.833 0.00 0.00 43.02 2.90
308 309 4.994852 GCAAGACAATACCACTTCTACACA 59.005 41.667 0.00 0.00 0.00 3.72
309 310 5.468746 GCAAGACAATACCACTTCTACACAA 59.531 40.000 0.00 0.00 0.00 3.33
310 311 6.149474 GCAAGACAATACCACTTCTACACAAT 59.851 38.462 0.00 0.00 0.00 2.71
311 312 7.624344 GCAAGACAATACCACTTCTACACAATC 60.624 40.741 0.00 0.00 0.00 2.67
312 313 7.004555 AGACAATACCACTTCTACACAATCA 57.995 36.000 0.00 0.00 0.00 2.57
313 314 7.450074 AGACAATACCACTTCTACACAATCAA 58.550 34.615 0.00 0.00 0.00 2.57
314 315 7.936847 AGACAATACCACTTCTACACAATCAAA 59.063 33.333 0.00 0.00 0.00 2.69
315 316 8.635765 ACAATACCACTTCTACACAATCAAAT 57.364 30.769 0.00 0.00 0.00 2.32
316 317 9.077885 ACAATACCACTTCTACACAATCAAATT 57.922 29.630 0.00 0.00 0.00 1.82
317 318 9.559958 CAATACCACTTCTACACAATCAAATTC 57.440 33.333 0.00 0.00 0.00 2.17
318 319 8.862325 ATACCACTTCTACACAATCAAATTCA 57.138 30.769 0.00 0.00 0.00 2.57
319 320 7.206981 ACCACTTCTACACAATCAAATTCAG 57.793 36.000 0.00 0.00 0.00 3.02
320 321 6.207417 ACCACTTCTACACAATCAAATTCAGG 59.793 38.462 0.00 0.00 0.00 3.86
321 322 6.207417 CCACTTCTACACAATCAAATTCAGGT 59.793 38.462 0.00 0.00 0.00 4.00
322 323 7.080099 CACTTCTACACAATCAAATTCAGGTG 58.920 38.462 0.00 0.00 0.00 4.00
323 324 6.772716 ACTTCTACACAATCAAATTCAGGTGT 59.227 34.615 0.00 0.00 41.76 4.16
324 325 7.936847 ACTTCTACACAATCAAATTCAGGTGTA 59.063 33.333 0.00 0.00 39.82 2.90
326 327 5.376854 ACACAATCAAATTCAGGTGTAGC 57.623 39.130 0.00 0.00 37.68 3.58
327 328 4.218417 ACACAATCAAATTCAGGTGTAGCC 59.782 41.667 0.00 0.00 37.68 3.93
329 330 4.702131 ACAATCAAATTCAGGTGTAGCCTC 59.298 41.667 0.00 0.00 46.96 4.70
330 331 3.350219 TCAAATTCAGGTGTAGCCTCC 57.650 47.619 0.00 0.00 46.96 4.30
331 332 2.642311 TCAAATTCAGGTGTAGCCTCCA 59.358 45.455 0.00 0.00 46.96 3.86
332 333 3.266772 TCAAATTCAGGTGTAGCCTCCAT 59.733 43.478 0.00 0.00 46.96 3.41
333 334 4.019174 CAAATTCAGGTGTAGCCTCCATT 58.981 43.478 0.00 0.00 46.96 3.16
334 335 2.787473 TTCAGGTGTAGCCTCCATTG 57.213 50.000 0.00 0.00 46.96 2.82
335 336 0.911769 TCAGGTGTAGCCTCCATTGG 59.088 55.000 0.00 0.00 46.96 3.16
336 337 0.620556 CAGGTGTAGCCTCCATTGGT 59.379 55.000 1.86 0.00 46.96 3.67
337 338 1.004745 CAGGTGTAGCCTCCATTGGTT 59.995 52.381 1.86 0.00 46.96 3.67
338 339 1.710809 AGGTGTAGCCTCCATTGGTTT 59.289 47.619 1.86 0.00 46.96 3.27
339 340 1.818674 GGTGTAGCCTCCATTGGTTTG 59.181 52.381 1.86 0.00 0.00 2.93
340 341 2.514803 GTGTAGCCTCCATTGGTTTGT 58.485 47.619 1.86 0.00 0.00 2.83
341 342 3.560453 GGTGTAGCCTCCATTGGTTTGTA 60.560 47.826 1.86 0.00 0.00 2.41
342 343 3.439129 GTGTAGCCTCCATTGGTTTGTAC 59.561 47.826 1.86 2.50 0.00 2.90
343 344 2.969821 AGCCTCCATTGGTTTGTACA 57.030 45.000 1.86 0.00 0.00 2.90
344 345 3.456380 AGCCTCCATTGGTTTGTACAT 57.544 42.857 1.86 0.00 0.00 2.29
345 346 3.091545 AGCCTCCATTGGTTTGTACATG 58.908 45.455 1.86 0.00 0.00 3.21
346 347 2.825532 GCCTCCATTGGTTTGTACATGT 59.174 45.455 2.69 2.69 0.00 3.21
347 348 3.258123 GCCTCCATTGGTTTGTACATGTT 59.742 43.478 2.30 0.00 0.00 2.71
348 349 4.262420 GCCTCCATTGGTTTGTACATGTTT 60.262 41.667 2.30 0.00 0.00 2.83
349 350 5.047660 GCCTCCATTGGTTTGTACATGTTTA 60.048 40.000 2.30 0.00 0.00 2.01
350 351 6.350949 GCCTCCATTGGTTTGTACATGTTTAT 60.351 38.462 2.30 0.00 0.00 1.40
351 352 7.257722 CCTCCATTGGTTTGTACATGTTTATC 58.742 38.462 2.30 0.00 0.00 1.75
352 353 7.164230 TCCATTGGTTTGTACATGTTTATCC 57.836 36.000 2.30 1.83 0.00 2.59
353 354 6.951198 TCCATTGGTTTGTACATGTTTATCCT 59.049 34.615 2.30 0.00 0.00 3.24
354 355 8.110271 TCCATTGGTTTGTACATGTTTATCCTA 58.890 33.333 2.30 0.00 0.00 2.94
355 356 8.912988 CCATTGGTTTGTACATGTTTATCCTAT 58.087 33.333 2.30 1.29 0.00 2.57
373 374 9.974980 TTATCCTATTTTTGTGTCTTTCAAACC 57.025 29.630 0.00 0.00 35.05 3.27
374 375 6.811954 TCCTATTTTTGTGTCTTTCAAACCC 58.188 36.000 0.00 0.00 35.05 4.11
375 376 5.989168 CCTATTTTTGTGTCTTTCAAACCCC 59.011 40.000 0.00 0.00 35.05 4.95
376 377 4.891992 TTTTTGTGTCTTTCAAACCCCA 57.108 36.364 0.00 0.00 35.05 4.96
377 378 5.428184 TTTTTGTGTCTTTCAAACCCCAT 57.572 34.783 0.00 0.00 35.05 4.00
378 379 4.399004 TTTGTGTCTTTCAAACCCCATG 57.601 40.909 0.00 0.00 31.17 3.66
379 380 3.304911 TGTGTCTTTCAAACCCCATGA 57.695 42.857 0.00 0.00 0.00 3.07
380 381 3.843422 TGTGTCTTTCAAACCCCATGAT 58.157 40.909 0.00 0.00 0.00 2.45
381 382 3.826157 TGTGTCTTTCAAACCCCATGATC 59.174 43.478 0.00 0.00 0.00 2.92
382 383 3.193479 GTGTCTTTCAAACCCCATGATCC 59.807 47.826 0.00 0.00 0.00 3.36
383 384 3.181424 TGTCTTTCAAACCCCATGATCCA 60.181 43.478 0.00 0.00 0.00 3.41
384 385 3.831911 GTCTTTCAAACCCCATGATCCAA 59.168 43.478 0.00 0.00 0.00 3.53
385 386 4.283212 GTCTTTCAAACCCCATGATCCAAA 59.717 41.667 0.00 0.00 0.00 3.28
386 387 4.904251 TCTTTCAAACCCCATGATCCAAAA 59.096 37.500 0.00 0.00 0.00 2.44
387 388 4.888326 TTCAAACCCCATGATCCAAAAG 57.112 40.909 0.00 0.00 0.00 2.27
388 389 3.172339 TCAAACCCCATGATCCAAAAGG 58.828 45.455 0.00 0.00 0.00 3.11
389 390 1.571955 AACCCCATGATCCAAAAGGC 58.428 50.000 0.00 0.00 0.00 4.35
390 391 0.712380 ACCCCATGATCCAAAAGGCT 59.288 50.000 0.00 0.00 0.00 4.58
391 392 1.079323 ACCCCATGATCCAAAAGGCTT 59.921 47.619 0.00 0.00 0.00 4.35
392 393 2.190538 CCCCATGATCCAAAAGGCTTT 58.809 47.619 6.68 6.68 0.00 3.51
393 394 2.573009 CCCCATGATCCAAAAGGCTTTT 59.427 45.455 19.14 19.14 0.00 2.27
394 395 3.369787 CCCCATGATCCAAAAGGCTTTTC 60.370 47.826 21.77 11.82 0.00 2.29
395 396 3.369787 CCCATGATCCAAAAGGCTTTTCC 60.370 47.826 21.77 11.83 0.00 3.13
396 397 3.261390 CCATGATCCAAAAGGCTTTTCCA 59.739 43.478 21.77 16.34 37.29 3.53
397 398 4.080751 CCATGATCCAAAAGGCTTTTCCAT 60.081 41.667 21.77 15.75 37.29 3.41
398 399 5.493809 CATGATCCAAAAGGCTTTTCCATT 58.506 37.500 21.77 7.80 37.29 3.16
399 400 5.565455 TGATCCAAAAGGCTTTTCCATTT 57.435 34.783 21.77 6.13 36.26 2.32
400 401 6.678568 TGATCCAAAAGGCTTTTCCATTTA 57.321 33.333 21.77 5.32 34.27 1.40
401 402 7.072263 TGATCCAAAAGGCTTTTCCATTTAA 57.928 32.000 21.77 3.08 34.27 1.52
402 403 7.512992 TGATCCAAAAGGCTTTTCCATTTAAA 58.487 30.769 21.77 1.69 34.27 1.52
403 404 8.162746 TGATCCAAAAGGCTTTTCCATTTAAAT 58.837 29.630 21.77 7.17 34.27 1.40
404 405 9.665719 GATCCAAAAGGCTTTTCCATTTAAATA 57.334 29.630 21.77 0.11 34.27 1.40
458 459 1.669440 GTGTAGCCTCCACCGTCAA 59.331 57.895 0.00 0.00 0.00 3.18
463 464 0.106918 AGCCTCCACCGTCAAAAACA 60.107 50.000 0.00 0.00 0.00 2.83
467 468 3.004944 GCCTCCACCGTCAAAAACAAATA 59.995 43.478 0.00 0.00 0.00 1.40
468 469 4.321675 GCCTCCACCGTCAAAAACAAATAT 60.322 41.667 0.00 0.00 0.00 1.28
473 474 7.586747 TCCACCGTCAAAAACAAATATACTTC 58.413 34.615 0.00 0.00 0.00 3.01
474 475 6.804783 CCACCGTCAAAAACAAATATACTTCC 59.195 38.462 0.00 0.00 0.00 3.46
475 476 7.308951 CCACCGTCAAAAACAAATATACTTCCT 60.309 37.037 0.00 0.00 0.00 3.36
477 478 7.094506 ACCGTCAAAAACAAATATACTTCCTCC 60.095 37.037 0.00 0.00 0.00 4.30
478 479 6.959311 CGTCAAAAACAAATATACTTCCTCCG 59.041 38.462 0.00 0.00 0.00 4.63
480 481 7.961283 GTCAAAAACAAATATACTTCCTCCGTC 59.039 37.037 0.00 0.00 0.00 4.79
482 483 4.317671 ACAAATATACTTCCTCCGTCCG 57.682 45.455 0.00 0.00 0.00 4.79
483 484 3.069158 ACAAATATACTTCCTCCGTCCGG 59.931 47.826 0.00 0.00 0.00 5.14
484 485 2.965671 ATATACTTCCTCCGTCCGGA 57.034 50.000 0.00 0.00 42.90 5.14
485 486 2.734755 TATACTTCCTCCGTCCGGAA 57.265 50.000 5.23 0.00 44.66 4.30
486 487 1.856629 ATACTTCCTCCGTCCGGAAA 58.143 50.000 5.23 1.47 44.66 3.13
488 489 1.856629 ACTTCCTCCGTCCGGAAATA 58.143 50.000 5.23 0.00 44.66 1.40
489 490 1.479730 ACTTCCTCCGTCCGGAAATAC 59.520 52.381 5.23 0.00 44.66 1.89
491 492 1.856629 TCCTCCGTCCGGAAATACTT 58.143 50.000 5.23 0.00 44.66 2.24
493 494 3.569491 TCCTCCGTCCGGAAATACTTAT 58.431 45.455 5.23 0.00 44.66 1.73
494 495 3.571401 TCCTCCGTCCGGAAATACTTATC 59.429 47.826 5.23 0.00 44.66 1.75
495 496 3.562505 CTCCGTCCGGAAATACTTATCG 58.437 50.000 5.23 1.25 44.66 2.92
496 497 2.294233 TCCGTCCGGAAATACTTATCGG 59.706 50.000 5.23 12.24 42.05 4.18
497 498 2.294233 CCGTCCGGAAATACTTATCGGA 59.706 50.000 16.82 0.00 46.06 4.55
500 501 3.836146 TCCGGAAATACTTATCGGAGGA 58.164 45.455 0.00 0.00 43.84 3.71
501 502 4.217510 TCCGGAAATACTTATCGGAGGAA 58.782 43.478 0.00 0.00 43.84 3.36
502 503 4.836736 TCCGGAAATACTTATCGGAGGAAT 59.163 41.667 0.00 0.00 43.84 3.01
503 504 4.929808 CCGGAAATACTTATCGGAGGAATG 59.070 45.833 0.00 0.00 42.94 2.67
504 505 5.279306 CCGGAAATACTTATCGGAGGAATGA 60.279 44.000 0.00 0.00 42.94 2.57
505 506 6.220930 CGGAAATACTTATCGGAGGAATGAA 58.779 40.000 0.00 0.00 0.00 2.57
506 507 6.874134 CGGAAATACTTATCGGAGGAATGAAT 59.126 38.462 0.00 0.00 0.00 2.57
507 508 7.148573 CGGAAATACTTATCGGAGGAATGAATG 60.149 40.741 0.00 0.00 0.00 2.67
508 509 7.661847 GGAAATACTTATCGGAGGAATGAATGT 59.338 37.037 0.00 0.00 0.00 2.71
509 510 9.706691 GAAATACTTATCGGAGGAATGAATGTA 57.293 33.333 0.00 0.00 0.00 2.29
511 512 9.877178 AATACTTATCGGAGGAATGAATGTATC 57.123 33.333 0.00 0.00 0.00 2.24
512 513 7.546250 ACTTATCGGAGGAATGAATGTATCT 57.454 36.000 0.00 0.00 0.00 1.98
513 514 8.651589 ACTTATCGGAGGAATGAATGTATCTA 57.348 34.615 0.00 0.00 0.00 1.98
514 515 8.744652 ACTTATCGGAGGAATGAATGTATCTAG 58.255 37.037 0.00 0.00 0.00 2.43
515 516 8.879427 TTATCGGAGGAATGAATGTATCTAGA 57.121 34.615 0.00 0.00 0.00 2.43
516 517 7.969690 ATCGGAGGAATGAATGTATCTAGAT 57.030 36.000 10.73 10.73 0.00 1.98
517 518 7.163001 TCGGAGGAATGAATGTATCTAGATG 57.837 40.000 15.79 0.00 0.00 2.90
518 519 6.721668 TCGGAGGAATGAATGTATCTAGATGT 59.278 38.462 15.79 0.00 0.00 3.06
519 520 7.888546 TCGGAGGAATGAATGTATCTAGATGTA 59.111 37.037 15.79 4.44 0.00 2.29
520 521 8.690884 CGGAGGAATGAATGTATCTAGATGTAT 58.309 37.037 15.79 6.61 0.00 2.29
561 562 9.586150 CATTCATTTTTATCTATTTCTCCGACG 57.414 33.333 0.00 0.00 0.00 5.12
562 563 8.936070 TTCATTTTTATCTATTTCTCCGACGA 57.064 30.769 0.00 0.00 0.00 4.20
563 564 8.575565 TCATTTTTATCTATTTCTCCGACGAG 57.424 34.615 0.00 0.00 37.48 4.18
564 565 8.195436 TCATTTTTATCTATTTCTCCGACGAGT 58.805 33.333 0.00 0.00 37.40 4.18
565 566 9.459640 CATTTTTATCTATTTCTCCGACGAGTA 57.540 33.333 0.00 0.00 37.40 2.59
569 570 9.674824 TTTATCTATTTCTCCGACGAGTAATTC 57.325 33.333 0.00 0.00 37.34 2.17
570 571 6.939132 TCTATTTCTCCGACGAGTAATTCT 57.061 37.500 0.00 0.00 37.34 2.40
571 572 6.726230 TCTATTTCTCCGACGAGTAATTCTG 58.274 40.000 0.00 0.00 37.34 3.02
572 573 3.777465 TTCTCCGACGAGTAATTCTGG 57.223 47.619 0.00 0.00 37.40 3.86
573 574 2.995283 TCTCCGACGAGTAATTCTGGA 58.005 47.619 0.00 0.00 37.40 3.86
574 575 2.681848 TCTCCGACGAGTAATTCTGGAC 59.318 50.000 0.00 0.00 37.40 4.02
575 576 1.399440 TCCGACGAGTAATTCTGGACG 59.601 52.381 0.00 0.00 38.91 4.79
576 577 1.823828 CGACGAGTAATTCTGGACGG 58.176 55.000 0.00 0.00 36.75 4.79
577 578 1.399440 CGACGAGTAATTCTGGACGGA 59.601 52.381 0.00 0.00 36.75 4.69
578 579 2.539142 CGACGAGTAATTCTGGACGGAG 60.539 54.545 0.00 0.00 36.75 4.63
579 580 1.749634 ACGAGTAATTCTGGACGGAGG 59.250 52.381 0.00 0.00 0.00 4.30
580 581 1.067212 CGAGTAATTCTGGACGGAGGG 59.933 57.143 0.00 0.00 0.00 4.30
581 582 2.385803 GAGTAATTCTGGACGGAGGGA 58.614 52.381 0.00 0.00 0.00 4.20
582 583 2.362717 GAGTAATTCTGGACGGAGGGAG 59.637 54.545 0.00 0.00 0.00 4.30
602 603 5.221441 GGGAGTACAATTTCAGGCACTTTTT 60.221 40.000 0.00 0.00 34.60 1.94
641 659 0.178961 GAAAAGTGGTTGGCCCCTCT 60.179 55.000 0.00 0.00 0.00 3.69
642 660 0.264657 AAAAGTGGTTGGCCCCTCTT 59.735 50.000 0.00 4.81 39.39 2.85
643 661 0.469892 AAAGTGGTTGGCCCCTCTTG 60.470 55.000 13.95 0.00 38.12 3.02
654 675 0.032217 CCCCTCTTGCCTCTCTCTCT 60.032 60.000 0.00 0.00 0.00 3.10
655 676 1.402787 CCCTCTTGCCTCTCTCTCTC 58.597 60.000 0.00 0.00 0.00 3.20
656 677 1.063717 CCCTCTTGCCTCTCTCTCTCT 60.064 57.143 0.00 0.00 0.00 3.10
659 680 3.355378 CTCTTGCCTCTCTCTCTCTCAA 58.645 50.000 0.00 0.00 0.00 3.02
662 683 3.168035 TGCCTCTCTCTCTCTCAAAGT 57.832 47.619 0.00 0.00 0.00 2.66
689 712 5.757850 TTTTCTTTCTCTCTCCTTGTTGC 57.242 39.130 0.00 0.00 0.00 4.17
690 713 4.422073 TTCTTTCTCTCTCCTTGTTGCA 57.578 40.909 0.00 0.00 0.00 4.08
691 714 4.422073 TCTTTCTCTCTCCTTGTTGCAA 57.578 40.909 0.00 0.00 0.00 4.08
692 715 4.384056 TCTTTCTCTCTCCTTGTTGCAAG 58.616 43.478 0.00 2.16 0.00 4.01
693 716 2.847327 TCTCTCTCCTTGTTGCAAGG 57.153 50.000 18.89 18.89 38.78 3.61
694 717 2.329267 TCTCTCTCCTTGTTGCAAGGA 58.671 47.619 23.98 23.98 43.74 3.36
766 790 2.224892 GCTCCATAATTTCCTCCCCTCC 60.225 54.545 0.00 0.00 0.00 4.30
865 902 0.121197 TCCCATCAAACCTCCCTCCT 59.879 55.000 0.00 0.00 0.00 3.69
866 903 0.548510 CCCATCAAACCTCCCTCCTC 59.451 60.000 0.00 0.00 0.00 3.71
867 904 0.548510 CCATCAAACCTCCCTCCTCC 59.451 60.000 0.00 0.00 0.00 4.30
868 905 0.548510 CATCAAACCTCCCTCCTCCC 59.451 60.000 0.00 0.00 0.00 4.30
869 906 0.423544 ATCAAACCTCCCTCCTCCCT 59.576 55.000 0.00 0.00 0.00 4.20
870 907 0.252742 TCAAACCTCCCTCCTCCCTC 60.253 60.000 0.00 0.00 0.00 4.30
871 908 1.083141 AAACCTCCCTCCTCCCTCC 59.917 63.158 0.00 0.00 0.00 4.30
872 909 2.494151 AAACCTCCCTCCTCCCTCCC 62.494 65.000 0.00 0.00 0.00 4.30
873 910 4.179599 CCTCCCTCCTCCCTCCCC 62.180 77.778 0.00 0.00 0.00 4.81
874 911 3.039526 CTCCCTCCTCCCTCCCCT 61.040 72.222 0.00 0.00 0.00 4.79
884 933 4.038804 CCTCCCCTCCTCCCCCAA 62.039 72.222 0.00 0.00 0.00 4.12
902 951 4.106925 CACCAGCAGCCCTCCTCC 62.107 72.222 0.00 0.00 0.00 4.30
903 952 4.664267 ACCAGCAGCCCTCCTCCA 62.664 66.667 0.00 0.00 0.00 3.86
983 1045 0.107116 TGACGGAGAGCTAGGAGGTC 60.107 60.000 0.00 0.00 42.72 3.85
989 1051 2.028876 GAGAGCTAGGAGGTCAAGGAC 58.971 57.143 8.28 0.00 44.69 3.85
1062 1124 1.293498 CACCACCCTCTTCTCCACG 59.707 63.158 0.00 0.00 0.00 4.94
1107 1169 4.394712 CCCCAGGAGGTGCGTGAC 62.395 72.222 0.00 0.00 34.35 3.67
1122 1184 2.391130 TGACTTGCCCCCACAACCT 61.391 57.895 0.00 0.00 0.00 3.50
1152 1214 4.503991 CCCCTGCAATTACTCTCCTGTATC 60.504 50.000 0.00 0.00 0.00 2.24
1304 1391 0.329596 AAGAAGGGTTAGGCAGGCAG 59.670 55.000 0.00 0.00 0.00 4.85
1347 1434 2.485122 CTTGGCGTGCCGGAATTC 59.515 61.111 5.05 0.00 39.42 2.17
1384 1481 0.535780 TTCCATGCTCCGATCCATGC 60.536 55.000 4.62 0.00 37.96 4.06
1385 1482 1.970114 CCATGCTCCGATCCATGCC 60.970 63.158 4.62 0.00 37.96 4.40
1387 1484 3.541950 ATGCTCCGATCCATGCCGG 62.542 63.158 0.00 0.00 46.57 6.13
1415 1523 5.954296 TGTAGTACTTAACTTGCTCGAGT 57.046 39.130 15.13 0.00 39.80 4.18
1482 1596 3.974293 GCCTTTTCCCCGTCCCCA 61.974 66.667 0.00 0.00 0.00 4.96
1514 1628 1.199624 CAAAAGTTCGGCACTGTTGC 58.800 50.000 0.00 0.00 42.69 4.17
1527 1641 2.747460 GTTGCGGGATGCTCTGCA 60.747 61.111 5.02 5.02 46.11 4.41
1574 1688 3.001406 CCGAGACGGGGAAAGGGT 61.001 66.667 2.00 0.00 44.15 4.34
1580 1695 0.107654 GACGGGGAAAGGGTGATGAG 60.108 60.000 0.00 0.00 0.00 2.90
1654 1770 2.259511 CGAGCCCAAAGCCAAAGC 59.740 61.111 0.00 0.00 45.47 3.51
1655 1771 2.659016 GAGCCCAAAGCCAAAGCC 59.341 61.111 0.00 0.00 45.47 4.35
1656 1772 2.122901 AGCCCAAAGCCAAAGCCA 60.123 55.556 0.00 0.00 45.47 4.75
1657 1773 1.757423 GAGCCCAAAGCCAAAGCCAA 61.757 55.000 0.00 0.00 45.47 4.52
1658 1774 1.148048 GCCCAAAGCCAAAGCCAAA 59.852 52.632 0.00 0.00 41.25 3.28
1659 1775 0.886043 GCCCAAAGCCAAAGCCAAAG 60.886 55.000 0.00 0.00 41.25 2.77
1660 1776 0.886043 CCCAAAGCCAAAGCCAAAGC 60.886 55.000 0.00 0.00 41.25 3.51
1661 1777 0.886043 CCAAAGCCAAAGCCAAAGCC 60.886 55.000 0.00 0.00 41.25 4.35
1662 1778 0.179051 CAAAGCCAAAGCCAAAGCCA 60.179 50.000 0.00 0.00 41.25 4.75
1663 1779 0.545646 AAAGCCAAAGCCAAAGCCAA 59.454 45.000 0.00 0.00 41.25 4.52
1770 1899 1.463674 CTCCGAGGATTGGTTTTGGG 58.536 55.000 0.00 0.00 41.84 4.12
1813 1950 1.336240 GCCTTGTGCTTGGTGAATCAC 60.336 52.381 4.51 4.51 36.87 3.06
1832 1969 2.192979 GCCCCATCATCGCCTTGA 59.807 61.111 0.00 0.00 0.00 3.02
1856 1993 8.558973 GATCCTAGGATCGAATCATTGATTTT 57.441 34.615 31.23 2.63 41.09 1.82
1857 1994 7.734924 TCCTAGGATCGAATCATTGATTTTG 57.265 36.000 7.62 9.21 31.89 2.44
1858 1995 7.508687 TCCTAGGATCGAATCATTGATTTTGA 58.491 34.615 7.62 13.60 31.89 2.69
1859 1996 8.159447 TCCTAGGATCGAATCATTGATTTTGAT 58.841 33.333 19.65 19.65 35.35 2.57
1860 1997 8.790718 CCTAGGATCGAATCATTGATTTTGATT 58.209 33.333 20.14 12.80 44.40 2.57
1867 2004 6.835029 AATCATTGATTTTGATTCCCCCAT 57.165 33.333 6.06 0.00 39.06 4.00
1868 2005 5.874897 TCATTGATTTTGATTCCCCCATC 57.125 39.130 0.00 0.00 0.00 3.51
1869 2006 4.655186 TCATTGATTTTGATTCCCCCATCC 59.345 41.667 0.00 0.00 0.00 3.51
1870 2007 2.665165 TGATTTTGATTCCCCCATCCG 58.335 47.619 0.00 0.00 0.00 4.18
1871 2008 2.243478 TGATTTTGATTCCCCCATCCGA 59.757 45.455 0.00 0.00 0.00 4.55
1872 2009 3.117169 TGATTTTGATTCCCCCATCCGAT 60.117 43.478 0.00 0.00 0.00 4.18
1911 2048 1.288752 CCATGGTTGGTGCGGAAAC 59.711 57.895 2.57 0.00 38.30 2.78
1934 2071 4.119136 GGTGGTGTTTGAGGTTGATTTTG 58.881 43.478 0.00 0.00 0.00 2.44
1939 2077 2.969262 GTTTGAGGTTGATTTTGGGGGA 59.031 45.455 0.00 0.00 0.00 4.81
1944 2082 2.386811 AGGTTGATTTTGGGGGAAGGAT 59.613 45.455 0.00 0.00 0.00 3.24
1945 2083 2.501316 GGTTGATTTTGGGGGAAGGATG 59.499 50.000 0.00 0.00 0.00 3.51
1950 2088 3.576197 TTTTGGGGGAAGGATGGAAAT 57.424 42.857 0.00 0.00 0.00 2.17
1951 2089 2.548464 TTGGGGGAAGGATGGAAATG 57.452 50.000 0.00 0.00 0.00 2.32
1952 2090 1.392407 TGGGGGAAGGATGGAAATGT 58.608 50.000 0.00 0.00 0.00 2.71
1953 2091 1.721691 TGGGGGAAGGATGGAAATGTT 59.278 47.619 0.00 0.00 0.00 2.71
1954 2092 2.110578 GGGGGAAGGATGGAAATGTTG 58.889 52.381 0.00 0.00 0.00 3.33
1955 2093 2.292192 GGGGGAAGGATGGAAATGTTGA 60.292 50.000 0.00 0.00 0.00 3.18
1956 2094 3.630828 GGGGGAAGGATGGAAATGTTGAT 60.631 47.826 0.00 0.00 0.00 2.57
1957 2095 3.638627 GGGGAAGGATGGAAATGTTGATC 59.361 47.826 0.00 0.00 0.00 2.92
1958 2096 4.540715 GGGAAGGATGGAAATGTTGATCT 58.459 43.478 0.00 0.00 0.00 2.75
1959 2097 4.958581 GGGAAGGATGGAAATGTTGATCTT 59.041 41.667 0.00 0.00 0.00 2.40
1960 2098 5.163478 GGGAAGGATGGAAATGTTGATCTTG 60.163 44.000 0.00 0.00 0.00 3.02
1961 2099 5.163478 GGAAGGATGGAAATGTTGATCTTGG 60.163 44.000 0.00 0.00 0.00 3.61
1962 2100 4.939255 AGGATGGAAATGTTGATCTTGGT 58.061 39.130 0.00 0.00 0.00 3.67
1966 2104 5.199024 TGGAAATGTTGATCTTGGTTGTG 57.801 39.130 0.00 0.00 0.00 3.33
2250 2408 4.112341 CTCGTGTCGTCCCCCGTC 62.112 72.222 0.00 0.00 37.94 4.79
2554 2727 0.866061 CGGCGGAGTCTACATGAACG 60.866 60.000 0.00 0.00 0.00 3.95
2765 2938 1.301401 TCTTTTCCACCAGCGACCG 60.301 57.895 0.00 0.00 0.00 4.79
2928 3102 7.498239 GGTGTAAATAGGAAGGTTAATCTCACC 59.502 40.741 2.72 2.72 34.06 4.02
2929 3103 7.498239 GTGTAAATAGGAAGGTTAATCTCACCC 59.502 40.741 7.90 2.11 34.44 4.61
2931 3105 6.502074 AATAGGAAGGTTAATCTCACCCTC 57.498 41.667 7.36 0.00 34.44 4.30
2936 3110 6.010850 GGAAGGTTAATCTCACCCTCTTTTT 58.989 40.000 0.00 0.00 34.44 1.94
2986 3179 4.457603 GCTTGTGAGAGTCTTAGTGAGAGA 59.542 45.833 0.00 0.00 34.31 3.10
2987 3180 5.391950 GCTTGTGAGAGTCTTAGTGAGAGAG 60.392 48.000 0.00 0.00 34.31 3.20
2988 3181 5.491323 TGTGAGAGTCTTAGTGAGAGAGA 57.509 43.478 0.00 0.00 34.31 3.10
2989 3182 5.487433 TGTGAGAGTCTTAGTGAGAGAGAG 58.513 45.833 0.00 0.00 34.31 3.20
2990 3183 5.247337 TGTGAGAGTCTTAGTGAGAGAGAGA 59.753 44.000 0.00 0.00 34.31 3.10
2991 3184 5.812642 GTGAGAGTCTTAGTGAGAGAGAGAG 59.187 48.000 0.00 0.00 34.31 3.20
3114 3307 4.202202 CCCTTGGCTTGTGTCAATTTACAA 60.202 41.667 0.00 0.00 37.15 2.41
3115 3308 5.511202 CCCTTGGCTTGTGTCAATTTACAAT 60.511 40.000 0.00 0.00 37.15 2.71
3157 3353 9.688091 TGTAGCTTGGTTTTGGTATATGATTTA 57.312 29.630 0.00 0.00 0.00 1.40
3181 3377 7.944729 ACTTTTCCACAGATTAATGCATACT 57.055 32.000 0.00 0.00 0.00 2.12
3283 3492 5.625150 AGTAGCAACTCCAATTTTCAGACT 58.375 37.500 0.00 0.00 0.00 3.24
3284 3493 6.769512 AGTAGCAACTCCAATTTTCAGACTA 58.230 36.000 0.00 0.00 0.00 2.59
3285 3494 7.224297 AGTAGCAACTCCAATTTTCAGACTAA 58.776 34.615 0.00 0.00 0.00 2.24
3292 3501 8.753497 ACTCCAATTTTCAGACTAATAATCCC 57.247 34.615 0.00 0.00 0.00 3.85
3304 3513 8.660373 CAGACTAATAATCCCGAGAAAATATGC 58.340 37.037 0.00 0.00 0.00 3.14
3315 3524 6.813152 CCCGAGAAAATATGCAACAGAAAAAT 59.187 34.615 0.00 0.00 0.00 1.82
3327 3536 8.795786 TGCAACAGAAAAATAAGTATGAACAC 57.204 30.769 0.00 0.00 0.00 3.32
3344 3553 5.630121 TGAACACCAGAGGTATCAACAATT 58.370 37.500 0.00 0.00 32.11 2.32
3350 3559 8.204836 ACACCAGAGGTATCAACAATTATACTC 58.795 37.037 0.00 0.00 32.11 2.59
3351 3560 8.424918 CACCAGAGGTATCAACAATTATACTCT 58.575 37.037 0.00 0.00 32.11 3.24
3352 3561 8.643324 ACCAGAGGTATCAACAATTATACTCTC 58.357 37.037 0.00 0.00 32.11 3.20
3353 3562 8.865090 CCAGAGGTATCAACAATTATACTCTCT 58.135 37.037 0.00 0.00 37.06 3.10
3355 3564 9.084533 AGAGGTATCAACAATTATACTCTCTCC 57.915 37.037 0.00 0.00 34.57 3.71
3356 3565 7.887381 AGGTATCAACAATTATACTCTCTCCG 58.113 38.462 0.00 0.00 0.00 4.63
3357 3566 7.506261 AGGTATCAACAATTATACTCTCTCCGT 59.494 37.037 0.00 0.00 0.00 4.69
3358 3567 7.808856 GGTATCAACAATTATACTCTCTCCGTC 59.191 40.741 0.00 0.00 0.00 4.79
3359 3568 6.145338 TCAACAATTATACTCTCTCCGTCC 57.855 41.667 0.00 0.00 0.00 4.79
3360 3569 4.832590 ACAATTATACTCTCTCCGTCCG 57.167 45.455 0.00 0.00 0.00 4.79
3361 3570 3.568853 ACAATTATACTCTCTCCGTCCGG 59.431 47.826 0.00 0.00 0.00 5.14
3362 3571 3.784511 ATTATACTCTCTCCGTCCGGA 57.215 47.619 0.00 0.00 42.90 5.14
3363 3572 3.565764 TTATACTCTCTCCGTCCGGAA 57.434 47.619 5.23 0.00 44.66 4.30
3365 3574 2.431954 TACTCTCTCCGTCCGGAAAT 57.568 50.000 5.23 0.00 44.66 2.17
3367 3576 2.022934 ACTCTCTCCGTCCGGAAATAC 58.977 52.381 5.23 0.00 44.66 1.89
3368 3577 2.299521 CTCTCTCCGTCCGGAAATACT 58.700 52.381 5.23 0.00 44.66 2.12
3369 3578 2.688958 CTCTCTCCGTCCGGAAATACTT 59.311 50.000 5.23 0.00 44.66 2.24
3370 3579 2.426024 TCTCTCCGTCCGGAAATACTTG 59.574 50.000 5.23 0.00 44.66 3.16
3371 3580 2.165845 CTCTCCGTCCGGAAATACTTGT 59.834 50.000 5.23 0.00 44.66 3.16
3372 3581 2.165030 TCTCCGTCCGGAAATACTTGTC 59.835 50.000 5.23 0.00 44.66 3.18
3374 3583 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
3375 3584 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
3376 3585 2.534349 CGTCCGGAAATACTTGTCATCG 59.466 50.000 5.23 0.00 0.00 3.84
3377 3586 3.732774 CGTCCGGAAATACTTGTCATCGA 60.733 47.826 5.23 0.00 0.00 3.59
3378 3587 4.178540 GTCCGGAAATACTTGTCATCGAA 58.821 43.478 5.23 0.00 0.00 3.71
3379 3588 4.628333 GTCCGGAAATACTTGTCATCGAAA 59.372 41.667 5.23 0.00 0.00 3.46
3380 3589 5.293569 GTCCGGAAATACTTGTCATCGAAAT 59.706 40.000 5.23 0.00 0.00 2.17
3384 3593 6.487103 GGAAATACTTGTCATCGAAATGGAC 58.513 40.000 0.00 0.00 33.42 4.02
3385 3594 6.093495 GGAAATACTTGTCATCGAAATGGACA 59.907 38.462 8.05 8.05 33.42 4.02
3386 3595 7.361713 GGAAATACTTGTCATCGAAATGGACAA 60.362 37.037 18.13 18.13 34.59 3.18
3387 3596 7.447374 AATACTTGTCATCGAAATGGACAAA 57.553 32.000 19.07 10.75 34.98 2.83
3388 3597 5.766150 ACTTGTCATCGAAATGGACAAAA 57.234 34.783 19.07 5.83 34.98 2.44
3389 3598 5.762045 ACTTGTCATCGAAATGGACAAAAG 58.238 37.500 19.07 13.81 34.98 2.27
3390 3599 5.530915 ACTTGTCATCGAAATGGACAAAAGA 59.469 36.000 19.07 5.07 34.98 2.52
3391 3600 6.207417 ACTTGTCATCGAAATGGACAAAAGAT 59.793 34.615 19.07 8.44 34.98 2.40
3392 3601 5.941733 TGTCATCGAAATGGACAAAAGATG 58.058 37.500 9.28 0.00 36.35 2.90
3394 3603 6.652900 TGTCATCGAAATGGACAAAAGATGTA 59.347 34.615 9.28 0.00 44.12 2.29
3395 3604 7.336679 TGTCATCGAAATGGACAAAAGATGTAT 59.663 33.333 9.28 0.00 44.12 2.29
3396 3605 7.852945 GTCATCGAAATGGACAAAAGATGTATC 59.147 37.037 0.00 0.00 44.12 2.24
3397 3606 7.770433 TCATCGAAATGGACAAAAGATGTATCT 59.230 33.333 0.00 0.00 44.12 1.98
3398 3607 9.045223 CATCGAAATGGACAAAAGATGTATCTA 57.955 33.333 0.00 0.00 44.12 1.98
3399 3608 8.648557 TCGAAATGGACAAAAGATGTATCTAG 57.351 34.615 0.00 0.00 44.12 2.43
3400 3609 8.474831 TCGAAATGGACAAAAGATGTATCTAGA 58.525 33.333 0.00 0.00 44.12 2.43
3401 3610 8.543774 CGAAATGGACAAAAGATGTATCTAGAC 58.456 37.037 0.00 0.00 44.12 2.59
3402 3611 8.425577 AAATGGACAAAAGATGTATCTAGACG 57.574 34.615 0.00 0.00 44.12 4.18
3403 3612 6.525578 TGGACAAAAGATGTATCTAGACGT 57.474 37.500 0.00 0.00 44.12 4.34
3404 3613 7.634671 TGGACAAAAGATGTATCTAGACGTA 57.365 36.000 0.00 0.00 44.12 3.57
3405 3614 8.234136 TGGACAAAAGATGTATCTAGACGTAT 57.766 34.615 0.00 0.00 44.12 3.06
3406 3615 8.692710 TGGACAAAAGATGTATCTAGACGTATT 58.307 33.333 0.00 0.00 44.12 1.89
3407 3616 9.530633 GGACAAAAGATGTATCTAGACGTATTT 57.469 33.333 0.00 0.00 44.12 1.40
3445 3654 9.657419 ACATTCCTTTTTATCCATTTTGATGAC 57.343 29.630 0.00 0.00 0.00 3.06
3446 3655 9.656040 CATTCCTTTTTATCCATTTTGATGACA 57.344 29.630 0.00 0.00 0.00 3.58
3457 3666 8.700722 TCCATTTTGATGACAAATATTTTCGG 57.299 30.769 0.00 0.00 43.99 4.30
3458 3667 8.526978 TCCATTTTGATGACAAATATTTTCGGA 58.473 29.630 0.00 0.00 43.99 4.55
3459 3668 8.594687 CCATTTTGATGACAAATATTTTCGGAC 58.405 33.333 0.00 0.00 43.99 4.79
3460 3669 7.789341 TTTTGATGACAAATATTTTCGGACG 57.211 32.000 0.00 0.00 43.99 4.79
3461 3670 4.904116 TGATGACAAATATTTTCGGACGC 58.096 39.130 0.00 0.00 0.00 5.19
3462 3671 4.393371 TGATGACAAATATTTTCGGACGCA 59.607 37.500 0.00 0.00 0.00 5.24
3463 3672 4.335082 TGACAAATATTTTCGGACGCAG 57.665 40.909 0.00 0.00 0.00 5.18
3464 3673 3.126171 TGACAAATATTTTCGGACGCAGG 59.874 43.478 0.00 0.00 0.00 4.85
3484 3693 2.357154 GGAAAAGCAGGGCCATCTCTAA 60.357 50.000 6.18 0.00 0.00 2.10
3529 3741 1.825090 TGCCCAGCACTATTTGACAG 58.175 50.000 0.00 0.00 31.71 3.51
3560 3772 6.849085 ACACAGGTGCCATAATTAATTTCA 57.151 33.333 5.91 0.00 0.00 2.69
3562 3774 7.322664 ACACAGGTGCCATAATTAATTTCAAG 58.677 34.615 5.91 0.00 0.00 3.02
3601 3813 5.611374 ACTATTTCGAGAGAGAGAGAGAGG 58.389 45.833 4.40 0.00 43.69 3.69
3609 3821 0.478507 GAGAGAGAGAGGGAGGGAGG 59.521 65.000 0.00 0.00 0.00 4.30
3655 4257 4.224818 AGAGAGGGGAAGAGACAAAATCTG 59.775 45.833 0.00 0.00 38.00 2.90
3657 4259 2.646798 AGGGGAAGAGACAAAATCTGCT 59.353 45.455 0.00 0.00 38.00 4.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.012658 TGCTGGATGAATTAGTTGTTGTTC 57.987 37.500 0.00 0.00 0.00 3.18
1 2 5.769662 TCTGCTGGATGAATTAGTTGTTGTT 59.230 36.000 0.00 0.00 0.00 2.83
2 3 5.182001 GTCTGCTGGATGAATTAGTTGTTGT 59.818 40.000 0.00 0.00 0.00 3.32
3 4 5.181811 TGTCTGCTGGATGAATTAGTTGTTG 59.818 40.000 0.00 0.00 0.00 3.33
4 5 5.316167 TGTCTGCTGGATGAATTAGTTGTT 58.684 37.500 0.00 0.00 0.00 2.83
5 6 4.910195 TGTCTGCTGGATGAATTAGTTGT 58.090 39.130 0.00 0.00 0.00 3.32
6 7 5.885230 TTGTCTGCTGGATGAATTAGTTG 57.115 39.130 0.00 0.00 0.00 3.16
35 36 3.562973 GGACAGTGCATCATTAGGTCATG 59.437 47.826 0.00 0.00 0.00 3.07
60 61 5.106442 GGCAAATTTGACCGGGTTAATTAG 58.894 41.667 22.31 7.61 0.00 1.73
85 86 7.992608 AGCCATACTTTTCAAAAATTTCTTGGT 59.007 29.630 10.94 6.00 0.00 3.67
87 88 9.868389 GAAGCCATACTTTTCAAAAATTTCTTG 57.132 29.630 0.00 0.00 39.29 3.02
91 92 6.989759 ACCGAAGCCATACTTTTCAAAAATTT 59.010 30.769 0.00 0.00 39.29 1.82
94 95 5.300792 AGACCGAAGCCATACTTTTCAAAAA 59.699 36.000 0.00 0.00 39.29 1.94
109 110 0.036306 TCCCTCCAAAAGACCGAAGC 59.964 55.000 0.00 0.00 0.00 3.86
110 111 2.038557 TCTTCCCTCCAAAAGACCGAAG 59.961 50.000 0.00 0.00 0.00 3.79
117 118 2.617532 CCTGCTCTCTTCCCTCCAAAAG 60.618 54.545 0.00 0.00 0.00 2.27
135 136 2.791170 GAAGATGGGCAGCTTCCTG 58.209 57.895 1.39 0.00 45.29 3.86
159 160 0.318120 GGTGGAACAAATGGGCTGTG 59.682 55.000 0.00 0.00 44.16 3.66
160 161 0.831711 GGGTGGAACAAATGGGCTGT 60.832 55.000 0.00 0.00 44.16 4.40
162 163 0.190815 AAGGGTGGAACAAATGGGCT 59.809 50.000 0.00 0.00 44.16 5.19
166 167 4.020307 AGGCAATTAAGGGTGGAACAAATG 60.020 41.667 0.00 0.00 44.16 2.32
187 188 5.253330 TGGAGGTGCTGTTCTTAATTAAGG 58.747 41.667 22.11 9.47 34.14 2.69
189 190 6.542370 GCTATGGAGGTGCTGTTCTTAATTAA 59.458 38.462 0.00 0.00 0.00 1.40
200 201 1.741706 CACAAAGCTATGGAGGTGCTG 59.258 52.381 0.00 0.00 37.11 4.41
218 219 5.207768 CACACATCTTCAGTTTTACAGCAC 58.792 41.667 0.00 0.00 0.00 4.40
219 220 4.261155 GCACACATCTTCAGTTTTACAGCA 60.261 41.667 0.00 0.00 0.00 4.41
220 221 4.222114 GCACACATCTTCAGTTTTACAGC 58.778 43.478 0.00 0.00 0.00 4.40
221 222 5.207768 GTGCACACATCTTCAGTTTTACAG 58.792 41.667 13.17 0.00 0.00 2.74
222 223 4.637977 TGTGCACACATCTTCAGTTTTACA 59.362 37.500 17.42 0.00 36.21 2.41
223 224 5.168526 TGTGCACACATCTTCAGTTTTAC 57.831 39.130 17.42 0.00 36.21 2.01
224 225 4.881273 ACTGTGCACACATCTTCAGTTTTA 59.119 37.500 17.42 0.00 41.01 1.52
229 230 3.976793 AAACTGTGCACACATCTTCAG 57.023 42.857 17.42 6.15 41.01 3.02
230 231 3.734597 GCAAAACTGTGCACACATCTTCA 60.735 43.478 17.42 0.00 44.29 3.02
231 232 2.791004 GCAAAACTGTGCACACATCTTC 59.209 45.455 17.42 0.39 44.29 2.87
232 233 2.813061 GCAAAACTGTGCACACATCTT 58.187 42.857 17.42 4.17 44.29 2.40
233 234 2.497107 GCAAAACTGTGCACACATCT 57.503 45.000 17.42 0.00 44.29 2.90
241 242 3.923017 AGAGGTAATGCAAAACTGTGC 57.077 42.857 0.00 0.00 45.15 4.57
242 243 5.647658 TGGATAGAGGTAATGCAAAACTGTG 59.352 40.000 0.00 0.00 0.00 3.66
243 244 5.815581 TGGATAGAGGTAATGCAAAACTGT 58.184 37.500 0.00 0.00 0.00 3.55
244 245 6.757897 TTGGATAGAGGTAATGCAAAACTG 57.242 37.500 0.00 0.00 32.57 3.16
245 246 7.775053 TTTTGGATAGAGGTAATGCAAAACT 57.225 32.000 10.24 0.00 44.50 2.66
248 249 9.651913 GAAAATTTTGGATAGAGGTAATGCAAA 57.348 29.630 8.47 0.00 41.18 3.68
249 250 8.811017 TGAAAATTTTGGATAGAGGTAATGCAA 58.189 29.630 8.47 0.00 33.51 4.08
250 251 8.359875 TGAAAATTTTGGATAGAGGTAATGCA 57.640 30.769 8.47 0.00 0.00 3.96
251 252 9.822185 AATGAAAATTTTGGATAGAGGTAATGC 57.178 29.630 8.47 0.00 0.00 3.56
278 279 3.886505 AGTGGTATTGTCTTGCGGAAAAA 59.113 39.130 0.00 0.00 0.00 1.94
279 280 3.482436 AGTGGTATTGTCTTGCGGAAAA 58.518 40.909 0.00 0.00 0.00 2.29
280 281 3.134574 AGTGGTATTGTCTTGCGGAAA 57.865 42.857 0.00 0.00 0.00 3.13
281 282 2.851263 AGTGGTATTGTCTTGCGGAA 57.149 45.000 0.00 0.00 0.00 4.30
282 283 2.301870 AGAAGTGGTATTGTCTTGCGGA 59.698 45.455 0.00 0.00 0.00 5.54
283 284 2.699954 AGAAGTGGTATTGTCTTGCGG 58.300 47.619 0.00 0.00 0.00 5.69
284 285 4.091509 GTGTAGAAGTGGTATTGTCTTGCG 59.908 45.833 0.00 0.00 0.00 4.85
285 286 4.994852 TGTGTAGAAGTGGTATTGTCTTGC 59.005 41.667 0.00 0.00 0.00 4.01
286 287 7.387673 TGATTGTGTAGAAGTGGTATTGTCTTG 59.612 37.037 0.00 0.00 0.00 3.02
287 288 7.450074 TGATTGTGTAGAAGTGGTATTGTCTT 58.550 34.615 0.00 0.00 0.00 3.01
288 289 7.004555 TGATTGTGTAGAAGTGGTATTGTCT 57.995 36.000 0.00 0.00 0.00 3.41
289 290 7.667043 TTGATTGTGTAGAAGTGGTATTGTC 57.333 36.000 0.00 0.00 0.00 3.18
290 291 8.635765 ATTTGATTGTGTAGAAGTGGTATTGT 57.364 30.769 0.00 0.00 0.00 2.71
291 292 9.559958 GAATTTGATTGTGTAGAAGTGGTATTG 57.440 33.333 0.00 0.00 0.00 1.90
292 293 9.295825 TGAATTTGATTGTGTAGAAGTGGTATT 57.704 29.630 0.00 0.00 0.00 1.89
293 294 8.862325 TGAATTTGATTGTGTAGAAGTGGTAT 57.138 30.769 0.00 0.00 0.00 2.73
294 295 7.390440 CCTGAATTTGATTGTGTAGAAGTGGTA 59.610 37.037 0.00 0.00 0.00 3.25
295 296 6.207417 CCTGAATTTGATTGTGTAGAAGTGGT 59.793 38.462 0.00 0.00 0.00 4.16
296 297 6.207417 ACCTGAATTTGATTGTGTAGAAGTGG 59.793 38.462 0.00 0.00 0.00 4.00
297 298 7.080099 CACCTGAATTTGATTGTGTAGAAGTG 58.920 38.462 0.00 0.00 0.00 3.16
298 299 6.772716 ACACCTGAATTTGATTGTGTAGAAGT 59.227 34.615 0.00 0.00 35.36 3.01
299 300 7.206981 ACACCTGAATTTGATTGTGTAGAAG 57.793 36.000 0.00 0.00 35.36 2.85
303 304 5.414454 GGCTACACCTGAATTTGATTGTGTA 59.586 40.000 0.00 0.00 37.95 2.90
304 305 4.218417 GGCTACACCTGAATTTGATTGTGT 59.782 41.667 0.00 0.00 39.91 3.72
305 306 4.737054 GGCTACACCTGAATTTGATTGTG 58.263 43.478 0.00 0.00 34.51 3.33
319 320 1.818674 CAAACCAATGGAGGCTACACC 59.181 52.381 6.16 0.00 39.61 4.16
320 321 2.514803 ACAAACCAATGGAGGCTACAC 58.485 47.619 6.16 0.00 0.00 2.90
321 322 2.969821 ACAAACCAATGGAGGCTACA 57.030 45.000 6.16 0.00 0.00 2.74
322 323 3.681593 TGTACAAACCAATGGAGGCTAC 58.318 45.455 6.16 0.00 0.00 3.58
323 324 4.263727 ACATGTACAAACCAATGGAGGCTA 60.264 41.667 6.16 0.00 0.00 3.93
324 325 2.969821 TGTACAAACCAATGGAGGCT 57.030 45.000 6.16 0.00 0.00 4.58
325 326 2.825532 ACATGTACAAACCAATGGAGGC 59.174 45.455 6.16 0.00 0.00 4.70
326 327 5.467035 AAACATGTACAAACCAATGGAGG 57.533 39.130 6.16 0.00 0.00 4.30
327 328 7.122650 AGGATAAACATGTACAAACCAATGGAG 59.877 37.037 6.16 0.00 0.00 3.86
328 329 6.951198 AGGATAAACATGTACAAACCAATGGA 59.049 34.615 6.16 0.00 0.00 3.41
329 330 7.169158 AGGATAAACATGTACAAACCAATGG 57.831 36.000 0.00 0.00 0.00 3.16
347 348 9.974980 GGTTTGAAAGACACAAAAATAGGATAA 57.025 29.630 0.00 0.00 38.63 1.75
348 349 8.581578 GGGTTTGAAAGACACAAAAATAGGATA 58.418 33.333 0.00 0.00 38.63 2.59
349 350 7.441836 GGGTTTGAAAGACACAAAAATAGGAT 58.558 34.615 0.00 0.00 38.63 3.24
350 351 6.183360 GGGGTTTGAAAGACACAAAAATAGGA 60.183 38.462 0.00 0.00 38.63 2.94
351 352 5.989168 GGGGTTTGAAAGACACAAAAATAGG 59.011 40.000 0.00 0.00 38.63 2.57
352 353 6.578023 TGGGGTTTGAAAGACACAAAAATAG 58.422 36.000 0.00 0.00 38.63 1.73
353 354 6.546428 TGGGGTTTGAAAGACACAAAAATA 57.454 33.333 0.00 0.00 38.63 1.40
354 355 5.428184 TGGGGTTTGAAAGACACAAAAAT 57.572 34.783 0.00 0.00 38.63 1.82
355 356 4.891992 TGGGGTTTGAAAGACACAAAAA 57.108 36.364 0.00 0.00 38.63 1.94
356 357 4.467795 TCATGGGGTTTGAAAGACACAAAA 59.532 37.500 0.00 0.00 38.63 2.44
357 358 4.026744 TCATGGGGTTTGAAAGACACAAA 58.973 39.130 0.00 0.00 35.34 2.83
358 359 3.636679 TCATGGGGTTTGAAAGACACAA 58.363 40.909 0.00 0.00 0.00 3.33
359 360 3.304911 TCATGGGGTTTGAAAGACACA 57.695 42.857 0.00 0.00 0.00 3.72
360 361 3.193479 GGATCATGGGGTTTGAAAGACAC 59.807 47.826 0.00 0.00 0.00 3.67
361 362 3.181424 TGGATCATGGGGTTTGAAAGACA 60.181 43.478 0.00 0.00 0.00 3.41
362 363 3.430453 TGGATCATGGGGTTTGAAAGAC 58.570 45.455 0.00 0.00 0.00 3.01
363 364 3.824001 TGGATCATGGGGTTTGAAAGA 57.176 42.857 0.00 0.00 0.00 2.52
364 365 4.888326 TTTGGATCATGGGGTTTGAAAG 57.112 40.909 0.00 0.00 0.00 2.62
365 366 4.041444 CCTTTTGGATCATGGGGTTTGAAA 59.959 41.667 0.00 0.00 44.07 2.69
366 367 3.582208 CCTTTTGGATCATGGGGTTTGAA 59.418 43.478 0.00 0.00 44.07 2.69
367 368 3.172339 CCTTTTGGATCATGGGGTTTGA 58.828 45.455 0.00 0.00 44.07 2.69
368 369 2.355007 GCCTTTTGGATCATGGGGTTTG 60.355 50.000 0.00 0.00 44.07 2.93
369 370 1.908619 GCCTTTTGGATCATGGGGTTT 59.091 47.619 0.00 0.00 44.07 3.27
370 371 1.079323 AGCCTTTTGGATCATGGGGTT 59.921 47.619 0.00 0.00 44.07 4.11
371 372 0.712380 AGCCTTTTGGATCATGGGGT 59.288 50.000 0.00 0.00 44.07 4.95
372 373 1.870064 AAGCCTTTTGGATCATGGGG 58.130 50.000 0.00 0.00 44.07 4.96
373 374 3.369787 GGAAAAGCCTTTTGGATCATGGG 60.370 47.826 7.25 0.00 44.07 4.00
374 375 3.261390 TGGAAAAGCCTTTTGGATCATGG 59.739 43.478 7.25 0.00 44.07 3.66
375 376 4.540359 TGGAAAAGCCTTTTGGATCATG 57.460 40.909 7.25 0.00 44.07 3.07
376 377 5.767277 AATGGAAAAGCCTTTTGGATCAT 57.233 34.783 7.25 3.52 44.07 2.45
377 378 5.565455 AAATGGAAAAGCCTTTTGGATCA 57.435 34.783 7.25 1.33 41.13 2.92
378 379 7.977789 TTTAAATGGAAAAGCCTTTTGGATC 57.022 32.000 7.25 0.00 42.23 3.36
419 420 7.440523 ACACCTGAATTTATGTGTTCTCTTC 57.559 36.000 5.61 0.00 38.74 2.87
422 423 6.183360 GGCTACACCTGAATTTATGTGTTCTC 60.183 42.308 14.71 6.41 41.76 2.87
455 456 7.120138 GGACGGAGGAAGTATATTTGTTTTTGA 59.880 37.037 0.00 0.00 0.00 2.69
458 459 5.583457 CGGACGGAGGAAGTATATTTGTTTT 59.417 40.000 0.00 0.00 0.00 2.43
463 464 3.569491 TCCGGACGGAGGAAGTATATTT 58.431 45.455 9.76 0.00 39.76 1.40
467 468 3.602104 TTCCGGACGGAGGAAGTAT 57.398 52.632 13.64 0.00 46.06 2.12
473 474 3.611057 CGATAAGTATTTCCGGACGGAGG 60.611 52.174 13.64 0.00 46.06 4.30
474 475 3.562505 CGATAAGTATTTCCGGACGGAG 58.437 50.000 13.64 0.00 46.06 4.63
475 476 2.294233 CCGATAAGTATTTCCGGACGGA 59.706 50.000 16.82 9.76 42.02 4.69
477 478 3.562505 CTCCGATAAGTATTTCCGGACG 58.437 50.000 1.83 0.00 42.79 4.79
478 479 3.571401 TCCTCCGATAAGTATTTCCGGAC 59.429 47.826 1.83 0.00 42.79 4.79
480 481 4.595762 TTCCTCCGATAAGTATTTCCGG 57.404 45.455 0.00 0.00 41.22 5.14
482 483 7.661847 ACATTCATTCCTCCGATAAGTATTTCC 59.338 37.037 0.00 0.00 0.00 3.13
483 484 8.608844 ACATTCATTCCTCCGATAAGTATTTC 57.391 34.615 0.00 0.00 0.00 2.17
485 486 9.877178 GATACATTCATTCCTCCGATAAGTATT 57.123 33.333 0.00 0.00 0.00 1.89
486 487 9.261035 AGATACATTCATTCCTCCGATAAGTAT 57.739 33.333 0.00 0.00 0.00 2.12
488 489 7.546250 AGATACATTCATTCCTCCGATAAGT 57.454 36.000 0.00 0.00 0.00 2.24
489 490 8.961634 TCTAGATACATTCATTCCTCCGATAAG 58.038 37.037 0.00 0.00 0.00 1.73
491 492 8.907885 CATCTAGATACATTCATTCCTCCGATA 58.092 37.037 4.54 0.00 0.00 2.92
493 494 6.721668 ACATCTAGATACATTCATTCCTCCGA 59.278 38.462 4.54 0.00 0.00 4.55
494 495 6.929625 ACATCTAGATACATTCATTCCTCCG 58.070 40.000 4.54 0.00 0.00 4.63
535 536 9.586150 CGTCGGAGAAATAGATAAAAATGAATG 57.414 33.333 0.00 0.00 39.69 2.67
536 537 9.542462 TCGTCGGAGAAATAGATAAAAATGAAT 57.458 29.630 0.00 0.00 39.69 2.57
537 538 8.936070 TCGTCGGAGAAATAGATAAAAATGAA 57.064 30.769 0.00 0.00 39.69 2.57
538 539 8.195436 ACTCGTCGGAGAAATAGATAAAAATGA 58.805 33.333 0.00 0.00 43.27 2.57
539 540 8.354011 ACTCGTCGGAGAAATAGATAAAAATG 57.646 34.615 0.00 0.00 43.27 2.32
543 544 9.674824 GAATTACTCGTCGGAGAAATAGATAAA 57.325 33.333 0.00 0.00 43.27 1.40
544 545 9.064706 AGAATTACTCGTCGGAGAAATAGATAA 57.935 33.333 0.00 0.00 43.27 1.75
545 546 8.504815 CAGAATTACTCGTCGGAGAAATAGATA 58.495 37.037 0.00 0.00 43.27 1.98
546 547 7.364200 CAGAATTACTCGTCGGAGAAATAGAT 58.636 38.462 0.00 0.00 43.27 1.98
547 548 6.238676 CCAGAATTACTCGTCGGAGAAATAGA 60.239 42.308 0.00 0.00 43.27 1.98
548 549 5.915758 CCAGAATTACTCGTCGGAGAAATAG 59.084 44.000 0.00 0.00 43.27 1.73
549 550 5.591472 TCCAGAATTACTCGTCGGAGAAATA 59.409 40.000 0.00 0.00 43.27 1.40
550 551 4.401519 TCCAGAATTACTCGTCGGAGAAAT 59.598 41.667 0.00 0.00 43.27 2.17
551 552 3.760151 TCCAGAATTACTCGTCGGAGAAA 59.240 43.478 0.00 0.00 43.27 2.52
552 553 3.128242 GTCCAGAATTACTCGTCGGAGAA 59.872 47.826 0.00 0.00 43.27 2.87
553 554 2.681848 GTCCAGAATTACTCGTCGGAGA 59.318 50.000 0.00 0.00 43.27 3.71
554 555 2.539142 CGTCCAGAATTACTCGTCGGAG 60.539 54.545 0.00 0.00 46.13 4.63
555 556 1.399440 CGTCCAGAATTACTCGTCGGA 59.601 52.381 0.00 0.00 0.00 4.55
556 557 1.533338 CCGTCCAGAATTACTCGTCGG 60.533 57.143 0.00 0.00 0.00 4.79
557 558 1.399440 TCCGTCCAGAATTACTCGTCG 59.601 52.381 0.00 0.00 0.00 5.12
558 559 2.223525 CCTCCGTCCAGAATTACTCGTC 60.224 54.545 0.00 0.00 0.00 4.20
559 560 1.749634 CCTCCGTCCAGAATTACTCGT 59.250 52.381 0.00 0.00 0.00 4.18
560 561 1.067212 CCCTCCGTCCAGAATTACTCG 59.933 57.143 0.00 0.00 0.00 4.18
561 562 2.362717 CTCCCTCCGTCCAGAATTACTC 59.637 54.545 0.00 0.00 0.00 2.59
562 563 2.292323 ACTCCCTCCGTCCAGAATTACT 60.292 50.000 0.00 0.00 0.00 2.24
563 564 2.108970 ACTCCCTCCGTCCAGAATTAC 58.891 52.381 0.00 0.00 0.00 1.89
564 565 2.544844 ACTCCCTCCGTCCAGAATTA 57.455 50.000 0.00 0.00 0.00 1.40
565 566 2.108970 GTACTCCCTCCGTCCAGAATT 58.891 52.381 0.00 0.00 0.00 2.17
566 567 1.006758 TGTACTCCCTCCGTCCAGAAT 59.993 52.381 0.00 0.00 0.00 2.40
567 568 0.406750 TGTACTCCCTCCGTCCAGAA 59.593 55.000 0.00 0.00 0.00 3.02
568 569 0.406750 TTGTACTCCCTCCGTCCAGA 59.593 55.000 0.00 0.00 0.00 3.86
569 570 1.486211 ATTGTACTCCCTCCGTCCAG 58.514 55.000 0.00 0.00 0.00 3.86
570 571 1.946984 AATTGTACTCCCTCCGTCCA 58.053 50.000 0.00 0.00 0.00 4.02
571 572 2.235402 TGAAATTGTACTCCCTCCGTCC 59.765 50.000 0.00 0.00 0.00 4.79
572 573 3.522553 CTGAAATTGTACTCCCTCCGTC 58.477 50.000 0.00 0.00 0.00 4.79
573 574 2.236395 CCTGAAATTGTACTCCCTCCGT 59.764 50.000 0.00 0.00 0.00 4.69
574 575 2.906354 CCTGAAATTGTACTCCCTCCG 58.094 52.381 0.00 0.00 0.00 4.63
575 576 2.026262 TGCCTGAAATTGTACTCCCTCC 60.026 50.000 0.00 0.00 0.00 4.30
576 577 3.010420 GTGCCTGAAATTGTACTCCCTC 58.990 50.000 0.00 0.00 0.00 4.30
577 578 2.644798 AGTGCCTGAAATTGTACTCCCT 59.355 45.455 0.00 0.00 0.00 4.20
578 579 3.073274 AGTGCCTGAAATTGTACTCCC 57.927 47.619 0.00 0.00 0.00 4.30
579 580 5.453567 AAAAGTGCCTGAAATTGTACTCC 57.546 39.130 0.00 0.00 0.00 3.85
606 607 5.463724 CCACTTTTCTGTCTCTTGTGTAGAC 59.536 44.000 0.00 0.00 43.04 2.59
607 608 5.128827 ACCACTTTTCTGTCTCTTGTGTAGA 59.871 40.000 0.00 0.00 0.00 2.59
610 611 4.222124 ACCACTTTTCTGTCTCTTGTGT 57.778 40.909 0.00 0.00 0.00 3.72
641 659 3.505386 ACTTTGAGAGAGAGAGAGGCAA 58.495 45.455 0.00 0.00 0.00 4.52
642 660 3.168035 ACTTTGAGAGAGAGAGAGGCA 57.832 47.619 0.00 0.00 0.00 4.75
643 661 4.535526 AAACTTTGAGAGAGAGAGAGGC 57.464 45.455 0.00 0.00 0.00 4.70
673 694 2.705658 TCCTTGCAACAAGGAGAGAGAA 59.294 45.455 22.10 1.81 41.27 2.87
688 711 3.915575 CCATCTGTGGCTCCTTGC 58.084 61.111 0.00 0.00 39.01 4.01
766 790 2.024464 TGATGTATGGAAAGGTTGGGGG 60.024 50.000 0.00 0.00 0.00 5.40
856 893 4.179599 GGGGAGGGAGGAGGGAGG 62.180 77.778 0.00 0.00 0.00 4.30
867 904 4.038804 TTGGGGGAGGAGGGGAGG 62.039 72.222 0.00 0.00 0.00 4.30
868 905 2.692741 GTTGGGGGAGGAGGGGAG 60.693 72.222 0.00 0.00 0.00 4.30
869 906 3.547737 TGTTGGGGGAGGAGGGGA 61.548 66.667 0.00 0.00 0.00 4.81
870 907 3.339093 GTGTTGGGGGAGGAGGGG 61.339 72.222 0.00 0.00 0.00 4.79
871 908 3.339093 GGTGTTGGGGGAGGAGGG 61.339 72.222 0.00 0.00 0.00 4.30
872 909 2.531685 TGGTGTTGGGGGAGGAGG 60.532 66.667 0.00 0.00 0.00 4.30
873 910 3.081554 CTGGTGTTGGGGGAGGAG 58.918 66.667 0.00 0.00 0.00 3.69
874 911 3.256960 GCTGGTGTTGGGGGAGGA 61.257 66.667 0.00 0.00 0.00 3.71
884 933 3.325753 GAGGAGGGCTGCTGGTGT 61.326 66.667 0.00 0.00 0.00 4.16
950 1012 2.335369 GTCAGACCGTCACGCACT 59.665 61.111 0.40 0.00 0.00 4.40
960 1022 0.107116 TCCTAGCTCTCCGTCAGACC 60.107 60.000 0.00 0.00 0.00 3.85
983 1045 1.153823 ATCGCTTCGTCGGTCCTTG 60.154 57.895 0.00 0.00 0.00 3.61
989 1051 2.173669 ATTGCCATCGCTTCGTCGG 61.174 57.895 0.00 0.00 35.36 4.79
1107 1169 0.895559 GAGAAGGTTGTGGGGGCAAG 60.896 60.000 0.00 0.00 0.00 4.01
1140 1202 3.368531 GCGGAACAAAGATACAGGAGAGT 60.369 47.826 0.00 0.00 0.00 3.24
1143 1205 2.093447 AGGCGGAACAAAGATACAGGAG 60.093 50.000 0.00 0.00 0.00 3.69
1152 1214 1.574702 GGGACGAAGGCGGAACAAAG 61.575 60.000 0.00 0.00 43.17 2.77
1347 1434 2.843912 AAAATGCAGAGAGGGCGGGG 62.844 60.000 0.00 0.00 0.00 5.73
1351 1438 1.407979 CATGGAAAATGCAGAGAGGGC 59.592 52.381 0.00 0.00 0.00 5.19
1384 1481 7.709613 AGCAAGTTAAGTACTACATAATTCCGG 59.290 37.037 0.00 0.00 35.54 5.14
1385 1482 8.644318 AGCAAGTTAAGTACTACATAATTCCG 57.356 34.615 0.00 0.00 35.54 4.30
1387 1484 9.512435 TCGAGCAAGTTAAGTACTACATAATTC 57.488 33.333 0.00 0.00 35.54 2.17
1390 1487 8.048534 ACTCGAGCAAGTTAAGTACTACATAA 57.951 34.615 13.61 0.00 35.54 1.90
1392 1489 6.512342 ACTCGAGCAAGTTAAGTACTACAT 57.488 37.500 13.61 0.00 35.54 2.29
1393 1490 5.954296 ACTCGAGCAAGTTAAGTACTACA 57.046 39.130 13.61 0.00 35.54 2.74
1394 1491 7.301068 TCTACTCGAGCAAGTTAAGTACTAC 57.699 40.000 13.61 0.00 35.54 2.73
1397 1505 6.742264 GTCTTCTACTCGAGCAAGTTAAGTAC 59.258 42.308 13.61 7.61 0.00 2.73
1415 1523 7.095144 CGAGAAAGTCAGTCAGTAAGTCTTCTA 60.095 40.741 0.00 0.00 0.00 2.10
1654 1770 4.377708 GCCCGGCTTTGGCTTTGG 62.378 66.667 0.71 0.00 45.70 3.28
1721 1837 2.396590 TTTCGATTCCCTTCTTCCCG 57.603 50.000 0.00 0.00 0.00 5.14
1832 1969 8.159447 TCAAAATCAATGATTCGATCCTAGGAT 58.841 33.333 24.78 24.78 32.45 3.24
1853 1990 3.396685 AATCGGATGGGGGAATCAAAA 57.603 42.857 0.00 0.00 0.00 2.44
1854 1991 3.396685 AAATCGGATGGGGGAATCAAA 57.603 42.857 0.00 0.00 0.00 2.69
1855 1992 3.396685 AAAATCGGATGGGGGAATCAA 57.603 42.857 0.00 0.00 0.00 2.57
1856 1993 3.396685 AAAAATCGGATGGGGGAATCA 57.603 42.857 0.00 0.00 0.00 2.57
1911 2048 1.604604 ATCAACCTCAAACACCACCG 58.395 50.000 0.00 0.00 0.00 4.94
1912 2049 4.119136 CAAAATCAACCTCAAACACCACC 58.881 43.478 0.00 0.00 0.00 4.61
1934 2071 2.110578 CAACATTTCCATCCTTCCCCC 58.889 52.381 0.00 0.00 0.00 5.40
1939 2077 5.336102 ACCAAGATCAACATTTCCATCCTT 58.664 37.500 0.00 0.00 0.00 3.36
1944 2082 4.039004 CCACAACCAAGATCAACATTTCCA 59.961 41.667 0.00 0.00 0.00 3.53
1945 2083 4.280677 TCCACAACCAAGATCAACATTTCC 59.719 41.667 0.00 0.00 0.00 3.13
1950 2088 5.453057 CCAAATTCCACAACCAAGATCAACA 60.453 40.000 0.00 0.00 0.00 3.33
1951 2089 4.990426 CCAAATTCCACAACCAAGATCAAC 59.010 41.667 0.00 0.00 0.00 3.18
1952 2090 4.653341 ACCAAATTCCACAACCAAGATCAA 59.347 37.500 0.00 0.00 0.00 2.57
1953 2091 4.222336 ACCAAATTCCACAACCAAGATCA 58.778 39.130 0.00 0.00 0.00 2.92
1954 2092 4.871933 ACCAAATTCCACAACCAAGATC 57.128 40.909 0.00 0.00 0.00 2.75
1955 2093 4.743348 GCAACCAAATTCCACAACCAAGAT 60.743 41.667 0.00 0.00 0.00 2.40
1956 2094 3.431486 GCAACCAAATTCCACAACCAAGA 60.431 43.478 0.00 0.00 0.00 3.02
1957 2095 2.871633 GCAACCAAATTCCACAACCAAG 59.128 45.455 0.00 0.00 0.00 3.61
1958 2096 2.237143 TGCAACCAAATTCCACAACCAA 59.763 40.909 0.00 0.00 0.00 3.67
1959 2097 1.833630 TGCAACCAAATTCCACAACCA 59.166 42.857 0.00 0.00 0.00 3.67
1960 2098 2.102252 TCTGCAACCAAATTCCACAACC 59.898 45.455 0.00 0.00 0.00 3.77
1961 2099 3.383761 CTCTGCAACCAAATTCCACAAC 58.616 45.455 0.00 0.00 0.00 3.32
1962 2100 2.224018 GCTCTGCAACCAAATTCCACAA 60.224 45.455 0.00 0.00 0.00 3.33
1966 2104 0.598065 ACGCTCTGCAACCAAATTCC 59.402 50.000 0.00 0.00 0.00 3.01
2250 2408 2.577593 GGGTCGAAGAAGGGGTCG 59.422 66.667 0.00 0.00 39.69 4.79
2749 2922 2.975799 GCGGTCGCTGGTGGAAAA 60.976 61.111 8.20 0.00 38.26 2.29
2936 3110 6.017440 CCAGACGAAAATTTGACAAGAGGTAA 60.017 38.462 0.00 0.00 0.00 2.85
2940 3114 5.207768 CACCAGACGAAAATTTGACAAGAG 58.792 41.667 0.00 0.00 0.00 2.85
2945 3119 3.626028 AGCACCAGACGAAAATTTGAC 57.374 42.857 0.00 0.00 0.00 3.18
2986 3179 7.563020 TGCAAAGATATGAACAATCTCTCTCT 58.437 34.615 0.00 0.00 32.48 3.10
2987 3180 7.783090 TGCAAAGATATGAACAATCTCTCTC 57.217 36.000 0.00 0.00 32.48 3.20
2988 3181 7.255173 GCATGCAAAGATATGAACAATCTCTCT 60.255 37.037 14.21 0.00 32.48 3.10
2989 3182 6.856938 GCATGCAAAGATATGAACAATCTCTC 59.143 38.462 14.21 0.00 32.48 3.20
2990 3183 6.320418 TGCATGCAAAGATATGAACAATCTCT 59.680 34.615 20.30 0.00 32.48 3.10
2991 3184 6.500910 TGCATGCAAAGATATGAACAATCTC 58.499 36.000 20.30 0.00 32.48 2.75
3114 3307 9.574516 CCAAGCTACAAATAGGTAGGATAAAAT 57.425 33.333 0.00 0.00 40.84 1.82
3115 3308 8.554011 ACCAAGCTACAAATAGGTAGGATAAAA 58.446 33.333 0.00 0.00 40.84 1.52
3157 3353 7.944729 AGTATGCATTAATCTGTGGAAAAGT 57.055 32.000 3.54 0.00 0.00 2.66
3223 3427 9.661563 CACTGGACAGGTTATAAACTATTAACA 57.338 33.333 1.85 0.00 0.00 2.41
3224 3428 9.662947 ACACTGGACAGGTTATAAACTATTAAC 57.337 33.333 1.85 0.00 0.00 2.01
3227 3431 7.610305 CCAACACTGGACAGGTTATAAACTATT 59.390 37.037 1.85 0.00 46.92 1.73
3229 3433 6.469410 CCAACACTGGACAGGTTATAAACTA 58.531 40.000 1.85 0.00 46.92 2.24
3231 3435 5.622770 CCAACACTGGACAGGTTATAAAC 57.377 43.478 4.14 0.00 46.92 2.01
3283 3492 8.684386 TGTTGCATATTTTCTCGGGATTATTA 57.316 30.769 0.00 0.00 0.00 0.98
3284 3493 7.502226 TCTGTTGCATATTTTCTCGGGATTATT 59.498 33.333 0.00 0.00 0.00 1.40
3285 3494 6.998074 TCTGTTGCATATTTTCTCGGGATTAT 59.002 34.615 0.00 0.00 0.00 1.28
3304 3513 9.398170 CTGGTGTTCATACTTATTTTTCTGTTG 57.602 33.333 0.00 0.00 0.00 3.33
3315 3524 7.179516 TGTTGATACCTCTGGTGTTCATACTTA 59.820 37.037 0.00 0.00 36.19 2.24
3318 3527 5.730550 TGTTGATACCTCTGGTGTTCATAC 58.269 41.667 0.00 5.29 36.19 2.39
3320 3529 4.908601 TGTTGATACCTCTGGTGTTCAT 57.091 40.909 0.00 0.00 36.19 2.57
3326 3535 8.554490 AGAGTATAATTGTTGATACCTCTGGT 57.446 34.615 0.00 0.00 40.16 4.00
3327 3536 8.865090 AGAGAGTATAATTGTTGATACCTCTGG 58.135 37.037 11.96 0.00 36.23 3.86
3344 3553 3.565764 TTTCCGGACGGAGAGAGTATA 57.434 47.619 13.64 0.00 46.06 1.47
3350 3559 2.165845 ACAAGTATTTCCGGACGGAGAG 59.834 50.000 13.64 0.20 46.06 3.20
3351 3560 2.165030 GACAAGTATTTCCGGACGGAGA 59.835 50.000 13.64 10.06 46.06 3.71
3352 3561 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
3353 3562 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
3355 3564 2.534349 CGATGACAAGTATTTCCGGACG 59.466 50.000 1.83 0.00 0.00 4.79
3356 3565 3.777478 TCGATGACAAGTATTTCCGGAC 58.223 45.455 1.83 0.00 0.00 4.79
3357 3566 4.459390 TTCGATGACAAGTATTTCCGGA 57.541 40.909 0.00 0.00 0.00 5.14
3358 3567 5.501715 CATTTCGATGACAAGTATTTCCGG 58.498 41.667 0.00 0.00 0.00 5.14
3359 3568 5.293324 TCCATTTCGATGACAAGTATTTCCG 59.707 40.000 0.00 0.00 0.00 4.30
3360 3569 6.093495 TGTCCATTTCGATGACAAGTATTTCC 59.907 38.462 5.46 0.00 0.00 3.13
3361 3570 7.072177 TGTCCATTTCGATGACAAGTATTTC 57.928 36.000 5.46 0.00 0.00 2.17
3362 3571 7.447374 TTGTCCATTTCGATGACAAGTATTT 57.553 32.000 13.14 0.00 32.78 1.40
3363 3572 7.447374 TTTGTCCATTTCGATGACAAGTATT 57.553 32.000 15.31 0.00 37.13 1.89
3365 3574 6.708502 TCTTTTGTCCATTTCGATGACAAGTA 59.291 34.615 15.31 9.99 37.13 2.24
3367 3576 6.000891 TCTTTTGTCCATTTCGATGACAAG 57.999 37.500 15.31 8.97 37.13 3.16
3368 3577 6.016360 ACATCTTTTGTCCATTTCGATGACAA 60.016 34.615 13.14 13.14 30.89 3.18
3369 3578 5.473162 ACATCTTTTGTCCATTTCGATGACA 59.527 36.000 0.00 4.18 30.89 3.58
3370 3579 5.942872 ACATCTTTTGTCCATTTCGATGAC 58.057 37.500 0.00 0.00 30.89 3.06
3371 3580 7.770433 AGATACATCTTTTGTCCATTTCGATGA 59.230 33.333 0.00 0.00 39.87 2.92
3372 3581 7.923888 AGATACATCTTTTGTCCATTTCGATG 58.076 34.615 0.00 0.00 39.87 3.84
3374 3583 8.474831 TCTAGATACATCTTTTGTCCATTTCGA 58.525 33.333 0.00 0.00 39.87 3.71
3375 3584 8.543774 GTCTAGATACATCTTTTGTCCATTTCG 58.456 37.037 0.00 0.00 39.87 3.46
3376 3585 8.543774 CGTCTAGATACATCTTTTGTCCATTTC 58.456 37.037 0.00 0.00 39.87 2.17
3377 3586 8.041323 ACGTCTAGATACATCTTTTGTCCATTT 58.959 33.333 0.00 0.00 39.87 2.32
3378 3587 7.556844 ACGTCTAGATACATCTTTTGTCCATT 58.443 34.615 0.00 0.00 39.87 3.16
3379 3588 7.113658 ACGTCTAGATACATCTTTTGTCCAT 57.886 36.000 0.00 0.00 39.87 3.41
3380 3589 6.525578 ACGTCTAGATACATCTTTTGTCCA 57.474 37.500 0.00 0.00 39.87 4.02
3419 3628 9.657419 GTCATCAAAATGGATAAAAAGGAATGT 57.343 29.630 0.00 0.00 33.42 2.71
3420 3629 9.656040 TGTCATCAAAATGGATAAAAAGGAATG 57.344 29.630 0.00 0.00 33.42 2.67
3431 3640 9.316730 CCGAAAATATTTGTCATCAAAATGGAT 57.683 29.630 0.39 0.00 44.97 3.41
3432 3641 8.526978 TCCGAAAATATTTGTCATCAAAATGGA 58.473 29.630 0.39 0.00 44.97 3.41
3433 3642 8.594687 GTCCGAAAATATTTGTCATCAAAATGG 58.405 33.333 0.39 0.00 44.97 3.16
3434 3643 8.313227 CGTCCGAAAATATTTGTCATCAAAATG 58.687 33.333 0.39 0.00 44.97 2.32
3435 3644 7.009174 GCGTCCGAAAATATTTGTCATCAAAAT 59.991 33.333 0.39 0.00 44.97 1.82
3436 3645 6.306837 GCGTCCGAAAATATTTGTCATCAAAA 59.693 34.615 0.39 0.00 44.97 2.44
3437 3646 5.797934 GCGTCCGAAAATATTTGTCATCAAA 59.202 36.000 0.39 0.00 45.71 2.69
3438 3647 5.106515 TGCGTCCGAAAATATTTGTCATCAA 60.107 36.000 0.39 0.00 0.00 2.57
3439 3648 4.393371 TGCGTCCGAAAATATTTGTCATCA 59.607 37.500 0.39 0.00 0.00 3.07
3440 3649 4.904116 TGCGTCCGAAAATATTTGTCATC 58.096 39.130 0.39 0.00 0.00 2.92
3441 3650 4.201910 CCTGCGTCCGAAAATATTTGTCAT 60.202 41.667 0.39 0.00 0.00 3.06
3442 3651 3.126171 CCTGCGTCCGAAAATATTTGTCA 59.874 43.478 0.39 0.00 0.00 3.58
3443 3652 3.372822 TCCTGCGTCCGAAAATATTTGTC 59.627 43.478 0.39 1.54 0.00 3.18
3444 3653 3.340034 TCCTGCGTCCGAAAATATTTGT 58.660 40.909 0.39 0.00 0.00 2.83
3445 3654 4.349663 TTCCTGCGTCCGAAAATATTTG 57.650 40.909 0.39 0.00 0.00 2.32
3446 3655 5.379732 TTTTCCTGCGTCCGAAAATATTT 57.620 34.783 0.00 0.00 34.03 1.40
3447 3656 4.674362 GCTTTTCCTGCGTCCGAAAATATT 60.674 41.667 6.26 0.00 37.35 1.28
3448 3657 3.181500 GCTTTTCCTGCGTCCGAAAATAT 60.181 43.478 6.26 0.00 37.35 1.28
3449 3658 2.160813 GCTTTTCCTGCGTCCGAAAATA 59.839 45.455 6.26 0.00 37.35 1.40
3450 3659 1.068541 GCTTTTCCTGCGTCCGAAAAT 60.069 47.619 6.26 0.00 37.35 1.82
3451 3660 0.309612 GCTTTTCCTGCGTCCGAAAA 59.690 50.000 0.00 0.00 36.71 2.29
3452 3661 0.816018 TGCTTTTCCTGCGTCCGAAA 60.816 50.000 0.00 0.00 0.00 3.46
3453 3662 1.227704 TGCTTTTCCTGCGTCCGAA 60.228 52.632 0.00 0.00 0.00 4.30
3454 3663 1.667830 CTGCTTTTCCTGCGTCCGA 60.668 57.895 0.00 0.00 0.00 4.55
3455 3664 2.680913 CCTGCTTTTCCTGCGTCCG 61.681 63.158 0.00 0.00 0.00 4.79
3456 3665 2.335712 CCCTGCTTTTCCTGCGTCC 61.336 63.158 0.00 0.00 0.00 4.79
3457 3666 2.982744 GCCCTGCTTTTCCTGCGTC 61.983 63.158 0.00 0.00 0.00 5.19
3458 3667 2.985847 GCCCTGCTTTTCCTGCGT 60.986 61.111 0.00 0.00 0.00 5.24
3459 3668 3.752339 GGCCCTGCTTTTCCTGCG 61.752 66.667 0.00 0.00 0.00 5.18
3460 3669 1.953231 GATGGCCCTGCTTTTCCTGC 61.953 60.000 0.00 0.00 0.00 4.85
3461 3670 0.324091 AGATGGCCCTGCTTTTCCTG 60.324 55.000 0.00 0.00 0.00 3.86
3462 3671 0.033699 GAGATGGCCCTGCTTTTCCT 60.034 55.000 0.00 0.00 0.00 3.36
3463 3672 0.033699 AGAGATGGCCCTGCTTTTCC 60.034 55.000 0.00 0.00 0.00 3.13
3464 3673 2.717639 TAGAGATGGCCCTGCTTTTC 57.282 50.000 0.00 0.00 0.00 2.29
3529 3741 1.388547 TGGCACCTGTGTTTGTCTTC 58.611 50.000 0.00 0.00 0.00 2.87
3578 3790 5.454755 CCCTCTCTCTCTCTCTCGAAATAGT 60.455 48.000 0.00 0.00 0.00 2.12
3580 3792 4.656575 TCCCTCTCTCTCTCTCTCGAAATA 59.343 45.833 0.00 0.00 0.00 1.40
3581 3793 3.458118 TCCCTCTCTCTCTCTCTCGAAAT 59.542 47.826 0.00 0.00 0.00 2.17
3584 3796 2.039418 CTCCCTCTCTCTCTCTCTCGA 58.961 57.143 0.00 0.00 0.00 4.04
3585 3797 1.070758 CCTCCCTCTCTCTCTCTCTCG 59.929 61.905 0.00 0.00 0.00 4.04
3586 3798 1.421646 CCCTCCCTCTCTCTCTCTCTC 59.578 61.905 0.00 0.00 0.00 3.20
3587 3799 1.010793 TCCCTCCCTCTCTCTCTCTCT 59.989 57.143 0.00 0.00 0.00 3.10
3588 3800 1.421646 CTCCCTCCCTCTCTCTCTCTC 59.578 61.905 0.00 0.00 0.00 3.20
3589 3801 1.522900 CTCCCTCCCTCTCTCTCTCT 58.477 60.000 0.00 0.00 0.00 3.10
3590 3802 0.478507 CCTCCCTCCCTCTCTCTCTC 59.521 65.000 0.00 0.00 0.00 3.20
3591 3803 0.047176 TCCTCCCTCCCTCTCTCTCT 59.953 60.000 0.00 0.00 0.00 3.10
3592 3804 0.478507 CTCCTCCCTCCCTCTCTCTC 59.521 65.000 0.00 0.00 0.00 3.20
3593 3805 0.998945 CCTCCTCCCTCCCTCTCTCT 60.999 65.000 0.00 0.00 0.00 3.10
3594 3806 1.541672 CCTCCTCCCTCCCTCTCTC 59.458 68.421 0.00 0.00 0.00 3.20
3601 3813 1.382009 GTCTGTCCCTCCTCCCTCC 60.382 68.421 0.00 0.00 0.00 4.30
3609 3821 3.970640 AGAATATTCCAGGTCTGTCCCTC 59.029 47.826 11.92 0.00 36.75 4.30
3655 4257 1.862602 ATTTGGCAACGGACGGAAGC 61.863 55.000 0.00 0.00 42.51 3.86
3657 4259 0.535328 TCATTTGGCAACGGACGGAA 60.535 50.000 0.00 0.00 42.51 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.