Multiple sequence alignment - TraesCS1A01G042100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G042100 chr1A 100.000 3037 0 0 779 3815 22818983 22815947 0.000000e+00 5609.0
1 TraesCS1A01G042100 chr1A 83.488 1938 206 55 959 2808 13271943 13273854 0.000000e+00 1701.0
2 TraesCS1A01G042100 chr1A 88.789 1329 132 10 1524 2844 22790609 22789290 0.000000e+00 1613.0
3 TraesCS1A01G042100 chr1A 88.578 1287 131 9 1530 2808 13213036 13214314 0.000000e+00 1548.0
4 TraesCS1A01G042100 chr1A 88.349 1296 132 11 1524 2808 13009268 13007981 0.000000e+00 1539.0
5 TraesCS1A01G042100 chr1A 100.000 455 0 0 1 455 22819761 22819307 0.000000e+00 841.0
6 TraesCS1A01G042100 chr1A 83.596 890 94 28 2841 3685 561413359 561414241 0.000000e+00 787.0
7 TraesCS1A01G042100 chr1A 83.990 837 70 34 831 1619 13010122 13009302 0.000000e+00 745.0
8 TraesCS1A01G042100 chr1A 87.105 380 38 7 1122 1496 13250467 13250840 1.640000e-113 420.0
9 TraesCS1A01G042100 chr1A 81.584 505 61 23 1138 1619 13229110 13229605 4.620000e-104 388.0
10 TraesCS1A01G042100 chr1A 94.340 212 12 0 1138 1349 13006340 13006129 3.680000e-85 326.0
11 TraesCS1A01G042100 chr1A 91.870 123 8 2 330 452 13010872 13010752 1.820000e-38 171.0
12 TraesCS1A01G042100 chr1D 93.365 1462 60 19 1417 2844 10836316 10837774 0.000000e+00 2128.0
13 TraesCS1A01G042100 chr1D 90.987 1287 105 5 1529 2808 10775143 10773861 0.000000e+00 1724.0
14 TraesCS1A01G042100 chr1D 89.377 1365 124 12 1490 2844 10763718 10762365 0.000000e+00 1698.0
15 TraesCS1A01G042100 chr1D 83.969 892 88 30 2841 3685 468593708 468594591 0.000000e+00 804.0
16 TraesCS1A01G042100 chr1D 89.760 459 47 0 1106 1564 10776918 10776460 4.250000e-164 588.0
17 TraesCS1A01G042100 chr1D 87.500 392 30 2 1118 1509 10835883 10836255 5.850000e-118 435.0
18 TraesCS1A01G042100 chr1B 88.543 1414 135 17 1417 2808 23775469 23776877 0.000000e+00 1688.0
19 TraesCS1A01G042100 chr1B 89.425 1286 124 7 1530 2808 39814791 39816071 0.000000e+00 1611.0
20 TraesCS1A01G042100 chr1B 88.521 1298 127 12 1526 2808 16225022 16223732 0.000000e+00 1552.0
21 TraesCS1A01G042100 chr1B 81.930 974 116 34 1143 2060 39806253 39807222 0.000000e+00 769.0
22 TraesCS1A01G042100 chr1B 83.164 885 79 34 2841 3685 647933837 647934691 0.000000e+00 745.0
23 TraesCS1A01G042100 chr1B 87.708 480 56 1 1085 1564 23774964 23775440 1.200000e-154 556.0
24 TraesCS1A01G042100 chr1B 87.531 401 24 5 998 1375 39814097 39814494 1.260000e-119 440.0
25 TraesCS1A01G042100 chr1B 93.953 215 13 0 1138 1352 39732228 39732442 3.680000e-85 326.0
26 TraesCS1A01G042100 chr1B 95.541 157 4 1 1375 1531 39814524 39814677 8.180000e-62 248.0
27 TraesCS1A01G042100 chr1B 90.066 151 12 1 1417 1564 16400485 16400635 3.890000e-45 193.0
28 TraesCS1A01G042100 chr1B 91.346 104 8 1 3709 3811 573449700 573449803 1.430000e-29 141.0
29 TraesCS1A01G042100 chr3D 97.724 791 14 3 3029 3815 539735254 539734464 0.000000e+00 1358.0
30 TraesCS1A01G042100 chr3D 98.325 418 5 2 3029 3444 495659982 495660399 0.000000e+00 732.0
31 TraesCS1A01G042100 chr3D 97.113 381 10 1 3436 3815 495661337 495661717 3.210000e-180 641.0
32 TraesCS1A01G042100 chr3D 89.238 223 6 10 2840 3044 495659740 495659962 2.920000e-66 263.0
33 TraesCS1A01G042100 chr3D 93.651 126 2 1 2840 2965 539735807 539735688 2.340000e-42 183.0
34 TraesCS1A01G042100 chr3D 92.537 67 4 1 2979 3044 539735335 539735269 1.130000e-15 95.3
35 TraesCS1A01G042100 chr7A 90.049 1015 55 26 2843 3815 676958437 676959447 0.000000e+00 1273.0
36 TraesCS1A01G042100 chr5A 84.157 991 107 27 2847 3809 511959484 511960452 0.000000e+00 915.0
37 TraesCS1A01G042100 chr7B 83.824 1020 102 33 2843 3815 312403974 312404977 0.000000e+00 911.0
38 TraesCS1A01G042100 chr7B 82.326 645 69 22 2851 3456 251316155 251316793 5.650000e-143 518.0
39 TraesCS1A01G042100 chr7B 86.096 374 35 10 3450 3815 251325402 251325766 1.660000e-103 387.0
40 TraesCS1A01G042100 chr2A 84.100 761 71 24 3091 3807 519546465 519545711 0.000000e+00 689.0
41 TraesCS1A01G042100 chr2A 85.507 69 8 2 2840 2907 38774070 38774003 1.900000e-08 71.3
42 TraesCS1A01G042100 chr3A 92.650 449 14 10 2841 3271 51601902 51601455 2.500000e-176 628.0
43 TraesCS1A01G042100 chr3A 96.942 327 9 1 3490 3815 52044918 52044592 7.210000e-152 547.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G042100 chr1A 22815947 22819761 3814 True 3225.000000 5609 100.000000 1 3815 2 chr1A.!!$R3 3814
1 TraesCS1A01G042100 chr1A 13271943 13273854 1911 False 1701.000000 1701 83.488000 959 2808 1 chr1A.!!$F4 1849
2 TraesCS1A01G042100 chr1A 22789290 22790609 1319 True 1613.000000 1613 88.789000 1524 2844 1 chr1A.!!$R1 1320
3 TraesCS1A01G042100 chr1A 13213036 13214314 1278 False 1548.000000 1548 88.578000 1530 2808 1 chr1A.!!$F1 1278
4 TraesCS1A01G042100 chr1A 561413359 561414241 882 False 787.000000 787 83.596000 2841 3685 1 chr1A.!!$F5 844
5 TraesCS1A01G042100 chr1A 13006129 13010872 4743 True 695.250000 1539 89.637250 330 2808 4 chr1A.!!$R2 2478
6 TraesCS1A01G042100 chr1D 10762365 10763718 1353 True 1698.000000 1698 89.377000 1490 2844 1 chr1D.!!$R1 1354
7 TraesCS1A01G042100 chr1D 10835883 10837774 1891 False 1281.500000 2128 90.432500 1118 2844 2 chr1D.!!$F2 1726
8 TraesCS1A01G042100 chr1D 10773861 10776918 3057 True 1156.000000 1724 90.373500 1106 2808 2 chr1D.!!$R2 1702
9 TraesCS1A01G042100 chr1D 468593708 468594591 883 False 804.000000 804 83.969000 2841 3685 1 chr1D.!!$F1 844
10 TraesCS1A01G042100 chr1B 16223732 16225022 1290 True 1552.000000 1552 88.521000 1526 2808 1 chr1B.!!$R1 1282
11 TraesCS1A01G042100 chr1B 23774964 23776877 1913 False 1122.000000 1688 88.125500 1085 2808 2 chr1B.!!$F6 1723
12 TraesCS1A01G042100 chr1B 39806253 39807222 969 False 769.000000 769 81.930000 1143 2060 1 chr1B.!!$F3 917
13 TraesCS1A01G042100 chr1B 39814097 39816071 1974 False 766.333333 1611 90.832333 998 2808 3 chr1B.!!$F7 1810
14 TraesCS1A01G042100 chr1B 647933837 647934691 854 False 745.000000 745 83.164000 2841 3685 1 chr1B.!!$F5 844
15 TraesCS1A01G042100 chr3D 539734464 539735807 1343 True 545.433333 1358 94.637333 2840 3815 3 chr3D.!!$R1 975
16 TraesCS1A01G042100 chr3D 495659740 495661717 1977 False 545.333333 732 94.892000 2840 3815 3 chr3D.!!$F1 975
17 TraesCS1A01G042100 chr7A 676958437 676959447 1010 False 1273.000000 1273 90.049000 2843 3815 1 chr7A.!!$F1 972
18 TraesCS1A01G042100 chr5A 511959484 511960452 968 False 915.000000 915 84.157000 2847 3809 1 chr5A.!!$F1 962
19 TraesCS1A01G042100 chr7B 312403974 312404977 1003 False 911.000000 911 83.824000 2843 3815 1 chr7B.!!$F3 972
20 TraesCS1A01G042100 chr7B 251316155 251316793 638 False 518.000000 518 82.326000 2851 3456 1 chr7B.!!$F1 605
21 TraesCS1A01G042100 chr2A 519545711 519546465 754 True 689.000000 689 84.100000 3091 3807 1 chr2A.!!$R2 716

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
275 276 0.025513 GATCACTCGCAATCACGTGC 59.974 55.0 11.67 0.00 41.32 5.34 F
293 294 0.238817 GCGCTAGTGGAGGAGATACG 59.761 60.0 0.00 0.00 0.00 3.06 F
1878 3831 0.102300 TCGATGTCTATGGCCGTGTG 59.898 55.0 8.05 0.04 0.00 3.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1878 3831 2.097142 GTCAATGCTGTCTCTGGCAATC 59.903 50.0 0.00 0.0 41.90 2.67 R
1940 3893 2.149803 TACCTCGTTGACACGCTGGG 62.150 60.0 10.01 0.0 46.70 4.45 R
2939 5088 0.463620 TTTTGGAAACTGCCCAGCAC 59.536 50.0 0.00 0.0 34.77 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 8.807948 TTATTTAGTTCCTACCTACGTACAGT 57.192 34.615 0.00 0.00 0.00 3.55
38 39 9.899661 TTATTTAGTTCCTACCTACGTACAGTA 57.100 33.333 0.00 0.00 0.00 2.74
39 40 7.611213 TTTAGTTCCTACCTACGTACAGTAC 57.389 40.000 0.00 0.00 0.00 2.73
40 41 5.165961 AGTTCCTACCTACGTACAGTACA 57.834 43.478 11.37 0.00 0.00 2.90
41 42 4.938226 AGTTCCTACCTACGTACAGTACAC 59.062 45.833 11.37 0.00 0.00 2.90
42 43 4.551702 TCCTACCTACGTACAGTACACA 57.448 45.455 11.37 0.00 0.00 3.72
43 44 4.905429 TCCTACCTACGTACAGTACACAA 58.095 43.478 11.37 0.00 0.00 3.33
44 45 4.937620 TCCTACCTACGTACAGTACACAAG 59.062 45.833 11.37 4.60 0.00 3.16
45 46 4.697352 CCTACCTACGTACAGTACACAAGT 59.303 45.833 11.37 5.34 0.00 3.16
46 47 4.494350 ACCTACGTACAGTACACAAGTG 57.506 45.455 11.37 0.00 34.42 3.16
47 48 3.240069 CCTACGTACAGTACACAAGTGC 58.760 50.000 11.37 0.00 31.00 4.40
48 49 1.762419 ACGTACAGTACACAAGTGCG 58.238 50.000 11.37 13.40 44.85 5.34
49 50 1.057636 CGTACAGTACACAAGTGCGG 58.942 55.000 11.37 0.00 37.64 5.69
50 51 0.788391 GTACAGTACACAAGTGCGGC 59.212 55.000 5.79 0.00 35.31 6.53
51 52 0.389757 TACAGTACACAAGTGCGGCA 59.610 50.000 0.00 0.00 35.31 5.69
52 53 0.880278 ACAGTACACAAGTGCGGCAG 60.880 55.000 1.18 0.00 35.31 4.85
53 54 1.301716 AGTACACAAGTGCGGCAGG 60.302 57.895 1.18 0.00 35.31 4.85
54 55 1.301401 GTACACAAGTGCGGCAGGA 60.301 57.895 1.18 0.00 0.00 3.86
55 56 0.882927 GTACACAAGTGCGGCAGGAA 60.883 55.000 1.18 0.00 0.00 3.36
56 57 0.602638 TACACAAGTGCGGCAGGAAG 60.603 55.000 1.18 0.00 0.00 3.46
57 58 1.893808 CACAAGTGCGGCAGGAAGT 60.894 57.895 1.18 0.00 0.00 3.01
58 59 1.893808 ACAAGTGCGGCAGGAAGTG 60.894 57.895 1.18 0.00 0.00 3.16
59 60 2.281761 AAGTGCGGCAGGAAGTGG 60.282 61.111 1.18 0.00 0.00 4.00
66 67 4.102113 GCAGGAAGTGGCATGGTT 57.898 55.556 0.00 0.00 0.00 3.67
67 68 2.354902 GCAGGAAGTGGCATGGTTT 58.645 52.632 0.00 0.00 0.00 3.27
68 69 0.681175 GCAGGAAGTGGCATGGTTTT 59.319 50.000 0.00 0.00 0.00 2.43
69 70 1.606224 GCAGGAAGTGGCATGGTTTTG 60.606 52.381 0.00 0.00 0.00 2.44
70 71 1.962807 CAGGAAGTGGCATGGTTTTGA 59.037 47.619 0.00 0.00 0.00 2.69
71 72 2.029649 CAGGAAGTGGCATGGTTTTGAG 60.030 50.000 0.00 0.00 0.00 3.02
72 73 2.158475 AGGAAGTGGCATGGTTTTGAGA 60.158 45.455 0.00 0.00 0.00 3.27
73 74 2.229784 GGAAGTGGCATGGTTTTGAGAG 59.770 50.000 0.00 0.00 0.00 3.20
74 75 2.957402 AGTGGCATGGTTTTGAGAGA 57.043 45.000 0.00 0.00 0.00 3.10
75 76 3.446442 AGTGGCATGGTTTTGAGAGAT 57.554 42.857 0.00 0.00 0.00 2.75
76 77 3.087031 AGTGGCATGGTTTTGAGAGATG 58.913 45.455 0.00 0.00 0.00 2.90
77 78 3.084039 GTGGCATGGTTTTGAGAGATGA 58.916 45.455 0.00 0.00 0.00 2.92
78 79 3.128242 GTGGCATGGTTTTGAGAGATGAG 59.872 47.826 0.00 0.00 0.00 2.90
79 80 3.009363 TGGCATGGTTTTGAGAGATGAGA 59.991 43.478 0.00 0.00 0.00 3.27
80 81 3.626670 GGCATGGTTTTGAGAGATGAGAG 59.373 47.826 0.00 0.00 0.00 3.20
81 82 4.260170 GCATGGTTTTGAGAGATGAGAGT 58.740 43.478 0.00 0.00 0.00 3.24
82 83 4.094590 GCATGGTTTTGAGAGATGAGAGTG 59.905 45.833 0.00 0.00 0.00 3.51
83 84 4.277515 TGGTTTTGAGAGATGAGAGTGG 57.722 45.455 0.00 0.00 0.00 4.00
84 85 3.903714 TGGTTTTGAGAGATGAGAGTGGA 59.096 43.478 0.00 0.00 0.00 4.02
85 86 4.347876 TGGTTTTGAGAGATGAGAGTGGAA 59.652 41.667 0.00 0.00 0.00 3.53
86 87 5.163205 TGGTTTTGAGAGATGAGAGTGGAAA 60.163 40.000 0.00 0.00 0.00 3.13
87 88 5.411053 GGTTTTGAGAGATGAGAGTGGAAAG 59.589 44.000 0.00 0.00 0.00 2.62
88 89 3.883830 TGAGAGATGAGAGTGGAAAGC 57.116 47.619 0.00 0.00 0.00 3.51
89 90 3.439154 TGAGAGATGAGAGTGGAAAGCT 58.561 45.455 0.00 0.00 0.00 3.74
90 91 3.446873 TGAGAGATGAGAGTGGAAAGCTC 59.553 47.826 0.00 0.00 0.00 4.09
91 92 3.439154 AGAGATGAGAGTGGAAAGCTCA 58.561 45.455 0.00 0.00 42.25 4.26
95 96 4.840716 ATGAGAGTGGAAAGCTCATCTT 57.159 40.909 0.00 0.00 43.79 2.40
96 97 4.199432 TGAGAGTGGAAAGCTCATCTTC 57.801 45.455 0.00 0.00 34.02 2.87
97 98 3.580022 TGAGAGTGGAAAGCTCATCTTCA 59.420 43.478 0.00 0.00 34.02 3.02
98 99 3.932089 GAGAGTGGAAAGCTCATCTTCAC 59.068 47.826 0.00 0.00 35.55 3.18
99 100 3.326006 AGAGTGGAAAGCTCATCTTCACA 59.674 43.478 0.00 0.00 34.02 3.58
100 101 3.406764 AGTGGAAAGCTCATCTTCACAC 58.593 45.455 0.00 0.00 39.55 3.82
101 102 2.485814 GTGGAAAGCTCATCTTCACACC 59.514 50.000 0.00 0.00 36.31 4.16
102 103 2.106338 TGGAAAGCTCATCTTCACACCA 59.894 45.455 0.00 0.00 32.88 4.17
103 104 3.245016 TGGAAAGCTCATCTTCACACCAT 60.245 43.478 0.00 0.00 32.88 3.55
104 105 3.128242 GGAAAGCTCATCTTCACACCATG 59.872 47.826 0.00 0.00 32.88 3.66
105 106 1.747709 AGCTCATCTTCACACCATGC 58.252 50.000 0.00 0.00 0.00 4.06
106 107 1.003928 AGCTCATCTTCACACCATGCA 59.996 47.619 0.00 0.00 0.00 3.96
107 108 1.400846 GCTCATCTTCACACCATGCAG 59.599 52.381 0.00 0.00 0.00 4.41
108 109 2.014857 CTCATCTTCACACCATGCAGG 58.985 52.381 0.00 0.00 45.67 4.85
109 110 0.454600 CATCTTCACACCATGCAGGC 59.545 55.000 0.00 0.00 43.14 4.85
110 111 0.038599 ATCTTCACACCATGCAGGCA 59.961 50.000 0.00 0.00 43.14 4.75
111 112 0.178995 TCTTCACACCATGCAGGCAA 60.179 50.000 0.00 0.00 43.14 4.52
112 113 0.038892 CTTCACACCATGCAGGCAAC 60.039 55.000 0.00 0.00 43.14 4.17
129 130 4.974591 GGCAACTGTTCACATGAGATAAC 58.025 43.478 0.00 0.00 0.00 1.89
130 131 4.455533 GGCAACTGTTCACATGAGATAACA 59.544 41.667 0.00 0.00 0.00 2.41
136 137 7.288317 CTGTTCACATGAGATAACAGTCTTC 57.712 40.000 13.70 0.00 42.36 2.87
137 138 6.758254 TGTTCACATGAGATAACAGTCTTCA 58.242 36.000 0.00 0.00 0.00 3.02
138 139 6.646653 TGTTCACATGAGATAACAGTCTTCAC 59.353 38.462 0.00 0.00 0.00 3.18
139 140 5.402398 TCACATGAGATAACAGTCTTCACG 58.598 41.667 0.00 0.00 0.00 4.35
140 141 4.032217 CACATGAGATAACAGTCTTCACGC 59.968 45.833 0.00 0.00 0.00 5.34
141 142 3.934457 TGAGATAACAGTCTTCACGCA 57.066 42.857 0.00 0.00 0.00 5.24
142 143 4.251543 TGAGATAACAGTCTTCACGCAA 57.748 40.909 0.00 0.00 0.00 4.85
143 144 4.627058 TGAGATAACAGTCTTCACGCAAA 58.373 39.130 0.00 0.00 0.00 3.68
144 145 5.053811 TGAGATAACAGTCTTCACGCAAAA 58.946 37.500 0.00 0.00 0.00 2.44
145 146 5.050363 TGAGATAACAGTCTTCACGCAAAAC 60.050 40.000 0.00 0.00 0.00 2.43
146 147 5.057149 AGATAACAGTCTTCACGCAAAACT 58.943 37.500 0.00 0.00 0.00 2.66
147 148 5.527582 AGATAACAGTCTTCACGCAAAACTT 59.472 36.000 0.00 0.00 0.00 2.66
148 149 3.405170 ACAGTCTTCACGCAAAACTTG 57.595 42.857 0.00 0.00 0.00 3.16
149 150 3.006940 ACAGTCTTCACGCAAAACTTGA 58.993 40.909 0.00 0.00 0.00 3.02
150 151 3.438781 ACAGTCTTCACGCAAAACTTGAA 59.561 39.130 0.00 0.00 35.44 2.69
153 154 2.796304 CTTCACGCAAAACTTGAAGCA 58.204 42.857 0.00 0.00 44.65 3.91
154 155 3.374745 CTTCACGCAAAACTTGAAGCAT 58.625 40.909 0.00 0.00 44.65 3.79
155 156 2.730069 TCACGCAAAACTTGAAGCATG 58.270 42.857 0.00 0.00 0.00 4.06
156 157 1.190763 CACGCAAAACTTGAAGCATGC 59.809 47.619 10.51 10.51 0.00 4.06
157 158 1.202394 ACGCAAAACTTGAAGCATGCA 60.202 42.857 21.98 0.00 33.55 3.96
158 159 1.454276 CGCAAAACTTGAAGCATGCAG 59.546 47.619 21.98 10.97 33.55 4.41
159 160 2.746269 GCAAAACTTGAAGCATGCAGA 58.254 42.857 21.98 0.00 34.10 4.26
160 161 2.729882 GCAAAACTTGAAGCATGCAGAG 59.270 45.455 21.98 13.50 34.10 3.35
161 162 3.551454 GCAAAACTTGAAGCATGCAGAGA 60.551 43.478 21.98 1.93 34.10 3.10
162 163 4.227538 CAAAACTTGAAGCATGCAGAGAG 58.772 43.478 21.98 14.21 0.00 3.20
163 164 2.110901 ACTTGAAGCATGCAGAGAGG 57.889 50.000 21.98 7.68 0.00 3.69
164 165 1.339824 ACTTGAAGCATGCAGAGAGGG 60.340 52.381 21.98 6.05 0.00 4.30
165 166 0.986527 TTGAAGCATGCAGAGAGGGA 59.013 50.000 21.98 0.00 0.00 4.20
166 167 0.251354 TGAAGCATGCAGAGAGGGAC 59.749 55.000 21.98 0.79 0.00 4.46
168 169 1.759445 GAAGCATGCAGAGAGGGACTA 59.241 52.381 21.98 0.00 41.55 2.59
169 170 1.871418 AGCATGCAGAGAGGGACTAA 58.129 50.000 21.98 0.00 41.55 2.24
170 171 2.406559 AGCATGCAGAGAGGGACTAAT 58.593 47.619 21.98 0.00 41.55 1.73
171 172 2.104451 AGCATGCAGAGAGGGACTAATG 59.896 50.000 21.98 0.00 41.55 1.90
172 173 2.158842 GCATGCAGAGAGGGACTAATGT 60.159 50.000 14.21 0.00 41.55 2.71
173 174 3.683847 GCATGCAGAGAGGGACTAATGTT 60.684 47.826 14.21 0.00 41.55 2.71
174 175 3.616956 TGCAGAGAGGGACTAATGTTG 57.383 47.619 0.00 0.00 41.55 3.33
175 176 2.237143 TGCAGAGAGGGACTAATGTTGG 59.763 50.000 0.00 0.00 41.55 3.77
176 177 2.237392 GCAGAGAGGGACTAATGTTGGT 59.763 50.000 0.00 0.00 41.55 3.67
177 178 3.680196 GCAGAGAGGGACTAATGTTGGTC 60.680 52.174 1.10 1.10 41.55 4.02
178 179 3.772025 CAGAGAGGGACTAATGTTGGTCT 59.228 47.826 8.78 0.00 41.55 3.85
179 180 4.223923 CAGAGAGGGACTAATGTTGGTCTT 59.776 45.833 8.78 0.00 41.55 3.01
180 181 4.223923 AGAGAGGGACTAATGTTGGTCTTG 59.776 45.833 8.78 0.00 41.55 3.02
181 182 3.010420 GAGGGACTAATGTTGGTCTTGC 58.990 50.000 8.78 0.00 41.55 4.01
182 183 2.375174 AGGGACTAATGTTGGTCTTGCA 59.625 45.455 8.78 0.00 38.55 4.08
183 184 2.749621 GGGACTAATGTTGGTCTTGCAG 59.250 50.000 8.78 0.00 38.55 4.41
184 185 2.162408 GGACTAATGTTGGTCTTGCAGC 59.838 50.000 8.78 0.00 38.55 5.25
185 186 1.806542 ACTAATGTTGGTCTTGCAGCG 59.193 47.619 0.00 0.00 0.00 5.18
186 187 1.806542 CTAATGTTGGTCTTGCAGCGT 59.193 47.619 0.00 0.00 0.00 5.07
187 188 1.890876 AATGTTGGTCTTGCAGCGTA 58.109 45.000 0.00 0.00 0.00 4.42
188 189 1.156736 ATGTTGGTCTTGCAGCGTAC 58.843 50.000 0.00 0.00 0.00 3.67
189 190 0.882927 TGTTGGTCTTGCAGCGTACC 60.883 55.000 4.10 4.10 0.00 3.34
190 191 0.882927 GTTGGTCTTGCAGCGTACCA 60.883 55.000 8.80 8.80 40.19 3.25
191 192 0.179043 TTGGTCTTGCAGCGTACCAA 60.179 50.000 17.70 17.70 46.88 3.67
192 193 0.882927 TGGTCTTGCAGCGTACCAAC 60.883 55.000 10.14 0.00 39.02 3.77
193 194 0.882927 GGTCTTGCAGCGTACCAACA 60.883 55.000 5.89 0.00 32.04 3.33
194 195 1.156736 GTCTTGCAGCGTACCAACAT 58.843 50.000 0.00 0.00 0.00 2.71
195 196 1.135972 GTCTTGCAGCGTACCAACATG 60.136 52.381 0.00 0.00 0.00 3.21
196 197 0.454957 CTTGCAGCGTACCAACATGC 60.455 55.000 0.00 0.00 38.07 4.06
197 198 1.861542 TTGCAGCGTACCAACATGCC 61.862 55.000 0.00 0.00 37.23 4.40
198 199 3.051392 GCAGCGTACCAACATGCCC 62.051 63.158 0.00 0.00 33.79 5.36
199 200 1.673993 CAGCGTACCAACATGCCCA 60.674 57.895 0.00 0.00 0.00 5.36
200 201 1.674322 AGCGTACCAACATGCCCAC 60.674 57.895 0.00 0.00 0.00 4.61
201 202 2.696759 GCGTACCAACATGCCCACC 61.697 63.158 0.00 0.00 0.00 4.61
202 203 1.302913 CGTACCAACATGCCCACCA 60.303 57.895 0.00 0.00 0.00 4.17
203 204 0.679640 CGTACCAACATGCCCACCAT 60.680 55.000 0.00 0.00 33.39 3.55
216 217 3.985410 CACCATGGTGGAGTTGGAT 57.015 52.632 33.56 0.00 40.96 3.41
218 219 2.923121 CACCATGGTGGAGTTGGATAG 58.077 52.381 33.56 6.51 40.96 2.08
219 220 1.212935 ACCATGGTGGAGTTGGATAGC 59.787 52.381 18.99 0.00 40.96 2.97
220 221 1.212688 CCATGGTGGAGTTGGATAGCA 59.787 52.381 2.57 0.00 40.96 3.49
221 222 2.292267 CATGGTGGAGTTGGATAGCAC 58.708 52.381 0.00 0.00 0.00 4.40
222 223 1.656587 TGGTGGAGTTGGATAGCACT 58.343 50.000 0.00 0.00 0.00 4.40
223 224 1.278985 TGGTGGAGTTGGATAGCACTG 59.721 52.381 0.00 0.00 0.00 3.66
224 225 1.555075 GGTGGAGTTGGATAGCACTGA 59.445 52.381 0.00 0.00 0.00 3.41
225 226 2.027192 GGTGGAGTTGGATAGCACTGAA 60.027 50.000 0.00 0.00 0.00 3.02
226 227 3.265791 GTGGAGTTGGATAGCACTGAAG 58.734 50.000 0.00 0.00 0.00 3.02
227 228 2.284190 GGAGTTGGATAGCACTGAAGC 58.716 52.381 0.00 0.00 0.00 3.86
228 229 1.929836 GAGTTGGATAGCACTGAAGCG 59.070 52.381 0.00 0.00 40.15 4.68
229 230 1.009829 GTTGGATAGCACTGAAGCGG 58.990 55.000 0.00 0.00 40.15 5.52
230 231 0.613260 TTGGATAGCACTGAAGCGGT 59.387 50.000 0.00 0.00 40.15 5.68
231 232 0.175760 TGGATAGCACTGAAGCGGTC 59.824 55.000 0.00 0.00 40.15 4.79
232 233 0.461961 GGATAGCACTGAAGCGGTCT 59.538 55.000 0.00 0.00 40.15 3.85
233 234 1.134670 GGATAGCACTGAAGCGGTCTT 60.135 52.381 0.00 0.00 40.15 3.01
234 235 1.929836 GATAGCACTGAAGCGGTCTTG 59.070 52.381 0.00 0.00 40.15 3.02
235 236 0.966179 TAGCACTGAAGCGGTCTTGA 59.034 50.000 0.00 0.00 40.15 3.02
236 237 0.322975 AGCACTGAAGCGGTCTTGAT 59.677 50.000 0.00 0.00 40.15 2.57
237 238 0.445436 GCACTGAAGCGGTCTTGATG 59.555 55.000 0.00 0.00 31.48 3.07
238 239 1.800805 CACTGAAGCGGTCTTGATGT 58.199 50.000 0.00 0.00 31.48 3.06
239 240 2.146342 CACTGAAGCGGTCTTGATGTT 58.854 47.619 0.00 0.00 31.48 2.71
240 241 2.096069 CACTGAAGCGGTCTTGATGTTG 60.096 50.000 0.00 0.00 31.48 3.33
241 242 2.146342 CTGAAGCGGTCTTGATGTTGT 58.854 47.619 0.00 0.00 31.48 3.32
242 243 2.143122 TGAAGCGGTCTTGATGTTGTC 58.857 47.619 0.00 0.00 31.48 3.18
243 244 2.143122 GAAGCGGTCTTGATGTTGTCA 58.857 47.619 0.00 0.00 31.48 3.58
244 245 2.479566 AGCGGTCTTGATGTTGTCAT 57.520 45.000 0.00 0.00 36.54 3.06
256 257 4.928601 GATGTTGTCATCATGGTCAATGG 58.071 43.478 1.01 0.00 46.78 3.16
257 258 4.031636 TGTTGTCATCATGGTCAATGGA 57.968 40.909 0.00 0.00 36.86 3.41
258 259 4.602107 TGTTGTCATCATGGTCAATGGAT 58.398 39.130 0.00 0.00 36.86 3.41
259 260 4.641541 TGTTGTCATCATGGTCAATGGATC 59.358 41.667 0.00 0.00 36.86 3.36
260 261 4.506937 TGTCATCATGGTCAATGGATCA 57.493 40.909 0.00 0.00 38.82 2.92
261 262 4.201657 TGTCATCATGGTCAATGGATCAC 58.798 43.478 0.00 0.00 36.87 3.06
262 263 4.080186 TGTCATCATGGTCAATGGATCACT 60.080 41.667 0.00 0.00 36.87 3.41
263 264 4.514441 GTCATCATGGTCAATGGATCACTC 59.486 45.833 0.00 0.00 36.87 3.51
264 265 3.183793 TCATGGTCAATGGATCACTCG 57.816 47.619 0.00 0.00 36.87 4.18
265 266 1.600957 CATGGTCAATGGATCACTCGC 59.399 52.381 0.00 0.00 36.87 5.03
266 267 0.612744 TGGTCAATGGATCACTCGCA 59.387 50.000 0.00 0.00 0.00 5.10
267 268 1.003003 TGGTCAATGGATCACTCGCAA 59.997 47.619 0.00 0.00 0.00 4.85
268 269 2.292267 GGTCAATGGATCACTCGCAAT 58.708 47.619 0.00 0.00 0.00 3.56
269 270 2.289002 GGTCAATGGATCACTCGCAATC 59.711 50.000 0.00 0.00 0.00 2.67
270 271 2.938451 GTCAATGGATCACTCGCAATCA 59.062 45.455 0.00 0.00 0.00 2.57
271 272 2.938451 TCAATGGATCACTCGCAATCAC 59.062 45.455 0.00 0.00 0.00 3.06
272 273 1.575244 ATGGATCACTCGCAATCACG 58.425 50.000 0.00 0.00 0.00 4.35
273 274 0.246360 TGGATCACTCGCAATCACGT 59.754 50.000 0.00 0.00 0.00 4.49
274 275 0.647410 GGATCACTCGCAATCACGTG 59.353 55.000 9.94 9.94 0.00 4.49
275 276 0.025513 GATCACTCGCAATCACGTGC 59.974 55.000 11.67 0.00 41.32 5.34
281 282 3.474806 GCAATCACGTGCGCTAGT 58.525 55.556 11.67 5.62 34.21 2.57
282 283 1.059369 GCAATCACGTGCGCTAGTG 59.941 57.895 23.28 23.28 39.55 2.74
283 284 1.709760 CAATCACGTGCGCTAGTGG 59.290 57.895 26.63 13.28 38.77 4.00
284 285 0.735978 CAATCACGTGCGCTAGTGGA 60.736 55.000 26.63 17.47 38.77 4.02
285 286 0.458543 AATCACGTGCGCTAGTGGAG 60.459 55.000 26.63 9.63 38.77 3.86
286 287 2.284798 ATCACGTGCGCTAGTGGAGG 62.285 60.000 26.63 14.86 38.77 4.30
287 288 2.675423 ACGTGCGCTAGTGGAGGA 60.675 61.111 21.96 0.00 0.00 3.71
288 289 2.103143 CGTGCGCTAGTGGAGGAG 59.897 66.667 9.73 0.00 0.00 3.69
289 290 2.407428 CGTGCGCTAGTGGAGGAGA 61.407 63.158 9.73 0.00 0.00 3.71
290 291 1.729470 CGTGCGCTAGTGGAGGAGAT 61.729 60.000 9.73 0.00 0.00 2.75
291 292 1.319541 GTGCGCTAGTGGAGGAGATA 58.680 55.000 9.73 0.00 0.00 1.98
292 293 1.001158 GTGCGCTAGTGGAGGAGATAC 60.001 57.143 9.73 0.00 0.00 2.24
293 294 0.238817 GCGCTAGTGGAGGAGATACG 59.761 60.000 0.00 0.00 0.00 3.06
294 295 0.238817 CGCTAGTGGAGGAGATACGC 59.761 60.000 0.00 0.00 0.00 4.42
295 296 1.319541 GCTAGTGGAGGAGATACGCA 58.680 55.000 0.00 0.00 0.00 5.24
296 297 1.889829 GCTAGTGGAGGAGATACGCAT 59.110 52.381 0.00 0.00 0.00 4.73
297 298 2.352225 GCTAGTGGAGGAGATACGCATG 60.352 54.545 0.00 0.00 0.00 4.06
298 299 2.073252 AGTGGAGGAGATACGCATGA 57.927 50.000 0.00 0.00 0.00 3.07
299 300 2.603021 AGTGGAGGAGATACGCATGAT 58.397 47.619 0.00 0.00 0.00 2.45
300 301 2.560542 AGTGGAGGAGATACGCATGATC 59.439 50.000 0.00 0.00 0.00 2.92
301 302 2.297315 GTGGAGGAGATACGCATGATCA 59.703 50.000 0.00 0.00 0.00 2.92
302 303 2.560105 TGGAGGAGATACGCATGATCAG 59.440 50.000 0.09 0.00 0.00 2.90
303 304 2.560542 GGAGGAGATACGCATGATCAGT 59.439 50.000 0.09 0.00 0.00 3.41
304 305 3.759086 GGAGGAGATACGCATGATCAGTA 59.241 47.826 0.09 0.00 0.00 2.74
305 306 4.142491 GGAGGAGATACGCATGATCAGTAG 60.142 50.000 0.09 0.00 0.00 2.57
306 307 3.192422 AGGAGATACGCATGATCAGTAGC 59.808 47.826 0.09 4.54 0.00 3.58
307 308 3.057245 GGAGATACGCATGATCAGTAGCA 60.057 47.826 15.19 0.79 0.00 3.49
308 309 4.550422 GAGATACGCATGATCAGTAGCAA 58.450 43.478 15.19 5.59 0.00 3.91
309 310 4.948847 AGATACGCATGATCAGTAGCAAA 58.051 39.130 15.19 5.31 0.00 3.68
310 311 5.545588 AGATACGCATGATCAGTAGCAAAT 58.454 37.500 15.19 8.90 0.00 2.32
311 312 3.957671 ACGCATGATCAGTAGCAAATG 57.042 42.857 15.19 2.12 0.00 2.32
312 313 3.534554 ACGCATGATCAGTAGCAAATGA 58.465 40.909 15.19 0.00 0.00 2.57
313 314 3.940852 ACGCATGATCAGTAGCAAATGAA 59.059 39.130 15.19 0.00 0.00 2.57
314 315 4.577693 ACGCATGATCAGTAGCAAATGAAT 59.422 37.500 15.19 0.00 0.00 2.57
315 316 5.145059 CGCATGATCAGTAGCAAATGAATC 58.855 41.667 15.19 0.00 0.00 2.52
316 317 5.277634 CGCATGATCAGTAGCAAATGAATCA 60.278 40.000 15.19 0.00 0.00 2.57
317 318 6.500910 GCATGATCAGTAGCAAATGAATCAA 58.499 36.000 0.09 0.00 0.00 2.57
318 319 6.637254 GCATGATCAGTAGCAAATGAATCAAG 59.363 38.462 0.09 0.00 0.00 3.02
319 320 6.688637 TGATCAGTAGCAAATGAATCAAGG 57.311 37.500 0.00 0.00 0.00 3.61
320 321 5.591472 TGATCAGTAGCAAATGAATCAAGGG 59.409 40.000 0.00 0.00 0.00 3.95
321 322 5.178096 TCAGTAGCAAATGAATCAAGGGA 57.822 39.130 0.00 0.00 0.00 4.20
322 323 5.188434 TCAGTAGCAAATGAATCAAGGGAG 58.812 41.667 0.00 0.00 0.00 4.30
323 324 5.045651 TCAGTAGCAAATGAATCAAGGGAGA 60.046 40.000 0.00 0.00 0.00 3.71
324 325 5.826737 CAGTAGCAAATGAATCAAGGGAGAT 59.173 40.000 0.00 0.00 0.00 2.75
325 326 6.320672 CAGTAGCAAATGAATCAAGGGAGATT 59.679 38.462 0.00 0.00 40.75 2.40
326 327 6.894103 AGTAGCAAATGAATCAAGGGAGATTT 59.106 34.615 0.00 0.00 38.30 2.17
327 328 6.218108 AGCAAATGAATCAAGGGAGATTTC 57.782 37.500 0.00 0.00 38.30 2.17
328 329 5.718130 AGCAAATGAATCAAGGGAGATTTCA 59.282 36.000 0.00 0.00 38.30 2.69
343 344 9.705103 AGGGAGATTTCATTTTCTCATATTTGA 57.295 29.630 2.72 0.00 40.13 2.69
406 407 5.163622 TGGAACGTAGTACCAGTAATGCTAC 60.164 44.000 0.00 0.00 45.00 3.58
412 413 5.677319 AGTACCAGTAATGCTACACACAT 57.323 39.130 0.00 0.00 0.00 3.21
413 414 5.419542 AGTACCAGTAATGCTACACACATG 58.580 41.667 0.00 0.00 0.00 3.21
416 417 3.609853 CAGTAATGCTACACACATGGGT 58.390 45.455 0.00 0.00 34.93 4.51
420 421 0.893270 TGCTACACACATGGGTTGGC 60.893 55.000 0.00 4.76 31.69 4.52
441 442 4.148891 GCTTTTACGAATTCAACCGACTG 58.851 43.478 6.22 0.00 0.00 3.51
452 453 1.553248 CAACCGACTGGGATTAGGTGA 59.447 52.381 0.00 0.00 40.75 4.02
453 454 1.946984 ACCGACTGGGATTAGGTGAA 58.053 50.000 0.00 0.00 40.75 3.18
796 797 3.402833 TGGTTGGGATCGGGACTAA 57.597 52.632 0.00 0.00 0.00 2.24
803 804 2.237893 TGGGATCGGGACTAAACCTTTC 59.762 50.000 0.00 0.00 0.00 2.62
843 1278 6.725364 TCCTTGAGCTAATGAAATCTTCCTT 58.275 36.000 0.00 0.00 0.00 3.36
845 1280 6.039159 CCTTGAGCTAATGAAATCTTCCTTCC 59.961 42.308 0.00 0.00 0.00 3.46
944 1379 9.796120 TGTGTATTCTTCAAACGAATTTTCTTT 57.204 25.926 0.00 0.00 33.47 2.52
1017 1478 3.660669 ACCAATAAAGAGGAAAGGGGTCA 59.339 43.478 0.00 0.00 0.00 4.02
1027 1488 4.640690 AGGGGTCAGACAGCGGGT 62.641 66.667 2.17 0.00 0.00 5.28
1341 1845 2.615869 GAAGAGTGTAAGCAGCCTCTG 58.384 52.381 0.00 0.00 34.62 3.35
1551 3487 3.547054 TCACTTAACAACAGGAACCGT 57.453 42.857 0.00 0.00 0.00 4.83
1621 3559 8.589338 TGATAGCTTTCTCTTGAAGTTAACTCT 58.411 33.333 8.95 0.00 33.28 3.24
1638 3585 8.437575 AGTTAACTCTGGAAGTGAAATAGGAAA 58.562 33.333 1.12 0.00 38.58 3.13
1648 3597 8.138074 GGAAGTGAAATAGGAAAATTAGATGGC 58.862 37.037 0.00 0.00 0.00 4.40
1696 3647 1.567357 ACACAAACTGGGGCTGTTTT 58.433 45.000 0.00 0.00 34.26 2.43
1778 3731 3.918591 CCAATGCGATACACCGATAGTAC 59.081 47.826 0.00 0.00 0.00 2.73
1878 3831 0.102300 TCGATGTCTATGGCCGTGTG 59.898 55.000 8.05 0.04 0.00 3.82
1940 3893 5.755375 TCTTTCACCGCAATAGAGATGATTC 59.245 40.000 0.00 0.00 0.00 2.52
2248 4231 7.598493 GCTGGTTGATTTCATCTATCTAGAGAC 59.402 40.741 0.00 0.00 35.50 3.36
2625 4611 9.973450 TCATTACTATCTGTCTAGAAAGAATGC 57.027 33.333 16.69 0.00 36.32 3.56
2639 4625 5.537674 AGAAAGAATGCTGGTGTTTCAGATT 59.462 36.000 0.00 0.00 36.93 2.40
2965 5127 5.298026 GCTGGGCAGTTTCCAAAATTAAAAA 59.702 36.000 0.00 0.00 33.36 1.94
2966 5128 6.513230 GCTGGGCAGTTTCCAAAATTAAAAAG 60.513 38.462 0.00 0.00 33.36 2.27
2967 5129 5.825151 TGGGCAGTTTCCAAAATTAAAAAGG 59.175 36.000 0.00 0.00 0.00 3.11
2970 5132 7.067615 GGGCAGTTTCCAAAATTAAAAAGGAAA 59.932 33.333 0.00 0.00 43.80 3.13
3096 5647 6.325919 ACGAGATCTAGATTGCTCCTTAAG 57.674 41.667 10.07 0.00 0.00 1.85
3579 7809 5.319453 AGATTGCTTCCAAGACATCTGAAA 58.681 37.500 0.00 0.00 33.80 2.69
3693 8223 3.250617 TGCTCAGATCTATATTGCCCCA 58.749 45.455 0.00 0.00 0.00 4.96
3781 8315 8.773021 CTTCCAACAGAAATAGCATTTGCTTCG 61.773 40.741 10.79 2.58 40.66 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 9.243105 ACTGTACGTAGGTAGGAACTAAATAAA 57.757 33.333 0.00 0.00 45.48 1.40
12 13 8.807948 ACTGTACGTAGGTAGGAACTAAATAA 57.192 34.615 0.00 0.00 45.48 1.40
13 14 9.326413 GTACTGTACGTAGGTAGGAACTAAATA 57.674 37.037 1.67 0.00 45.48 1.40
14 15 7.829211 TGTACTGTACGTAGGTAGGAACTAAAT 59.171 37.037 12.87 0.00 45.48 1.40
15 16 7.119262 GTGTACTGTACGTAGGTAGGAACTAAA 59.881 40.741 12.87 0.00 45.48 1.85
16 17 6.594159 GTGTACTGTACGTAGGTAGGAACTAA 59.406 42.308 12.87 0.00 45.48 2.24
17 18 6.106673 GTGTACTGTACGTAGGTAGGAACTA 58.893 44.000 12.87 0.00 41.75 2.24
18 19 4.938226 GTGTACTGTACGTAGGTAGGAACT 59.062 45.833 12.87 0.00 46.37 3.01
19 20 4.695455 TGTGTACTGTACGTAGGTAGGAAC 59.305 45.833 12.87 2.82 0.00 3.62
20 21 4.905429 TGTGTACTGTACGTAGGTAGGAA 58.095 43.478 12.87 0.00 0.00 3.36
21 22 4.551702 TGTGTACTGTACGTAGGTAGGA 57.448 45.455 12.87 0.00 0.00 2.94
22 23 4.697352 ACTTGTGTACTGTACGTAGGTAGG 59.303 45.833 12.87 0.00 0.00 3.18
23 24 5.625251 CACTTGTGTACTGTACGTAGGTAG 58.375 45.833 12.87 0.00 0.00 3.18
24 25 4.083324 GCACTTGTGTACTGTACGTAGGTA 60.083 45.833 12.87 0.00 0.00 3.08
25 26 3.304928 GCACTTGTGTACTGTACGTAGGT 60.305 47.826 12.87 8.02 0.00 3.08
26 27 3.240069 GCACTTGTGTACTGTACGTAGG 58.760 50.000 12.87 7.46 0.00 3.18
27 28 2.906776 CGCACTTGTGTACTGTACGTAG 59.093 50.000 12.87 11.43 0.00 3.51
28 29 2.350676 CCGCACTTGTGTACTGTACGTA 60.351 50.000 12.87 0.00 0.00 3.57
29 30 1.601162 CCGCACTTGTGTACTGTACGT 60.601 52.381 12.87 0.00 0.00 3.57
30 31 1.057636 CCGCACTTGTGTACTGTACG 58.942 55.000 12.87 1.80 0.00 3.67
31 32 0.788391 GCCGCACTTGTGTACTGTAC 59.212 55.000 10.98 10.98 0.00 2.90
32 33 0.389757 TGCCGCACTTGTGTACTGTA 59.610 50.000 2.61 0.00 0.00 2.74
33 34 0.880278 CTGCCGCACTTGTGTACTGT 60.880 55.000 2.61 0.00 0.00 3.55
34 35 1.568612 CCTGCCGCACTTGTGTACTG 61.569 60.000 2.61 0.00 0.00 2.74
35 36 1.301716 CCTGCCGCACTTGTGTACT 60.302 57.895 2.61 0.00 0.00 2.73
36 37 0.882927 TTCCTGCCGCACTTGTGTAC 60.883 55.000 2.61 0.00 0.00 2.90
37 38 0.602638 CTTCCTGCCGCACTTGTGTA 60.603 55.000 2.61 0.00 0.00 2.90
38 39 1.893808 CTTCCTGCCGCACTTGTGT 60.894 57.895 2.61 0.00 0.00 3.72
39 40 1.893808 ACTTCCTGCCGCACTTGTG 60.894 57.895 0.00 0.00 0.00 3.33
40 41 1.893808 CACTTCCTGCCGCACTTGT 60.894 57.895 0.00 0.00 0.00 3.16
41 42 2.620112 CCACTTCCTGCCGCACTTG 61.620 63.158 0.00 0.00 0.00 3.16
42 43 2.281761 CCACTTCCTGCCGCACTT 60.282 61.111 0.00 0.00 0.00 3.16
45 46 4.349503 ATGCCACTTCCTGCCGCA 62.350 61.111 0.00 0.00 0.00 5.69
46 47 3.818787 CATGCCACTTCCTGCCGC 61.819 66.667 0.00 0.00 0.00 6.53
47 48 3.136123 CCATGCCACTTCCTGCCG 61.136 66.667 0.00 0.00 0.00 5.69
48 49 1.187567 AAACCATGCCACTTCCTGCC 61.188 55.000 0.00 0.00 0.00 4.85
49 50 0.681175 AAAACCATGCCACTTCCTGC 59.319 50.000 0.00 0.00 0.00 4.85
50 51 1.962807 TCAAAACCATGCCACTTCCTG 59.037 47.619 0.00 0.00 0.00 3.86
51 52 2.158475 TCTCAAAACCATGCCACTTCCT 60.158 45.455 0.00 0.00 0.00 3.36
52 53 2.229784 CTCTCAAAACCATGCCACTTCC 59.770 50.000 0.00 0.00 0.00 3.46
53 54 3.149196 TCTCTCAAAACCATGCCACTTC 58.851 45.455 0.00 0.00 0.00 3.01
54 55 3.228188 TCTCTCAAAACCATGCCACTT 57.772 42.857 0.00 0.00 0.00 3.16
55 56 2.957402 TCTCTCAAAACCATGCCACT 57.043 45.000 0.00 0.00 0.00 4.00
56 57 3.084039 TCATCTCTCAAAACCATGCCAC 58.916 45.455 0.00 0.00 0.00 5.01
57 58 3.009363 TCTCATCTCTCAAAACCATGCCA 59.991 43.478 0.00 0.00 0.00 4.92
58 59 3.614092 TCTCATCTCTCAAAACCATGCC 58.386 45.455 0.00 0.00 0.00 4.40
59 60 4.094590 CACTCTCATCTCTCAAAACCATGC 59.905 45.833 0.00 0.00 0.00 4.06
60 61 4.634883 CCACTCTCATCTCTCAAAACCATG 59.365 45.833 0.00 0.00 0.00 3.66
61 62 4.533707 TCCACTCTCATCTCTCAAAACCAT 59.466 41.667 0.00 0.00 0.00 3.55
62 63 3.903714 TCCACTCTCATCTCTCAAAACCA 59.096 43.478 0.00 0.00 0.00 3.67
63 64 4.543590 TCCACTCTCATCTCTCAAAACC 57.456 45.455 0.00 0.00 0.00 3.27
64 65 5.106752 GCTTTCCACTCTCATCTCTCAAAAC 60.107 44.000 0.00 0.00 0.00 2.43
65 66 4.999950 GCTTTCCACTCTCATCTCTCAAAA 59.000 41.667 0.00 0.00 0.00 2.44
66 67 4.285517 AGCTTTCCACTCTCATCTCTCAAA 59.714 41.667 0.00 0.00 0.00 2.69
67 68 3.837146 AGCTTTCCACTCTCATCTCTCAA 59.163 43.478 0.00 0.00 0.00 3.02
68 69 3.439154 AGCTTTCCACTCTCATCTCTCA 58.561 45.455 0.00 0.00 0.00 3.27
69 70 3.446873 TGAGCTTTCCACTCTCATCTCTC 59.553 47.826 0.00 0.00 35.12 3.20
70 71 3.439154 TGAGCTTTCCACTCTCATCTCT 58.561 45.455 0.00 0.00 35.12 3.10
71 72 3.883830 TGAGCTTTCCACTCTCATCTC 57.116 47.619 0.00 0.00 35.12 2.75
74 75 4.224594 TGAAGATGAGCTTTCCACTCTCAT 59.775 41.667 3.90 3.90 46.68 2.90
75 76 3.580022 TGAAGATGAGCTTTCCACTCTCA 59.420 43.478 0.00 0.00 40.62 3.27
76 77 3.932089 GTGAAGATGAGCTTTCCACTCTC 59.068 47.826 0.00 0.00 36.83 3.20
77 78 3.326006 TGTGAAGATGAGCTTTCCACTCT 59.674 43.478 4.34 0.00 36.83 3.24
78 79 3.434984 GTGTGAAGATGAGCTTTCCACTC 59.565 47.826 4.34 0.00 36.83 3.51
79 80 3.406764 GTGTGAAGATGAGCTTTCCACT 58.593 45.455 4.34 0.00 36.83 4.00
80 81 2.485814 GGTGTGAAGATGAGCTTTCCAC 59.514 50.000 5.28 5.28 36.83 4.02
81 82 2.106338 TGGTGTGAAGATGAGCTTTCCA 59.894 45.455 0.00 0.00 36.83 3.53
82 83 2.783135 TGGTGTGAAGATGAGCTTTCC 58.217 47.619 0.00 0.00 36.83 3.13
83 84 3.427233 GCATGGTGTGAAGATGAGCTTTC 60.427 47.826 0.00 0.00 36.83 2.62
84 85 2.490903 GCATGGTGTGAAGATGAGCTTT 59.509 45.455 0.00 0.00 36.83 3.51
85 86 2.089980 GCATGGTGTGAAGATGAGCTT 58.910 47.619 0.00 0.00 40.25 3.74
86 87 1.003928 TGCATGGTGTGAAGATGAGCT 59.996 47.619 0.00 0.00 0.00 4.09
87 88 1.400846 CTGCATGGTGTGAAGATGAGC 59.599 52.381 0.00 0.00 35.21 4.26
88 89 2.014857 CCTGCATGGTGTGAAGATGAG 58.985 52.381 0.00 0.00 35.21 2.90
89 90 1.951895 GCCTGCATGGTGTGAAGATGA 60.952 52.381 0.00 0.00 35.21 2.92
90 91 0.454600 GCCTGCATGGTGTGAAGATG 59.545 55.000 0.00 0.00 35.21 2.90
91 92 0.038599 TGCCTGCATGGTGTGAAGAT 59.961 50.000 0.00 0.00 35.21 2.40
92 93 0.178995 TTGCCTGCATGGTGTGAAGA 60.179 50.000 0.00 0.00 35.21 2.87
93 94 0.038892 GTTGCCTGCATGGTGTGAAG 60.039 55.000 0.00 0.00 38.35 3.02
94 95 0.467844 AGTTGCCTGCATGGTGTGAA 60.468 50.000 0.00 0.00 38.35 3.18
95 96 1.151221 AGTTGCCTGCATGGTGTGA 59.849 52.632 0.00 0.00 38.35 3.58
96 97 1.287815 CAGTTGCCTGCATGGTGTG 59.712 57.895 0.00 0.00 38.35 3.82
97 98 0.756442 AACAGTTGCCTGCATGGTGT 60.756 50.000 0.00 0.00 42.81 4.16
98 99 0.038892 GAACAGTTGCCTGCATGGTG 60.039 55.000 0.00 0.00 42.81 4.17
99 100 0.467844 TGAACAGTTGCCTGCATGGT 60.468 50.000 0.00 0.00 42.81 3.55
100 101 0.038892 GTGAACAGTTGCCTGCATGG 60.039 55.000 0.00 0.00 42.81 3.66
101 102 0.669619 TGTGAACAGTTGCCTGCATG 59.330 50.000 0.00 0.00 42.81 4.06
102 103 1.271379 CATGTGAACAGTTGCCTGCAT 59.729 47.619 0.00 0.00 42.81 3.96
103 104 0.669619 CATGTGAACAGTTGCCTGCA 59.330 50.000 0.00 0.00 42.81 4.41
104 105 0.953727 TCATGTGAACAGTTGCCTGC 59.046 50.000 0.00 0.00 42.81 4.85
105 106 2.497138 TCTCATGTGAACAGTTGCCTG 58.503 47.619 0.00 0.00 44.68 4.85
106 107 2.936919 TCTCATGTGAACAGTTGCCT 57.063 45.000 0.00 0.00 0.00 4.75
107 108 4.455533 TGTTATCTCATGTGAACAGTTGCC 59.544 41.667 0.90 0.00 0.00 4.52
108 109 5.611796 TGTTATCTCATGTGAACAGTTGC 57.388 39.130 0.90 0.00 0.00 4.17
113 114 6.646653 GTGAAGACTGTTATCTCATGTGAACA 59.353 38.462 0.90 2.21 0.00 3.18
114 115 6.183360 CGTGAAGACTGTTATCTCATGTGAAC 60.183 42.308 0.90 0.00 0.00 3.18
115 116 5.863935 CGTGAAGACTGTTATCTCATGTGAA 59.136 40.000 0.90 0.00 0.00 3.18
116 117 5.402398 CGTGAAGACTGTTATCTCATGTGA 58.598 41.667 0.00 0.00 0.00 3.58
117 118 4.032217 GCGTGAAGACTGTTATCTCATGTG 59.968 45.833 0.00 0.00 0.00 3.21
118 119 4.177026 GCGTGAAGACTGTTATCTCATGT 58.823 43.478 0.00 0.00 0.00 3.21
119 120 4.176271 TGCGTGAAGACTGTTATCTCATG 58.824 43.478 0.00 0.00 0.00 3.07
120 121 4.456280 TGCGTGAAGACTGTTATCTCAT 57.544 40.909 0.00 0.00 0.00 2.90
121 122 3.934457 TGCGTGAAGACTGTTATCTCA 57.066 42.857 0.00 0.00 0.00 3.27
122 123 5.177696 AGTTTTGCGTGAAGACTGTTATCTC 59.822 40.000 0.00 0.00 0.00 2.75
123 124 5.057149 AGTTTTGCGTGAAGACTGTTATCT 58.943 37.500 0.00 0.00 0.00 1.98
124 125 5.344207 AGTTTTGCGTGAAGACTGTTATC 57.656 39.130 0.00 0.00 0.00 1.75
125 126 5.295787 TCAAGTTTTGCGTGAAGACTGTTAT 59.704 36.000 0.00 0.00 32.84 1.89
126 127 4.632251 TCAAGTTTTGCGTGAAGACTGTTA 59.368 37.500 0.00 0.00 32.84 2.41
127 128 3.438781 TCAAGTTTTGCGTGAAGACTGTT 59.561 39.130 0.00 0.00 32.84 3.16
128 129 3.006940 TCAAGTTTTGCGTGAAGACTGT 58.993 40.909 0.00 0.00 32.84 3.55
129 130 3.673746 TCAAGTTTTGCGTGAAGACTG 57.326 42.857 0.00 0.00 32.84 3.51
134 135 2.929531 TGCTTCAAGTTTTGCGTGAA 57.070 40.000 0.00 0.00 41.87 3.18
135 136 2.730069 CATGCTTCAAGTTTTGCGTGA 58.270 42.857 0.00 0.00 42.91 4.35
136 137 1.190763 GCATGCTTCAAGTTTTGCGTG 59.809 47.619 11.37 0.00 43.07 5.34
137 138 1.202394 TGCATGCTTCAAGTTTTGCGT 60.202 42.857 20.33 0.00 32.90 5.24
138 139 1.454276 CTGCATGCTTCAAGTTTTGCG 59.546 47.619 20.33 0.00 32.90 4.85
139 140 2.729882 CTCTGCATGCTTCAAGTTTTGC 59.270 45.455 20.33 2.48 0.00 3.68
140 141 4.227538 CTCTCTGCATGCTTCAAGTTTTG 58.772 43.478 20.33 1.34 0.00 2.44
141 142 3.255149 CCTCTCTGCATGCTTCAAGTTTT 59.745 43.478 20.33 0.00 0.00 2.43
142 143 2.818432 CCTCTCTGCATGCTTCAAGTTT 59.182 45.455 20.33 0.00 0.00 2.66
143 144 2.434428 CCTCTCTGCATGCTTCAAGTT 58.566 47.619 20.33 0.00 0.00 2.66
144 145 1.339824 CCCTCTCTGCATGCTTCAAGT 60.340 52.381 20.33 0.00 0.00 3.16
145 146 1.065636 TCCCTCTCTGCATGCTTCAAG 60.066 52.381 20.33 7.89 0.00 3.02
146 147 0.986527 TCCCTCTCTGCATGCTTCAA 59.013 50.000 20.33 0.00 0.00 2.69
147 148 0.251354 GTCCCTCTCTGCATGCTTCA 59.749 55.000 20.33 1.24 0.00 3.02
148 149 0.540923 AGTCCCTCTCTGCATGCTTC 59.459 55.000 20.33 0.00 0.00 3.86
149 150 1.871418 TAGTCCCTCTCTGCATGCTT 58.129 50.000 20.33 0.00 0.00 3.91
150 151 1.871418 TTAGTCCCTCTCTGCATGCT 58.129 50.000 20.33 0.00 0.00 3.79
151 152 2.158842 ACATTAGTCCCTCTCTGCATGC 60.159 50.000 11.82 11.82 0.00 4.06
152 153 3.834489 ACATTAGTCCCTCTCTGCATG 57.166 47.619 0.00 0.00 0.00 4.06
153 154 3.118112 CCAACATTAGTCCCTCTCTGCAT 60.118 47.826 0.00 0.00 0.00 3.96
154 155 2.237143 CCAACATTAGTCCCTCTCTGCA 59.763 50.000 0.00 0.00 0.00 4.41
155 156 2.237392 ACCAACATTAGTCCCTCTCTGC 59.763 50.000 0.00 0.00 0.00 4.26
156 157 3.772025 AGACCAACATTAGTCCCTCTCTG 59.228 47.826 0.00 0.00 33.29 3.35
157 158 4.067944 AGACCAACATTAGTCCCTCTCT 57.932 45.455 0.00 0.00 33.29 3.10
158 159 4.508662 CAAGACCAACATTAGTCCCTCTC 58.491 47.826 0.00 0.00 33.29 3.20
159 160 3.307762 GCAAGACCAACATTAGTCCCTCT 60.308 47.826 0.00 0.00 33.29 3.69
160 161 3.010420 GCAAGACCAACATTAGTCCCTC 58.990 50.000 0.00 0.00 33.29 4.30
161 162 2.375174 TGCAAGACCAACATTAGTCCCT 59.625 45.455 0.00 0.00 33.29 4.20
162 163 2.749621 CTGCAAGACCAACATTAGTCCC 59.250 50.000 0.00 0.00 34.07 4.46
163 164 2.162408 GCTGCAAGACCAACATTAGTCC 59.838 50.000 0.00 0.00 34.07 3.85
164 165 2.159653 CGCTGCAAGACCAACATTAGTC 60.160 50.000 0.00 0.00 34.07 2.59
165 166 1.806542 CGCTGCAAGACCAACATTAGT 59.193 47.619 0.00 0.00 34.07 2.24
166 167 1.806542 ACGCTGCAAGACCAACATTAG 59.193 47.619 0.00 0.00 34.07 1.73
167 168 1.890876 ACGCTGCAAGACCAACATTA 58.109 45.000 0.00 0.00 34.07 1.90
168 169 1.535462 GTACGCTGCAAGACCAACATT 59.465 47.619 0.00 0.00 34.07 2.71
169 170 1.156736 GTACGCTGCAAGACCAACAT 58.843 50.000 0.00 0.00 34.07 2.71
170 171 0.882927 GGTACGCTGCAAGACCAACA 60.883 55.000 0.00 0.00 34.07 3.33
171 172 0.882927 TGGTACGCTGCAAGACCAAC 60.883 55.000 13.14 0.00 39.01 3.77
172 173 1.448069 TGGTACGCTGCAAGACCAA 59.552 52.632 13.14 0.59 39.01 3.67
173 174 0.882927 GTTGGTACGCTGCAAGACCA 60.883 55.000 11.89 11.89 40.21 4.02
174 175 0.882927 TGTTGGTACGCTGCAAGACC 60.883 55.000 0.00 4.05 34.07 3.85
175 176 1.135972 CATGTTGGTACGCTGCAAGAC 60.136 52.381 0.00 0.00 34.07 3.01
176 177 1.155889 CATGTTGGTACGCTGCAAGA 58.844 50.000 0.00 0.00 34.07 3.02
177 178 0.454957 GCATGTTGGTACGCTGCAAG 60.455 55.000 0.00 0.00 36.26 4.01
178 179 1.578926 GCATGTTGGTACGCTGCAA 59.421 52.632 0.00 0.00 36.26 4.08
179 180 2.331893 GGCATGTTGGTACGCTGCA 61.332 57.895 0.00 0.00 37.31 4.41
180 181 2.485122 GGCATGTTGGTACGCTGC 59.515 61.111 0.00 0.00 35.78 5.25
181 182 1.673993 TGGGCATGTTGGTACGCTG 60.674 57.895 0.00 0.00 0.00 5.18
182 183 1.674322 GTGGGCATGTTGGTACGCT 60.674 57.895 0.00 0.00 0.00 5.07
183 184 2.696759 GGTGGGCATGTTGGTACGC 61.697 63.158 0.00 0.00 0.00 4.42
184 185 0.679640 ATGGTGGGCATGTTGGTACG 60.680 55.000 0.00 0.00 0.00 3.67
185 186 0.817013 CATGGTGGGCATGTTGGTAC 59.183 55.000 0.00 0.00 0.00 3.34
186 187 0.324183 CCATGGTGGGCATGTTGGTA 60.324 55.000 2.57 0.00 32.67 3.25
187 188 1.610086 CCATGGTGGGCATGTTGGT 60.610 57.895 2.57 0.00 32.67 3.67
188 189 1.610086 ACCATGGTGGGCATGTTGG 60.610 57.895 18.99 0.00 43.37 3.77
189 190 1.592743 CACCATGGTGGGCATGTTG 59.407 57.895 33.56 7.88 43.37 3.33
190 191 4.116926 CACCATGGTGGGCATGTT 57.883 55.556 33.56 0.00 43.37 2.71
198 199 2.923121 CTATCCAACTCCACCATGGTG 58.077 52.381 34.08 34.08 45.02 4.17
199 200 1.212935 GCTATCCAACTCCACCATGGT 59.787 52.381 13.00 13.00 39.03 3.55
200 201 1.212688 TGCTATCCAACTCCACCATGG 59.787 52.381 11.19 11.19 39.43 3.66
201 202 2.092753 AGTGCTATCCAACTCCACCATG 60.093 50.000 0.00 0.00 0.00 3.66
202 203 2.092753 CAGTGCTATCCAACTCCACCAT 60.093 50.000 0.00 0.00 0.00 3.55
203 204 1.278985 CAGTGCTATCCAACTCCACCA 59.721 52.381 0.00 0.00 0.00 4.17
204 205 1.555075 TCAGTGCTATCCAACTCCACC 59.445 52.381 0.00 0.00 0.00 4.61
205 206 3.265791 CTTCAGTGCTATCCAACTCCAC 58.734 50.000 0.00 0.00 0.00 4.02
206 207 2.355108 GCTTCAGTGCTATCCAACTCCA 60.355 50.000 0.00 0.00 0.00 3.86
207 208 2.284190 GCTTCAGTGCTATCCAACTCC 58.716 52.381 0.00 0.00 0.00 3.85
208 209 1.929836 CGCTTCAGTGCTATCCAACTC 59.070 52.381 0.00 0.00 0.00 3.01
209 210 1.406069 CCGCTTCAGTGCTATCCAACT 60.406 52.381 0.00 0.00 0.00 3.16
210 211 1.009829 CCGCTTCAGTGCTATCCAAC 58.990 55.000 0.00 0.00 0.00 3.77
211 212 0.613260 ACCGCTTCAGTGCTATCCAA 59.387 50.000 0.00 0.00 0.00 3.53
212 213 0.175760 GACCGCTTCAGTGCTATCCA 59.824 55.000 0.00 0.00 0.00 3.41
213 214 0.461961 AGACCGCTTCAGTGCTATCC 59.538 55.000 0.00 0.00 0.00 2.59
214 215 1.929836 CAAGACCGCTTCAGTGCTATC 59.070 52.381 0.00 0.00 30.14 2.08
215 216 1.550524 TCAAGACCGCTTCAGTGCTAT 59.449 47.619 0.00 0.00 30.14 2.97
216 217 0.966179 TCAAGACCGCTTCAGTGCTA 59.034 50.000 0.00 0.00 30.14 3.49
217 218 0.322975 ATCAAGACCGCTTCAGTGCT 59.677 50.000 0.00 0.00 30.14 4.40
218 219 0.445436 CATCAAGACCGCTTCAGTGC 59.555 55.000 0.00 0.00 30.14 4.40
219 220 1.800805 ACATCAAGACCGCTTCAGTG 58.199 50.000 0.00 0.00 30.14 3.66
220 221 2.146342 CAACATCAAGACCGCTTCAGT 58.854 47.619 0.00 0.00 30.14 3.41
221 222 2.146342 ACAACATCAAGACCGCTTCAG 58.854 47.619 0.00 0.00 30.14 3.02
222 223 2.143122 GACAACATCAAGACCGCTTCA 58.857 47.619 0.00 0.00 30.14 3.02
223 224 2.143122 TGACAACATCAAGACCGCTTC 58.857 47.619 0.00 0.00 33.02 3.86
224 225 2.254546 TGACAACATCAAGACCGCTT 57.745 45.000 0.00 0.00 33.02 4.68
225 226 2.479566 ATGACAACATCAAGACCGCT 57.520 45.000 0.00 0.00 41.93 5.52
235 236 4.602107 TCCATTGACCATGATGACAACAT 58.398 39.130 0.00 0.00 39.67 2.71
236 237 4.031636 TCCATTGACCATGATGACAACA 57.968 40.909 0.00 0.00 34.31 3.33
237 238 4.641541 TGATCCATTGACCATGATGACAAC 59.358 41.667 0.00 0.00 34.31 3.32
238 239 4.641541 GTGATCCATTGACCATGATGACAA 59.358 41.667 0.00 0.74 34.31 3.18
239 240 4.080186 AGTGATCCATTGACCATGATGACA 60.080 41.667 0.00 0.00 34.31 3.58
240 241 4.458397 AGTGATCCATTGACCATGATGAC 58.542 43.478 0.00 0.00 34.31 3.06
241 242 4.711399 GAGTGATCCATTGACCATGATGA 58.289 43.478 0.00 0.00 34.31 2.92
242 243 3.497262 CGAGTGATCCATTGACCATGATG 59.503 47.826 0.00 0.00 34.31 3.07
243 244 3.736720 CGAGTGATCCATTGACCATGAT 58.263 45.455 0.00 0.00 34.31 2.45
244 245 2.742856 GCGAGTGATCCATTGACCATGA 60.743 50.000 0.00 0.00 34.31 3.07
245 246 1.600957 GCGAGTGATCCATTGACCATG 59.399 52.381 0.00 0.00 0.00 3.66
246 247 1.210234 TGCGAGTGATCCATTGACCAT 59.790 47.619 0.00 0.00 0.00 3.55
247 248 0.612744 TGCGAGTGATCCATTGACCA 59.387 50.000 0.00 0.00 0.00 4.02
248 249 1.737838 TTGCGAGTGATCCATTGACC 58.262 50.000 0.00 0.00 0.00 4.02
249 250 2.938451 TGATTGCGAGTGATCCATTGAC 59.062 45.455 0.00 0.00 0.00 3.18
250 251 2.938451 GTGATTGCGAGTGATCCATTGA 59.062 45.455 0.00 0.00 0.00 2.57
251 252 2.286008 CGTGATTGCGAGTGATCCATTG 60.286 50.000 0.00 0.00 0.00 2.82
252 253 1.935873 CGTGATTGCGAGTGATCCATT 59.064 47.619 0.00 0.00 0.00 3.16
253 254 1.134699 ACGTGATTGCGAGTGATCCAT 60.135 47.619 0.00 0.00 35.59 3.41
254 255 0.246360 ACGTGATTGCGAGTGATCCA 59.754 50.000 0.00 0.00 35.59 3.41
255 256 0.647410 CACGTGATTGCGAGTGATCC 59.353 55.000 10.90 0.00 36.79 3.36
256 257 0.025513 GCACGTGATTGCGAGTGATC 59.974 55.000 22.23 0.00 36.79 2.92
257 258 2.081526 GCACGTGATTGCGAGTGAT 58.918 52.632 22.23 0.00 36.79 3.06
258 259 3.549467 GCACGTGATTGCGAGTGA 58.451 55.556 22.23 0.00 36.79 3.41
264 265 1.059369 CACTAGCGCACGTGATTGC 59.941 57.895 22.23 19.02 39.28 3.56
265 266 0.735978 TCCACTAGCGCACGTGATTG 60.736 55.000 22.23 9.20 33.04 2.67
266 267 0.458543 CTCCACTAGCGCACGTGATT 60.459 55.000 22.23 5.90 33.04 2.57
267 268 1.139734 CTCCACTAGCGCACGTGAT 59.860 57.895 22.23 6.67 33.04 3.06
268 269 2.566529 CTCCACTAGCGCACGTGA 59.433 61.111 22.23 13.06 33.04 4.35
269 270 2.507102 CCTCCACTAGCGCACGTG 60.507 66.667 12.28 12.28 0.00 4.49
270 271 2.675423 TCCTCCACTAGCGCACGT 60.675 61.111 11.47 2.23 0.00 4.49
271 272 1.729470 ATCTCCTCCACTAGCGCACG 61.729 60.000 11.47 1.43 0.00 5.34
272 273 1.001158 GTATCTCCTCCACTAGCGCAC 60.001 57.143 11.47 0.00 0.00 5.34
273 274 1.319541 GTATCTCCTCCACTAGCGCA 58.680 55.000 11.47 0.00 0.00 6.09
274 275 0.238817 CGTATCTCCTCCACTAGCGC 59.761 60.000 0.00 0.00 0.00 5.92
275 276 0.238817 GCGTATCTCCTCCACTAGCG 59.761 60.000 0.00 0.00 0.00 4.26
276 277 1.319541 TGCGTATCTCCTCCACTAGC 58.680 55.000 0.00 0.00 0.00 3.42
277 278 3.149981 TCATGCGTATCTCCTCCACTAG 58.850 50.000 0.00 0.00 0.00 2.57
278 279 3.223674 TCATGCGTATCTCCTCCACTA 57.776 47.619 0.00 0.00 0.00 2.74
279 280 2.073252 TCATGCGTATCTCCTCCACT 57.927 50.000 0.00 0.00 0.00 4.00
280 281 2.297315 TGATCATGCGTATCTCCTCCAC 59.703 50.000 0.00 0.00 0.00 4.02
281 282 2.560105 CTGATCATGCGTATCTCCTCCA 59.440 50.000 0.00 0.00 0.00 3.86
282 283 2.560542 ACTGATCATGCGTATCTCCTCC 59.439 50.000 0.00 0.00 0.00 4.30
283 284 3.932545 ACTGATCATGCGTATCTCCTC 57.067 47.619 0.00 0.00 0.00 3.71
284 285 3.192422 GCTACTGATCATGCGTATCTCCT 59.808 47.826 0.00 0.00 0.00 3.69
285 286 3.057245 TGCTACTGATCATGCGTATCTCC 60.057 47.826 0.00 0.00 0.00 3.71
286 287 4.166187 TGCTACTGATCATGCGTATCTC 57.834 45.455 0.00 0.00 0.00 2.75
287 288 4.590850 TTGCTACTGATCATGCGTATCT 57.409 40.909 0.00 0.00 0.00 1.98
288 289 5.406477 TCATTTGCTACTGATCATGCGTATC 59.594 40.000 0.00 0.00 0.00 2.24
289 290 5.299949 TCATTTGCTACTGATCATGCGTAT 58.700 37.500 0.00 0.00 0.00 3.06
290 291 4.692228 TCATTTGCTACTGATCATGCGTA 58.308 39.130 0.00 0.00 0.00 4.42
291 292 3.534554 TCATTTGCTACTGATCATGCGT 58.465 40.909 0.00 0.00 0.00 5.24
292 293 4.541085 TTCATTTGCTACTGATCATGCG 57.459 40.909 0.00 0.00 0.00 4.73
293 294 6.068473 TGATTCATTTGCTACTGATCATGC 57.932 37.500 0.00 2.11 0.00 4.06
294 295 7.139392 CCTTGATTCATTTGCTACTGATCATG 58.861 38.462 0.00 0.00 0.00 3.07
295 296 6.264744 CCCTTGATTCATTTGCTACTGATCAT 59.735 38.462 0.00 0.00 0.00 2.45
296 297 5.591472 CCCTTGATTCATTTGCTACTGATCA 59.409 40.000 0.00 0.00 0.00 2.92
297 298 5.824624 TCCCTTGATTCATTTGCTACTGATC 59.175 40.000 0.00 0.00 0.00 2.92
298 299 5.759059 TCCCTTGATTCATTTGCTACTGAT 58.241 37.500 0.00 0.00 0.00 2.90
299 300 5.045651 TCTCCCTTGATTCATTTGCTACTGA 60.046 40.000 0.00 0.00 0.00 3.41
300 301 5.188434 TCTCCCTTGATTCATTTGCTACTG 58.812 41.667 0.00 0.00 0.00 2.74
301 302 5.441718 TCTCCCTTGATTCATTTGCTACT 57.558 39.130 0.00 0.00 0.00 2.57
302 303 6.705863 AATCTCCCTTGATTCATTTGCTAC 57.294 37.500 0.00 0.00 31.72 3.58
303 304 6.891361 TGAAATCTCCCTTGATTCATTTGCTA 59.109 34.615 0.00 0.00 35.82 3.49
304 305 5.718130 TGAAATCTCCCTTGATTCATTTGCT 59.282 36.000 0.00 0.00 35.82 3.91
305 306 5.969423 TGAAATCTCCCTTGATTCATTTGC 58.031 37.500 0.00 0.00 35.82 3.68
306 307 9.444600 AAAATGAAATCTCCCTTGATTCATTTG 57.555 29.630 19.48 0.00 39.85 2.32
307 308 9.662947 GAAAATGAAATCTCCCTTGATTCATTT 57.337 29.630 15.29 15.29 40.53 2.32
308 309 9.043548 AGAAAATGAAATCTCCCTTGATTCATT 57.956 29.630 6.29 6.29 36.69 2.57
309 310 8.605325 AGAAAATGAAATCTCCCTTGATTCAT 57.395 30.769 0.00 0.00 35.82 2.57
310 311 7.670979 TGAGAAAATGAAATCTCCCTTGATTCA 59.329 33.333 0.00 0.00 41.10 2.57
311 312 8.059798 TGAGAAAATGAAATCTCCCTTGATTC 57.940 34.615 0.00 0.00 41.10 2.52
312 313 8.605325 ATGAGAAAATGAAATCTCCCTTGATT 57.395 30.769 0.00 0.00 41.10 2.57
313 314 9.878737 ATATGAGAAAATGAAATCTCCCTTGAT 57.121 29.630 0.00 0.00 41.10 2.57
314 315 9.705103 AATATGAGAAAATGAAATCTCCCTTGA 57.295 29.630 0.00 0.00 41.10 3.02
317 318 9.705103 TCAAATATGAGAAAATGAAATCTCCCT 57.295 29.630 0.00 0.00 41.10 4.20
318 319 9.741647 GTCAAATATGAGAAAATGAAATCTCCC 57.258 33.333 0.00 0.00 41.10 4.30
406 407 2.606795 CGTAAAAGCCAACCCATGTGTG 60.607 50.000 0.00 0.00 0.00 3.82
412 413 3.223435 TGAATTCGTAAAAGCCAACCCA 58.777 40.909 0.04 0.00 0.00 4.51
413 414 3.926821 TGAATTCGTAAAAGCCAACCC 57.073 42.857 0.04 0.00 0.00 4.11
416 417 3.564644 TCGGTTGAATTCGTAAAAGCCAA 59.435 39.130 0.04 0.00 0.00 4.52
420 421 4.378046 CCCAGTCGGTTGAATTCGTAAAAG 60.378 45.833 0.04 0.00 0.00 2.27
803 804 2.269241 GAGGCTTGTCCCCCTTCG 59.731 66.667 0.00 0.00 34.51 3.79
809 810 1.377856 GCTCAAGGAGGCTTGTCCC 60.378 63.158 0.00 0.00 37.31 4.46
813 814 3.272574 TCATTAGCTCAAGGAGGCTTG 57.727 47.619 0.00 0.00 39.65 4.01
827 828 5.136105 CAGGGGGAAGGAAGATTTCATTAG 58.864 45.833 0.00 0.00 33.28 1.73
936 1371 7.549134 GTCAGGTGTCCAAAAAGAAAAGAAAAT 59.451 33.333 0.00 0.00 0.00 1.82
944 1379 2.680841 CGTGTCAGGTGTCCAAAAAGAA 59.319 45.455 0.00 0.00 0.00 2.52
1027 1488 0.613260 ATCGAGCAAACCCTACAGCA 59.387 50.000 0.00 0.00 0.00 4.41
1341 1845 5.444663 AAAGAACAAGCAAGGATGAAGAC 57.555 39.130 0.00 0.00 0.00 3.01
1551 3487 7.234577 AGTTAATTTCAGGTTTAGCCAAATCCA 59.765 33.333 0.00 0.00 40.61 3.41
1621 3559 9.189156 CCATCTAATTTTCCTATTTCACTTCCA 57.811 33.333 0.00 0.00 0.00 3.53
1638 3585 5.191722 TCCCACTGAGTTAAGCCATCTAATT 59.808 40.000 0.00 0.00 0.00 1.40
1648 3597 5.126061 CCCATTTCAATCCCACTGAGTTAAG 59.874 44.000 0.00 0.00 0.00 1.85
1724 3675 8.122330 CAGACGCTGCAATGAATAAGTAAAATA 58.878 33.333 0.00 0.00 0.00 1.40
1725 3676 6.968904 CAGACGCTGCAATGAATAAGTAAAAT 59.031 34.615 0.00 0.00 0.00 1.82
1730 3682 3.338249 ACAGACGCTGCAATGAATAAGT 58.662 40.909 0.00 0.00 34.37 2.24
1778 3731 3.635591 AGCCCAAATTCATCTTGGTAGG 58.364 45.455 1.23 0.00 41.60 3.18
1878 3831 2.097142 GTCAATGCTGTCTCTGGCAATC 59.903 50.000 0.00 0.00 41.90 2.67
1940 3893 2.149803 TACCTCGTTGACACGCTGGG 62.150 60.000 10.01 0.00 46.70 4.45
2150 4133 3.697045 AGAATCACACGAGAGGTTAGAGG 59.303 47.826 0.00 0.00 0.00 3.69
2248 4231 7.285566 TCCATCTTCCCTGATTTTAAGATCTG 58.714 38.462 7.44 6.70 36.73 2.90
2387 4373 1.126846 GTTGCGAATCTCACTTCCGTG 59.873 52.381 0.00 0.00 42.59 4.94
2625 4611 9.125026 AGCCTTATTATTAATCTGAAACACCAG 57.875 33.333 0.00 0.00 35.55 4.00
2639 4625 4.788925 ACCACCAGCAGCCTTATTATTA 57.211 40.909 0.00 0.00 0.00 0.98
2722 4723 2.223711 CCAAACTTTACAGCACCACACC 60.224 50.000 0.00 0.00 0.00 4.16
2837 4901 3.198635 TCTGATTCCTAGTGCTTCCCTTG 59.801 47.826 0.00 0.00 0.00 3.61
2939 5088 0.463620 TTTTGGAAACTGCCCAGCAC 59.536 50.000 0.00 0.00 34.77 4.40
2965 5127 6.263168 CCAAGCAGTTATTCCGATATTTTCCT 59.737 38.462 0.00 0.00 0.00 3.36
2966 5128 6.262273 TCCAAGCAGTTATTCCGATATTTTCC 59.738 38.462 0.00 0.00 0.00 3.13
2967 5129 7.259290 TCCAAGCAGTTATTCCGATATTTTC 57.741 36.000 0.00 0.00 0.00 2.29
2970 5132 9.520515 AAATATCCAAGCAGTTATTCCGATATT 57.479 29.630 0.00 0.00 34.66 1.28
2973 5446 7.607991 CCTAAATATCCAAGCAGTTATTCCGAT 59.392 37.037 0.00 0.00 0.00 4.18
2977 5450 9.952188 GTTTCCTAAATATCCAAGCAGTTATTC 57.048 33.333 0.00 0.00 0.00 1.75
3018 5520 8.726988 TCCGAAATTGGTTAGCTAAATATATGC 58.273 33.333 7.99 0.00 0.00 3.14
3270 6460 6.810182 AGTATCTGATGCTTTTGAAACAATGC 59.190 34.615 2.15 0.00 0.00 3.56
3781 8315 5.587844 ACAGAAGCAAATCCTGATATCACAC 59.412 40.000 0.00 0.00 0.00 3.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.