Multiple sequence alignment - TraesCS1A01G042000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G042000 chr1A 100.000 2549 0 0 1 2549 22790957 22793505 0.000000e+00 4708.0
1 TraesCS1A01G042000 chr1A 92.033 364 22 3 1 360 13212731 13212371 2.930000e-139 505.0
2 TraesCS1A01G042000 chr1A 82.789 337 51 4 2 334 13229314 13228981 6.900000e-76 294.0
3 TraesCS1A01G042000 chr1A 82.267 344 56 4 11 354 13267113 13266775 2.480000e-75 292.0
4 TraesCS1A01G042000 chr1A 86.792 212 28 0 3 214 13006137 13006348 1.180000e-58 237.0
5 TraesCS1A01G042000 chr1A 100.000 28 0 0 319 346 13212381 13212354 5.000000e-03 52.8
6 TraesCS1A01G042000 chr6A 99.187 1968 14 2 572 2537 617222870 617220903 0.000000e+00 3544.0
7 TraesCS1A01G042000 chr6B 98.889 1980 19 3 572 2549 660437744 660435766 0.000000e+00 3531.0
8 TraesCS1A01G042000 chr7A 98.641 1987 23 4 567 2549 701581934 701583920 0.000000e+00 3517.0
9 TraesCS1A01G042000 chr3B 98.687 1980 23 3 572 2549 379294092 379296070 0.000000e+00 3509.0
10 TraesCS1A01G042000 chr7B 98.587 1981 24 3 573 2549 552932143 552930163 0.000000e+00 3500.0
11 TraesCS1A01G042000 chr7B 98.585 1979 25 3 573 2549 692881452 692883429 0.000000e+00 3496.0
12 TraesCS1A01G042000 chr5A 98.441 1989 27 4 565 2549 459744871 459746859 0.000000e+00 3498.0
13 TraesCS1A01G042000 chr5B 98.535 1979 27 2 573 2549 206051425 206049447 0.000000e+00 3493.0
14 TraesCS1A01G042000 chr3A 98.485 1980 27 2 573 2549 722406047 722404068 0.000000e+00 3487.0
15 TraesCS1A01G042000 chr1B 93.525 417 19 4 2 414 39806453 39806041 4.660000e-172 614.0
16 TraesCS1A01G042000 chr1B 92.677 396 22 2 2 390 16225371 16225766 4.760000e-157 564.0
17 TraesCS1A01G042000 chr1B 92.541 362 21 2 2 360 23597752 23597394 4.860000e-142 514.0
18 TraesCS1A01G042000 chr1B 92.541 362 21 2 2 360 23896528 23896170 4.860000e-142 514.0
19 TraesCS1A01G042000 chr1D 92.079 404 16 7 3 390 10844122 10843719 2.870000e-154 555.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G042000 chr1A 22790957 22793505 2548 False 4708 4708 100.000 1 2549 1 chr1A.!!$F2 2548
1 TraesCS1A01G042000 chr6A 617220903 617222870 1967 True 3544 3544 99.187 572 2537 1 chr6A.!!$R1 1965
2 TraesCS1A01G042000 chr6B 660435766 660437744 1978 True 3531 3531 98.889 572 2549 1 chr6B.!!$R1 1977
3 TraesCS1A01G042000 chr7A 701581934 701583920 1986 False 3517 3517 98.641 567 2549 1 chr7A.!!$F1 1982
4 TraesCS1A01G042000 chr3B 379294092 379296070 1978 False 3509 3509 98.687 572 2549 1 chr3B.!!$F1 1977
5 TraesCS1A01G042000 chr7B 552930163 552932143 1980 True 3500 3500 98.587 573 2549 1 chr7B.!!$R1 1976
6 TraesCS1A01G042000 chr7B 692881452 692883429 1977 False 3496 3496 98.585 573 2549 1 chr7B.!!$F1 1976
7 TraesCS1A01G042000 chr5A 459744871 459746859 1988 False 3498 3498 98.441 565 2549 1 chr5A.!!$F1 1984
8 TraesCS1A01G042000 chr5B 206049447 206051425 1978 True 3493 3493 98.535 573 2549 1 chr5B.!!$R1 1976
9 TraesCS1A01G042000 chr3A 722404068 722406047 1979 True 3487 3487 98.485 573 2549 1 chr3A.!!$R1 1976

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
149 150 0.036858 GCTTCTTCGCCAGTTCTCCT 60.037 55.0 0.0 0.0 0.0 3.69 F
205 206 0.041982 ACCTCTCCTTCTCCTCCACC 59.958 60.0 0.0 0.0 0.0 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1152 1155 2.438021 CCCGATTCTTACCCCATTCTCA 59.562 50.000 0.00 0.0 0.00 3.27 R
2160 2167 3.003763 GGGTTCGAGTCCCCAGCT 61.004 66.667 14.49 0.0 40.88 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.267121 TGAGAGGCCACTTACACTCC 58.733 55.000 5.01 0.00 0.00 3.85
20 21 1.203187 TGAGAGGCCACTTACACTCCT 60.203 52.381 5.01 0.00 0.00 3.69
21 22 1.478916 GAGAGGCCACTTACACTCCTC 59.521 57.143 5.01 0.00 42.68 3.71
22 23 0.173708 GAGGCCACTTACACTCCTCG 59.826 60.000 5.01 0.00 34.67 4.63
23 24 0.542232 AGGCCACTTACACTCCTCGT 60.542 55.000 5.01 0.00 0.00 4.18
24 25 0.108756 GGCCACTTACACTCCTCGTC 60.109 60.000 0.00 0.00 0.00 4.20
25 26 0.456312 GCCACTTACACTCCTCGTCG 60.456 60.000 0.00 0.00 0.00 5.12
26 27 1.162698 CCACTTACACTCCTCGTCGA 58.837 55.000 0.00 0.00 0.00 4.20
27 28 1.743958 CCACTTACACTCCTCGTCGAT 59.256 52.381 0.00 0.00 0.00 3.59
28 29 2.478031 CCACTTACACTCCTCGTCGATG 60.478 54.545 0.00 0.00 0.00 3.84
29 30 2.161808 CACTTACACTCCTCGTCGATGT 59.838 50.000 4.21 0.00 0.00 3.06
30 31 2.818432 ACTTACACTCCTCGTCGATGTT 59.182 45.455 4.21 0.00 0.00 2.71
31 32 2.913777 TACACTCCTCGTCGATGTTG 57.086 50.000 4.21 3.26 0.00 3.33
32 33 1.244816 ACACTCCTCGTCGATGTTGA 58.755 50.000 4.21 1.91 0.00 3.18
33 34 1.611977 ACACTCCTCGTCGATGTTGAA 59.388 47.619 4.21 0.00 0.00 2.69
34 35 2.254459 CACTCCTCGTCGATGTTGAAG 58.746 52.381 4.21 1.62 0.00 3.02
35 36 2.095212 CACTCCTCGTCGATGTTGAAGA 60.095 50.000 4.21 0.00 0.00 2.87
36 37 2.095161 ACTCCTCGTCGATGTTGAAGAC 60.095 50.000 4.21 0.00 0.00 3.01
41 42 2.631418 GTCGATGTTGAAGACGGAGA 57.369 50.000 0.00 0.00 0.00 3.71
42 43 2.942710 GTCGATGTTGAAGACGGAGAA 58.057 47.619 0.00 0.00 0.00 2.87
43 44 2.917971 GTCGATGTTGAAGACGGAGAAG 59.082 50.000 0.00 0.00 0.00 2.85
44 45 2.557056 TCGATGTTGAAGACGGAGAAGT 59.443 45.455 0.00 0.00 0.00 3.01
45 46 2.917971 CGATGTTGAAGACGGAGAAGTC 59.082 50.000 0.00 0.00 41.23 3.01
59 60 4.320023 GGAGAAGTCTCTGAGGAAAAACC 58.680 47.826 4.59 0.00 42.48 3.27
60 61 3.991121 GAGAAGTCTCTGAGGAAAAACCG 59.009 47.826 4.59 0.00 40.66 4.44
61 62 2.841442 AGTCTCTGAGGAAAAACCGG 57.159 50.000 0.00 0.00 44.74 5.28
62 63 1.348036 AGTCTCTGAGGAAAAACCGGG 59.652 52.381 6.32 0.00 44.74 5.73
63 64 1.071857 GTCTCTGAGGAAAAACCGGGT 59.928 52.381 6.32 0.00 44.74 5.28
64 65 1.071699 TCTCTGAGGAAAAACCGGGTG 59.928 52.381 6.32 0.00 44.74 4.61
65 66 0.841289 TCTGAGGAAAAACCGGGTGT 59.159 50.000 6.32 0.00 44.74 4.16
66 67 2.038033 CTCTGAGGAAAAACCGGGTGTA 59.962 50.000 6.32 0.00 44.74 2.90
67 68 2.038033 TCTGAGGAAAAACCGGGTGTAG 59.962 50.000 6.32 0.00 44.74 2.74
68 69 2.038033 CTGAGGAAAAACCGGGTGTAGA 59.962 50.000 6.32 0.00 44.74 2.59
69 70 2.224354 TGAGGAAAAACCGGGTGTAGAC 60.224 50.000 6.32 0.00 44.74 2.59
70 71 1.072806 AGGAAAAACCGGGTGTAGACC 59.927 52.381 6.32 0.00 44.74 3.85
71 72 1.072806 GGAAAAACCGGGTGTAGACCT 59.927 52.381 6.32 0.00 42.66 3.85
72 73 2.487805 GGAAAAACCGGGTGTAGACCTT 60.488 50.000 6.32 0.00 42.66 3.50
73 74 2.265589 AAAACCGGGTGTAGACCTTG 57.734 50.000 6.32 3.06 42.66 3.61
74 75 0.250597 AAACCGGGTGTAGACCTTGC 60.251 55.000 6.32 0.00 42.66 4.01
75 76 2.125673 CCGGGTGTAGACCTTGCG 60.126 66.667 9.23 4.16 42.66 4.85
76 77 2.813908 CGGGTGTAGACCTTGCGC 60.814 66.667 9.23 0.00 42.66 6.09
77 78 2.436115 GGGTGTAGACCTTGCGCC 60.436 66.667 9.23 0.00 42.66 6.53
78 79 2.436115 GGTGTAGACCTTGCGCCC 60.436 66.667 4.18 0.00 39.47 6.13
79 80 2.345991 GTGTAGACCTTGCGCCCA 59.654 61.111 4.18 0.00 0.00 5.36
80 81 1.741770 GTGTAGACCTTGCGCCCAG 60.742 63.158 4.18 0.00 0.00 4.45
94 95 2.825836 CCAGCCTTGGGATCGTGC 60.826 66.667 0.00 0.00 41.05 5.34
95 96 2.270205 CAGCCTTGGGATCGTGCT 59.730 61.111 0.00 0.00 0.00 4.40
96 97 2.110967 CAGCCTTGGGATCGTGCTG 61.111 63.158 0.00 0.00 42.85 4.41
97 98 2.825836 GCCTTGGGATCGTGCTGG 60.826 66.667 0.00 0.00 0.00 4.85
98 99 2.989639 CCTTGGGATCGTGCTGGA 59.010 61.111 0.00 0.00 0.00 3.86
99 100 1.528824 CCTTGGGATCGTGCTGGAT 59.471 57.895 0.00 0.00 0.00 3.41
100 101 0.816825 CCTTGGGATCGTGCTGGATG 60.817 60.000 0.00 0.00 0.00 3.51
101 102 0.178767 CTTGGGATCGTGCTGGATGA 59.821 55.000 0.00 0.00 0.00 2.92
102 103 0.839277 TTGGGATCGTGCTGGATGAT 59.161 50.000 3.34 3.34 32.53 2.45
103 104 0.107268 TGGGATCGTGCTGGATGATG 59.893 55.000 8.70 0.00 29.73 3.07
104 105 0.604780 GGGATCGTGCTGGATGATGG 60.605 60.000 8.70 0.00 29.73 3.51
105 106 0.394192 GGATCGTGCTGGATGATGGA 59.606 55.000 8.70 0.00 29.73 3.41
106 107 1.607509 GGATCGTGCTGGATGATGGAG 60.608 57.143 8.70 0.00 29.73 3.86
107 108 1.069823 GATCGTGCTGGATGATGGAGT 59.930 52.381 8.70 0.00 29.73 3.85
108 109 0.461548 TCGTGCTGGATGATGGAGTC 59.538 55.000 0.00 0.00 0.00 3.36
109 110 0.531532 CGTGCTGGATGATGGAGTCC 60.532 60.000 0.73 0.73 35.02 3.85
110 111 0.543277 GTGCTGGATGATGGAGTCCA 59.457 55.000 15.88 15.88 42.03 4.02
112 113 1.142262 TGCTGGATGATGGAGTCCATG 59.858 52.381 29.60 14.36 45.26 3.66
113 114 1.419012 GCTGGATGATGGAGTCCATGA 59.581 52.381 29.60 21.99 45.26 3.07
114 115 2.809665 GCTGGATGATGGAGTCCATGAC 60.810 54.545 29.60 15.99 45.26 3.06
115 116 1.770658 TGGATGATGGAGTCCATGACC 59.229 52.381 29.60 24.94 45.26 4.02
116 117 2.053244 GGATGATGGAGTCCATGACCT 58.947 52.381 29.60 6.93 45.26 3.85
117 118 2.441001 GGATGATGGAGTCCATGACCTT 59.559 50.000 29.60 12.76 45.26 3.50
118 119 3.495806 GGATGATGGAGTCCATGACCTTC 60.496 52.174 29.60 19.52 45.26 3.46
119 120 2.837947 TGATGGAGTCCATGACCTTCT 58.162 47.619 29.60 2.95 45.26 2.85
120 121 2.768527 TGATGGAGTCCATGACCTTCTC 59.231 50.000 29.60 13.38 45.26 2.87
121 122 2.325661 TGGAGTCCATGACCTTCTCA 57.674 50.000 8.12 0.00 32.18 3.27
122 123 2.837947 TGGAGTCCATGACCTTCTCAT 58.162 47.619 8.12 0.00 40.59 2.90
129 130 2.706339 ATGACCTTCTCATGTGCCTC 57.294 50.000 0.00 0.00 38.28 4.70
130 131 0.247460 TGACCTTCTCATGTGCCTCG 59.753 55.000 0.00 0.00 0.00 4.63
131 132 1.078848 ACCTTCTCATGTGCCTCGC 60.079 57.895 0.00 0.00 0.00 5.03
132 133 1.220206 CCTTCTCATGTGCCTCGCT 59.780 57.895 0.00 0.00 0.00 4.93
133 134 0.392193 CCTTCTCATGTGCCTCGCTT 60.392 55.000 0.00 0.00 0.00 4.68
134 135 1.005340 CTTCTCATGTGCCTCGCTTC 58.995 55.000 0.00 0.00 0.00 3.86
135 136 0.610174 TTCTCATGTGCCTCGCTTCT 59.390 50.000 0.00 0.00 0.00 2.85
136 137 0.610174 TCTCATGTGCCTCGCTTCTT 59.390 50.000 0.00 0.00 0.00 2.52
137 138 1.005340 CTCATGTGCCTCGCTTCTTC 58.995 55.000 0.00 0.00 0.00 2.87
138 139 0.737367 TCATGTGCCTCGCTTCTTCG 60.737 55.000 0.00 0.00 0.00 3.79
139 140 2.103042 ATGTGCCTCGCTTCTTCGC 61.103 57.895 0.00 0.00 0.00 4.70
140 141 3.491652 GTGCCTCGCTTCTTCGCC 61.492 66.667 0.00 0.00 0.00 5.54
141 142 4.002506 TGCCTCGCTTCTTCGCCA 62.003 61.111 0.00 0.00 0.00 5.69
142 143 3.191539 GCCTCGCTTCTTCGCCAG 61.192 66.667 0.00 0.00 0.00 4.85
143 144 2.262915 CCTCGCTTCTTCGCCAGT 59.737 61.111 0.00 0.00 0.00 4.00
144 145 1.374758 CCTCGCTTCTTCGCCAGTT 60.375 57.895 0.00 0.00 0.00 3.16
145 146 1.355066 CCTCGCTTCTTCGCCAGTTC 61.355 60.000 0.00 0.00 0.00 3.01
146 147 0.389166 CTCGCTTCTTCGCCAGTTCT 60.389 55.000 0.00 0.00 0.00 3.01
147 148 0.388649 TCGCTTCTTCGCCAGTTCTC 60.389 55.000 0.00 0.00 0.00 2.87
148 149 1.355066 CGCTTCTTCGCCAGTTCTCC 61.355 60.000 0.00 0.00 0.00 3.71
149 150 0.036858 GCTTCTTCGCCAGTTCTCCT 60.037 55.000 0.00 0.00 0.00 3.69
150 151 2.003196 CTTCTTCGCCAGTTCTCCTC 57.997 55.000 0.00 0.00 0.00 3.71
151 152 0.608640 TTCTTCGCCAGTTCTCCTCC 59.391 55.000 0.00 0.00 0.00 4.30
152 153 1.219393 CTTCGCCAGTTCTCCTCCC 59.781 63.158 0.00 0.00 0.00 4.30
153 154 2.564553 CTTCGCCAGTTCTCCTCCCG 62.565 65.000 0.00 0.00 0.00 5.14
154 155 4.821589 CGCCAGTTCTCCTCCCGC 62.822 72.222 0.00 0.00 0.00 6.13
155 156 3.394836 GCCAGTTCTCCTCCCGCT 61.395 66.667 0.00 0.00 0.00 5.52
156 157 2.960688 GCCAGTTCTCCTCCCGCTT 61.961 63.158 0.00 0.00 0.00 4.68
157 158 1.219393 CCAGTTCTCCTCCCGCTTC 59.781 63.158 0.00 0.00 0.00 3.86
158 159 1.219393 CAGTTCTCCTCCCGCTTCC 59.781 63.158 0.00 0.00 0.00 3.46
159 160 2.184579 GTTCTCCTCCCGCTTCCG 59.815 66.667 0.00 0.00 0.00 4.30
160 161 2.036731 TTCTCCTCCCGCTTCCGA 59.963 61.111 0.00 0.00 36.29 4.55
161 162 2.052690 TTCTCCTCCCGCTTCCGAG 61.053 63.158 0.00 0.00 36.29 4.63
162 163 2.756283 CTCCTCCCGCTTCCGAGT 60.756 66.667 0.00 0.00 36.29 4.18
163 164 2.754658 TCCTCCCGCTTCCGAGTC 60.755 66.667 0.00 0.00 36.29 3.36
164 165 2.756283 CCTCCCGCTTCCGAGTCT 60.756 66.667 0.00 0.00 36.29 3.24
165 166 2.352032 CCTCCCGCTTCCGAGTCTT 61.352 63.158 0.00 0.00 36.29 3.01
166 167 1.139947 CTCCCGCTTCCGAGTCTTC 59.860 63.158 0.00 0.00 36.29 2.87
167 168 1.304217 TCCCGCTTCCGAGTCTTCT 60.304 57.895 0.00 0.00 36.29 2.85
168 169 1.139947 CCCGCTTCCGAGTCTTCTC 59.860 63.158 0.00 0.00 36.29 2.87
169 170 1.139947 CCGCTTCCGAGTCTTCTCC 59.860 63.158 0.00 0.00 37.40 3.71
170 171 1.316706 CCGCTTCCGAGTCTTCTCCT 61.317 60.000 0.00 0.00 37.40 3.69
171 172 0.099791 CGCTTCCGAGTCTTCTCCTC 59.900 60.000 0.00 0.00 37.40 3.71
172 173 1.470051 GCTTCCGAGTCTTCTCCTCT 58.530 55.000 0.00 0.00 37.40 3.69
173 174 1.822371 GCTTCCGAGTCTTCTCCTCTT 59.178 52.381 0.00 0.00 37.40 2.85
174 175 2.159296 GCTTCCGAGTCTTCTCCTCTTC 60.159 54.545 0.00 0.00 37.40 2.87
175 176 2.131776 TCCGAGTCTTCTCCTCTTCC 57.868 55.000 0.00 0.00 37.40 3.46
176 177 1.636519 TCCGAGTCTTCTCCTCTTCCT 59.363 52.381 0.00 0.00 37.40 3.36
177 178 2.021457 CCGAGTCTTCTCCTCTTCCTC 58.979 57.143 0.00 0.00 37.40 3.71
178 179 2.021457 CGAGTCTTCTCCTCTTCCTCC 58.979 57.143 0.00 0.00 37.40 4.30
179 180 2.384828 GAGTCTTCTCCTCTTCCTCCC 58.615 57.143 0.00 0.00 34.87 4.30
180 181 1.107945 GTCTTCTCCTCTTCCTCCCG 58.892 60.000 0.00 0.00 0.00 5.14
181 182 0.705253 TCTTCTCCTCTTCCTCCCGT 59.295 55.000 0.00 0.00 0.00 5.28
182 183 1.107945 CTTCTCCTCTTCCTCCCGTC 58.892 60.000 0.00 0.00 0.00 4.79
183 184 0.680280 TTCTCCTCTTCCTCCCGTCG 60.680 60.000 0.00 0.00 0.00 5.12
184 185 2.044252 TCCTCTTCCTCCCGTCGG 60.044 66.667 3.60 3.60 0.00 4.79
185 186 3.148279 CCTCTTCCTCCCGTCGGG 61.148 72.222 25.31 25.31 46.11 5.14
187 188 2.362120 TCTTCCTCCCGTCGGGAC 60.362 66.667 29.57 0.00 46.17 4.46
188 189 3.459063 CTTCCTCCCGTCGGGACC 61.459 72.222 29.57 0.00 46.17 4.46
189 190 3.959329 CTTCCTCCCGTCGGGACCT 62.959 68.421 29.57 0.00 46.17 3.85
190 191 3.951769 TTCCTCCCGTCGGGACCTC 62.952 68.421 29.57 0.00 46.17 3.85
191 192 4.444081 CCTCCCGTCGGGACCTCT 62.444 72.222 29.57 0.00 46.17 3.69
192 193 2.829458 CTCCCGTCGGGACCTCTC 60.829 72.222 29.57 0.00 46.17 3.20
193 194 4.437587 TCCCGTCGGGACCTCTCC 62.438 72.222 29.57 0.00 46.17 3.71
195 196 2.362632 CCGTCGGGACCTCTCCTT 60.363 66.667 2.34 0.00 36.68 3.36
196 197 2.416432 CCGTCGGGACCTCTCCTTC 61.416 68.421 2.34 0.00 36.68 3.46
197 198 1.378778 CGTCGGGACCTCTCCTTCT 60.379 63.158 0.00 0.00 36.68 2.85
198 199 1.378124 CGTCGGGACCTCTCCTTCTC 61.378 65.000 0.00 0.00 36.68 2.87
199 200 1.038681 GTCGGGACCTCTCCTTCTCC 61.039 65.000 0.00 0.00 36.68 3.71
200 201 1.215679 TCGGGACCTCTCCTTCTCCT 61.216 60.000 0.00 0.00 36.68 3.69
201 202 0.753848 CGGGACCTCTCCTTCTCCTC 60.754 65.000 0.00 0.00 36.68 3.71
202 203 0.397957 GGGACCTCTCCTTCTCCTCC 60.398 65.000 0.00 0.00 36.68 4.30
203 204 0.336737 GGACCTCTCCTTCTCCTCCA 59.663 60.000 0.00 0.00 33.07 3.86
204 205 1.480789 GACCTCTCCTTCTCCTCCAC 58.519 60.000 0.00 0.00 0.00 4.02
205 206 0.041982 ACCTCTCCTTCTCCTCCACC 59.958 60.000 0.00 0.00 0.00 4.61
206 207 1.040339 CCTCTCCTTCTCCTCCACCG 61.040 65.000 0.00 0.00 0.00 4.94
207 208 1.671901 CTCTCCTTCTCCTCCACCGC 61.672 65.000 0.00 0.00 0.00 5.68
208 209 2.683933 TCCTTCTCCTCCACCGCC 60.684 66.667 0.00 0.00 0.00 6.13
209 210 3.787001 CCTTCTCCTCCACCGCCC 61.787 72.222 0.00 0.00 0.00 6.13
210 211 3.003173 CTTCTCCTCCACCGCCCA 61.003 66.667 0.00 0.00 0.00 5.36
211 212 3.003173 TTCTCCTCCACCGCCCAG 61.003 66.667 0.00 0.00 0.00 4.45
224 225 4.722700 CCCAGGCCACCCACTTCG 62.723 72.222 5.01 0.00 0.00 3.79
234 235 3.751246 CCACTTCGCCCGGTCGTA 61.751 66.667 4.19 0.00 0.00 3.43
235 236 2.505557 CACTTCGCCCGGTCGTAC 60.506 66.667 4.19 0.00 0.00 3.67
236 237 2.985282 ACTTCGCCCGGTCGTACA 60.985 61.111 4.19 0.00 0.00 2.90
237 238 2.259204 CTTCGCCCGGTCGTACAA 59.741 61.111 4.19 0.00 0.00 2.41
238 239 1.153706 CTTCGCCCGGTCGTACAAT 60.154 57.895 4.19 0.00 0.00 2.71
239 240 0.101040 CTTCGCCCGGTCGTACAATA 59.899 55.000 4.19 0.00 0.00 1.90
240 241 0.529833 TTCGCCCGGTCGTACAATAA 59.470 50.000 4.19 0.00 0.00 1.40
241 242 0.529833 TCGCCCGGTCGTACAATAAA 59.470 50.000 4.19 0.00 0.00 1.40
242 243 0.925466 CGCCCGGTCGTACAATAAAG 59.075 55.000 0.00 0.00 0.00 1.85
243 244 1.292992 GCCCGGTCGTACAATAAAGG 58.707 55.000 0.00 0.00 0.00 3.11
244 245 1.292992 CCCGGTCGTACAATAAAGGC 58.707 55.000 0.00 0.00 0.00 4.35
245 246 1.134610 CCCGGTCGTACAATAAAGGCT 60.135 52.381 0.00 0.00 0.00 4.58
246 247 2.199236 CCGGTCGTACAATAAAGGCTC 58.801 52.381 0.00 0.00 0.00 4.70
247 248 2.199236 CGGTCGTACAATAAAGGCTCC 58.801 52.381 0.00 0.00 0.00 4.70
248 249 2.417651 CGGTCGTACAATAAAGGCTCCA 60.418 50.000 0.00 0.00 0.00 3.86
249 250 3.602483 GGTCGTACAATAAAGGCTCCAA 58.398 45.455 0.00 0.00 0.00 3.53
250 251 3.621715 GGTCGTACAATAAAGGCTCCAAG 59.378 47.826 0.00 0.00 0.00 3.61
251 252 3.063588 GTCGTACAATAAAGGCTCCAAGC 59.936 47.826 0.00 0.00 41.46 4.01
260 261 3.334054 GCTCCAAGCCCTCCACCT 61.334 66.667 0.00 0.00 34.48 4.00
261 262 2.993853 CTCCAAGCCCTCCACCTC 59.006 66.667 0.00 0.00 0.00 3.85
262 263 2.610859 TCCAAGCCCTCCACCTCC 60.611 66.667 0.00 0.00 0.00 4.30
263 264 2.612115 CCAAGCCCTCCACCTCCT 60.612 66.667 0.00 0.00 0.00 3.69
264 265 2.674220 CCAAGCCCTCCACCTCCTC 61.674 68.421 0.00 0.00 0.00 3.71
265 266 2.285743 AAGCCCTCCACCTCCTCC 60.286 66.667 0.00 0.00 0.00 4.30
266 267 2.886636 AAGCCCTCCACCTCCTCCT 61.887 63.158 0.00 0.00 0.00 3.69
267 268 2.766229 GCCCTCCACCTCCTCCTC 60.766 72.222 0.00 0.00 0.00 3.71
268 269 2.041405 CCCTCCACCTCCTCCTCC 60.041 72.222 0.00 0.00 0.00 4.30
269 270 2.641746 CCCTCCACCTCCTCCTCCT 61.642 68.421 0.00 0.00 0.00 3.69
270 271 1.075600 CCTCCACCTCCTCCTCCTC 60.076 68.421 0.00 0.00 0.00 3.71
271 272 1.700368 CTCCACCTCCTCCTCCTCA 59.300 63.158 0.00 0.00 0.00 3.86
272 273 0.264359 CTCCACCTCCTCCTCCTCAT 59.736 60.000 0.00 0.00 0.00 2.90
273 274 0.263172 TCCACCTCCTCCTCCTCATC 59.737 60.000 0.00 0.00 0.00 2.92
274 275 0.762461 CCACCTCCTCCTCCTCATCC 60.762 65.000 0.00 0.00 0.00 3.51
275 276 0.264359 CACCTCCTCCTCCTCATCCT 59.736 60.000 0.00 0.00 0.00 3.24
276 277 0.560688 ACCTCCTCCTCCTCATCCTC 59.439 60.000 0.00 0.00 0.00 3.71
277 278 0.178935 CCTCCTCCTCCTCATCCTCC 60.179 65.000 0.00 0.00 0.00 4.30
278 279 0.560193 CTCCTCCTCCTCATCCTCCA 59.440 60.000 0.00 0.00 0.00 3.86
279 280 1.018840 TCCTCCTCCTCATCCTCCAA 58.981 55.000 0.00 0.00 0.00 3.53
280 281 1.127343 CCTCCTCCTCATCCTCCAAC 58.873 60.000 0.00 0.00 0.00 3.77
281 282 1.343884 CCTCCTCCTCATCCTCCAACT 60.344 57.143 0.00 0.00 0.00 3.16
282 283 2.038659 CTCCTCCTCATCCTCCAACTC 58.961 57.143 0.00 0.00 0.00 3.01
283 284 1.127343 CCTCCTCATCCTCCAACTCC 58.873 60.000 0.00 0.00 0.00 3.85
284 285 1.343884 CCTCCTCATCCTCCAACTCCT 60.344 57.143 0.00 0.00 0.00 3.69
285 286 2.038659 CTCCTCATCCTCCAACTCCTC 58.961 57.143 0.00 0.00 0.00 3.71
286 287 1.648568 TCCTCATCCTCCAACTCCTCT 59.351 52.381 0.00 0.00 0.00 3.69
287 288 2.859404 TCCTCATCCTCCAACTCCTCTA 59.141 50.000 0.00 0.00 0.00 2.43
288 289 2.962421 CCTCATCCTCCAACTCCTCTAC 59.038 54.545 0.00 0.00 0.00 2.59
289 290 3.628513 CCTCATCCTCCAACTCCTCTACA 60.629 52.174 0.00 0.00 0.00 2.74
290 291 3.636300 CTCATCCTCCAACTCCTCTACAG 59.364 52.174 0.00 0.00 0.00 2.74
291 292 3.269643 TCATCCTCCAACTCCTCTACAGA 59.730 47.826 0.00 0.00 0.00 3.41
292 293 4.078922 TCATCCTCCAACTCCTCTACAGAT 60.079 45.833 0.00 0.00 0.00 2.90
293 294 3.636679 TCCTCCAACTCCTCTACAGATG 58.363 50.000 0.00 0.00 0.00 2.90
294 295 2.102252 CCTCCAACTCCTCTACAGATGC 59.898 54.545 0.00 0.00 0.00 3.91
295 296 2.102252 CTCCAACTCCTCTACAGATGCC 59.898 54.545 0.00 0.00 0.00 4.40
296 297 1.833630 CCAACTCCTCTACAGATGCCA 59.166 52.381 0.00 0.00 0.00 4.92
297 298 2.437281 CCAACTCCTCTACAGATGCCAT 59.563 50.000 0.00 0.00 0.00 4.40
298 299 3.494048 CCAACTCCTCTACAGATGCCATC 60.494 52.174 0.00 0.00 0.00 3.51
299 300 3.037851 ACTCCTCTACAGATGCCATCA 57.962 47.619 7.56 0.00 0.00 3.07
300 301 3.585360 ACTCCTCTACAGATGCCATCAT 58.415 45.455 7.56 0.00 35.17 2.45
301 302 3.324268 ACTCCTCTACAGATGCCATCATG 59.676 47.826 7.56 5.18 31.96 3.07
302 303 3.577415 CTCCTCTACAGATGCCATCATGA 59.423 47.826 7.56 0.00 31.96 3.07
303 304 3.969312 TCCTCTACAGATGCCATCATGAA 59.031 43.478 7.56 0.00 31.96 2.57
304 305 4.596212 TCCTCTACAGATGCCATCATGAAT 59.404 41.667 7.56 0.00 31.96 2.57
305 306 4.936411 CCTCTACAGATGCCATCATGAATC 59.064 45.833 7.56 0.00 31.96 2.52
306 307 4.563061 TCTACAGATGCCATCATGAATCG 58.437 43.478 7.56 0.00 31.96 3.34
307 308 1.878088 ACAGATGCCATCATGAATCGC 59.122 47.619 7.56 2.04 31.96 4.58
308 309 1.199327 CAGATGCCATCATGAATCGCC 59.801 52.381 7.56 0.00 31.96 5.54
309 310 1.202842 AGATGCCATCATGAATCGCCA 60.203 47.619 7.56 0.00 31.96 5.69
310 311 1.199327 GATGCCATCATGAATCGCCAG 59.801 52.381 0.00 0.00 31.96 4.85
311 312 1.285023 GCCATCATGAATCGCCAGC 59.715 57.895 0.00 0.00 0.00 4.85
312 313 1.954528 CCATCATGAATCGCCAGCC 59.045 57.895 0.00 0.00 0.00 4.85
313 314 1.572941 CATCATGAATCGCCAGCCG 59.427 57.895 0.00 0.00 38.61 5.52
314 315 2.256591 ATCATGAATCGCCAGCCGC 61.257 57.895 0.00 0.00 36.73 6.53
315 316 3.957535 CATGAATCGCCAGCCGCC 61.958 66.667 0.00 0.00 36.73 6.13
343 344 1.803289 GAGCCAATCGAGCAAACCC 59.197 57.895 0.00 0.00 0.00 4.11
344 345 0.678048 GAGCCAATCGAGCAAACCCT 60.678 55.000 0.00 0.00 0.00 4.34
345 346 0.618458 AGCCAATCGAGCAAACCCTA 59.382 50.000 0.00 0.00 0.00 3.53
346 347 1.017387 GCCAATCGAGCAAACCCTAG 58.983 55.000 0.00 0.00 0.00 3.02
347 348 1.406887 GCCAATCGAGCAAACCCTAGA 60.407 52.381 0.00 0.00 0.00 2.43
348 349 2.555199 CCAATCGAGCAAACCCTAGAG 58.445 52.381 0.00 0.00 0.00 2.43
349 350 1.936547 CAATCGAGCAAACCCTAGAGC 59.063 52.381 0.00 0.00 0.00 4.09
350 351 0.103208 ATCGAGCAAACCCTAGAGCG 59.897 55.000 0.00 0.00 0.00 5.03
351 352 2.167861 CGAGCAAACCCTAGAGCGC 61.168 63.158 0.00 0.00 0.00 5.92
352 353 1.815840 GAGCAAACCCTAGAGCGCC 60.816 63.158 2.29 0.00 0.00 6.53
353 354 3.195698 GCAAACCCTAGAGCGCCG 61.196 66.667 2.29 0.00 0.00 6.46
354 355 3.195698 CAAACCCTAGAGCGCCGC 61.196 66.667 2.29 0.00 0.00 6.53
355 356 4.468689 AAACCCTAGAGCGCCGCC 62.469 66.667 4.98 0.00 0.00 6.13
371 372 3.437795 CCGAGCTGCTTTGGGCTG 61.438 66.667 2.53 0.00 42.39 4.85
372 373 3.437795 CGAGCTGCTTTGGGCTGG 61.438 66.667 2.53 0.00 42.39 4.85
373 374 3.066814 GAGCTGCTTTGGGCTGGG 61.067 66.667 2.53 0.00 42.39 4.45
389 390 2.948386 GGGCCAAAGTCCAAGACTC 58.052 57.895 4.39 0.00 42.59 3.36
390 391 0.955919 GGGCCAAAGTCCAAGACTCG 60.956 60.000 4.39 0.00 42.59 4.18
391 392 0.250338 GGCCAAAGTCCAAGACTCGT 60.250 55.000 0.00 0.00 42.59 4.18
392 393 1.149148 GCCAAAGTCCAAGACTCGTC 58.851 55.000 0.00 0.00 42.59 4.20
393 394 1.540363 GCCAAAGTCCAAGACTCGTCA 60.540 52.381 0.00 0.00 42.59 4.35
394 395 2.408050 CCAAAGTCCAAGACTCGTCAG 58.592 52.381 0.00 0.00 42.59 3.51
395 396 1.795286 CAAAGTCCAAGACTCGTCAGC 59.205 52.381 0.00 0.00 42.59 4.26
396 397 0.318762 AAGTCCAAGACTCGTCAGCC 59.681 55.000 0.00 0.00 42.59 4.85
397 398 1.079750 GTCCAAGACTCGTCAGCCC 60.080 63.158 0.00 0.00 0.00 5.19
398 399 2.266055 CCAAGACTCGTCAGCCCC 59.734 66.667 0.00 0.00 0.00 5.80
399 400 2.286523 CCAAGACTCGTCAGCCCCT 61.287 63.158 0.00 0.00 0.00 4.79
400 401 1.216710 CAAGACTCGTCAGCCCCTC 59.783 63.158 0.00 0.00 0.00 4.30
401 402 1.228894 AAGACTCGTCAGCCCCTCA 60.229 57.895 0.00 0.00 0.00 3.86
402 403 1.254284 AAGACTCGTCAGCCCCTCAG 61.254 60.000 0.00 0.00 0.00 3.35
403 404 2.681778 ACTCGTCAGCCCCTCAGG 60.682 66.667 0.00 0.00 39.47 3.86
404 405 2.681778 CTCGTCAGCCCCTCAGGT 60.682 66.667 0.00 0.00 38.26 4.00
405 406 2.997315 TCGTCAGCCCCTCAGGTG 60.997 66.667 0.00 0.00 38.26 4.00
406 407 3.314331 CGTCAGCCCCTCAGGTGT 61.314 66.667 0.00 0.00 38.26 4.16
407 408 2.665603 GTCAGCCCCTCAGGTGTC 59.334 66.667 0.00 0.00 38.26 3.67
408 409 2.607750 TCAGCCCCTCAGGTGTCC 60.608 66.667 0.00 0.00 38.26 4.02
409 410 4.087892 CAGCCCCTCAGGTGTCCG 62.088 72.222 0.00 0.00 38.26 4.79
410 411 4.640690 AGCCCCTCAGGTGTCCGT 62.641 66.667 0.00 0.00 38.26 4.69
411 412 3.637273 GCCCCTCAGGTGTCCGTT 61.637 66.667 0.00 0.00 38.26 4.44
412 413 2.288025 GCCCCTCAGGTGTCCGTTA 61.288 63.158 0.00 0.00 38.26 3.18
413 414 1.898154 CCCCTCAGGTGTCCGTTAG 59.102 63.158 0.00 0.00 0.00 2.34
414 415 0.903454 CCCCTCAGGTGTCCGTTAGT 60.903 60.000 0.00 0.00 0.00 2.24
415 416 0.974383 CCCTCAGGTGTCCGTTAGTT 59.026 55.000 0.00 0.00 0.00 2.24
416 417 1.067071 CCCTCAGGTGTCCGTTAGTTC 60.067 57.143 0.00 0.00 0.00 3.01
417 418 1.616865 CCTCAGGTGTCCGTTAGTTCA 59.383 52.381 0.00 0.00 0.00 3.18
418 419 2.609737 CCTCAGGTGTCCGTTAGTTCAC 60.610 54.545 0.00 0.00 0.00 3.18
422 423 3.665745 GGTGTCCGTTAGTTCACCTAA 57.334 47.619 6.02 0.00 44.57 2.69
423 424 3.993920 GGTGTCCGTTAGTTCACCTAAA 58.006 45.455 6.02 0.00 44.57 1.85
424 425 4.379652 GGTGTCCGTTAGTTCACCTAAAA 58.620 43.478 6.02 0.00 44.57 1.52
425 426 4.815846 GGTGTCCGTTAGTTCACCTAAAAA 59.184 41.667 6.02 0.00 44.57 1.94
442 443 2.243602 AAAAAGGTGTCCGTTAGCGA 57.756 45.000 0.00 0.00 41.33 4.93
443 444 2.467566 AAAAGGTGTCCGTTAGCGAT 57.532 45.000 0.00 0.00 41.33 4.58
444 445 3.598019 AAAAGGTGTCCGTTAGCGATA 57.402 42.857 0.00 0.00 41.33 2.92
445 446 3.598019 AAAGGTGTCCGTTAGCGATAA 57.402 42.857 0.00 0.00 41.33 1.75
446 447 2.865343 AGGTGTCCGTTAGCGATAAG 57.135 50.000 0.00 0.00 41.33 1.73
447 448 2.372264 AGGTGTCCGTTAGCGATAAGA 58.628 47.619 0.00 0.00 41.33 2.10
448 449 2.756760 AGGTGTCCGTTAGCGATAAGAA 59.243 45.455 0.00 0.00 41.33 2.52
449 450 3.194116 AGGTGTCCGTTAGCGATAAGAAA 59.806 43.478 0.00 0.00 41.33 2.52
450 451 3.928375 GGTGTCCGTTAGCGATAAGAAAA 59.072 43.478 0.00 0.00 41.33 2.29
451 452 4.389687 GGTGTCCGTTAGCGATAAGAAAAA 59.610 41.667 0.00 0.00 41.33 1.94
557 558 8.128016 GATTTTGAAATCAGCATTCCATCTTC 57.872 34.615 10.71 0.00 43.29 2.87
558 559 4.888038 TGAAATCAGCATTCCATCTTCG 57.112 40.909 0.00 0.00 0.00 3.79
559 560 3.065786 TGAAATCAGCATTCCATCTTCGC 59.934 43.478 0.00 0.00 0.00 4.70
560 561 2.634815 ATCAGCATTCCATCTTCGCT 57.365 45.000 0.00 0.00 0.00 4.93
563 564 2.634815 AGCATTCCATCTTCGCTGAT 57.365 45.000 0.00 0.00 0.00 2.90
564 565 2.928334 AGCATTCCATCTTCGCTGATT 58.072 42.857 0.00 0.00 0.00 2.57
565 566 3.285484 AGCATTCCATCTTCGCTGATTT 58.715 40.909 0.00 0.00 0.00 2.17
566 567 3.698040 AGCATTCCATCTTCGCTGATTTT 59.302 39.130 0.00 0.00 0.00 1.82
567 568 4.883585 AGCATTCCATCTTCGCTGATTTTA 59.116 37.500 0.00 0.00 0.00 1.52
568 569 5.357878 AGCATTCCATCTTCGCTGATTTTAA 59.642 36.000 0.00 0.00 0.00 1.52
569 570 5.684626 GCATTCCATCTTCGCTGATTTTAAG 59.315 40.000 0.00 0.00 0.00 1.85
570 571 6.458751 GCATTCCATCTTCGCTGATTTTAAGA 60.459 38.462 0.00 0.00 32.85 2.10
685 686 0.518636 CCGACTCGTTCCGTGAACTA 59.481 55.000 12.80 3.90 40.05 2.24
1152 1155 0.318445 GTCCGTTCTACGTGTGCAGT 60.318 55.000 0.00 0.00 40.58 4.40
1489 1492 5.559148 ACCCATTTGCAAATACTTTTGGA 57.441 34.783 23.69 0.00 42.09 3.53
1957 1962 6.127730 CGGAGCCAAACAATTAAGGTTAGAAT 60.128 38.462 0.00 0.00 0.00 2.40
2230 2237 0.464452 GCTGGTAACCGCTAGGACAT 59.536 55.000 0.00 0.00 41.02 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.478916 GAGGAGTGTAAGTGGCCTCTC 59.521 57.143 7.99 0.00 41.44 3.20
6 7 0.456312 CGACGAGGAGTGTAAGTGGC 60.456 60.000 0.00 0.00 0.00 5.01
7 8 1.162698 TCGACGAGGAGTGTAAGTGG 58.837 55.000 0.00 0.00 0.00 4.00
8 9 2.161808 ACATCGACGAGGAGTGTAAGTG 59.838 50.000 17.43 1.25 0.00 3.16
10 11 3.119955 TCAACATCGACGAGGAGTGTAAG 60.120 47.826 17.43 6.02 0.00 2.34
11 12 2.815503 TCAACATCGACGAGGAGTGTAA 59.184 45.455 17.43 0.00 0.00 2.41
12 13 2.429478 TCAACATCGACGAGGAGTGTA 58.571 47.619 17.43 2.20 0.00 2.90
13 14 1.244816 TCAACATCGACGAGGAGTGT 58.755 50.000 17.43 6.24 0.00 3.55
14 15 2.095212 TCTTCAACATCGACGAGGAGTG 60.095 50.000 17.43 13.17 0.00 3.51
15 16 2.095161 GTCTTCAACATCGACGAGGAGT 60.095 50.000 17.43 5.54 0.00 3.85
16 17 2.520979 GTCTTCAACATCGACGAGGAG 58.479 52.381 17.43 8.34 0.00 3.69
17 18 2.631418 GTCTTCAACATCGACGAGGA 57.369 50.000 17.43 1.90 0.00 3.71
22 23 2.631418 TCTCCGTCTTCAACATCGAC 57.369 50.000 0.00 0.00 0.00 4.20
23 24 2.557056 ACTTCTCCGTCTTCAACATCGA 59.443 45.455 0.00 0.00 0.00 3.59
24 25 2.917971 GACTTCTCCGTCTTCAACATCG 59.082 50.000 0.00 0.00 0.00 3.84
25 26 4.082463 AGAGACTTCTCCGTCTTCAACATC 60.082 45.833 2.47 0.00 43.91 3.06
26 27 3.829601 AGAGACTTCTCCGTCTTCAACAT 59.170 43.478 2.47 0.00 43.91 2.71
27 28 3.004839 CAGAGACTTCTCCGTCTTCAACA 59.995 47.826 2.47 0.00 43.91 3.33
28 29 3.253677 TCAGAGACTTCTCCGTCTTCAAC 59.746 47.826 2.47 0.00 43.91 3.18
29 30 3.487372 TCAGAGACTTCTCCGTCTTCAA 58.513 45.455 2.47 0.00 43.91 2.69
30 31 3.078097 CTCAGAGACTTCTCCGTCTTCA 58.922 50.000 2.47 0.00 43.91 3.02
31 32 2.422127 CCTCAGAGACTTCTCCGTCTTC 59.578 54.545 0.00 0.00 43.91 2.87
32 33 2.040545 TCCTCAGAGACTTCTCCGTCTT 59.959 50.000 0.00 0.00 43.91 3.01
33 34 1.631388 TCCTCAGAGACTTCTCCGTCT 59.369 52.381 0.00 0.00 46.39 4.18
34 35 2.116827 TCCTCAGAGACTTCTCCGTC 57.883 55.000 0.00 0.00 43.88 4.79
35 36 2.588464 TTCCTCAGAGACTTCTCCGT 57.412 50.000 0.00 0.00 43.88 4.69
36 37 3.944055 TTTTCCTCAGAGACTTCTCCG 57.056 47.619 0.00 0.00 43.88 4.63
37 38 4.320023 GGTTTTTCCTCAGAGACTTCTCC 58.680 47.826 0.00 0.00 43.88 3.71
38 39 3.991121 CGGTTTTTCCTCAGAGACTTCTC 59.009 47.826 0.00 0.00 43.17 2.87
39 40 3.244249 CCGGTTTTTCCTCAGAGACTTCT 60.244 47.826 0.00 0.00 0.00 2.85
40 41 3.067833 CCGGTTTTTCCTCAGAGACTTC 58.932 50.000 0.00 0.00 0.00 3.01
41 42 2.224548 CCCGGTTTTTCCTCAGAGACTT 60.225 50.000 0.00 0.00 0.00 3.01
42 43 1.348036 CCCGGTTTTTCCTCAGAGACT 59.652 52.381 0.00 0.00 0.00 3.24
43 44 1.071857 ACCCGGTTTTTCCTCAGAGAC 59.928 52.381 0.00 0.00 0.00 3.36
44 45 1.071699 CACCCGGTTTTTCCTCAGAGA 59.928 52.381 0.00 0.00 0.00 3.10
45 46 1.202770 ACACCCGGTTTTTCCTCAGAG 60.203 52.381 0.00 0.00 0.00 3.35
46 47 0.841289 ACACCCGGTTTTTCCTCAGA 59.159 50.000 0.00 0.00 0.00 3.27
47 48 2.038033 TCTACACCCGGTTTTTCCTCAG 59.962 50.000 0.00 0.00 0.00 3.35
48 49 2.048601 TCTACACCCGGTTTTTCCTCA 58.951 47.619 0.00 0.00 0.00 3.86
49 50 2.420642 GTCTACACCCGGTTTTTCCTC 58.579 52.381 0.00 0.00 0.00 3.71
50 51 1.072806 GGTCTACACCCGGTTTTTCCT 59.927 52.381 0.00 0.00 36.54 3.36
51 52 1.072806 AGGTCTACACCCGGTTTTTCC 59.927 52.381 0.00 0.00 45.12 3.13
52 53 2.551032 CAAGGTCTACACCCGGTTTTTC 59.449 50.000 0.00 0.00 45.12 2.29
53 54 2.578786 CAAGGTCTACACCCGGTTTTT 58.421 47.619 0.00 0.00 45.12 1.94
54 55 1.816572 GCAAGGTCTACACCCGGTTTT 60.817 52.381 0.00 0.00 45.12 2.43
55 56 0.250597 GCAAGGTCTACACCCGGTTT 60.251 55.000 0.00 0.00 45.12 3.27
56 57 1.373812 GCAAGGTCTACACCCGGTT 59.626 57.895 0.00 0.00 45.12 4.44
57 58 2.939261 CGCAAGGTCTACACCCGGT 61.939 63.158 0.00 0.00 45.12 5.28
58 59 2.125673 CGCAAGGTCTACACCCGG 60.126 66.667 0.00 0.00 45.12 5.73
59 60 2.813908 GCGCAAGGTCTACACCCG 60.814 66.667 0.30 0.00 45.12 5.28
60 61 2.436115 GGCGCAAGGTCTACACCC 60.436 66.667 10.83 0.00 45.12 4.61
61 62 2.436115 GGGCGCAAGGTCTACACC 60.436 66.667 10.83 0.00 44.19 4.16
62 63 1.741770 CTGGGCGCAAGGTCTACAC 60.742 63.158 10.83 0.00 38.28 2.90
63 64 2.662596 CTGGGCGCAAGGTCTACA 59.337 61.111 10.83 0.00 38.28 2.74
64 65 2.820037 GCTGGGCGCAAGGTCTAC 60.820 66.667 10.83 0.00 38.92 2.59
65 66 4.096003 GGCTGGGCGCAAGGTCTA 62.096 66.667 10.83 0.00 41.67 2.59
77 78 2.825836 GCACGATCCCAAGGCTGG 60.826 66.667 0.00 0.00 43.10 4.85
78 79 2.110967 CAGCACGATCCCAAGGCTG 61.111 63.158 0.00 0.00 44.91 4.85
79 80 2.270205 CAGCACGATCCCAAGGCT 59.730 61.111 0.00 0.00 34.64 4.58
80 81 2.615227 ATCCAGCACGATCCCAAGGC 62.615 60.000 0.00 0.00 0.00 4.35
81 82 0.816825 CATCCAGCACGATCCCAAGG 60.817 60.000 0.00 0.00 0.00 3.61
82 83 0.178767 TCATCCAGCACGATCCCAAG 59.821 55.000 0.00 0.00 0.00 3.61
83 84 0.839277 ATCATCCAGCACGATCCCAA 59.161 50.000 0.00 0.00 0.00 4.12
84 85 0.107268 CATCATCCAGCACGATCCCA 59.893 55.000 0.00 0.00 0.00 4.37
85 86 0.604780 CCATCATCCAGCACGATCCC 60.605 60.000 0.00 0.00 0.00 3.85
86 87 0.394192 TCCATCATCCAGCACGATCC 59.606 55.000 0.00 0.00 0.00 3.36
87 88 1.069823 ACTCCATCATCCAGCACGATC 59.930 52.381 0.00 0.00 0.00 3.69
88 89 1.069823 GACTCCATCATCCAGCACGAT 59.930 52.381 0.00 0.00 0.00 3.73
89 90 0.461548 GACTCCATCATCCAGCACGA 59.538 55.000 0.00 0.00 0.00 4.35
90 91 0.531532 GGACTCCATCATCCAGCACG 60.532 60.000 0.00 0.00 34.87 5.34
91 92 0.543277 TGGACTCCATCATCCAGCAC 59.457 55.000 0.00 0.00 40.17 4.40
92 93 3.010627 TGGACTCCATCATCCAGCA 57.989 52.632 0.00 0.00 40.17 4.41
96 97 2.053244 AGGTCATGGACTCCATCATCC 58.947 52.381 7.69 10.27 43.15 3.51
97 98 3.390639 AGAAGGTCATGGACTCCATCATC 59.609 47.826 7.69 0.00 43.15 2.92
98 99 3.390639 GAGAAGGTCATGGACTCCATCAT 59.609 47.826 7.69 0.00 43.15 2.45
99 100 2.768527 GAGAAGGTCATGGACTCCATCA 59.231 50.000 7.69 0.00 43.15 3.07
100 101 2.768527 TGAGAAGGTCATGGACTCCATC 59.231 50.000 7.69 0.00 43.15 3.51
101 102 2.837947 TGAGAAGGTCATGGACTCCAT 58.162 47.619 4.55 4.55 46.37 3.41
102 103 2.325661 TGAGAAGGTCATGGACTCCA 57.674 50.000 0.00 0.00 38.19 3.86
111 112 0.247460 CGAGGCACATGAGAAGGTCA 59.753 55.000 0.00 0.00 40.38 4.02
112 113 1.086634 GCGAGGCACATGAGAAGGTC 61.087 60.000 0.00 0.00 0.00 3.85
113 114 1.078848 GCGAGGCACATGAGAAGGT 60.079 57.895 0.00 0.00 0.00 3.50
114 115 0.392193 AAGCGAGGCACATGAGAAGG 60.392 55.000 0.00 0.00 0.00 3.46
115 116 1.005340 GAAGCGAGGCACATGAGAAG 58.995 55.000 0.00 0.00 0.00 2.85
116 117 0.610174 AGAAGCGAGGCACATGAGAA 59.390 50.000 0.00 0.00 0.00 2.87
117 118 0.610174 AAGAAGCGAGGCACATGAGA 59.390 50.000 0.00 0.00 0.00 3.27
118 119 1.005340 GAAGAAGCGAGGCACATGAG 58.995 55.000 0.00 0.00 0.00 2.90
119 120 0.737367 CGAAGAAGCGAGGCACATGA 60.737 55.000 0.00 0.00 0.00 3.07
120 121 1.712081 CGAAGAAGCGAGGCACATG 59.288 57.895 0.00 0.00 0.00 3.21
121 122 2.103042 GCGAAGAAGCGAGGCACAT 61.103 57.895 0.00 0.00 0.00 3.21
122 123 2.738521 GCGAAGAAGCGAGGCACA 60.739 61.111 0.00 0.00 0.00 4.57
123 124 3.491652 GGCGAAGAAGCGAGGCAC 61.492 66.667 0.00 0.00 38.18 5.01
124 125 3.939837 CTGGCGAAGAAGCGAGGCA 62.940 63.158 0.00 0.00 38.95 4.75
125 126 3.191539 CTGGCGAAGAAGCGAGGC 61.192 66.667 0.00 0.00 38.95 4.70
126 127 1.355066 GAACTGGCGAAGAAGCGAGG 61.355 60.000 6.01 0.00 45.40 4.63
127 128 0.389166 AGAACTGGCGAAGAAGCGAG 60.389 55.000 0.00 0.00 46.32 5.03
128 129 0.388649 GAGAACTGGCGAAGAAGCGA 60.389 55.000 0.00 0.00 38.18 4.93
129 130 1.355066 GGAGAACTGGCGAAGAAGCG 61.355 60.000 0.00 0.00 38.18 4.68
130 131 0.036858 AGGAGAACTGGCGAAGAAGC 60.037 55.000 0.00 0.00 0.00 3.86
131 132 1.404851 GGAGGAGAACTGGCGAAGAAG 60.405 57.143 0.00 0.00 0.00 2.85
132 133 0.608640 GGAGGAGAACTGGCGAAGAA 59.391 55.000 0.00 0.00 0.00 2.52
133 134 1.258445 GGGAGGAGAACTGGCGAAGA 61.258 60.000 0.00 0.00 0.00 2.87
134 135 1.219393 GGGAGGAGAACTGGCGAAG 59.781 63.158 0.00 0.00 0.00 3.79
135 136 2.646175 CGGGAGGAGAACTGGCGAA 61.646 63.158 0.00 0.00 0.00 4.70
136 137 3.068691 CGGGAGGAGAACTGGCGA 61.069 66.667 0.00 0.00 0.00 5.54
137 138 4.821589 GCGGGAGGAGAACTGGCG 62.822 72.222 0.00 0.00 0.00 5.69
138 139 2.860972 GAAGCGGGAGGAGAACTGGC 62.861 65.000 0.00 0.00 0.00 4.85
139 140 1.219393 GAAGCGGGAGGAGAACTGG 59.781 63.158 0.00 0.00 0.00 4.00
140 141 1.219393 GGAAGCGGGAGGAGAACTG 59.781 63.158 0.00 0.00 0.00 3.16
141 142 2.352032 CGGAAGCGGGAGGAGAACT 61.352 63.158 0.00 0.00 0.00 3.01
142 143 2.184579 CGGAAGCGGGAGGAGAAC 59.815 66.667 0.00 0.00 0.00 3.01
143 144 2.036731 TCGGAAGCGGGAGGAGAA 59.963 61.111 0.00 0.00 0.00 2.87
144 145 2.440430 CTCGGAAGCGGGAGGAGA 60.440 66.667 0.00 0.00 0.00 3.71
145 146 2.756283 ACTCGGAAGCGGGAGGAG 60.756 66.667 0.00 0.00 34.58 3.69
146 147 2.754658 GACTCGGAAGCGGGAGGA 60.755 66.667 0.00 0.00 34.58 3.71
147 148 2.286127 GAAGACTCGGAAGCGGGAGG 62.286 65.000 0.00 0.00 34.58 4.30
148 149 1.139947 GAAGACTCGGAAGCGGGAG 59.860 63.158 0.00 0.00 36.36 4.30
149 150 1.304217 AGAAGACTCGGAAGCGGGA 60.304 57.895 0.00 0.00 0.00 5.14
150 151 1.139947 GAGAAGACTCGGAAGCGGG 59.860 63.158 0.00 0.00 33.32 6.13
151 152 1.139947 GGAGAAGACTCGGAAGCGG 59.860 63.158 0.00 0.00 43.44 5.52
152 153 0.099791 GAGGAGAAGACTCGGAAGCG 59.900 60.000 0.00 0.00 43.44 4.68
153 154 1.470051 AGAGGAGAAGACTCGGAAGC 58.530 55.000 0.00 0.00 43.44 3.86
154 155 2.425668 GGAAGAGGAGAAGACTCGGAAG 59.574 54.545 0.00 0.00 43.44 3.46
155 156 2.041891 AGGAAGAGGAGAAGACTCGGAA 59.958 50.000 0.00 0.00 43.44 4.30
156 157 1.636519 AGGAAGAGGAGAAGACTCGGA 59.363 52.381 0.00 0.00 43.44 4.55
157 158 2.021457 GAGGAAGAGGAGAAGACTCGG 58.979 57.143 0.00 0.00 43.44 4.63
158 159 2.021457 GGAGGAAGAGGAGAAGACTCG 58.979 57.143 0.00 0.00 43.44 4.18
159 160 2.384828 GGGAGGAAGAGGAGAAGACTC 58.615 57.143 0.00 0.00 41.94 3.36
160 161 1.341581 CGGGAGGAAGAGGAGAAGACT 60.342 57.143 0.00 0.00 0.00 3.24
161 162 1.107945 CGGGAGGAAGAGGAGAAGAC 58.892 60.000 0.00 0.00 0.00 3.01
162 163 0.705253 ACGGGAGGAAGAGGAGAAGA 59.295 55.000 0.00 0.00 0.00 2.87
163 164 1.107945 GACGGGAGGAAGAGGAGAAG 58.892 60.000 0.00 0.00 0.00 2.85
164 165 0.680280 CGACGGGAGGAAGAGGAGAA 60.680 60.000 0.00 0.00 0.00 2.87
165 166 1.077644 CGACGGGAGGAAGAGGAGA 60.078 63.158 0.00 0.00 0.00 3.71
166 167 2.122167 CCGACGGGAGGAAGAGGAG 61.122 68.421 5.81 0.00 34.06 3.69
167 168 2.044252 CCGACGGGAGGAAGAGGA 60.044 66.667 5.81 0.00 34.06 3.71
177 178 3.959329 AAGGAGAGGTCCCGACGGG 62.959 68.421 27.86 27.86 45.26 5.28
178 179 2.362632 AAGGAGAGGTCCCGACGG 60.363 66.667 6.99 6.99 45.26 4.79
179 180 1.378124 GAGAAGGAGAGGTCCCGACG 61.378 65.000 0.00 0.00 45.26 5.12
180 181 1.038681 GGAGAAGGAGAGGTCCCGAC 61.039 65.000 0.00 0.00 45.26 4.79
181 182 1.215679 AGGAGAAGGAGAGGTCCCGA 61.216 60.000 0.00 0.00 45.26 5.14
182 183 0.753848 GAGGAGAAGGAGAGGTCCCG 60.754 65.000 0.00 0.00 45.26 5.14
183 184 0.397957 GGAGGAGAAGGAGAGGTCCC 60.398 65.000 0.00 0.00 45.26 4.46
184 185 0.336737 TGGAGGAGAAGGAGAGGTCC 59.663 60.000 0.00 0.00 44.33 4.46
185 186 1.480789 GTGGAGGAGAAGGAGAGGTC 58.519 60.000 0.00 0.00 0.00 3.85
186 187 0.041982 GGTGGAGGAGAAGGAGAGGT 59.958 60.000 0.00 0.00 0.00 3.85
187 188 1.040339 CGGTGGAGGAGAAGGAGAGG 61.040 65.000 0.00 0.00 0.00 3.69
188 189 1.671901 GCGGTGGAGGAGAAGGAGAG 61.672 65.000 0.00 0.00 0.00 3.20
189 190 1.682684 GCGGTGGAGGAGAAGGAGA 60.683 63.158 0.00 0.00 0.00 3.71
190 191 2.726351 GGCGGTGGAGGAGAAGGAG 61.726 68.421 0.00 0.00 0.00 3.69
191 192 2.683933 GGCGGTGGAGGAGAAGGA 60.684 66.667 0.00 0.00 0.00 3.36
192 193 3.787001 GGGCGGTGGAGGAGAAGG 61.787 72.222 0.00 0.00 0.00 3.46
193 194 3.003173 TGGGCGGTGGAGGAGAAG 61.003 66.667 0.00 0.00 0.00 2.85
194 195 3.003173 CTGGGCGGTGGAGGAGAA 61.003 66.667 0.00 0.00 0.00 2.87
207 208 4.722700 CGAAGTGGGTGGCCTGGG 62.723 72.222 3.32 0.00 0.00 4.45
217 218 3.751246 TACGACCGGGCGAAGTGG 61.751 66.667 41.17 6.33 34.83 4.00
218 219 2.505557 GTACGACCGGGCGAAGTG 60.506 66.667 41.17 7.30 34.83 3.16
219 220 1.880819 ATTGTACGACCGGGCGAAGT 61.881 55.000 41.17 18.34 34.83 3.01
220 221 0.101040 TATTGTACGACCGGGCGAAG 59.899 55.000 41.17 8.29 34.83 3.79
221 222 0.529833 TTATTGTACGACCGGGCGAA 59.470 50.000 41.17 22.35 34.83 4.70
222 223 0.529833 TTTATTGTACGACCGGGCGA 59.470 50.000 41.17 18.35 34.83 5.54
223 224 0.925466 CTTTATTGTACGACCGGGCG 59.075 55.000 32.33 32.33 37.29 6.13
224 225 1.292992 CCTTTATTGTACGACCGGGC 58.707 55.000 6.32 0.00 0.00 6.13
225 226 1.134610 AGCCTTTATTGTACGACCGGG 60.135 52.381 6.32 0.00 0.00 5.73
226 227 2.199236 GAGCCTTTATTGTACGACCGG 58.801 52.381 0.00 0.00 0.00 5.28
227 228 2.199236 GGAGCCTTTATTGTACGACCG 58.801 52.381 0.00 0.00 0.00 4.79
228 229 3.255969 TGGAGCCTTTATTGTACGACC 57.744 47.619 0.00 0.00 0.00 4.79
229 230 3.063588 GCTTGGAGCCTTTATTGTACGAC 59.936 47.826 0.00 0.00 34.48 4.34
230 231 3.267483 GCTTGGAGCCTTTATTGTACGA 58.733 45.455 0.00 0.00 34.48 3.43
231 232 3.675467 GCTTGGAGCCTTTATTGTACG 57.325 47.619 0.00 0.00 34.48 3.67
243 244 3.334054 AGGTGGAGGGCTTGGAGC 61.334 66.667 0.00 0.00 41.46 4.70
244 245 2.674220 GGAGGTGGAGGGCTTGGAG 61.674 68.421 0.00 0.00 0.00 3.86
245 246 2.610859 GGAGGTGGAGGGCTTGGA 60.611 66.667 0.00 0.00 0.00 3.53
246 247 2.612115 AGGAGGTGGAGGGCTTGG 60.612 66.667 0.00 0.00 0.00 3.61
247 248 2.674220 GGAGGAGGTGGAGGGCTTG 61.674 68.421 0.00 0.00 0.00 4.01
248 249 2.285743 GGAGGAGGTGGAGGGCTT 60.286 66.667 0.00 0.00 0.00 4.35
249 250 3.288381 AGGAGGAGGTGGAGGGCT 61.288 66.667 0.00 0.00 0.00 5.19
250 251 2.766229 GAGGAGGAGGTGGAGGGC 60.766 72.222 0.00 0.00 0.00 5.19
251 252 2.041405 GGAGGAGGAGGTGGAGGG 60.041 72.222 0.00 0.00 0.00 4.30
252 253 1.075600 GAGGAGGAGGAGGTGGAGG 60.076 68.421 0.00 0.00 0.00 4.30
253 254 0.264359 ATGAGGAGGAGGAGGTGGAG 59.736 60.000 0.00 0.00 0.00 3.86
254 255 0.263172 GATGAGGAGGAGGAGGTGGA 59.737 60.000 0.00 0.00 0.00 4.02
255 256 0.762461 GGATGAGGAGGAGGAGGTGG 60.762 65.000 0.00 0.00 0.00 4.61
256 257 0.264359 AGGATGAGGAGGAGGAGGTG 59.736 60.000 0.00 0.00 0.00 4.00
257 258 0.560688 GAGGATGAGGAGGAGGAGGT 59.439 60.000 0.00 0.00 0.00 3.85
258 259 0.178935 GGAGGATGAGGAGGAGGAGG 60.179 65.000 0.00 0.00 0.00 4.30
259 260 0.560193 TGGAGGATGAGGAGGAGGAG 59.440 60.000 0.00 0.00 0.00 3.69
260 261 1.018840 TTGGAGGATGAGGAGGAGGA 58.981 55.000 0.00 0.00 0.00 3.71
261 262 1.127343 GTTGGAGGATGAGGAGGAGG 58.873 60.000 0.00 0.00 0.00 4.30
262 263 2.038659 GAGTTGGAGGATGAGGAGGAG 58.961 57.143 0.00 0.00 0.00 3.69
263 264 1.343478 GGAGTTGGAGGATGAGGAGGA 60.343 57.143 0.00 0.00 0.00 3.71
264 265 1.127343 GGAGTTGGAGGATGAGGAGG 58.873 60.000 0.00 0.00 0.00 4.30
265 266 2.038659 GAGGAGTTGGAGGATGAGGAG 58.961 57.143 0.00 0.00 0.00 3.69
266 267 1.648568 AGAGGAGTTGGAGGATGAGGA 59.351 52.381 0.00 0.00 0.00 3.71
267 268 2.173126 AGAGGAGTTGGAGGATGAGG 57.827 55.000 0.00 0.00 0.00 3.86
268 269 3.636300 CTGTAGAGGAGTTGGAGGATGAG 59.364 52.174 0.00 0.00 0.00 2.90
269 270 3.269643 TCTGTAGAGGAGTTGGAGGATGA 59.730 47.826 0.00 0.00 0.00 2.92
270 271 3.636679 TCTGTAGAGGAGTTGGAGGATG 58.363 50.000 0.00 0.00 0.00 3.51
271 272 4.222336 CATCTGTAGAGGAGTTGGAGGAT 58.778 47.826 0.00 0.00 0.00 3.24
272 273 3.636679 CATCTGTAGAGGAGTTGGAGGA 58.363 50.000 0.00 0.00 0.00 3.71
273 274 2.102252 GCATCTGTAGAGGAGTTGGAGG 59.898 54.545 0.00 0.00 0.00 4.30
274 275 2.102252 GGCATCTGTAGAGGAGTTGGAG 59.898 54.545 0.00 0.00 0.00 3.86
275 276 2.111384 GGCATCTGTAGAGGAGTTGGA 58.889 52.381 0.00 0.00 0.00 3.53
276 277 1.833630 TGGCATCTGTAGAGGAGTTGG 59.166 52.381 0.00 0.00 0.00 3.77
277 278 3.133542 TGATGGCATCTGTAGAGGAGTTG 59.866 47.826 26.49 0.00 0.00 3.16
278 279 3.378512 TGATGGCATCTGTAGAGGAGTT 58.621 45.455 26.49 0.00 0.00 3.01
279 280 3.037851 TGATGGCATCTGTAGAGGAGT 57.962 47.619 26.49 0.00 0.00 3.85
280 281 3.577415 TCATGATGGCATCTGTAGAGGAG 59.423 47.826 26.49 7.45 30.68 3.69
281 282 3.580039 TCATGATGGCATCTGTAGAGGA 58.420 45.455 26.49 11.47 30.68 3.71
282 283 4.347360 TTCATGATGGCATCTGTAGAGG 57.653 45.455 26.49 9.31 30.68 3.69
283 284 4.626172 CGATTCATGATGGCATCTGTAGAG 59.374 45.833 26.49 10.95 30.68 2.43
284 285 4.563061 CGATTCATGATGGCATCTGTAGA 58.437 43.478 26.49 15.90 30.68 2.59
285 286 3.124806 GCGATTCATGATGGCATCTGTAG 59.875 47.826 26.49 14.07 39.10 2.74
286 287 3.069289 GCGATTCATGATGGCATCTGTA 58.931 45.455 26.49 16.05 39.10 2.74
287 288 1.878088 GCGATTCATGATGGCATCTGT 59.122 47.619 26.49 13.61 39.10 3.41
288 289 1.199327 GGCGATTCATGATGGCATCTG 59.801 52.381 26.49 20.64 40.84 2.90
289 290 1.202842 TGGCGATTCATGATGGCATCT 60.203 47.619 26.49 10.81 40.84 2.90
290 291 1.199327 CTGGCGATTCATGATGGCATC 59.801 52.381 20.52 20.52 40.84 3.91
291 292 1.244816 CTGGCGATTCATGATGGCAT 58.755 50.000 16.21 0.00 40.84 4.40
292 293 1.449726 GCTGGCGATTCATGATGGCA 61.450 55.000 15.39 15.39 40.84 4.92
293 294 1.285023 GCTGGCGATTCATGATGGC 59.715 57.895 0.00 2.90 38.61 4.40
294 295 1.848932 CGGCTGGCGATTCATGATGG 61.849 60.000 19.64 0.00 0.00 3.51
295 296 1.572941 CGGCTGGCGATTCATGATG 59.427 57.895 19.64 0.00 0.00 3.07
296 297 2.256591 GCGGCTGGCGATTCATGAT 61.257 57.895 28.34 0.00 0.00 2.45
297 298 2.896854 GCGGCTGGCGATTCATGA 60.897 61.111 28.34 0.00 0.00 3.07
298 299 3.957535 GGCGGCTGGCGATTCATG 61.958 66.667 28.34 0.00 44.92 3.07
325 326 0.678048 AGGGTTTGCTCGATTGGCTC 60.678 55.000 0.00 0.00 0.00 4.70
326 327 0.618458 TAGGGTTTGCTCGATTGGCT 59.382 50.000 0.00 0.00 0.00 4.75
327 328 1.017387 CTAGGGTTTGCTCGATTGGC 58.983 55.000 0.00 0.00 0.00 4.52
328 329 2.555199 CTCTAGGGTTTGCTCGATTGG 58.445 52.381 0.00 0.00 0.00 3.16
329 330 1.936547 GCTCTAGGGTTTGCTCGATTG 59.063 52.381 0.00 0.00 0.00 2.67
330 331 1.471676 CGCTCTAGGGTTTGCTCGATT 60.472 52.381 0.00 0.00 0.00 3.34
331 332 0.103208 CGCTCTAGGGTTTGCTCGAT 59.897 55.000 0.00 0.00 0.00 3.59
332 333 1.511305 CGCTCTAGGGTTTGCTCGA 59.489 57.895 0.00 0.00 0.00 4.04
333 334 2.167861 GCGCTCTAGGGTTTGCTCG 61.168 63.158 0.00 0.00 0.00 5.03
334 335 1.815840 GGCGCTCTAGGGTTTGCTC 60.816 63.158 7.64 0.00 0.00 4.26
335 336 2.269241 GGCGCTCTAGGGTTTGCT 59.731 61.111 7.64 0.00 0.00 3.91
336 337 3.195698 CGGCGCTCTAGGGTTTGC 61.196 66.667 7.64 0.00 0.00 3.68
337 338 3.195698 GCGGCGCTCTAGGGTTTG 61.196 66.667 26.86 0.00 0.00 2.93
338 339 4.468689 GGCGGCGCTCTAGGGTTT 62.469 66.667 32.30 0.00 0.00 3.27
368 369 1.228552 TCTTGGACTTTGGCCCAGC 60.229 57.895 0.00 0.00 33.43 4.85
369 370 0.111253 AGTCTTGGACTTTGGCCCAG 59.889 55.000 0.00 0.00 40.28 4.45
370 371 0.110486 GAGTCTTGGACTTTGGCCCA 59.890 55.000 0.00 0.00 43.53 5.36
371 372 0.955919 CGAGTCTTGGACTTTGGCCC 60.956 60.000 0.00 0.00 43.53 5.80
372 373 0.250338 ACGAGTCTTGGACTTTGGCC 60.250 55.000 0.00 0.00 43.53 5.36
373 374 1.149148 GACGAGTCTTGGACTTTGGC 58.851 55.000 1.62 0.00 43.53 4.52
374 375 2.408050 CTGACGAGTCTTGGACTTTGG 58.592 52.381 4.78 0.00 43.53 3.28
375 376 1.795286 GCTGACGAGTCTTGGACTTTG 59.205 52.381 4.78 1.45 43.53 2.77
376 377 1.270358 GGCTGACGAGTCTTGGACTTT 60.270 52.381 4.78 0.00 43.53 2.66
377 378 0.318762 GGCTGACGAGTCTTGGACTT 59.681 55.000 4.78 0.00 43.53 3.01
378 379 1.536943 GGGCTGACGAGTCTTGGACT 61.537 60.000 4.78 0.00 46.42 3.85
379 380 1.079750 GGGCTGACGAGTCTTGGAC 60.080 63.158 4.78 0.00 0.00 4.02
380 381 2.283529 GGGGCTGACGAGTCTTGGA 61.284 63.158 4.78 0.00 0.00 3.53
381 382 2.232298 GAGGGGCTGACGAGTCTTGG 62.232 65.000 4.78 0.00 0.00 3.61
382 383 1.216710 GAGGGGCTGACGAGTCTTG 59.783 63.158 4.78 0.00 0.00 3.02
383 384 1.228894 TGAGGGGCTGACGAGTCTT 60.229 57.895 4.78 0.00 0.00 3.01
384 385 1.680651 CTGAGGGGCTGACGAGTCT 60.681 63.158 4.78 0.00 0.00 3.24
385 386 2.716017 CCTGAGGGGCTGACGAGTC 61.716 68.421 0.00 0.00 0.00 3.36
386 387 2.681778 CCTGAGGGGCTGACGAGT 60.682 66.667 0.00 0.00 0.00 4.18
387 388 2.681778 ACCTGAGGGGCTGACGAG 60.682 66.667 2.38 0.00 39.10 4.18
388 389 2.997315 CACCTGAGGGGCTGACGA 60.997 66.667 2.38 0.00 39.10 4.20
389 390 3.302347 GACACCTGAGGGGCTGACG 62.302 68.421 0.00 0.00 39.10 4.35
390 391 2.665603 GACACCTGAGGGGCTGAC 59.334 66.667 0.00 0.00 39.10 3.51
391 392 2.607750 GGACACCTGAGGGGCTGA 60.608 66.667 0.00 0.00 39.10 4.26
392 393 4.087892 CGGACACCTGAGGGGCTG 62.088 72.222 0.00 0.00 39.10 4.85
393 394 2.741878 TAACGGACACCTGAGGGGCT 62.742 60.000 0.00 0.00 39.10 5.19
394 395 2.240162 CTAACGGACACCTGAGGGGC 62.240 65.000 0.00 0.00 39.10 5.80
395 396 0.903454 ACTAACGGACACCTGAGGGG 60.903 60.000 0.00 0.00 41.89 4.79
396 397 0.974383 AACTAACGGACACCTGAGGG 59.026 55.000 2.38 0.00 38.88 4.30
397 398 1.616865 TGAACTAACGGACACCTGAGG 59.383 52.381 0.00 0.00 0.00 3.86
398 399 2.609737 GGTGAACTAACGGACACCTGAG 60.610 54.545 0.00 0.00 46.14 3.35
399 400 1.342174 GGTGAACTAACGGACACCTGA 59.658 52.381 0.00 0.00 46.14 3.86
400 401 1.792006 GGTGAACTAACGGACACCTG 58.208 55.000 0.00 0.00 46.14 4.00
403 404 5.989551 TTTTTAGGTGAACTAACGGACAC 57.010 39.130 0.00 0.00 41.24 3.67
423 424 2.243602 TCGCTAACGGACACCTTTTT 57.756 45.000 0.00 0.00 40.63 1.94
424 425 2.467566 ATCGCTAACGGACACCTTTT 57.532 45.000 0.00 0.00 40.63 2.27
425 426 3.194116 TCTTATCGCTAACGGACACCTTT 59.806 43.478 0.00 0.00 40.63 3.11
426 427 2.756760 TCTTATCGCTAACGGACACCTT 59.243 45.455 0.00 0.00 40.63 3.50
427 428 2.372264 TCTTATCGCTAACGGACACCT 58.628 47.619 0.00 0.00 40.63 4.00
428 429 2.857592 TCTTATCGCTAACGGACACC 57.142 50.000 0.00 0.00 40.63 4.16
429 430 5.520022 TTTTTCTTATCGCTAACGGACAC 57.480 39.130 0.00 0.00 40.63 3.67
532 533 7.043590 CGAAGATGGAATGCTGATTTCAAAATC 60.044 37.037 8.25 8.25 43.91 2.17
533 534 6.755141 CGAAGATGGAATGCTGATTTCAAAAT 59.245 34.615 0.00 0.00 30.42 1.82
534 535 6.094719 CGAAGATGGAATGCTGATTTCAAAA 58.905 36.000 0.00 0.00 30.42 2.44
535 536 5.643664 CGAAGATGGAATGCTGATTTCAAA 58.356 37.500 0.00 0.00 30.42 2.69
536 537 4.439153 GCGAAGATGGAATGCTGATTTCAA 60.439 41.667 0.00 0.00 30.42 2.69
537 538 3.065786 GCGAAGATGGAATGCTGATTTCA 59.934 43.478 0.00 0.00 31.23 2.69
538 539 3.314635 AGCGAAGATGGAATGCTGATTTC 59.685 43.478 0.00 0.00 33.99 2.17
539 540 3.285484 AGCGAAGATGGAATGCTGATTT 58.715 40.909 0.00 0.00 33.99 2.17
540 541 2.928334 AGCGAAGATGGAATGCTGATT 58.072 42.857 0.00 0.00 33.99 2.57
541 542 2.634815 AGCGAAGATGGAATGCTGAT 57.365 45.000 0.00 0.00 33.99 2.90
552 553 5.440610 ACCCATCTTAAAATCAGCGAAGAT 58.559 37.500 0.00 0.00 38.81 2.40
553 554 4.843728 ACCCATCTTAAAATCAGCGAAGA 58.156 39.130 0.00 0.00 32.73 2.87
554 555 5.567138 AACCCATCTTAAAATCAGCGAAG 57.433 39.130 0.00 0.00 0.00 3.79
555 556 7.639113 ATTAACCCATCTTAAAATCAGCGAA 57.361 32.000 0.00 0.00 0.00 4.70
556 557 7.639113 AATTAACCCATCTTAAAATCAGCGA 57.361 32.000 0.00 0.00 0.00 4.93
557 558 9.612620 GATAATTAACCCATCTTAAAATCAGCG 57.387 33.333 0.00 0.00 0.00 5.18
558 559 9.914131 GGATAATTAACCCATCTTAAAATCAGC 57.086 33.333 0.24 0.00 0.00 4.26
565 566 8.700973 GGCAAAAGGATAATTAACCCATCTTAA 58.299 33.333 8.09 0.00 0.00 1.85
566 567 7.289084 GGGCAAAAGGATAATTAACCCATCTTA 59.711 37.037 8.09 0.00 34.82 2.10
567 568 6.099701 GGGCAAAAGGATAATTAACCCATCTT 59.900 38.462 8.09 0.00 34.82 2.40
568 569 5.602561 GGGCAAAAGGATAATTAACCCATCT 59.397 40.000 8.09 0.00 34.82 2.90
569 570 5.602561 AGGGCAAAAGGATAATTAACCCATC 59.397 40.000 8.09 0.00 37.28 3.51
570 571 5.537914 AGGGCAAAAGGATAATTAACCCAT 58.462 37.500 8.09 0.00 37.28 4.00
1152 1155 2.438021 CCCGATTCTTACCCCATTCTCA 59.562 50.000 0.00 0.00 0.00 3.27
1489 1492 5.526111 GTGCGATTACCATACCTACAAATGT 59.474 40.000 0.00 0.00 0.00 2.71
2160 2167 3.003763 GGGTTCGAGTCCCCAGCT 61.004 66.667 14.49 0.00 40.88 4.24
2230 2237 3.245229 ACCCATGTCAAAGTCTTGCCATA 60.245 43.478 0.00 0.00 29.52 2.74
2501 2511 5.082425 AGAAGCCCTCTGTTTCATTCAAAT 58.918 37.500 0.00 0.00 36.71 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.