Multiple sequence alignment - TraesCS1A01G041600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G041600 chr1A 100.000 2231 0 0 1 2231 22660984 22658754 0.000000e+00 4120
1 TraesCS1A01G041600 chr1A 93.713 334 19 1 347 680 169480441 169480772 1.190000e-137 499
2 TraesCS1A01G041600 chr1A 90.685 365 30 3 317 681 295462737 295462377 1.200000e-132 483
3 TraesCS1A01G041600 chr1B 91.410 1560 112 11 683 2231 16462294 16463842 0.000000e+00 2119
4 TraesCS1A01G041600 chr1B 97.938 97 2 0 246 342 16462193 16462289 3.810000e-38 169
5 TraesCS1A01G041600 chr1D 88.906 658 55 7 798 1445 10955773 10956422 0.000000e+00 795
6 TraesCS1A01G041600 chr1D 93.878 343 16 4 337 679 131288927 131289264 1.530000e-141 512
7 TraesCS1A01G041600 chr1D 90.258 349 25 6 1 347 188444516 188444175 4.370000e-122 448
8 TraesCS1A01G041600 chr1D 89.826 344 33 2 1 342 33580303 33580646 7.310000e-120 440
9 TraesCS1A01G041600 chr1D 89.823 226 15 4 123 342 391288644 391288867 1.300000e-72 283
10 TraesCS1A01G041600 chr1D 90.476 126 12 0 1 126 391288337 391288462 1.370000e-37 167
11 TraesCS1A01G041600 chr7D 92.795 347 21 3 338 684 548476237 548476579 1.190000e-137 499
12 TraesCS1A01G041600 chr7D 84.173 139 19 3 4 142 197929546 197929681 5.000000e-27 132
13 TraesCS1A01G041600 chr5B 92.113 355 22 5 337 689 423738800 423739150 1.540000e-136 496
14 TraesCS1A01G041600 chr3D 93.195 338 21 1 342 679 85883076 85882741 1.540000e-136 496
15 TraesCS1A01G041600 chr3D 86.667 345 31 12 1 342 458297006 458296674 3.500000e-98 368
16 TraesCS1A01G041600 chr2D 92.962 341 22 1 344 684 14100511 14100849 1.540000e-136 496
17 TraesCS1A01G041600 chr6B 92.442 344 24 1 344 687 55266927 55267268 7.160000e-135 490
18 TraesCS1A01G041600 chr2A 92.000 350 25 2 338 687 27650730 27651076 2.570000e-134 488
19 TraesCS1A01G041600 chr2B 89.474 342 28 3 1 340 636759663 636759328 2.050000e-115 425
20 TraesCS1A01G041600 chr2B 92.105 114 9 0 686 799 636759318 636759205 6.380000e-36 161
21 TraesCS1A01G041600 chr7B 88.822 331 30 4 1 329 94809766 94809441 1.240000e-107 399
22 TraesCS1A01G041600 chr7A 86.835 357 32 6 1 342 706428383 706428739 3.480000e-103 385
23 TraesCS1A01G041600 chr7A 90.351 114 11 0 683 796 706428744 706428857 1.380000e-32 150


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G041600 chr1A 22658754 22660984 2230 True 4120 4120 100.0000 1 2231 1 chr1A.!!$R1 2230
1 TraesCS1A01G041600 chr1B 16462193 16463842 1649 False 1144 2119 94.6740 246 2231 2 chr1B.!!$F1 1985
2 TraesCS1A01G041600 chr1D 10955773 10956422 649 False 795 795 88.9060 798 1445 1 chr1D.!!$F1 647
3 TraesCS1A01G041600 chr1D 391288337 391288867 530 False 225 283 90.1495 1 342 2 chr1D.!!$F4 341

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
513 705 0.029035 GCAGATTTCATGAGCTGGCG 59.971 55.0 18.18 1.58 0.0 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1571 1776 0.179032 AACAACAGCGGACATGGTCA 60.179 50.0 0.0 0.0 33.68 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 0.874175 CGAGTGTTGCTGACCGTTGA 60.874 55.000 0.00 0.00 0.00 3.18
95 96 6.444704 TCTAGAGGATTCTATGGTTGGACTT 58.555 40.000 0.00 0.00 35.43 3.01
97 98 8.235230 TCTAGAGGATTCTATGGTTGGACTTAT 58.765 37.037 0.00 0.00 35.43 1.73
98 99 9.535170 CTAGAGGATTCTATGGTTGGACTTATA 57.465 37.037 0.00 0.00 35.43 0.98
139 325 8.392612 TGCACAAAACTTAAAGTACACTTCTAC 58.607 33.333 0.00 0.00 34.61 2.59
162 348 7.939784 ACTTTATTCCAAACTCTTCCATACC 57.060 36.000 0.00 0.00 0.00 2.73
208 399 7.111247 TCTGTCCAAACTGTCATTCATTTTT 57.889 32.000 0.00 0.00 28.69 1.94
209 400 8.231692 TCTGTCCAAACTGTCATTCATTTTTA 57.768 30.769 0.00 0.00 28.69 1.52
210 401 8.134895 TCTGTCCAAACTGTCATTCATTTTTAC 58.865 33.333 0.00 0.00 28.69 2.01
212 403 8.134895 TGTCCAAACTGTCATTCATTTTTACTC 58.865 33.333 0.00 0.00 28.69 2.59
213 404 8.352942 GTCCAAACTGTCATTCATTTTTACTCT 58.647 33.333 0.00 0.00 28.69 3.24
214 405 8.352201 TCCAAACTGTCATTCATTTTTACTCTG 58.648 33.333 0.00 0.00 28.69 3.35
215 406 8.137437 CCAAACTGTCATTCATTTTTACTCTGT 58.863 33.333 0.00 0.00 28.69 3.41
307 499 8.258007 CCAGAATAGATACCTAGACAAAACACA 58.742 37.037 0.00 0.00 0.00 3.72
319 511 8.755941 CCTAGACAAAACACACTCGATATATTG 58.244 37.037 0.00 0.00 0.00 1.90
351 543 8.147642 GCTTTTGCATCTTATACATCACTAGT 57.852 34.615 0.00 0.00 46.58 2.57
352 544 9.261180 GCTTTTGCATCTTATACATCACTAGTA 57.739 33.333 0.00 0.00 46.58 1.82
365 557 7.925703 ACATCACTAGTAATAATGTACGTGC 57.074 36.000 0.00 0.00 0.00 5.34
366 558 7.485810 ACATCACTAGTAATAATGTACGTGCA 58.514 34.615 9.28 9.28 0.00 4.57
367 559 7.977293 ACATCACTAGTAATAATGTACGTGCAA 59.023 33.333 11.22 0.00 0.00 4.08
368 560 8.978539 CATCACTAGTAATAATGTACGTGCAAT 58.021 33.333 11.22 4.67 0.00 3.56
369 561 8.347729 TCACTAGTAATAATGTACGTGCAATG 57.652 34.615 11.22 0.00 0.00 2.82
370 562 7.042992 TCACTAGTAATAATGTACGTGCAATGC 60.043 37.037 11.22 0.00 0.00 3.56
371 563 6.759356 ACTAGTAATAATGTACGTGCAATGCA 59.241 34.615 11.22 2.72 35.60 3.96
372 564 6.618287 AGTAATAATGTACGTGCAATGCAT 57.382 33.333 12.38 0.00 41.91 3.96
384 576 6.916401 CGTGCAATGCATGTTTATATTAGG 57.084 37.500 18.55 0.00 41.91 2.69
385 577 6.437928 CGTGCAATGCATGTTTATATTAGGT 58.562 36.000 18.55 0.00 41.91 3.08
386 578 7.580600 CGTGCAATGCATGTTTATATTAGGTA 58.419 34.615 18.55 0.00 41.91 3.08
387 579 7.746034 CGTGCAATGCATGTTTATATTAGGTAG 59.254 37.037 18.55 0.00 41.91 3.18
388 580 8.023128 GTGCAATGCATGTTTATATTAGGTAGG 58.977 37.037 12.38 0.00 41.91 3.18
389 581 7.941790 TGCAATGCATGTTTATATTAGGTAGGA 59.058 33.333 2.72 0.00 31.71 2.94
390 582 8.960591 GCAATGCATGTTTATATTAGGTAGGAT 58.039 33.333 0.00 0.00 0.00 3.24
432 624 8.988064 ATTAGGTAAGATATATCTGTTGCACG 57.012 34.615 16.01 0.00 37.19 5.34
433 625 6.406692 AGGTAAGATATATCTGTTGCACGT 57.593 37.500 16.01 8.08 37.19 4.49
434 626 6.817184 AGGTAAGATATATCTGTTGCACGTT 58.183 36.000 16.01 0.00 37.19 3.99
435 627 6.701841 AGGTAAGATATATCTGTTGCACGTTG 59.298 38.462 16.01 0.00 37.19 4.10
436 628 6.700081 GGTAAGATATATCTGTTGCACGTTGA 59.300 38.462 16.01 0.00 37.19 3.18
437 629 7.385205 GGTAAGATATATCTGTTGCACGTTGAT 59.615 37.037 16.01 0.00 37.19 2.57
438 630 9.406828 GTAAGATATATCTGTTGCACGTTGATA 57.593 33.333 16.01 0.00 37.19 2.15
440 632 9.494271 AAGATATATCTGTTGCACGTTGATATT 57.506 29.630 16.01 0.00 37.19 1.28
441 633 9.494271 AGATATATCTGTTGCACGTTGATATTT 57.506 29.630 14.60 7.77 35.42 1.40
442 634 9.533983 GATATATCTGTTGCACGTTGATATTTG 57.466 33.333 5.42 0.00 33.84 2.32
443 635 4.418013 TCTGTTGCACGTTGATATTTGG 57.582 40.909 0.00 0.00 0.00 3.28
444 636 3.818210 TCTGTTGCACGTTGATATTTGGT 59.182 39.130 0.00 0.00 0.00 3.67
445 637 4.998033 TCTGTTGCACGTTGATATTTGGTA 59.002 37.500 0.00 0.00 0.00 3.25
446 638 5.470437 TCTGTTGCACGTTGATATTTGGTAA 59.530 36.000 0.00 0.00 0.00 2.85
447 639 5.694816 TGTTGCACGTTGATATTTGGTAAG 58.305 37.500 0.00 0.00 0.00 2.34
448 640 5.470437 TGTTGCACGTTGATATTTGGTAAGA 59.530 36.000 0.00 0.00 0.00 2.10
449 641 6.150307 TGTTGCACGTTGATATTTGGTAAGAT 59.850 34.615 0.00 0.00 0.00 2.40
450 642 7.334671 TGTTGCACGTTGATATTTGGTAAGATA 59.665 33.333 0.00 0.00 0.00 1.98
451 643 8.342634 GTTGCACGTTGATATTTGGTAAGATAT 58.657 33.333 0.00 0.00 0.00 1.63
452 644 8.445275 TGCACGTTGATATTTGGTAAGATATT 57.555 30.769 0.00 0.00 0.00 1.28
453 645 9.549078 TGCACGTTGATATTTGGTAAGATATTA 57.451 29.630 0.00 0.00 0.00 0.98
479 671 1.455248 TTTTTCGCGGGAATGGTAGG 58.545 50.000 16.24 0.00 30.88 3.18
480 672 0.614294 TTTTCGCGGGAATGGTAGGA 59.386 50.000 16.24 0.00 30.88 2.94
481 673 0.834612 TTTCGCGGGAATGGTAGGAT 59.165 50.000 16.24 0.00 30.88 3.24
482 674 1.707106 TTCGCGGGAATGGTAGGATA 58.293 50.000 11.32 0.00 0.00 2.59
483 675 1.933021 TCGCGGGAATGGTAGGATAT 58.067 50.000 6.13 0.00 0.00 1.63
484 676 2.253610 TCGCGGGAATGGTAGGATATT 58.746 47.619 6.13 0.00 0.00 1.28
485 677 3.433343 TCGCGGGAATGGTAGGATATTA 58.567 45.455 6.13 0.00 0.00 0.98
486 678 3.833650 TCGCGGGAATGGTAGGATATTAA 59.166 43.478 6.13 0.00 0.00 1.40
487 679 4.468510 TCGCGGGAATGGTAGGATATTAAT 59.531 41.667 6.13 0.00 0.00 1.40
488 680 5.046159 TCGCGGGAATGGTAGGATATTAATT 60.046 40.000 6.13 0.00 0.00 1.40
489 681 6.154877 TCGCGGGAATGGTAGGATATTAATTA 59.845 38.462 6.13 0.00 0.00 1.40
490 682 6.257193 CGCGGGAATGGTAGGATATTAATTAC 59.743 42.308 0.00 0.00 0.00 1.89
491 683 7.107542 GCGGGAATGGTAGGATATTAATTACA 58.892 38.462 0.00 0.00 0.00 2.41
492 684 7.773690 GCGGGAATGGTAGGATATTAATTACAT 59.226 37.037 0.00 0.00 0.00 2.29
493 685 9.109393 CGGGAATGGTAGGATATTAATTACATG 57.891 37.037 0.00 0.00 0.00 3.21
494 686 9.408648 GGGAATGGTAGGATATTAATTACATGG 57.591 37.037 0.00 0.00 0.00 3.66
495 687 8.903820 GGAATGGTAGGATATTAATTACATGGC 58.096 37.037 0.00 0.00 0.00 4.40
496 688 9.461312 GAATGGTAGGATATTAATTACATGGCA 57.539 33.333 0.00 0.00 0.00 4.92
497 689 9.466497 AATGGTAGGATATTAATTACATGGCAG 57.534 33.333 0.00 0.00 0.00 4.85
498 690 8.213489 TGGTAGGATATTAATTACATGGCAGA 57.787 34.615 0.00 0.00 0.00 4.26
499 691 8.835734 TGGTAGGATATTAATTACATGGCAGAT 58.164 33.333 0.00 0.00 0.00 2.90
500 692 9.686683 GGTAGGATATTAATTACATGGCAGATT 57.313 33.333 0.00 0.00 0.00 2.40
503 695 9.812347 AGGATATTAATTACATGGCAGATTTCA 57.188 29.630 0.00 0.00 0.00 2.69
508 700 4.906065 TTACATGGCAGATTTCATGAGC 57.094 40.909 9.84 0.00 42.25 4.26
509 701 3.014304 ACATGGCAGATTTCATGAGCT 57.986 42.857 9.84 0.00 42.25 4.09
510 702 2.688446 ACATGGCAGATTTCATGAGCTG 59.312 45.455 14.44 14.44 42.25 4.24
511 703 1.758936 TGGCAGATTTCATGAGCTGG 58.241 50.000 18.18 2.92 0.00 4.85
512 704 0.384669 GGCAGATTTCATGAGCTGGC 59.615 55.000 23.16 23.16 44.71 4.85
513 705 0.029035 GCAGATTTCATGAGCTGGCG 59.971 55.000 18.18 1.58 0.00 5.69
514 706 1.376543 CAGATTTCATGAGCTGGCGT 58.623 50.000 12.09 0.00 0.00 5.68
515 707 1.741706 CAGATTTCATGAGCTGGCGTT 59.258 47.619 12.09 0.00 0.00 4.84
516 708 1.741706 AGATTTCATGAGCTGGCGTTG 59.258 47.619 0.00 0.00 0.00 4.10
517 709 1.739466 GATTTCATGAGCTGGCGTTGA 59.261 47.619 0.00 0.00 0.00 3.18
518 710 1.159285 TTTCATGAGCTGGCGTTGAG 58.841 50.000 0.00 0.00 0.00 3.02
519 711 0.035317 TTCATGAGCTGGCGTTGAGT 59.965 50.000 0.00 0.00 0.00 3.41
520 712 0.390340 TCATGAGCTGGCGTTGAGTC 60.390 55.000 0.00 0.00 0.00 3.36
521 713 0.671472 CATGAGCTGGCGTTGAGTCA 60.671 55.000 0.00 0.00 0.00 3.41
522 714 0.035317 ATGAGCTGGCGTTGAGTCAA 59.965 50.000 0.08 0.08 31.91 3.18
523 715 0.179059 TGAGCTGGCGTTGAGTCAAA 60.179 50.000 7.25 0.00 31.91 2.69
524 716 0.944386 GAGCTGGCGTTGAGTCAAAA 59.056 50.000 7.25 0.00 31.91 2.44
525 717 0.663153 AGCTGGCGTTGAGTCAAAAC 59.337 50.000 7.25 2.41 31.91 2.43
537 729 8.131082 CGTTGAGTCAAAACGTGTTTATAATC 57.869 34.615 7.25 0.48 44.07 1.75
538 730 7.794810 CGTTGAGTCAAAACGTGTTTATAATCA 59.205 33.333 7.25 2.89 44.07 2.57
539 731 9.440784 GTTGAGTCAAAACGTGTTTATAATCAA 57.559 29.630 7.25 13.88 33.33 2.57
541 733 9.605955 TGAGTCAAAACGTGTTTATAATCAATG 57.394 29.630 0.00 0.00 31.63 2.82
542 734 8.964420 AGTCAAAACGTGTTTATAATCAATGG 57.036 30.769 0.00 0.00 31.63 3.16
543 735 7.540745 AGTCAAAACGTGTTTATAATCAATGGC 59.459 33.333 0.00 0.00 31.63 4.40
544 736 7.327275 GTCAAAACGTGTTTATAATCAATGGCA 59.673 33.333 0.00 0.00 31.63 4.92
545 737 7.540400 TCAAAACGTGTTTATAATCAATGGCAG 59.460 33.333 0.00 0.00 31.63 4.85
546 738 6.509418 AACGTGTTTATAATCAATGGCAGT 57.491 33.333 0.00 0.00 0.00 4.40
547 739 5.879237 ACGTGTTTATAATCAATGGCAGTG 58.121 37.500 8.96 8.96 0.00 3.66
548 740 5.163663 ACGTGTTTATAATCAATGGCAGTGG 60.164 40.000 15.62 0.00 0.00 4.00
549 741 5.163663 CGTGTTTATAATCAATGGCAGTGGT 60.164 40.000 15.62 4.62 0.00 4.16
550 742 6.035843 GTGTTTATAATCAATGGCAGTGGTG 58.964 40.000 15.62 0.00 0.00 4.17
551 743 5.126869 TGTTTATAATCAATGGCAGTGGTGG 59.873 40.000 15.62 0.00 0.00 4.61
552 744 2.142356 TAATCAATGGCAGTGGTGGG 57.858 50.000 15.62 0.00 0.00 4.61
553 745 0.114954 AATCAATGGCAGTGGTGGGT 59.885 50.000 15.62 0.00 0.00 4.51
554 746 0.998928 ATCAATGGCAGTGGTGGGTA 59.001 50.000 15.62 0.00 0.00 3.69
555 747 0.774276 TCAATGGCAGTGGTGGGTAA 59.226 50.000 15.62 0.00 0.00 2.85
556 748 1.357420 TCAATGGCAGTGGTGGGTAAT 59.643 47.619 15.62 0.00 0.00 1.89
557 749 2.178580 CAATGGCAGTGGTGGGTAATT 58.821 47.619 7.12 0.00 0.00 1.40
558 750 3.010696 TCAATGGCAGTGGTGGGTAATTA 59.989 43.478 15.62 0.00 0.00 1.40
559 751 2.799126 TGGCAGTGGTGGGTAATTAG 57.201 50.000 0.00 0.00 0.00 1.73
560 752 2.270858 TGGCAGTGGTGGGTAATTAGA 58.729 47.619 0.00 0.00 0.00 2.10
561 753 2.238646 TGGCAGTGGTGGGTAATTAGAG 59.761 50.000 0.00 0.00 0.00 2.43
562 754 2.289565 GCAGTGGTGGGTAATTAGAGC 58.710 52.381 0.00 0.00 0.00 4.09
563 755 2.550978 CAGTGGTGGGTAATTAGAGCG 58.449 52.381 0.00 0.00 0.00 5.03
564 756 2.093658 CAGTGGTGGGTAATTAGAGCGT 60.094 50.000 0.00 0.00 0.00 5.07
565 757 2.570302 AGTGGTGGGTAATTAGAGCGTT 59.430 45.455 0.00 0.00 0.00 4.84
566 758 3.770933 AGTGGTGGGTAATTAGAGCGTTA 59.229 43.478 0.00 0.00 0.00 3.18
567 759 4.223477 AGTGGTGGGTAATTAGAGCGTTAA 59.777 41.667 0.00 0.00 0.00 2.01
568 760 4.937015 GTGGTGGGTAATTAGAGCGTTAAA 59.063 41.667 0.00 0.00 0.00 1.52
569 761 4.937015 TGGTGGGTAATTAGAGCGTTAAAC 59.063 41.667 0.00 0.00 0.00 2.01
570 762 4.033243 GGTGGGTAATTAGAGCGTTAAACG 59.967 45.833 0.00 0.00 45.88 3.60
571 763 4.627035 GTGGGTAATTAGAGCGTTAAACGT 59.373 41.667 0.00 0.00 44.73 3.99
572 764 4.626604 TGGGTAATTAGAGCGTTAAACGTG 59.373 41.667 0.00 0.00 44.73 4.49
573 765 4.627035 GGGTAATTAGAGCGTTAAACGTGT 59.373 41.667 0.00 0.00 44.73 4.49
574 766 5.120674 GGGTAATTAGAGCGTTAAACGTGTT 59.879 40.000 0.00 0.00 44.73 3.32
575 767 6.347644 GGGTAATTAGAGCGTTAAACGTGTTT 60.348 38.462 3.21 3.21 44.73 2.83
576 768 7.148656 GGGTAATTAGAGCGTTAAACGTGTTTA 60.149 37.037 1.18 1.18 44.73 2.01
577 769 7.894753 GGTAATTAGAGCGTTAAACGTGTTTAG 59.105 37.037 5.45 0.00 44.73 1.85
578 770 7.412137 AATTAGAGCGTTAAACGTGTTTAGT 57.588 32.000 5.45 0.00 44.73 2.24
579 771 4.703899 AGAGCGTTAAACGTGTTTAGTG 57.296 40.909 5.45 4.19 44.73 2.74
580 772 3.060070 AGAGCGTTAAACGTGTTTAGTGC 60.060 43.478 16.65 16.65 44.73 4.40
581 773 2.867975 AGCGTTAAACGTGTTTAGTGCT 59.132 40.909 19.29 19.29 44.73 4.40
582 774 3.060070 AGCGTTAAACGTGTTTAGTGCTC 60.060 43.478 19.29 6.67 44.73 4.26
583 775 3.302610 GCGTTAAACGTGTTTAGTGCTCA 60.303 43.478 16.91 0.00 44.73 4.26
584 776 4.782822 GCGTTAAACGTGTTTAGTGCTCAA 60.783 41.667 16.91 0.00 44.73 3.02
585 777 4.663091 CGTTAAACGTGTTTAGTGCTCAAC 59.337 41.667 5.45 1.42 36.52 3.18
586 778 5.561993 GTTAAACGTGTTTAGTGCTCAACA 58.438 37.500 5.45 0.00 36.52 3.33
587 779 4.893424 AAACGTGTTTAGTGCTCAACAT 57.107 36.364 0.00 0.00 35.40 2.71
588 780 4.893424 AACGTGTTTAGTGCTCAACATT 57.107 36.364 2.80 0.00 35.40 2.71
589 781 4.209452 ACGTGTTTAGTGCTCAACATTG 57.791 40.909 2.80 2.48 35.40 2.82
590 782 3.003275 ACGTGTTTAGTGCTCAACATTGG 59.997 43.478 2.80 0.10 35.40 3.16
591 783 3.249799 CGTGTTTAGTGCTCAACATTGGA 59.750 43.478 2.80 0.00 35.40 3.53
592 784 4.611355 CGTGTTTAGTGCTCAACATTGGAG 60.611 45.833 2.80 0.00 35.40 3.86
599 791 2.726555 CTCAACATTGGAGCGATTCG 57.273 50.000 0.62 0.62 0.00 3.34
600 792 2.270923 CTCAACATTGGAGCGATTCGA 58.729 47.619 10.88 0.00 0.00 3.71
601 793 2.672874 CTCAACATTGGAGCGATTCGAA 59.327 45.455 10.88 0.00 0.00 3.71
602 794 2.415168 TCAACATTGGAGCGATTCGAAC 59.585 45.455 10.88 2.39 0.00 3.95
603 795 1.369625 ACATTGGAGCGATTCGAACC 58.630 50.000 10.88 12.00 0.00 3.62
604 796 1.338674 ACATTGGAGCGATTCGAACCA 60.339 47.619 10.88 14.40 33.72 3.67
605 797 1.062587 CATTGGAGCGATTCGAACCAC 59.937 52.381 18.98 0.00 34.75 4.16
606 798 0.320374 TTGGAGCGATTCGAACCACT 59.680 50.000 18.98 0.00 34.75 4.00
607 799 1.179152 TGGAGCGATTCGAACCACTA 58.821 50.000 10.88 0.00 31.66 2.74
608 800 1.134367 TGGAGCGATTCGAACCACTAG 59.866 52.381 10.88 0.00 31.66 2.57
609 801 1.404391 GGAGCGATTCGAACCACTAGA 59.596 52.381 10.88 0.00 0.00 2.43
610 802 2.034812 GGAGCGATTCGAACCACTAGAT 59.965 50.000 10.88 0.00 0.00 1.98
611 803 3.301706 GAGCGATTCGAACCACTAGATC 58.698 50.000 10.88 0.00 0.00 2.75
612 804 2.688446 AGCGATTCGAACCACTAGATCA 59.312 45.455 10.88 0.00 0.00 2.92
613 805 2.789893 GCGATTCGAACCACTAGATCAC 59.210 50.000 10.88 0.00 0.00 3.06
614 806 3.733988 GCGATTCGAACCACTAGATCACA 60.734 47.826 10.88 0.00 0.00 3.58
615 807 4.611943 CGATTCGAACCACTAGATCACAT 58.388 43.478 0.00 0.00 0.00 3.21
616 808 4.442403 CGATTCGAACCACTAGATCACATG 59.558 45.833 0.00 0.00 0.00 3.21
617 809 5.592054 GATTCGAACCACTAGATCACATGA 58.408 41.667 0.00 0.00 0.00 3.07
618 810 5.598416 TTCGAACCACTAGATCACATGAT 57.402 39.130 0.00 0.00 37.51 2.45
619 811 6.709018 TTCGAACCACTAGATCACATGATA 57.291 37.500 0.00 0.00 34.37 2.15
620 812 6.901081 TCGAACCACTAGATCACATGATAT 57.099 37.500 0.00 0.00 34.37 1.63
621 813 7.290110 TCGAACCACTAGATCACATGATATT 57.710 36.000 0.00 0.00 34.37 1.28
622 814 7.726216 TCGAACCACTAGATCACATGATATTT 58.274 34.615 0.00 0.00 34.37 1.40
623 815 7.653311 TCGAACCACTAGATCACATGATATTTG 59.347 37.037 0.00 0.00 34.37 2.32
624 816 7.653311 CGAACCACTAGATCACATGATATTTGA 59.347 37.037 0.00 0.00 34.37 2.69
625 817 8.668510 AACCACTAGATCACATGATATTTGAC 57.331 34.615 0.00 0.00 34.37 3.18
626 818 6.925718 ACCACTAGATCACATGATATTTGACG 59.074 38.462 0.00 0.00 34.37 4.35
627 819 6.367149 CCACTAGATCACATGATATTTGACGG 59.633 42.308 0.00 0.00 34.37 4.79
628 820 6.925718 CACTAGATCACATGATATTTGACGGT 59.074 38.462 0.00 0.00 34.37 4.83
629 821 7.439356 CACTAGATCACATGATATTTGACGGTT 59.561 37.037 0.00 0.00 34.37 4.44
630 822 6.609237 AGATCACATGATATTTGACGGTTG 57.391 37.500 0.00 0.00 34.37 3.77
631 823 6.348498 AGATCACATGATATTTGACGGTTGA 58.652 36.000 0.00 0.00 34.37 3.18
632 824 6.481313 AGATCACATGATATTTGACGGTTGAG 59.519 38.462 0.00 0.00 34.37 3.02
633 825 5.729510 TCACATGATATTTGACGGTTGAGA 58.270 37.500 0.00 0.00 0.00 3.27
634 826 6.348498 TCACATGATATTTGACGGTTGAGAT 58.652 36.000 0.00 0.00 0.00 2.75
635 827 6.258507 TCACATGATATTTGACGGTTGAGATG 59.741 38.462 0.00 0.00 0.00 2.90
636 828 5.528690 ACATGATATTTGACGGTTGAGATGG 59.471 40.000 0.00 0.00 0.00 3.51
637 829 5.097742 TGATATTTGACGGTTGAGATGGT 57.902 39.130 0.00 0.00 0.00 3.55
638 830 5.496556 TGATATTTGACGGTTGAGATGGTT 58.503 37.500 0.00 0.00 0.00 3.67
639 831 5.943416 TGATATTTGACGGTTGAGATGGTTT 59.057 36.000 0.00 0.00 0.00 3.27
640 832 3.980646 TTTGACGGTTGAGATGGTTTG 57.019 42.857 0.00 0.00 0.00 2.93
641 833 2.920724 TGACGGTTGAGATGGTTTGA 57.079 45.000 0.00 0.00 0.00 2.69
642 834 3.201353 TGACGGTTGAGATGGTTTGAA 57.799 42.857 0.00 0.00 0.00 2.69
643 835 3.750371 TGACGGTTGAGATGGTTTGAAT 58.250 40.909 0.00 0.00 0.00 2.57
644 836 3.751175 TGACGGTTGAGATGGTTTGAATC 59.249 43.478 0.00 0.00 0.00 2.52
645 837 4.003648 GACGGTTGAGATGGTTTGAATCT 58.996 43.478 0.00 0.00 37.09 2.40
646 838 3.753272 ACGGTTGAGATGGTTTGAATCTG 59.247 43.478 0.00 0.00 34.50 2.90
647 839 3.426695 CGGTTGAGATGGTTTGAATCTGC 60.427 47.826 0.00 0.00 34.50 4.26
648 840 3.119352 GGTTGAGATGGTTTGAATCTGCC 60.119 47.826 0.00 0.00 34.50 4.85
649 841 2.726821 TGAGATGGTTTGAATCTGCCC 58.273 47.619 0.00 0.00 34.50 5.36
650 842 2.027385 GAGATGGTTTGAATCTGCCCC 58.973 52.381 0.00 0.00 34.50 5.80
651 843 1.642762 AGATGGTTTGAATCTGCCCCT 59.357 47.619 0.00 0.00 33.08 4.79
652 844 2.043526 AGATGGTTTGAATCTGCCCCTT 59.956 45.455 0.00 0.00 33.08 3.95
653 845 2.397044 TGGTTTGAATCTGCCCCTTT 57.603 45.000 0.00 0.00 0.00 3.11
654 846 1.969923 TGGTTTGAATCTGCCCCTTTG 59.030 47.619 0.00 0.00 0.00 2.77
655 847 1.276138 GGTTTGAATCTGCCCCTTTGG 59.724 52.381 0.00 0.00 37.09 3.28
671 863 6.867519 CCCTTTGGGTCTTTTTATATTGGT 57.132 37.500 0.00 0.00 38.25 3.67
672 864 7.964666 CCCTTTGGGTCTTTTTATATTGGTA 57.035 36.000 0.00 0.00 38.25 3.25
673 865 8.547481 CCCTTTGGGTCTTTTTATATTGGTAT 57.453 34.615 0.00 0.00 38.25 2.73
674 866 9.649316 CCCTTTGGGTCTTTTTATATTGGTATA 57.351 33.333 0.00 0.00 38.25 1.47
709 901 3.173953 TGCCTCACAATTCCATTTCCT 57.826 42.857 0.00 0.00 0.00 3.36
749 942 9.920946 ACAATAACAATATGTCTATCTTGGGTT 57.079 29.630 0.00 0.00 0.00 4.11
859 1057 5.163854 CGATCAATTAACAAGCTCGAGGTTT 60.164 40.000 26.38 16.00 32.86 3.27
871 1069 5.974108 AGCTCGAGGTTTATTTAGCTACAA 58.026 37.500 12.24 0.00 38.48 2.41
898 1098 4.298626 AGTATCCCATCTAGCCTTTGTCA 58.701 43.478 0.00 0.00 0.00 3.58
938 1138 8.986477 AGTTAGCATTGGTAAATTTTGCTTAG 57.014 30.769 17.02 0.00 43.08 2.18
941 1141 9.771534 TTAGCATTGGTAAATTTTGCTTAGTTT 57.228 25.926 17.02 0.00 43.08 2.66
950 1150 9.900264 GTAAATTTTGCTTAGTTTGAAACACAG 57.100 29.630 11.02 6.50 0.00 3.66
996 1196 1.075542 TTTTGTAGCGTGCCAGATCG 58.924 50.000 0.00 0.00 0.00 3.69
1010 1210 1.269174 CAGATCGACGATGAGCTCCAT 59.731 52.381 16.49 4.76 38.43 3.41
1025 1225 2.747022 CATGGACGACACCACCCA 59.253 61.111 0.00 0.00 43.03 4.51
1038 1238 1.693640 CACCCATGGAGGCCTCTTT 59.306 57.895 31.36 16.69 35.39 2.52
1118 1318 4.511527 GAGATCATTCTCAAGGACAAGCA 58.488 43.478 0.00 0.00 46.49 3.91
1122 1322 4.851843 TCATTCTCAAGGACAAGCATGAT 58.148 39.130 0.00 0.00 0.00 2.45
1180 1380 0.040204 CCTGGACTTGAGGCCCAAAT 59.960 55.000 0.00 0.00 33.76 2.32
1187 1387 1.470996 TTGAGGCCCAAATGTGTGCC 61.471 55.000 0.16 0.16 44.35 5.01
1197 1397 3.319755 CAAATGTGTGCCCATCTTTGTC 58.680 45.455 0.39 0.00 0.00 3.18
1206 1406 0.790207 CCATCTTTGTCGACACCGTG 59.210 55.000 19.90 14.12 37.05 4.94
1218 1418 3.868985 ACCGTGGCCGAAACACCT 61.869 61.111 0.00 0.00 35.46 4.00
1221 1421 1.730451 CCGTGGCCGAAACACCTTTT 61.730 55.000 0.00 0.00 35.46 2.27
1248 1448 1.885871 GGCAGCTTTGTAGGCCAAG 59.114 57.895 5.01 0.00 45.70 3.61
1326 1526 1.374343 AATGCAGGCATGTCGAGCAG 61.374 55.000 21.58 0.49 38.75 4.24
1343 1548 1.154197 CAGTAGCATGGCATGGATCG 58.846 55.000 27.48 3.42 0.00 3.69
1367 1572 6.248420 CGCTACTTATGTGTATGTTTTTGCAC 59.752 38.462 0.00 0.00 0.00 4.57
1372 1577 8.625651 ACTTATGTGTATGTTTTTGCACTGTAA 58.374 29.630 0.00 0.00 33.44 2.41
1394 1599 9.219603 TGTAATTTTAGTTTGATGAGAGAGTGG 57.780 33.333 0.00 0.00 0.00 4.00
1401 1606 5.362430 AGTTTGATGAGAGAGTGGTAGATCC 59.638 44.000 0.00 0.00 0.00 3.36
1456 1661 1.816679 GAGTGGCATGCGCAGATGA 60.817 57.895 18.32 0.00 41.24 2.92
1461 1666 1.094073 GGCATGCGCAGATGAAGTCT 61.094 55.000 18.32 0.00 41.24 3.24
1473 1678 4.878397 CAGATGAAGTCTATTTGGTGTCCC 59.122 45.833 0.00 0.00 34.69 4.46
1478 1683 3.256704 AGTCTATTTGGTGTCCCCTTCA 58.743 45.455 0.00 0.00 0.00 3.02
1497 1702 3.540617 TCAACCGGATTCATACATGTGG 58.459 45.455 9.46 0.30 0.00 4.17
1499 1704 1.490490 ACCGGATTCATACATGTGGCT 59.510 47.619 9.46 0.00 0.00 4.75
1512 1717 4.159557 ACATGTGGCTGGAAAAACCTATT 58.840 39.130 0.00 0.00 39.86 1.73
1541 1746 9.461312 AATGACTTAAGCTATAAAATGTCACCA 57.539 29.630 1.29 0.00 36.28 4.17
1571 1776 6.350612 GCTTCTAGAGTTCTTACATGGACTGT 60.351 42.308 0.00 0.00 42.13 3.55
1576 1781 3.646162 AGTTCTTACATGGACTGTGACCA 59.354 43.478 0.00 0.00 38.92 4.02
1606 1811 6.077197 GCTGTTGTTTTGTTTTGTTTTCTCC 58.923 36.000 0.00 0.00 0.00 3.71
1611 1816 9.165014 GTTGTTTTGTTTTGTTTTCTCCTTTTC 57.835 29.630 0.00 0.00 0.00 2.29
1612 1817 7.866729 TGTTTTGTTTTGTTTTCTCCTTTTCC 58.133 30.769 0.00 0.00 0.00 3.13
1613 1818 7.041030 TGTTTTGTTTTGTTTTCTCCTTTTCCC 60.041 33.333 0.00 0.00 0.00 3.97
1630 1835 6.270000 CCTTTTCCCCCTTTCTTTATCTTGTT 59.730 38.462 0.00 0.00 0.00 2.83
1631 1836 7.202093 CCTTTTCCCCCTTTCTTTATCTTGTTT 60.202 37.037 0.00 0.00 0.00 2.83
1632 1837 6.911250 TTCCCCCTTTCTTTATCTTGTTTC 57.089 37.500 0.00 0.00 0.00 2.78
1633 1838 5.330233 TCCCCCTTTCTTTATCTTGTTTCC 58.670 41.667 0.00 0.00 0.00 3.13
1634 1839 5.075900 TCCCCCTTTCTTTATCTTGTTTCCT 59.924 40.000 0.00 0.00 0.00 3.36
1635 1840 5.780282 CCCCCTTTCTTTATCTTGTTTCCTT 59.220 40.000 0.00 0.00 0.00 3.36
1636 1841 6.270000 CCCCCTTTCTTTATCTTGTTTCCTTT 59.730 38.462 0.00 0.00 0.00 3.11
1644 1849 9.853177 TCTTTATCTTGTTTCCTTTCTCTTTCT 57.147 29.630 0.00 0.00 0.00 2.52
1797 2002 7.424803 TCCAGAAATGTGTCAACAACTTAATG 58.575 34.615 0.00 0.00 40.46 1.90
1883 2090 3.320256 CCTCTCCATGAAGATCGTCATCA 59.680 47.826 19.61 9.69 36.04 3.07
1884 2091 4.021280 CCTCTCCATGAAGATCGTCATCAT 60.021 45.833 19.61 10.10 35.45 2.45
1913 2120 1.270305 CCTATCCAATCGACACGCCAT 60.270 52.381 0.00 0.00 0.00 4.40
1916 2123 0.177836 TCCAATCGACACGCCATGAT 59.822 50.000 0.00 0.00 0.00 2.45
1941 2148 6.892485 ACCATCATCATTAGAGACAACATCA 58.108 36.000 0.00 0.00 0.00 3.07
1943 2150 7.498239 ACCATCATCATTAGAGACAACATCAAG 59.502 37.037 0.00 0.00 0.00 3.02
1954 2161 4.003648 GACAACATCAAGTAGAAGTGGGG 58.996 47.826 0.00 0.00 0.00 4.96
1955 2162 2.749621 CAACATCAAGTAGAAGTGGGGC 59.250 50.000 0.00 0.00 0.00 5.80
1962 2169 0.914902 GTAGAAGTGGGGCCCTCCTT 60.915 60.000 25.93 24.09 35.33 3.36
1964 2171 0.178843 AGAAGTGGGGCCCTCCTTTA 60.179 55.000 25.93 0.00 35.33 1.85
2006 2213 2.014010 ACCATTGGCCATTGTGTTCT 57.986 45.000 22.69 1.29 0.00 3.01
2011 2218 2.046285 GGCCATTGTGTTCTCCCCG 61.046 63.158 0.00 0.00 0.00 5.73
2023 2230 0.982852 TCTCCCCGTCTGGCATCATT 60.983 55.000 0.00 0.00 0.00 2.57
2024 2231 0.816825 CTCCCCGTCTGGCATCATTG 60.817 60.000 0.00 0.00 0.00 2.82
2076 2283 8.154856 TGTTATGGATTCTAATACCTAGCCAAC 58.845 37.037 0.00 0.00 0.00 3.77
2080 2287 5.513267 GGATTCTAATACCTAGCCAACCCAG 60.513 48.000 0.00 0.00 0.00 4.45
2094 2301 1.957668 ACCCAGTTGAAACGGTGTAC 58.042 50.000 0.00 0.00 0.00 2.90
2119 2326 7.279313 ACGTCATAAACTATATGGTTTGGTGAC 59.721 37.037 29.89 29.89 43.17 3.67
2127 2334 0.811915 TGGTTTGGTGACGGTTGTTG 59.188 50.000 0.00 0.00 0.00 3.33
2128 2335 0.526739 GGTTTGGTGACGGTTGTTGC 60.527 55.000 0.00 0.00 0.00 4.17
2137 2345 2.750166 TGACGGTTGTTGCTTTTTCAGA 59.250 40.909 0.00 0.00 0.00 3.27
2160 2368 6.991531 AGATTGAAGGAAGCATACTTGATCTC 59.008 38.462 0.00 0.00 35.82 2.75
2161 2369 5.028549 TGAAGGAAGCATACTTGATCTCC 57.971 43.478 0.00 0.00 35.82 3.71
2210 2418 0.538287 GAAGCCCACTGCAACTCCTT 60.538 55.000 0.00 0.00 44.83 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 8.896658 ACCATAGAATCCTCTAGATAGTACACT 58.103 37.037 0.00 0.00 37.58 3.55
77 78 7.074653 TGGTATAAGTCCAACCATAGAATCC 57.925 40.000 0.00 0.00 38.36 3.01
95 96 7.888250 TTGTGCAAAATGTCCATATGGTATA 57.112 32.000 21.28 9.39 36.34 1.47
97 98 6.596309 TTTGTGCAAAATGTCCATATGGTA 57.404 33.333 21.28 12.17 36.34 3.25
98 99 5.480642 TTTGTGCAAAATGTCCATATGGT 57.519 34.783 21.28 0.00 36.34 3.55
139 325 6.889722 TGGGTATGGAAGAGTTTGGAATAAAG 59.110 38.462 0.00 0.00 0.00 1.85
146 332 5.131142 AGAGTATGGGTATGGAAGAGTTTGG 59.869 44.000 0.00 0.00 0.00 3.28
147 333 6.127054 TGAGAGTATGGGTATGGAAGAGTTTG 60.127 42.308 0.00 0.00 0.00 2.93
149 335 5.529289 TGAGAGTATGGGTATGGAAGAGTT 58.471 41.667 0.00 0.00 0.00 3.01
208 399 8.534954 AAGTACATAGCCTTGAATACAGAGTA 57.465 34.615 0.00 0.00 0.00 2.59
209 400 7.425224 AAGTACATAGCCTTGAATACAGAGT 57.575 36.000 0.00 0.00 0.00 3.24
210 401 7.981789 TGAAAGTACATAGCCTTGAATACAGAG 59.018 37.037 0.00 0.00 0.00 3.35
212 403 8.668510 ATGAAAGTACATAGCCTTGAATACAG 57.331 34.615 0.00 0.00 0.00 2.74
218 409 9.851686 ATGATTTATGAAAGTACATAGCCTTGA 57.148 29.630 0.00 0.00 34.80 3.02
307 499 7.618442 CAAAAGCACGTAACAATATATCGAGT 58.382 34.615 0.00 0.00 0.00 4.18
319 511 6.539324 TGTATAAGATGCAAAAGCACGTAAC 58.461 36.000 0.00 0.00 0.00 2.50
342 534 7.924103 TGCACGTACATTATTACTAGTGATG 57.076 36.000 10.28 8.99 0.00 3.07
343 535 8.978539 CATTGCACGTACATTATTACTAGTGAT 58.021 33.333 5.39 5.39 0.00 3.06
347 539 7.172654 TGCATTGCACGTACATTATTACTAG 57.827 36.000 7.38 0.00 31.71 2.57
348 540 7.225734 ACATGCATTGCACGTACATTATTACTA 59.774 33.333 14.66 0.00 43.04 1.82
349 541 6.038161 ACATGCATTGCACGTACATTATTACT 59.962 34.615 14.66 0.00 43.04 2.24
350 542 6.198687 ACATGCATTGCACGTACATTATTAC 58.801 36.000 14.66 0.00 43.04 1.89
351 543 6.370433 ACATGCATTGCACGTACATTATTA 57.630 33.333 14.66 0.00 43.04 0.98
352 544 5.247507 ACATGCATTGCACGTACATTATT 57.752 34.783 14.66 0.00 43.04 1.40
353 545 4.898829 ACATGCATTGCACGTACATTAT 57.101 36.364 14.66 0.00 43.04 1.28
354 546 4.693538 AACATGCATTGCACGTACATTA 57.306 36.364 14.66 0.00 43.04 1.90
355 547 3.574284 AACATGCATTGCACGTACATT 57.426 38.095 14.66 0.00 43.04 2.71
356 548 3.574284 AAACATGCATTGCACGTACAT 57.426 38.095 14.66 0.00 43.04 2.29
357 549 4.693538 ATAAACATGCATTGCACGTACA 57.306 36.364 14.66 3.61 43.04 2.90
358 550 7.533900 CCTAATATAAACATGCATTGCACGTAC 59.466 37.037 14.66 0.00 43.04 3.67
359 551 7.227711 ACCTAATATAAACATGCATTGCACGTA 59.772 33.333 14.66 0.00 43.04 3.57
360 552 6.039270 ACCTAATATAAACATGCATTGCACGT 59.961 34.615 14.66 9.40 43.04 4.49
361 553 6.437928 ACCTAATATAAACATGCATTGCACG 58.562 36.000 14.66 8.59 43.04 5.34
362 554 8.023128 CCTACCTAATATAAACATGCATTGCAC 58.977 37.037 14.66 0.00 43.04 4.57
363 555 7.941790 TCCTACCTAATATAAACATGCATTGCA 59.058 33.333 14.72 14.72 44.86 4.08
364 556 8.335532 TCCTACCTAATATAAACATGCATTGC 57.664 34.615 0.00 0.46 0.00 3.56
407 599 8.585881 ACGTGCAACAGATATATCTTACCTAAT 58.414 33.333 12.75 0.00 35.74 1.73
408 600 7.948357 ACGTGCAACAGATATATCTTACCTAA 58.052 34.615 12.75 0.00 35.74 2.69
409 601 7.520451 ACGTGCAACAGATATATCTTACCTA 57.480 36.000 12.75 0.00 35.74 3.08
410 602 6.406692 ACGTGCAACAGATATATCTTACCT 57.593 37.500 12.75 0.00 35.74 3.08
411 603 6.700081 TCAACGTGCAACAGATATATCTTACC 59.300 38.462 12.75 3.07 35.74 2.85
412 604 7.694388 TCAACGTGCAACAGATATATCTTAC 57.306 36.000 12.75 6.63 35.74 2.34
414 606 9.494271 AATATCAACGTGCAACAGATATATCTT 57.506 29.630 12.75 2.49 35.65 2.40
415 607 9.494271 AAATATCAACGTGCAACAGATATATCT 57.506 29.630 9.57 9.57 35.65 1.98
416 608 9.533983 CAAATATCAACGTGCAACAGATATATC 57.466 33.333 4.42 4.42 35.65 1.63
417 609 8.506437 CCAAATATCAACGTGCAACAGATATAT 58.494 33.333 10.68 0.00 35.65 0.86
418 610 7.497579 ACCAAATATCAACGTGCAACAGATATA 59.502 33.333 10.68 0.00 35.65 0.86
419 611 6.318648 ACCAAATATCAACGTGCAACAGATAT 59.681 34.615 0.00 0.00 37.17 1.63
420 612 5.645929 ACCAAATATCAACGTGCAACAGATA 59.354 36.000 0.00 0.00 35.74 1.98
421 613 4.458989 ACCAAATATCAACGTGCAACAGAT 59.541 37.500 0.00 0.00 35.74 2.90
422 614 3.818210 ACCAAATATCAACGTGCAACAGA 59.182 39.130 0.00 0.00 35.74 3.41
423 615 4.159377 ACCAAATATCAACGTGCAACAG 57.841 40.909 0.00 0.00 35.74 3.16
424 616 5.470437 TCTTACCAAATATCAACGTGCAACA 59.530 36.000 0.00 0.00 35.74 3.33
425 617 5.933790 TCTTACCAAATATCAACGTGCAAC 58.066 37.500 0.00 0.00 0.00 4.17
426 618 6.751514 ATCTTACCAAATATCAACGTGCAA 57.248 33.333 0.00 0.00 0.00 4.08
427 619 8.445275 AATATCTTACCAAATATCAACGTGCA 57.555 30.769 0.00 0.00 0.00 4.57
460 652 1.003349 TCCTACCATTCCCGCGAAAAA 59.997 47.619 8.23 0.00 0.00 1.94
461 653 0.614294 TCCTACCATTCCCGCGAAAA 59.386 50.000 8.23 0.61 0.00 2.29
462 654 0.834612 ATCCTACCATTCCCGCGAAA 59.165 50.000 8.23 1.06 0.00 3.46
463 655 1.707106 TATCCTACCATTCCCGCGAA 58.293 50.000 8.23 0.00 0.00 4.70
464 656 1.933021 ATATCCTACCATTCCCGCGA 58.067 50.000 8.23 0.00 0.00 5.87
465 657 2.762535 AATATCCTACCATTCCCGCG 57.237 50.000 0.00 0.00 0.00 6.46
466 658 7.107542 TGTAATTAATATCCTACCATTCCCGC 58.892 38.462 0.00 0.00 0.00 6.13
467 659 9.109393 CATGTAATTAATATCCTACCATTCCCG 57.891 37.037 0.00 0.00 0.00 5.14
468 660 9.408648 CCATGTAATTAATATCCTACCATTCCC 57.591 37.037 0.00 0.00 0.00 3.97
469 661 8.903820 GCCATGTAATTAATATCCTACCATTCC 58.096 37.037 0.00 0.00 0.00 3.01
470 662 9.461312 TGCCATGTAATTAATATCCTACCATTC 57.539 33.333 0.00 0.00 0.00 2.67
471 663 9.466497 CTGCCATGTAATTAATATCCTACCATT 57.534 33.333 0.00 0.00 0.00 3.16
472 664 8.835734 TCTGCCATGTAATTAATATCCTACCAT 58.164 33.333 0.00 0.00 0.00 3.55
473 665 8.213489 TCTGCCATGTAATTAATATCCTACCA 57.787 34.615 0.00 0.00 0.00 3.25
474 666 9.686683 AATCTGCCATGTAATTAATATCCTACC 57.313 33.333 0.00 0.00 0.00 3.18
477 669 9.812347 TGAAATCTGCCATGTAATTAATATCCT 57.188 29.630 0.00 0.00 0.00 3.24
482 674 8.086522 GCTCATGAAATCTGCCATGTAATTAAT 58.913 33.333 0.00 0.00 40.59 1.40
483 675 7.286087 AGCTCATGAAATCTGCCATGTAATTAA 59.714 33.333 0.00 0.00 40.59 1.40
484 676 6.774170 AGCTCATGAAATCTGCCATGTAATTA 59.226 34.615 0.00 0.00 40.59 1.40
485 677 5.597182 AGCTCATGAAATCTGCCATGTAATT 59.403 36.000 0.00 0.00 40.59 1.40
486 678 5.009710 CAGCTCATGAAATCTGCCATGTAAT 59.990 40.000 0.00 0.00 40.59 1.89
487 679 4.337274 CAGCTCATGAAATCTGCCATGTAA 59.663 41.667 0.00 0.00 40.59 2.41
488 680 3.881089 CAGCTCATGAAATCTGCCATGTA 59.119 43.478 0.00 0.00 40.59 2.29
489 681 2.688446 CAGCTCATGAAATCTGCCATGT 59.312 45.455 0.00 0.00 40.59 3.21
490 682 2.034685 CCAGCTCATGAAATCTGCCATG 59.965 50.000 11.66 0.00 40.97 3.66
491 683 2.307768 CCAGCTCATGAAATCTGCCAT 58.692 47.619 11.66 0.00 0.00 4.40
492 684 1.758936 CCAGCTCATGAAATCTGCCA 58.241 50.000 11.66 0.00 0.00 4.92
493 685 0.384669 GCCAGCTCATGAAATCTGCC 59.615 55.000 11.66 0.81 0.00 4.85
494 686 0.029035 CGCCAGCTCATGAAATCTGC 59.971 55.000 11.66 5.08 0.00 4.26
495 687 1.376543 ACGCCAGCTCATGAAATCTG 58.623 50.000 0.00 4.71 0.00 2.90
496 688 1.741706 CAACGCCAGCTCATGAAATCT 59.258 47.619 0.00 0.00 0.00 2.40
497 689 1.739466 TCAACGCCAGCTCATGAAATC 59.261 47.619 0.00 0.00 0.00 2.17
498 690 1.741706 CTCAACGCCAGCTCATGAAAT 59.258 47.619 0.00 0.00 0.00 2.17
499 691 1.159285 CTCAACGCCAGCTCATGAAA 58.841 50.000 0.00 0.00 0.00 2.69
500 692 0.035317 ACTCAACGCCAGCTCATGAA 59.965 50.000 0.00 0.00 0.00 2.57
501 693 0.390340 GACTCAACGCCAGCTCATGA 60.390 55.000 0.00 0.00 0.00 3.07
502 694 0.671472 TGACTCAACGCCAGCTCATG 60.671 55.000 0.00 0.00 0.00 3.07
503 695 0.035317 TTGACTCAACGCCAGCTCAT 59.965 50.000 0.00 0.00 0.00 2.90
504 696 0.179059 TTTGACTCAACGCCAGCTCA 60.179 50.000 0.00 0.00 0.00 4.26
505 697 0.944386 TTTTGACTCAACGCCAGCTC 59.056 50.000 0.00 0.00 0.00 4.09
506 698 0.663153 GTTTTGACTCAACGCCAGCT 59.337 50.000 0.00 0.00 0.00 4.24
507 699 0.657368 CGTTTTGACTCAACGCCAGC 60.657 55.000 0.00 0.00 40.49 4.85
508 700 3.437845 CGTTTTGACTCAACGCCAG 57.562 52.632 0.00 0.00 40.49 4.85
513 705 8.996988 TGATTATAAACACGTTTTGACTCAAC 57.003 30.769 0.00 0.00 34.23 3.18
515 707 9.605955 CATTGATTATAAACACGTTTTGACTCA 57.394 29.630 0.00 0.00 34.23 3.41
516 708 9.061610 CCATTGATTATAAACACGTTTTGACTC 57.938 33.333 0.00 0.00 34.23 3.36
517 709 7.540745 GCCATTGATTATAAACACGTTTTGACT 59.459 33.333 0.00 0.00 34.23 3.41
518 710 7.327275 TGCCATTGATTATAAACACGTTTTGAC 59.673 33.333 0.00 0.00 34.23 3.18
519 711 7.371159 TGCCATTGATTATAAACACGTTTTGA 58.629 30.769 0.00 0.00 34.23 2.69
520 712 7.328249 ACTGCCATTGATTATAAACACGTTTTG 59.672 33.333 0.00 0.00 34.23 2.44
521 713 7.328249 CACTGCCATTGATTATAAACACGTTTT 59.672 33.333 0.00 0.00 34.23 2.43
522 714 6.806249 CACTGCCATTGATTATAAACACGTTT 59.194 34.615 0.22 0.22 36.63 3.60
523 715 6.321717 CACTGCCATTGATTATAAACACGTT 58.678 36.000 0.00 0.00 0.00 3.99
524 716 5.163663 CCACTGCCATTGATTATAAACACGT 60.164 40.000 0.00 0.00 0.00 4.49
525 717 5.163663 ACCACTGCCATTGATTATAAACACG 60.164 40.000 0.00 0.00 0.00 4.49
526 718 6.035843 CACCACTGCCATTGATTATAAACAC 58.964 40.000 0.00 0.00 0.00 3.32
527 719 5.126869 CCACCACTGCCATTGATTATAAACA 59.873 40.000 0.00 0.00 0.00 2.83
528 720 5.451798 CCCACCACTGCCATTGATTATAAAC 60.452 44.000 0.00 0.00 0.00 2.01
529 721 4.648762 CCCACCACTGCCATTGATTATAAA 59.351 41.667 0.00 0.00 0.00 1.40
530 722 4.214310 CCCACCACTGCCATTGATTATAA 58.786 43.478 0.00 0.00 0.00 0.98
531 723 3.204158 ACCCACCACTGCCATTGATTATA 59.796 43.478 0.00 0.00 0.00 0.98
532 724 2.024080 ACCCACCACTGCCATTGATTAT 60.024 45.455 0.00 0.00 0.00 1.28
533 725 1.357420 ACCCACCACTGCCATTGATTA 59.643 47.619 0.00 0.00 0.00 1.75
534 726 0.114954 ACCCACCACTGCCATTGATT 59.885 50.000 0.00 0.00 0.00 2.57
535 727 0.998928 TACCCACCACTGCCATTGAT 59.001 50.000 0.00 0.00 0.00 2.57
536 728 0.774276 TTACCCACCACTGCCATTGA 59.226 50.000 0.00 0.00 0.00 2.57
537 729 1.851304 ATTACCCACCACTGCCATTG 58.149 50.000 0.00 0.00 0.00 2.82
538 730 2.621556 AATTACCCACCACTGCCATT 57.378 45.000 0.00 0.00 0.00 3.16
539 731 2.849943 TCTAATTACCCACCACTGCCAT 59.150 45.455 0.00 0.00 0.00 4.40
540 732 2.238646 CTCTAATTACCCACCACTGCCA 59.761 50.000 0.00 0.00 0.00 4.92
541 733 2.919228 CTCTAATTACCCACCACTGCC 58.081 52.381 0.00 0.00 0.00 4.85
542 734 2.289565 GCTCTAATTACCCACCACTGC 58.710 52.381 0.00 0.00 0.00 4.40
543 735 2.093658 ACGCTCTAATTACCCACCACTG 60.094 50.000 0.00 0.00 0.00 3.66
544 736 2.185387 ACGCTCTAATTACCCACCACT 58.815 47.619 0.00 0.00 0.00 4.00
545 737 2.685850 ACGCTCTAATTACCCACCAC 57.314 50.000 0.00 0.00 0.00 4.16
546 738 4.822685 TTAACGCTCTAATTACCCACCA 57.177 40.909 0.00 0.00 0.00 4.17
547 739 4.033243 CGTTTAACGCTCTAATTACCCACC 59.967 45.833 4.11 0.00 33.65 4.61
548 740 5.134978 CGTTTAACGCTCTAATTACCCAC 57.865 43.478 4.11 0.00 33.65 4.61
563 755 5.561993 TGTTGAGCACTAAACACGTTTAAC 58.438 37.500 4.10 0.88 34.95 2.01
564 756 5.798015 TGTTGAGCACTAAACACGTTTAA 57.202 34.783 4.10 0.00 34.95 1.52
565 757 5.994887 ATGTTGAGCACTAAACACGTTTA 57.005 34.783 2.61 2.60 39.00 2.01
566 758 4.893424 ATGTTGAGCACTAAACACGTTT 57.107 36.364 2.61 0.22 39.00 3.60
567 759 4.497340 CCAATGTTGAGCACTAAACACGTT 60.497 41.667 2.61 0.00 39.00 3.99
568 760 3.003275 CCAATGTTGAGCACTAAACACGT 59.997 43.478 2.61 0.00 39.00 4.49
569 761 3.249799 TCCAATGTTGAGCACTAAACACG 59.750 43.478 2.61 0.00 39.00 4.49
570 762 4.787598 CTCCAATGTTGAGCACTAAACAC 58.212 43.478 2.61 0.00 39.00 3.32
571 763 3.253188 GCTCCAATGTTGAGCACTAAACA 59.747 43.478 3.05 3.05 41.24 2.83
572 764 3.667960 CGCTCCAATGTTGAGCACTAAAC 60.668 47.826 12.22 0.00 41.64 2.01
573 765 2.483877 CGCTCCAATGTTGAGCACTAAA 59.516 45.455 12.22 0.00 41.64 1.85
574 766 2.076100 CGCTCCAATGTTGAGCACTAA 58.924 47.619 12.22 0.00 41.64 2.24
575 767 1.275010 TCGCTCCAATGTTGAGCACTA 59.725 47.619 12.22 0.00 41.64 2.74
576 768 0.035317 TCGCTCCAATGTTGAGCACT 59.965 50.000 12.22 0.00 41.64 4.40
577 769 1.089920 ATCGCTCCAATGTTGAGCAC 58.910 50.000 12.22 0.00 41.64 4.40
578 770 1.739466 GAATCGCTCCAATGTTGAGCA 59.261 47.619 12.22 1.02 41.64 4.26
579 771 1.267732 CGAATCGCTCCAATGTTGAGC 60.268 52.381 2.24 2.24 38.48 4.26
580 772 2.270923 TCGAATCGCTCCAATGTTGAG 58.729 47.619 0.00 0.00 0.00 3.02
581 773 2.378445 TCGAATCGCTCCAATGTTGA 57.622 45.000 0.00 0.00 0.00 3.18
582 774 2.476185 GGTTCGAATCGCTCCAATGTTG 60.476 50.000 0.00 0.00 0.00 3.33
583 775 1.737793 GGTTCGAATCGCTCCAATGTT 59.262 47.619 0.00 0.00 0.00 2.71
584 776 1.338674 TGGTTCGAATCGCTCCAATGT 60.339 47.619 13.87 0.00 0.00 2.71
585 777 1.062587 GTGGTTCGAATCGCTCCAATG 59.937 52.381 14.66 0.00 33.41 2.82
586 778 1.066143 AGTGGTTCGAATCGCTCCAAT 60.066 47.619 18.61 8.68 33.41 3.16
587 779 0.320374 AGTGGTTCGAATCGCTCCAA 59.680 50.000 18.61 0.00 33.41 3.53
588 780 1.134367 CTAGTGGTTCGAATCGCTCCA 59.866 52.381 26.79 13.76 31.28 3.86
589 781 1.404391 TCTAGTGGTTCGAATCGCTCC 59.596 52.381 26.79 11.14 31.28 4.70
590 782 2.846039 TCTAGTGGTTCGAATCGCTC 57.154 50.000 26.79 8.67 31.28 5.03
591 783 2.688446 TGATCTAGTGGTTCGAATCGCT 59.312 45.455 26.29 26.29 33.75 4.93
592 784 2.789893 GTGATCTAGTGGTTCGAATCGC 59.210 50.000 14.13 14.13 0.00 4.58
593 785 4.028852 TGTGATCTAGTGGTTCGAATCG 57.971 45.455 0.00 0.00 0.00 3.34
594 786 5.592054 TCATGTGATCTAGTGGTTCGAATC 58.408 41.667 0.00 0.00 0.00 2.52
595 787 5.598416 TCATGTGATCTAGTGGTTCGAAT 57.402 39.130 0.00 0.00 0.00 3.34
596 788 5.598416 ATCATGTGATCTAGTGGTTCGAA 57.402 39.130 0.00 0.00 0.00 3.71
597 789 6.901081 ATATCATGTGATCTAGTGGTTCGA 57.099 37.500 0.00 0.00 36.05 3.71
598 790 7.653311 TCAAATATCATGTGATCTAGTGGTTCG 59.347 37.037 0.00 0.00 36.05 3.95
599 791 8.768955 GTCAAATATCATGTGATCTAGTGGTTC 58.231 37.037 0.00 0.00 36.05 3.62
600 792 7.439356 CGTCAAATATCATGTGATCTAGTGGTT 59.561 37.037 0.00 0.00 36.05 3.67
601 793 6.925718 CGTCAAATATCATGTGATCTAGTGGT 59.074 38.462 0.00 0.00 36.05 4.16
602 794 6.367149 CCGTCAAATATCATGTGATCTAGTGG 59.633 42.308 0.00 0.00 36.05 4.00
603 795 6.925718 ACCGTCAAATATCATGTGATCTAGTG 59.074 38.462 0.00 0.00 36.05 2.74
604 796 7.055667 ACCGTCAAATATCATGTGATCTAGT 57.944 36.000 0.00 0.00 36.05 2.57
605 797 7.653311 TCAACCGTCAAATATCATGTGATCTAG 59.347 37.037 0.00 0.00 36.05 2.43
606 798 7.496747 TCAACCGTCAAATATCATGTGATCTA 58.503 34.615 0.00 0.00 36.05 1.98
607 799 6.348498 TCAACCGTCAAATATCATGTGATCT 58.652 36.000 0.00 0.00 36.05 2.75
608 800 6.479990 TCTCAACCGTCAAATATCATGTGATC 59.520 38.462 0.00 0.00 36.05 2.92
609 801 6.348498 TCTCAACCGTCAAATATCATGTGAT 58.652 36.000 0.68 0.68 38.51 3.06
610 802 5.729510 TCTCAACCGTCAAATATCATGTGA 58.270 37.500 0.00 0.00 0.00 3.58
611 803 6.424683 CATCTCAACCGTCAAATATCATGTG 58.575 40.000 0.00 0.00 0.00 3.21
612 804 5.528690 CCATCTCAACCGTCAAATATCATGT 59.471 40.000 0.00 0.00 0.00 3.21
613 805 5.528690 ACCATCTCAACCGTCAAATATCATG 59.471 40.000 0.00 0.00 0.00 3.07
614 806 5.684704 ACCATCTCAACCGTCAAATATCAT 58.315 37.500 0.00 0.00 0.00 2.45
615 807 5.097742 ACCATCTCAACCGTCAAATATCA 57.902 39.130 0.00 0.00 0.00 2.15
616 808 6.093495 TCAAACCATCTCAACCGTCAAATATC 59.907 38.462 0.00 0.00 0.00 1.63
617 809 5.943416 TCAAACCATCTCAACCGTCAAATAT 59.057 36.000 0.00 0.00 0.00 1.28
618 810 5.309638 TCAAACCATCTCAACCGTCAAATA 58.690 37.500 0.00 0.00 0.00 1.40
619 811 4.141287 TCAAACCATCTCAACCGTCAAAT 58.859 39.130 0.00 0.00 0.00 2.32
620 812 3.546724 TCAAACCATCTCAACCGTCAAA 58.453 40.909 0.00 0.00 0.00 2.69
621 813 3.201353 TCAAACCATCTCAACCGTCAA 57.799 42.857 0.00 0.00 0.00 3.18
622 814 2.920724 TCAAACCATCTCAACCGTCA 57.079 45.000 0.00 0.00 0.00 4.35
623 815 4.003648 AGATTCAAACCATCTCAACCGTC 58.996 43.478 0.00 0.00 0.00 4.79
624 816 3.753272 CAGATTCAAACCATCTCAACCGT 59.247 43.478 0.00 0.00 0.00 4.83
625 817 3.426695 GCAGATTCAAACCATCTCAACCG 60.427 47.826 0.00 0.00 0.00 4.44
626 818 3.119352 GGCAGATTCAAACCATCTCAACC 60.119 47.826 0.00 0.00 0.00 3.77
627 819 3.119352 GGGCAGATTCAAACCATCTCAAC 60.119 47.826 0.00 0.00 0.00 3.18
628 820 3.091545 GGGCAGATTCAAACCATCTCAA 58.908 45.455 0.00 0.00 0.00 3.02
629 821 2.621407 GGGGCAGATTCAAACCATCTCA 60.621 50.000 0.00 0.00 0.00 3.27
630 822 2.027385 GGGGCAGATTCAAACCATCTC 58.973 52.381 0.00 0.00 0.00 2.75
631 823 1.642762 AGGGGCAGATTCAAACCATCT 59.357 47.619 0.00 0.00 0.00 2.90
632 824 2.149973 AGGGGCAGATTCAAACCATC 57.850 50.000 0.00 0.00 0.00 3.51
633 825 2.568509 CAAAGGGGCAGATTCAAACCAT 59.431 45.455 0.00 0.00 0.00 3.55
634 826 1.969923 CAAAGGGGCAGATTCAAACCA 59.030 47.619 0.00 0.00 0.00 3.67
635 827 1.276138 CCAAAGGGGCAGATTCAAACC 59.724 52.381 0.00 0.00 0.00 3.27
636 828 2.749280 CCAAAGGGGCAGATTCAAAC 57.251 50.000 0.00 0.00 0.00 2.93
680 872 9.986157 AAATGGAATTGTGAGGCATATATATCT 57.014 29.630 0.00 0.00 36.10 1.98
682 874 9.193806 GGAAATGGAATTGTGAGGCATATATAT 57.806 33.333 0.00 0.00 36.10 0.86
683 875 8.393259 AGGAAATGGAATTGTGAGGCATATATA 58.607 33.333 0.00 0.00 36.10 0.86
684 876 7.243824 AGGAAATGGAATTGTGAGGCATATAT 58.756 34.615 0.00 0.00 36.10 0.86
749 942 9.196552 CGTCAGAGCTCATATTATCAAATTACA 57.803 33.333 17.77 0.00 0.00 2.41
760 953 4.554292 CATAGCACGTCAGAGCTCATATT 58.446 43.478 17.77 0.00 43.14 1.28
818 1014 5.289083 TGATCGTGGATTGGTTGATATCA 57.711 39.130 0.00 0.00 0.00 2.15
831 1027 3.616821 CGAGCTTGTTAATTGATCGTGGA 59.383 43.478 0.00 0.00 35.33 4.02
859 1057 6.321945 TGGGATACTCACGTTGTAGCTAAATA 59.678 38.462 11.74 0.00 0.00 1.40
871 1069 2.158445 AGGCTAGATGGGATACTCACGT 60.158 50.000 0.00 0.00 0.00 4.49
898 1098 9.125026 CCAATGCTAACTAGGTAAAGATTGATT 57.875 33.333 11.88 0.00 0.00 2.57
938 1138 4.084900 GCAATAGCAAGCTGTGTTTCAAAC 60.085 41.667 4.53 0.00 41.58 2.93
941 1141 2.886523 AGCAATAGCAAGCTGTGTTTCA 59.113 40.909 4.53 0.00 45.49 2.69
950 1150 2.287373 CACTGAGCTAGCAATAGCAAGC 59.713 50.000 18.83 0.00 45.11 4.01
996 1196 0.596083 CGTCCATGGAGCTCATCGTC 60.596 60.000 16.81 0.00 32.92 4.20
1010 1210 2.747022 CATGGGTGGTGTCGTCCA 59.253 61.111 0.00 0.00 34.85 4.02
1025 1225 2.503895 CTCAACAAAGAGGCCTCCAT 57.496 50.000 29.54 16.10 31.94 3.41
1038 1238 2.609491 CCACGACTTCGATTCCTCAACA 60.609 50.000 5.47 0.00 43.02 3.33
1047 1247 3.064987 CTCCGGCCACGACTTCGAT 62.065 63.158 2.24 0.00 44.60 3.59
1118 1318 4.097135 GGAGGACGACGATATCATCATCAT 59.903 45.833 0.00 0.00 0.00 2.45
1122 1322 2.160205 GGGAGGACGACGATATCATCA 58.840 52.381 0.00 0.00 0.00 3.07
1180 1380 0.107643 TCGACAAAGATGGGCACACA 59.892 50.000 0.00 0.00 0.00 3.72
1187 1387 0.790207 CACGGTGTCGACAAAGATGG 59.210 55.000 21.95 8.36 40.11 3.51
1197 1397 3.708734 GTTTCGGCCACGGTGTCG 61.709 66.667 2.24 10.58 41.39 4.35
1206 1406 1.268625 CCAGTAAAAGGTGTTTCGGCC 59.731 52.381 0.00 0.00 0.00 6.13
1240 1440 2.106511 GGCATACATTCCTCTTGGCCTA 59.893 50.000 3.32 0.00 37.22 3.93
1246 1446 2.648059 GTGCAGGCATACATTCCTCTT 58.352 47.619 0.00 0.00 0.00 2.85
1248 1448 1.312815 GGTGCAGGCATACATTCCTC 58.687 55.000 0.00 0.00 0.00 3.71
1326 1526 0.604780 AGCGATCCATGCCATGCTAC 60.605 55.000 0.00 0.00 0.00 3.58
1343 1548 7.271223 CAGTGCAAAAACATACACATAAGTAGC 59.729 37.037 0.00 0.00 35.47 3.58
1372 1577 8.816894 TCTACCACTCTCTCATCAAACTAAAAT 58.183 33.333 0.00 0.00 0.00 1.82
1394 1599 9.745880 TTGAGTTAATCAAATACTCGGATCTAC 57.254 33.333 0.00 0.00 45.00 2.59
1456 1661 3.655777 TGAAGGGGACACCAAATAGACTT 59.344 43.478 0.00 0.00 43.89 3.01
1461 1666 2.553466 CGGTTGAAGGGGACACCAAATA 60.553 50.000 0.00 0.00 43.89 1.40
1473 1678 4.035558 CACATGTATGAATCCGGTTGAAGG 59.964 45.833 0.00 0.00 0.00 3.46
1478 1683 2.092429 AGCCACATGTATGAATCCGGTT 60.092 45.455 0.00 0.00 0.00 4.44
1523 1728 5.861787 GCGTTTTGGTGACATTTTATAGCTT 59.138 36.000 0.00 0.00 42.32 3.74
1541 1746 6.369065 CCATGTAAGAACTCTAGAAGCGTTTT 59.631 38.462 0.00 0.00 0.00 2.43
1571 1776 0.179032 AACAACAGCGGACATGGTCA 60.179 50.000 0.00 0.00 33.68 4.02
1576 1781 3.518634 AAACAAAACAACAGCGGACAT 57.481 38.095 0.00 0.00 0.00 3.06
1606 1811 6.918067 ACAAGATAAAGAAAGGGGGAAAAG 57.082 37.500 0.00 0.00 0.00 2.27
1611 1816 5.333581 AGGAAACAAGATAAAGAAAGGGGG 58.666 41.667 0.00 0.00 0.00 5.40
1612 1817 6.918067 AAGGAAACAAGATAAAGAAAGGGG 57.082 37.500 0.00 0.00 0.00 4.79
1613 1818 8.183104 AGAAAGGAAACAAGATAAAGAAAGGG 57.817 34.615 0.00 0.00 0.00 3.95
1630 1835 6.850752 AAAACCAACAGAAAGAGAAAGGAA 57.149 33.333 0.00 0.00 0.00 3.36
1631 1836 6.663523 AGAAAAACCAACAGAAAGAGAAAGGA 59.336 34.615 0.00 0.00 0.00 3.36
1632 1837 6.867550 AGAAAAACCAACAGAAAGAGAAAGG 58.132 36.000 0.00 0.00 0.00 3.11
1633 1838 8.763049 AAAGAAAAACCAACAGAAAGAGAAAG 57.237 30.769 0.00 0.00 0.00 2.62
1634 1839 9.203421 GAAAAGAAAAACCAACAGAAAGAGAAA 57.797 29.630 0.00 0.00 0.00 2.52
1635 1840 7.817478 GGAAAAGAAAAACCAACAGAAAGAGAA 59.183 33.333 0.00 0.00 0.00 2.87
1636 1841 7.178451 AGGAAAAGAAAAACCAACAGAAAGAGA 59.822 33.333 0.00 0.00 0.00 3.10
1644 1849 7.563556 AGGAGAATAGGAAAAGAAAAACCAACA 59.436 33.333 0.00 0.00 0.00 3.33
1831 2038 3.077907 CCTTCTTTCCCCGGCTCA 58.922 61.111 0.00 0.00 0.00 4.26
1898 2105 1.526887 GTATCATGGCGTGTCGATTGG 59.473 52.381 6.60 0.00 0.00 3.16
1913 2120 8.021898 TGTTGTCTCTAATGATGATGGTATCA 57.978 34.615 0.00 0.00 44.55 2.15
1916 2123 8.021898 TGATGTTGTCTCTAATGATGATGGTA 57.978 34.615 0.00 0.00 0.00 3.25
1941 2148 0.914902 GGAGGGCCCCACTTCTACTT 60.915 60.000 21.43 0.00 0.00 2.24
1943 2150 0.914902 AAGGAGGGCCCCACTTCTAC 60.915 60.000 21.43 0.00 34.66 2.59
1954 2161 2.422945 CCCTACCATTGTAAAGGAGGGC 60.423 54.545 0.00 0.00 36.35 5.19
1955 2162 3.118000 GTCCCTACCATTGTAAAGGAGGG 60.118 52.174 0.00 0.00 40.66 4.30
1983 2190 1.619827 ACACAATGGCCAATGGTTCTG 59.380 47.619 24.49 15.44 0.00 3.02
1984 2191 2.014010 ACACAATGGCCAATGGTTCT 57.986 45.000 24.49 0.40 0.00 3.01
2006 2213 1.224315 CAATGATGCCAGACGGGGA 59.776 57.895 0.00 0.00 43.39 4.81
2011 2218 4.022068 TCCTTTTTGTCAATGATGCCAGAC 60.022 41.667 0.00 0.00 0.00 3.51
2023 2230 9.672673 TGGTTGAAAATTATTTCCTTTTTGTCA 57.327 25.926 0.00 0.00 43.54 3.58
2063 2270 2.916934 TCAACTGGGTTGGCTAGGTATT 59.083 45.455 9.98 0.00 42.99 1.89
2076 2283 0.863144 CGTACACCGTTTCAACTGGG 59.137 55.000 0.00 0.00 0.00 4.45
2094 2301 7.627340 GTCACCAAACCATATAGTTTATGACG 58.373 38.462 18.62 2.57 40.91 4.35
2119 2326 4.358851 TCAATCTGAAAAAGCAACAACCG 58.641 39.130 0.00 0.00 0.00 4.44
2127 2334 4.874970 TGCTTCCTTCAATCTGAAAAAGC 58.125 39.130 19.45 19.45 45.58 3.51
2128 2335 7.824672 AGTATGCTTCCTTCAATCTGAAAAAG 58.175 34.615 6.75 6.75 35.73 2.27
2137 2345 6.060788 GGAGATCAAGTATGCTTCCTTCAAT 58.939 40.000 0.00 0.00 31.49 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.