Multiple sequence alignment - TraesCS1A01G040900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G040900 chr1A 100.000 2894 0 0 1 2894 22533698 22536591 0.000000e+00 5345.0
1 TraesCS1A01G040900 chr1A 100.000 168 0 0 3270 3437 22536967 22537134 9.260000e-81 311.0
2 TraesCS1A01G040900 chr1A 86.667 90 6 3 2441 2524 576371165 576371076 1.020000e-15 95.3
3 TraesCS1A01G040900 chr1A 79.747 79 15 1 605 682 523006525 523006603 4.790000e-04 56.5
4 TraesCS1A01G040900 chr1D 94.723 2274 99 11 479 2742 20828178 20825916 0.000000e+00 3515.0
5 TraesCS1A01G040900 chr1D 90.968 310 24 2 116 425 315545661 315545966 6.860000e-112 414.0
6 TraesCS1A01G040900 chr1D 94.012 167 10 0 3271 3437 20825759 20825593 1.580000e-63 254.0
7 TraesCS1A01G040900 chr1D 95.652 46 2 0 3392 3437 22952825 22952780 1.320000e-09 75.0
8 TraesCS1A01G040900 chr1B 93.556 2157 112 16 479 2620 34168809 34166665 0.000000e+00 3188.0
9 TraesCS1A01G040900 chr1B 91.018 167 14 1 3271 3437 34166322 34166157 1.240000e-54 224.0
10 TraesCS1A01G040900 chr7A 82.011 1701 267 31 751 2427 167987578 167985893 0.000000e+00 1410.0
11 TraesCS1A01G040900 chr7A 88.924 316 33 2 114 427 65103132 65102817 4.160000e-104 388.0
12 TraesCS1A01G040900 chr7A 87.719 57 6 1 632 687 496836465 496836521 7.960000e-07 65.8
13 TraesCS1A01G040900 chr7B 81.667 1740 264 42 722 2427 130898636 130896918 0.000000e+00 1395.0
14 TraesCS1A01G040900 chr7B 79.306 749 142 5 1447 2193 131068040 131067303 2.370000e-141 512.0
15 TraesCS1A01G040900 chr7B 95.556 45 2 0 3393 3437 372324069 372324025 4.760000e-09 73.1
16 TraesCS1A01G040900 chr7D 81.813 1611 257 28 715 2301 166928298 166926700 0.000000e+00 1319.0
17 TraesCS1A01G040900 chr7D 84.458 1171 167 12 1263 2427 166887093 166885932 0.000000e+00 1140.0
18 TraesCS1A01G040900 chr7D 78.648 562 94 20 715 1257 166888108 166887554 1.960000e-92 350.0
19 TraesCS1A01G040900 chr7D 83.908 87 14 0 604 690 126062608 126062694 2.200000e-12 84.2
20 TraesCS1A01G040900 chr7D 94.595 37 2 0 3393 3429 377601675 377601639 1.330000e-04 58.4
21 TraesCS1A01G040900 chr6B 81.318 1381 241 13 1040 2416 21093074 21091707 0.000000e+00 1105.0
22 TraesCS1A01G040900 chr6B 82.122 509 85 5 1040 1548 21099430 21098928 6.810000e-117 431.0
23 TraesCS1A01G040900 chr6B 86.022 93 6 2 2435 2520 125726938 125727030 3.650000e-15 93.5
24 TraesCS1A01G040900 chr6B 86.517 89 6 3 2438 2520 713937503 713937591 3.650000e-15 93.5
25 TraesCS1A01G040900 chr6A 80.127 1419 249 26 1038 2443 12433870 12432472 0.000000e+00 1027.0
26 TraesCS1A01G040900 chr6D 79.792 866 162 11 1555 2416 11182174 11181318 4.870000e-173 617.0
27 TraesCS1A01G040900 chr4D 92.283 311 22 2 116 425 461371206 461370897 1.130000e-119 440.0
28 TraesCS1A01G040900 chr4D 92.657 286 16 3 116 400 323997552 323997833 1.150000e-109 407.0
29 TraesCS1A01G040900 chr2D 91.935 310 24 1 116 425 72370017 72370325 1.890000e-117 433.0
30 TraesCS1A01G040900 chr2D 91.139 316 27 1 110 425 72626856 72627170 8.810000e-116 427.0
31 TraesCS1A01G040900 chr2D 90.536 317 27 3 110 425 72650520 72650834 1.910000e-112 416.0
32 TraesCS1A01G040900 chr2D 90.323 62 4 2 3376 3437 39436001 39435942 2.840000e-11 80.5
33 TraesCS1A01G040900 chr5B 90.705 312 26 2 116 425 58429503 58429813 2.470000e-111 412.0
34 TraesCS1A01G040900 chr5A 89.490 314 29 3 113 425 601242441 601242751 8.940000e-106 394.0
35 TraesCS1A01G040900 chr5A 88.889 63 6 1 629 690 702957214 702957276 3.680000e-10 76.8
36 TraesCS1A01G040900 chr5D 89.011 91 3 4 2442 2525 486191636 486191726 4.690000e-19 106.0
37 TraesCS1A01G040900 chr5D 85.393 89 9 3 2439 2527 127258383 127258299 4.720000e-14 89.8
38 TraesCS1A01G040900 chr5D 94.444 36 2 0 655 690 549230393 549230358 4.790000e-04 56.5
39 TraesCS1A01G040900 chr2A 88.235 85 4 1 2442 2520 464165206 464165122 2.820000e-16 97.1
40 TraesCS1A01G040900 chr2A 92.000 50 3 1 640 688 744439612 744439563 6.150000e-08 69.4
41 TraesCS1A01G040900 chr2B 86.517 89 6 3 2442 2524 28631536 28631624 3.650000e-15 93.5
42 TraesCS1A01G040900 chr2B 85.227 88 13 0 605 692 37428354 37428267 1.310000e-14 91.6
43 TraesCS1A01G040900 chr3D 85.714 91 7 3 2440 2524 382116452 382116362 1.310000e-14 91.6
44 TraesCS1A01G040900 chr4A 94.231 52 2 1 3387 3437 109441636 109441585 1.020000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G040900 chr1A 22533698 22537134 3436 False 2828.0 5345 100.0000 1 3437 2 chr1A.!!$F2 3436
1 TraesCS1A01G040900 chr1D 20825593 20828178 2585 True 1884.5 3515 94.3675 479 3437 2 chr1D.!!$R2 2958
2 TraesCS1A01G040900 chr1B 34166157 34168809 2652 True 1706.0 3188 92.2870 479 3437 2 chr1B.!!$R1 2958
3 TraesCS1A01G040900 chr7A 167985893 167987578 1685 True 1410.0 1410 82.0110 751 2427 1 chr7A.!!$R2 1676
4 TraesCS1A01G040900 chr7B 130896918 130898636 1718 True 1395.0 1395 81.6670 722 2427 1 chr7B.!!$R1 1705
5 TraesCS1A01G040900 chr7B 131067303 131068040 737 True 512.0 512 79.3060 1447 2193 1 chr7B.!!$R2 746
6 TraesCS1A01G040900 chr7D 166926700 166928298 1598 True 1319.0 1319 81.8130 715 2301 1 chr7D.!!$R1 1586
7 TraesCS1A01G040900 chr7D 166885932 166888108 2176 True 745.0 1140 81.5530 715 2427 2 chr7D.!!$R3 1712
8 TraesCS1A01G040900 chr6B 21091707 21093074 1367 True 1105.0 1105 81.3180 1040 2416 1 chr6B.!!$R1 1376
9 TraesCS1A01G040900 chr6B 21098928 21099430 502 True 431.0 431 82.1220 1040 1548 1 chr6B.!!$R2 508
10 TraesCS1A01G040900 chr6A 12432472 12433870 1398 True 1027.0 1027 80.1270 1038 2443 1 chr6A.!!$R1 1405
11 TraesCS1A01G040900 chr6D 11181318 11182174 856 True 617.0 617 79.7920 1555 2416 1 chr6D.!!$R1 861

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
77 78 0.034186 ACCGTGCACCATGGATTGAT 60.034 50.0 21.47 0.0 42.73 2.57 F
319 320 0.037605 AAACCGACCTCGCACCTAAG 60.038 55.0 0.00 0.0 38.18 2.18 F
425 426 0.104120 CCGCCATCTTACACCGATCA 59.896 55.0 0.00 0.0 0.00 2.92 F
587 589 0.179000 AGCATGACGAGTTCCCATCC 59.821 55.0 0.00 0.0 0.00 3.51 F
1474 1977 0.248498 GATCATCTTCGCGACCGTCA 60.248 55.0 9.15 0.0 35.54 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1611 2115 0.035534 CCATCCCGGACATGTTCACA 60.036 55.000 0.73 0.0 36.56 3.58 R
1863 2367 0.613260 TATCCTTGGCAGCGTTGAGT 59.387 50.000 2.38 0.0 0.00 3.41 R
1872 2376 1.062121 AGGTAGGCTCTATCCTTGGCA 60.062 52.381 0.00 0.0 37.66 4.92 R
2157 2661 2.111669 CACAGGCTGGTCTGCACA 59.888 61.111 20.34 0.0 38.26 4.57 R
3269 3782 0.179006 GGGCTTAGATGGGGCAGAAG 60.179 60.000 0.00 0.0 0.00 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.499004 ACATGCTTTGTTAGGAGTTAGGA 57.501 39.130 0.00 0.00 33.74 2.94
23 24 5.876357 ACATGCTTTGTTAGGAGTTAGGAA 58.124 37.500 0.00 0.00 33.74 3.36
24 25 6.485171 ACATGCTTTGTTAGGAGTTAGGAAT 58.515 36.000 0.00 0.00 33.74 3.01
25 26 6.948309 ACATGCTTTGTTAGGAGTTAGGAATT 59.052 34.615 0.00 0.00 33.74 2.17
26 27 8.107095 ACATGCTTTGTTAGGAGTTAGGAATTA 58.893 33.333 0.00 0.00 33.74 1.40
27 28 8.956426 CATGCTTTGTTAGGAGTTAGGAATTAA 58.044 33.333 0.00 0.00 0.00 1.40
28 29 9.700831 ATGCTTTGTTAGGAGTTAGGAATTAAT 57.299 29.630 0.00 0.00 0.00 1.40
29 30 9.174166 TGCTTTGTTAGGAGTTAGGAATTAATC 57.826 33.333 0.00 0.00 0.00 1.75
30 31 9.397280 GCTTTGTTAGGAGTTAGGAATTAATCT 57.603 33.333 0.00 0.00 0.00 2.40
32 33 9.901172 TTTGTTAGGAGTTAGGAATTAATCTCC 57.099 33.333 9.56 9.56 38.49 3.71
33 34 8.618240 TGTTAGGAGTTAGGAATTAATCTCCA 57.382 34.615 16.73 4.86 39.49 3.86
34 35 9.053472 TGTTAGGAGTTAGGAATTAATCTCCAA 57.947 33.333 16.73 9.02 39.49 3.53
35 36 9.327628 GTTAGGAGTTAGGAATTAATCTCCAAC 57.672 37.037 16.73 14.37 39.49 3.77
36 37 7.510675 AGGAGTTAGGAATTAATCTCCAACA 57.489 36.000 16.73 3.16 39.49 3.33
37 38 8.107196 AGGAGTTAGGAATTAATCTCCAACAT 57.893 34.615 16.73 9.79 39.49 2.71
38 39 9.225682 AGGAGTTAGGAATTAATCTCCAACATA 57.774 33.333 16.73 2.33 39.49 2.29
39 40 9.274206 GGAGTTAGGAATTAATCTCCAACATAC 57.726 37.037 11.79 10.69 38.31 2.39
40 41 9.832445 GAGTTAGGAATTAATCTCCAACATACA 57.168 33.333 14.95 0.00 35.20 2.29
43 44 7.969536 AGGAATTAATCTCCAACATACATCG 57.030 36.000 14.95 0.00 35.20 3.84
44 45 7.735917 AGGAATTAATCTCCAACATACATCGA 58.264 34.615 14.95 0.00 35.20 3.59
45 46 7.657761 AGGAATTAATCTCCAACATACATCGAC 59.342 37.037 14.95 0.00 35.20 4.20
46 47 7.441157 GGAATTAATCTCCAACATACATCGACA 59.559 37.037 10.18 0.00 32.77 4.35
47 48 7.953158 ATTAATCTCCAACATACATCGACAG 57.047 36.000 0.00 0.00 0.00 3.51
48 49 3.165058 TCTCCAACATACATCGACAGC 57.835 47.619 0.00 0.00 0.00 4.40
49 50 2.760650 TCTCCAACATACATCGACAGCT 59.239 45.455 0.00 0.00 0.00 4.24
50 51 3.119291 CTCCAACATACATCGACAGCTC 58.881 50.000 0.00 0.00 0.00 4.09
51 52 2.495669 TCCAACATACATCGACAGCTCA 59.504 45.455 0.00 0.00 0.00 4.26
52 53 2.862536 CCAACATACATCGACAGCTCAG 59.137 50.000 0.00 0.00 0.00 3.35
53 54 2.862536 CAACATACATCGACAGCTCAGG 59.137 50.000 0.00 0.00 0.00 3.86
54 55 1.202463 ACATACATCGACAGCTCAGGC 60.202 52.381 0.00 0.00 39.06 4.85
55 56 1.114627 ATACATCGACAGCTCAGGCA 58.885 50.000 0.00 0.00 41.70 4.75
56 57 1.114627 TACATCGACAGCTCAGGCAT 58.885 50.000 0.00 0.00 41.70 4.40
57 58 1.114627 ACATCGACAGCTCAGGCATA 58.885 50.000 0.00 0.00 41.70 3.14
58 59 1.482182 ACATCGACAGCTCAGGCATAA 59.518 47.619 0.00 0.00 41.70 1.90
59 60 1.863454 CATCGACAGCTCAGGCATAAC 59.137 52.381 0.00 0.00 41.70 1.89
60 61 0.175760 TCGACAGCTCAGGCATAACC 59.824 55.000 0.00 0.00 41.70 2.85
61 62 1.148157 CGACAGCTCAGGCATAACCG 61.148 60.000 0.00 0.00 46.52 4.44
62 63 0.108138 GACAGCTCAGGCATAACCGT 60.108 55.000 0.00 0.00 46.52 4.83
63 64 0.391661 ACAGCTCAGGCATAACCGTG 60.392 55.000 0.00 0.00 46.52 4.94
64 65 1.450312 AGCTCAGGCATAACCGTGC 60.450 57.895 0.00 0.00 46.52 5.34
65 66 1.745115 GCTCAGGCATAACCGTGCA 60.745 57.895 1.06 0.00 46.81 4.57
66 67 1.982073 GCTCAGGCATAACCGTGCAC 61.982 60.000 6.82 6.82 46.81 4.57
67 68 1.369091 CTCAGGCATAACCGTGCACC 61.369 60.000 12.15 0.00 46.81 5.01
68 69 1.673993 CAGGCATAACCGTGCACCA 60.674 57.895 12.15 0.00 46.81 4.17
69 70 1.031571 CAGGCATAACCGTGCACCAT 61.032 55.000 12.15 0.00 46.81 3.55
70 71 1.031571 AGGCATAACCGTGCACCATG 61.032 55.000 12.15 10.65 46.81 3.66
71 72 1.433064 GCATAACCGTGCACCATGG 59.567 57.895 11.19 11.19 45.34 3.66
72 73 1.029408 GCATAACCGTGCACCATGGA 61.029 55.000 21.47 0.00 42.73 3.41
73 74 1.679139 CATAACCGTGCACCATGGAT 58.321 50.000 21.47 6.75 42.73 3.41
74 75 2.023673 CATAACCGTGCACCATGGATT 58.976 47.619 21.47 8.62 42.73 3.01
75 76 1.458398 TAACCGTGCACCATGGATTG 58.542 50.000 21.47 8.56 42.73 2.67
76 77 0.251121 AACCGTGCACCATGGATTGA 60.251 50.000 21.47 0.00 42.73 2.57
77 78 0.034186 ACCGTGCACCATGGATTGAT 60.034 50.000 21.47 0.00 42.73 2.57
78 79 1.211703 ACCGTGCACCATGGATTGATA 59.788 47.619 21.47 0.00 42.73 2.15
79 80 2.158623 ACCGTGCACCATGGATTGATAT 60.159 45.455 21.47 0.00 42.73 1.63
80 81 2.227149 CCGTGCACCATGGATTGATATG 59.773 50.000 21.47 5.19 42.73 1.78
81 82 2.880268 CGTGCACCATGGATTGATATGT 59.120 45.455 21.47 0.00 0.00 2.29
82 83 3.058708 CGTGCACCATGGATTGATATGTC 60.059 47.826 21.47 1.60 0.00 3.06
83 84 3.884693 GTGCACCATGGATTGATATGTCA 59.115 43.478 21.47 4.21 0.00 3.58
84 85 4.521639 GTGCACCATGGATTGATATGTCAT 59.478 41.667 21.47 0.00 33.56 3.06
85 86 4.521256 TGCACCATGGATTGATATGTCATG 59.479 41.667 21.47 1.89 36.08 3.07
91 92 6.863275 CATGGATTGATATGTCATGGAATGG 58.137 40.000 0.00 0.00 46.73 3.16
92 93 6.203526 TGGATTGATATGTCATGGAATGGA 57.796 37.500 0.00 0.00 46.73 3.41
93 94 6.005823 TGGATTGATATGTCATGGAATGGAC 58.994 40.000 0.00 0.00 46.73 4.02
94 95 5.122869 GGATTGATATGTCATGGAATGGACG 59.877 44.000 0.00 0.00 46.73 4.79
95 96 4.953940 TGATATGTCATGGAATGGACGA 57.046 40.909 0.00 0.00 46.73 4.20
96 97 4.631131 TGATATGTCATGGAATGGACGAC 58.369 43.478 0.00 0.00 46.73 4.34
97 98 4.100808 TGATATGTCATGGAATGGACGACA 59.899 41.667 0.00 0.00 46.73 4.35
98 99 2.093306 TGTCATGGAATGGACGACAC 57.907 50.000 0.00 0.00 46.73 3.67
99 100 1.346068 TGTCATGGAATGGACGACACA 59.654 47.619 0.00 0.00 46.73 3.72
100 101 1.732259 GTCATGGAATGGACGACACAC 59.268 52.381 0.00 0.00 46.73 3.82
101 102 1.623311 TCATGGAATGGACGACACACT 59.377 47.619 0.00 0.00 46.73 3.55
102 103 2.829120 TCATGGAATGGACGACACACTA 59.171 45.455 0.00 0.00 46.73 2.74
103 104 3.450817 TCATGGAATGGACGACACACTAT 59.549 43.478 0.00 0.00 46.73 2.12
104 105 4.647399 TCATGGAATGGACGACACACTATA 59.353 41.667 0.00 0.00 46.73 1.31
105 106 5.128008 TCATGGAATGGACGACACACTATAA 59.872 40.000 0.00 0.00 46.73 0.98
106 107 5.408880 TGGAATGGACGACACACTATAAA 57.591 39.130 0.00 0.00 0.00 1.40
107 108 5.984725 TGGAATGGACGACACACTATAAAT 58.015 37.500 0.00 0.00 0.00 1.40
108 109 6.411376 TGGAATGGACGACACACTATAAATT 58.589 36.000 0.00 0.00 0.00 1.82
109 110 6.882140 TGGAATGGACGACACACTATAAATTT 59.118 34.615 0.00 0.00 0.00 1.82
110 111 7.392113 TGGAATGGACGACACACTATAAATTTT 59.608 33.333 0.00 0.00 0.00 1.82
111 112 7.908601 GGAATGGACGACACACTATAAATTTTC 59.091 37.037 0.00 0.00 0.00 2.29
112 113 6.730960 TGGACGACACACTATAAATTTTCC 57.269 37.500 0.00 0.00 0.00 3.13
113 114 6.469410 TGGACGACACACTATAAATTTTCCT 58.531 36.000 0.00 0.00 0.00 3.36
114 115 6.592607 TGGACGACACACTATAAATTTTCCTC 59.407 38.462 0.00 0.00 0.00 3.71
115 116 6.817140 GGACGACACACTATAAATTTTCCTCT 59.183 38.462 0.00 0.00 0.00 3.69
116 117 7.333672 GGACGACACACTATAAATTTTCCTCTT 59.666 37.037 0.00 0.00 0.00 2.85
117 118 8.617290 ACGACACACTATAAATTTTCCTCTTT 57.383 30.769 0.00 0.00 0.00 2.52
118 119 9.063615 ACGACACACTATAAATTTTCCTCTTTT 57.936 29.630 0.00 0.00 0.00 2.27
119 120 9.893305 CGACACACTATAAATTTTCCTCTTTTT 57.107 29.630 0.00 0.00 0.00 1.94
146 147 3.394836 AGGAAGACCTGCGGCCTC 61.395 66.667 0.00 0.00 45.92 4.70
147 148 3.394836 GGAAGACCTGCGGCCTCT 61.395 66.667 0.00 0.00 0.00 3.69
148 149 2.125350 GAAGACCTGCGGCCTCTG 60.125 66.667 0.00 0.00 0.00 3.35
149 150 4.400961 AAGACCTGCGGCCTCTGC 62.401 66.667 0.00 0.00 0.00 4.26
151 152 4.479993 GACCTGCGGCCTCTGCAT 62.480 66.667 4.14 0.00 42.32 3.96
152 153 4.479993 ACCTGCGGCCTCTGCATC 62.480 66.667 4.14 0.00 42.32 3.91
153 154 4.172512 CCTGCGGCCTCTGCATCT 62.173 66.667 4.14 0.00 42.32 2.90
154 155 2.895865 CTGCGGCCTCTGCATCTG 60.896 66.667 4.14 0.00 42.32 2.90
155 156 4.478371 TGCGGCCTCTGCATCTGG 62.478 66.667 0.00 0.00 40.13 3.86
156 157 4.166888 GCGGCCTCTGCATCTGGA 62.167 66.667 0.00 0.00 40.13 3.86
157 158 2.202987 CGGCCTCTGCATCTGGAC 60.203 66.667 0.00 0.35 40.13 4.02
158 159 2.202987 GGCCTCTGCATCTGGACG 60.203 66.667 0.00 0.00 40.13 4.79
159 160 2.725312 GGCCTCTGCATCTGGACGA 61.725 63.158 0.00 0.00 40.13 4.20
160 161 1.445095 GCCTCTGCATCTGGACGAT 59.555 57.895 0.00 0.00 37.47 3.73
167 168 2.697819 CATCTGGACGATGCATGCA 58.302 52.632 25.04 25.04 42.75 3.96
168 169 1.018910 CATCTGGACGATGCATGCAA 58.981 50.000 26.68 8.49 42.75 4.08
169 170 1.019673 ATCTGGACGATGCATGCAAC 58.980 50.000 26.68 21.63 0.00 4.17
170 171 1.026182 TCTGGACGATGCATGCAACC 61.026 55.000 26.68 23.28 0.00 3.77
171 172 1.303155 TGGACGATGCATGCAACCA 60.303 52.632 26.68 25.37 0.00 3.67
172 173 1.137404 GGACGATGCATGCAACCAC 59.863 57.895 26.68 16.19 0.00 4.16
173 174 1.308069 GGACGATGCATGCAACCACT 61.308 55.000 26.68 7.61 0.00 4.00
174 175 0.523072 GACGATGCATGCAACCACTT 59.477 50.000 26.68 6.72 0.00 3.16
175 176 0.961019 ACGATGCATGCAACCACTTT 59.039 45.000 26.68 5.83 0.00 2.66
176 177 2.158559 ACGATGCATGCAACCACTTTA 58.841 42.857 26.68 0.00 0.00 1.85
177 178 2.754552 ACGATGCATGCAACCACTTTAT 59.245 40.909 26.68 4.06 0.00 1.40
178 179 3.193267 ACGATGCATGCAACCACTTTATT 59.807 39.130 26.68 3.17 0.00 1.40
179 180 4.397730 ACGATGCATGCAACCACTTTATTA 59.602 37.500 26.68 0.00 0.00 0.98
180 181 5.105957 ACGATGCATGCAACCACTTTATTAA 60.106 36.000 26.68 0.00 0.00 1.40
181 182 5.978919 CGATGCATGCAACCACTTTATTAAT 59.021 36.000 26.68 1.78 0.00 1.40
182 183 6.476380 CGATGCATGCAACCACTTTATTAATT 59.524 34.615 26.68 1.01 0.00 1.40
183 184 7.647318 CGATGCATGCAACCACTTTATTAATTA 59.353 33.333 26.68 0.00 0.00 1.40
184 185 9.480053 GATGCATGCAACCACTTTATTAATTAT 57.520 29.630 26.68 0.14 0.00 1.28
185 186 9.835389 ATGCATGCAACCACTTTATTAATTATT 57.165 25.926 26.68 0.00 0.00 1.40
186 187 9.311916 TGCATGCAACCACTTTATTAATTATTC 57.688 29.630 20.30 0.00 0.00 1.75
187 188 9.311916 GCATGCAACCACTTTATTAATTATTCA 57.688 29.630 14.21 0.00 0.00 2.57
189 190 8.903570 TGCAACCACTTTATTAATTATTCACG 57.096 30.769 0.00 0.00 0.00 4.35
190 191 8.731605 TGCAACCACTTTATTAATTATTCACGA 58.268 29.630 0.00 0.00 0.00 4.35
191 192 9.562583 GCAACCACTTTATTAATTATTCACGAA 57.437 29.630 0.00 0.00 0.00 3.85
207 208 9.701098 TTATTCACGAAGATGTTACAAAGTAGT 57.299 29.630 0.00 0.00 0.00 2.73
209 210 8.511465 TTCACGAAGATGTTACAAAGTAGTAC 57.489 34.615 0.00 0.00 0.00 2.73
210 211 7.650890 TCACGAAGATGTTACAAAGTAGTACA 58.349 34.615 2.52 0.00 0.00 2.90
211 212 8.301720 TCACGAAGATGTTACAAAGTAGTACAT 58.698 33.333 2.52 0.00 0.00 2.29
212 213 8.584600 CACGAAGATGTTACAAAGTAGTACATC 58.415 37.037 2.52 11.36 35.33 3.06
213 214 8.301720 ACGAAGATGTTACAAAGTAGTACATCA 58.698 33.333 17.47 0.00 36.31 3.07
214 215 8.799091 CGAAGATGTTACAAAGTAGTACATCAG 58.201 37.037 17.47 9.29 36.31 2.90
215 216 9.640963 GAAGATGTTACAAAGTAGTACATCAGT 57.359 33.333 17.47 9.47 36.31 3.41
220 221 9.903682 TGTTACAAAGTAGTACATCAGTAAGTC 57.096 33.333 2.52 0.00 30.67 3.01
231 232 2.839486 CAGTAAGTCTGAAGCCACCA 57.161 50.000 0.00 0.00 46.27 4.17
232 233 3.340814 CAGTAAGTCTGAAGCCACCAT 57.659 47.619 0.00 0.00 46.27 3.55
233 234 3.265791 CAGTAAGTCTGAAGCCACCATC 58.734 50.000 0.00 0.00 46.27 3.51
234 235 3.055530 CAGTAAGTCTGAAGCCACCATCT 60.056 47.826 0.00 0.00 46.27 2.90
235 236 3.584848 AGTAAGTCTGAAGCCACCATCTT 59.415 43.478 0.00 0.00 0.00 2.40
236 237 2.486472 AGTCTGAAGCCACCATCTTG 57.514 50.000 0.00 0.00 0.00 3.02
237 238 1.004044 AGTCTGAAGCCACCATCTTGG 59.996 52.381 0.00 0.00 45.02 3.61
253 254 3.137484 TGGCAACATCTGTCGCTAC 57.863 52.632 0.00 0.00 46.17 3.58
254 255 0.608130 TGGCAACATCTGTCGCTACT 59.392 50.000 0.00 0.00 46.17 2.57
255 256 1.001974 TGGCAACATCTGTCGCTACTT 59.998 47.619 0.00 0.00 46.17 2.24
256 257 1.661112 GGCAACATCTGTCGCTACTTC 59.339 52.381 0.00 0.00 0.00 3.01
257 258 2.611518 GCAACATCTGTCGCTACTTCT 58.388 47.619 0.00 0.00 0.00 2.85
258 259 3.428999 GGCAACATCTGTCGCTACTTCTA 60.429 47.826 0.00 0.00 0.00 2.10
259 260 4.363999 GCAACATCTGTCGCTACTTCTAT 58.636 43.478 0.00 0.00 0.00 1.98
260 261 4.442733 GCAACATCTGTCGCTACTTCTATC 59.557 45.833 0.00 0.00 0.00 2.08
261 262 4.839668 ACATCTGTCGCTACTTCTATCC 57.160 45.455 0.00 0.00 0.00 2.59
262 263 4.207955 ACATCTGTCGCTACTTCTATCCA 58.792 43.478 0.00 0.00 0.00 3.41
263 264 4.036971 ACATCTGTCGCTACTTCTATCCAC 59.963 45.833 0.00 0.00 0.00 4.02
264 265 3.887352 TCTGTCGCTACTTCTATCCACT 58.113 45.455 0.00 0.00 0.00 4.00
265 266 4.270834 TCTGTCGCTACTTCTATCCACTT 58.729 43.478 0.00 0.00 0.00 3.16
266 267 4.096532 TCTGTCGCTACTTCTATCCACTTG 59.903 45.833 0.00 0.00 0.00 3.16
267 268 4.014406 TGTCGCTACTTCTATCCACTTGA 58.986 43.478 0.00 0.00 0.00 3.02
268 269 4.645136 TGTCGCTACTTCTATCCACTTGAT 59.355 41.667 0.00 0.00 37.49 2.57
269 270 4.979197 GTCGCTACTTCTATCCACTTGATG 59.021 45.833 0.00 0.00 34.76 3.07
270 271 4.887655 TCGCTACTTCTATCCACTTGATGA 59.112 41.667 0.00 0.00 34.76 2.92
271 272 5.359860 TCGCTACTTCTATCCACTTGATGAA 59.640 40.000 0.00 0.00 34.76 2.57
272 273 5.689514 CGCTACTTCTATCCACTTGATGAAG 59.310 44.000 0.00 0.00 40.55 3.02
273 274 5.988561 GCTACTTCTATCCACTTGATGAAGG 59.011 44.000 0.00 0.00 39.87 3.46
274 275 5.365021 ACTTCTATCCACTTGATGAAGGG 57.635 43.478 0.00 0.00 39.87 3.95
278 279 2.571548 CCACTTGATGAAGGGGTGC 58.428 57.895 4.81 0.00 46.61 5.01
279 280 0.967380 CCACTTGATGAAGGGGTGCC 60.967 60.000 4.81 0.00 46.61 5.01
280 281 1.002134 ACTTGATGAAGGGGTGCCG 60.002 57.895 0.00 0.00 32.95 5.69
281 282 1.299648 CTTGATGAAGGGGTGCCGA 59.700 57.895 0.00 0.00 0.00 5.54
282 283 0.107017 CTTGATGAAGGGGTGCCGAT 60.107 55.000 0.00 0.00 0.00 4.18
283 284 1.140852 CTTGATGAAGGGGTGCCGATA 59.859 52.381 0.00 0.00 0.00 2.92
284 285 0.758734 TGATGAAGGGGTGCCGATAG 59.241 55.000 0.00 0.00 0.00 2.08
285 286 0.759346 GATGAAGGGGTGCCGATAGT 59.241 55.000 0.00 0.00 0.00 2.12
286 287 0.759346 ATGAAGGGGTGCCGATAGTC 59.241 55.000 0.00 0.00 0.00 2.59
287 288 1.335132 TGAAGGGGTGCCGATAGTCC 61.335 60.000 0.00 0.00 0.00 3.85
288 289 2.365095 GAAGGGGTGCCGATAGTCCG 62.365 65.000 0.00 0.00 0.00 4.79
289 290 2.836360 GGGGTGCCGATAGTCCGA 60.836 66.667 0.00 0.00 0.00 4.55
290 291 2.728817 GGGTGCCGATAGTCCGAG 59.271 66.667 0.00 0.00 0.00 4.63
291 292 2.027751 GGTGCCGATAGTCCGAGC 59.972 66.667 0.00 0.00 0.00 5.03
292 293 2.027751 GTGCCGATAGTCCGAGCC 59.972 66.667 0.00 0.00 0.00 4.70
293 294 2.123854 TGCCGATAGTCCGAGCCT 60.124 61.111 0.00 0.00 0.00 4.58
294 295 1.149854 TGCCGATAGTCCGAGCCTA 59.850 57.895 0.00 0.00 0.00 3.93
295 296 0.466739 TGCCGATAGTCCGAGCCTAA 60.467 55.000 0.00 0.00 0.00 2.69
296 297 0.889306 GCCGATAGTCCGAGCCTAAT 59.111 55.000 0.00 0.00 0.00 1.73
297 298 2.089980 GCCGATAGTCCGAGCCTAATA 58.910 52.381 0.00 0.00 0.00 0.98
298 299 2.159407 GCCGATAGTCCGAGCCTAATAC 60.159 54.545 0.00 0.00 0.00 1.89
299 300 2.422832 CCGATAGTCCGAGCCTAATACC 59.577 54.545 0.00 0.00 0.00 2.73
300 301 3.079578 CGATAGTCCGAGCCTAATACCA 58.920 50.000 0.00 0.00 0.00 3.25
301 302 3.504906 CGATAGTCCGAGCCTAATACCAA 59.495 47.826 0.00 0.00 0.00 3.67
302 303 4.022589 CGATAGTCCGAGCCTAATACCAAA 60.023 45.833 0.00 0.00 0.00 3.28
303 304 3.538634 AGTCCGAGCCTAATACCAAAC 57.461 47.619 0.00 0.00 0.00 2.93
304 305 2.169978 AGTCCGAGCCTAATACCAAACC 59.830 50.000 0.00 0.00 0.00 3.27
305 306 1.137479 TCCGAGCCTAATACCAAACCG 59.863 52.381 0.00 0.00 0.00 4.44
306 307 1.137479 CCGAGCCTAATACCAAACCGA 59.863 52.381 0.00 0.00 0.00 4.69
307 308 2.199236 CGAGCCTAATACCAAACCGAC 58.801 52.381 0.00 0.00 0.00 4.79
308 309 2.558378 GAGCCTAATACCAAACCGACC 58.442 52.381 0.00 0.00 0.00 4.79
309 310 2.169978 GAGCCTAATACCAAACCGACCT 59.830 50.000 0.00 0.00 0.00 3.85
310 311 2.169978 AGCCTAATACCAAACCGACCTC 59.830 50.000 0.00 0.00 0.00 3.85
311 312 2.817901 CCTAATACCAAACCGACCTCG 58.182 52.381 0.00 0.00 39.44 4.63
312 313 2.199236 CTAATACCAAACCGACCTCGC 58.801 52.381 0.00 0.00 38.18 5.03
313 314 0.322322 AATACCAAACCGACCTCGCA 59.678 50.000 0.00 0.00 38.18 5.10
314 315 0.390735 ATACCAAACCGACCTCGCAC 60.391 55.000 0.00 0.00 38.18 5.34
315 316 2.438951 TACCAAACCGACCTCGCACC 62.439 60.000 0.00 0.00 38.18 5.01
316 317 2.030562 CAAACCGACCTCGCACCT 59.969 61.111 0.00 0.00 38.18 4.00
317 318 1.290955 CAAACCGACCTCGCACCTA 59.709 57.895 0.00 0.00 38.18 3.08
318 319 0.320073 CAAACCGACCTCGCACCTAA 60.320 55.000 0.00 0.00 38.18 2.69
319 320 0.037605 AAACCGACCTCGCACCTAAG 60.038 55.000 0.00 0.00 38.18 2.18
320 321 2.202756 CCGACCTCGCACCTAAGC 60.203 66.667 0.00 0.00 38.18 3.09
321 322 2.202756 CGACCTCGCACCTAAGCC 60.203 66.667 0.00 0.00 0.00 4.35
322 323 2.711922 CGACCTCGCACCTAAGCCT 61.712 63.158 0.00 0.00 0.00 4.58
323 324 1.381928 CGACCTCGCACCTAAGCCTA 61.382 60.000 0.00 0.00 0.00 3.93
324 325 0.822164 GACCTCGCACCTAAGCCTAA 59.178 55.000 0.00 0.00 0.00 2.69
325 326 0.535797 ACCTCGCACCTAAGCCTAAC 59.464 55.000 0.00 0.00 0.00 2.34
326 327 0.535335 CCTCGCACCTAAGCCTAACA 59.465 55.000 0.00 0.00 0.00 2.41
327 328 1.139058 CCTCGCACCTAAGCCTAACAT 59.861 52.381 0.00 0.00 0.00 2.71
328 329 2.420129 CCTCGCACCTAAGCCTAACATT 60.420 50.000 0.00 0.00 0.00 2.71
329 330 3.270877 CTCGCACCTAAGCCTAACATTT 58.729 45.455 0.00 0.00 0.00 2.32
330 331 4.439057 CTCGCACCTAAGCCTAACATTTA 58.561 43.478 0.00 0.00 0.00 1.40
331 332 4.834534 TCGCACCTAAGCCTAACATTTAA 58.165 39.130 0.00 0.00 0.00 1.52
332 333 5.247084 TCGCACCTAAGCCTAACATTTAAA 58.753 37.500 0.00 0.00 0.00 1.52
333 334 5.706369 TCGCACCTAAGCCTAACATTTAAAA 59.294 36.000 0.00 0.00 0.00 1.52
334 335 5.798434 CGCACCTAAGCCTAACATTTAAAAC 59.202 40.000 0.00 0.00 0.00 2.43
335 336 6.097356 GCACCTAAGCCTAACATTTAAAACC 58.903 40.000 0.00 0.00 0.00 3.27
336 337 6.319399 CACCTAAGCCTAACATTTAAAACCG 58.681 40.000 0.00 0.00 0.00 4.44
337 338 5.416639 ACCTAAGCCTAACATTTAAAACCGG 59.583 40.000 0.00 0.00 0.00 5.28
338 339 5.648960 CCTAAGCCTAACATTTAAAACCGGA 59.351 40.000 9.46 0.00 0.00 5.14
339 340 6.320418 CCTAAGCCTAACATTTAAAACCGGAT 59.680 38.462 9.46 0.00 0.00 4.18
340 341 5.576447 AGCCTAACATTTAAAACCGGATG 57.424 39.130 9.46 2.00 0.00 3.51
341 342 4.109766 GCCTAACATTTAAAACCGGATGC 58.890 43.478 9.46 0.00 0.00 3.91
342 343 4.678622 CCTAACATTTAAAACCGGATGCC 58.321 43.478 9.46 0.00 0.00 4.40
343 344 3.603158 AACATTTAAAACCGGATGCCC 57.397 42.857 9.46 0.00 0.00 5.36
344 345 1.828595 ACATTTAAAACCGGATGCCCC 59.171 47.619 9.46 0.00 0.00 5.80
345 346 1.827969 CATTTAAAACCGGATGCCCCA 59.172 47.619 9.46 0.00 34.14 4.96
346 347 1.551452 TTTAAAACCGGATGCCCCAG 58.449 50.000 9.46 0.00 34.14 4.45
347 348 0.968393 TTAAAACCGGATGCCCCAGC 60.968 55.000 9.46 0.00 40.48 4.85
348 349 2.847366 TAAAACCGGATGCCCCAGCC 62.847 60.000 9.46 0.00 38.69 4.85
354 355 4.764771 GATGCCCCAGCCAAGCCA 62.765 66.667 0.00 0.00 38.69 4.75
355 356 4.084147 ATGCCCCAGCCAAGCCAT 62.084 61.111 0.00 0.00 38.69 4.40
358 359 2.682846 CCCCAGCCAAGCCATGTA 59.317 61.111 0.00 0.00 0.00 2.29
359 360 1.754234 CCCCAGCCAAGCCATGTAC 60.754 63.158 0.00 0.00 0.00 2.90
360 361 1.754234 CCCAGCCAAGCCATGTACC 60.754 63.158 0.00 0.00 0.00 3.34
361 362 1.304282 CCAGCCAAGCCATGTACCT 59.696 57.895 0.00 0.00 0.00 3.08
362 363 1.033746 CCAGCCAAGCCATGTACCTG 61.034 60.000 0.00 0.00 0.00 4.00
363 364 1.033746 CAGCCAAGCCATGTACCTGG 61.034 60.000 12.50 12.50 39.45 4.45
364 365 1.000896 GCCAAGCCATGTACCTGGT 60.001 57.895 17.29 4.05 38.63 4.00
365 366 1.032114 GCCAAGCCATGTACCTGGTC 61.032 60.000 17.29 10.33 38.63 4.02
366 367 0.620556 CCAAGCCATGTACCTGGTCT 59.379 55.000 17.29 12.16 38.63 3.85
367 368 1.679944 CCAAGCCATGTACCTGGTCTG 60.680 57.143 17.29 13.89 38.63 3.51
368 369 0.620556 AAGCCATGTACCTGGTCTGG 59.379 55.000 17.29 10.49 38.63 3.86
369 370 1.224592 GCCATGTACCTGGTCTGGG 59.775 63.158 17.29 11.81 38.63 4.45
370 371 1.915228 CCATGTACCTGGTCTGGGG 59.085 63.158 0.63 0.00 0.00 4.96
371 372 1.224592 CATGTACCTGGTCTGGGGC 59.775 63.158 0.63 0.00 0.00 5.80
372 373 1.229820 ATGTACCTGGTCTGGGGCA 60.230 57.895 0.63 0.00 0.00 5.36
373 374 1.562672 ATGTACCTGGTCTGGGGCAC 61.563 60.000 0.63 0.00 0.00 5.01
374 375 2.205749 TACCTGGTCTGGGGCACA 59.794 61.111 0.63 0.00 0.00 4.57
375 376 2.221299 TACCTGGTCTGGGGCACAC 61.221 63.158 0.63 0.00 0.00 3.82
376 377 2.974435 TACCTGGTCTGGGGCACACA 62.974 60.000 0.63 0.00 0.00 3.72
377 378 2.281761 CTGGTCTGGGGCACACAC 60.282 66.667 0.00 0.00 0.00 3.82
378 379 3.850098 CTGGTCTGGGGCACACACC 62.850 68.421 7.30 7.30 38.51 4.16
379 380 3.884774 GGTCTGGGGCACACACCA 61.885 66.667 9.53 0.00 37.99 4.17
383 384 3.884774 TGGGGCACACACCAGTCC 61.885 66.667 0.00 0.00 31.92 3.85
385 386 3.936203 GGGCACACACCAGTCCGA 61.936 66.667 0.00 0.00 0.00 4.55
386 387 2.665185 GGCACACACCAGTCCGAC 60.665 66.667 0.00 0.00 0.00 4.79
387 388 3.036084 GCACACACCAGTCCGACG 61.036 66.667 0.00 0.00 0.00 5.12
388 389 3.036084 CACACACCAGTCCGACGC 61.036 66.667 0.00 0.00 0.00 5.19
389 390 3.533105 ACACACCAGTCCGACGCA 61.533 61.111 0.00 0.00 0.00 5.24
390 391 3.036084 CACACCAGTCCGACGCAC 61.036 66.667 0.00 0.00 0.00 5.34
391 392 3.224324 ACACCAGTCCGACGCACT 61.224 61.111 0.00 0.00 0.00 4.40
392 393 2.430921 CACCAGTCCGACGCACTC 60.431 66.667 0.00 0.00 0.00 3.51
393 394 2.597805 ACCAGTCCGACGCACTCT 60.598 61.111 0.00 0.00 0.00 3.24
394 395 2.179517 CCAGTCCGACGCACTCTC 59.820 66.667 0.00 0.00 0.00 3.20
395 396 2.626780 CCAGTCCGACGCACTCTCA 61.627 63.158 0.00 0.00 0.00 3.27
396 397 1.154131 CAGTCCGACGCACTCTCAG 60.154 63.158 0.00 0.00 0.00 3.35
397 398 1.302591 AGTCCGACGCACTCTCAGA 60.303 57.895 0.00 0.00 0.00 3.27
398 399 1.135731 GTCCGACGCACTCTCAGAG 59.864 63.158 0.00 0.00 35.52 3.35
399 400 2.041115 TCCGACGCACTCTCAGAGG 61.041 63.158 6.64 0.00 33.35 3.69
400 401 2.202544 CGACGCACTCTCAGAGGC 60.203 66.667 6.64 5.87 33.35 4.70
401 402 2.183046 GACGCACTCTCAGAGGCC 59.817 66.667 6.64 0.00 33.35 5.19
402 403 3.691744 GACGCACTCTCAGAGGCCG 62.692 68.421 6.64 10.44 34.94 6.13
404 405 4.828925 GCACTCTCAGAGGCCGCC 62.829 72.222 6.64 0.00 33.35 6.13
405 406 4.504916 CACTCTCAGAGGCCGCCG 62.505 72.222 6.64 0.00 33.35 6.46
419 420 3.573491 GCCGCCGCCATCTTACAC 61.573 66.667 0.00 0.00 0.00 2.90
420 421 2.895372 CCGCCGCCATCTTACACC 60.895 66.667 0.00 0.00 0.00 4.16
421 422 3.261951 CGCCGCCATCTTACACCG 61.262 66.667 0.00 0.00 0.00 4.94
422 423 2.185867 GCCGCCATCTTACACCGA 59.814 61.111 0.00 0.00 0.00 4.69
423 424 1.227556 GCCGCCATCTTACACCGAT 60.228 57.895 0.00 0.00 0.00 4.18
424 425 1.222115 GCCGCCATCTTACACCGATC 61.222 60.000 0.00 0.00 0.00 3.69
425 426 0.104120 CCGCCATCTTACACCGATCA 59.896 55.000 0.00 0.00 0.00 2.92
426 427 1.270305 CCGCCATCTTACACCGATCAT 60.270 52.381 0.00 0.00 0.00 2.45
427 428 1.794701 CGCCATCTTACACCGATCATG 59.205 52.381 0.00 0.00 0.00 3.07
428 429 2.545742 CGCCATCTTACACCGATCATGA 60.546 50.000 0.00 0.00 0.00 3.07
429 430 2.802816 GCCATCTTACACCGATCATGAC 59.197 50.000 0.00 0.00 0.00 3.06
430 431 3.741075 GCCATCTTACACCGATCATGACA 60.741 47.826 0.00 0.00 0.00 3.58
431 432 3.804325 CCATCTTACACCGATCATGACAC 59.196 47.826 0.00 0.00 0.00 3.67
432 433 4.432712 CATCTTACACCGATCATGACACA 58.567 43.478 0.00 0.00 0.00 3.72
433 434 3.845178 TCTTACACCGATCATGACACAC 58.155 45.455 0.00 0.00 0.00 3.82
434 435 3.509967 TCTTACACCGATCATGACACACT 59.490 43.478 0.00 0.00 0.00 3.55
435 436 4.703093 TCTTACACCGATCATGACACACTA 59.297 41.667 0.00 0.00 0.00 2.74
436 437 5.359860 TCTTACACCGATCATGACACACTAT 59.640 40.000 0.00 0.00 0.00 2.12
437 438 6.544564 TCTTACACCGATCATGACACACTATA 59.455 38.462 0.00 0.00 0.00 1.31
438 439 5.592104 ACACCGATCATGACACACTATAA 57.408 39.130 0.00 0.00 0.00 0.98
439 440 5.972935 ACACCGATCATGACACACTATAAA 58.027 37.500 0.00 0.00 0.00 1.40
440 441 6.582636 ACACCGATCATGACACACTATAAAT 58.417 36.000 0.00 0.00 0.00 1.40
441 442 6.479990 ACACCGATCATGACACACTATAAATG 59.520 38.462 0.00 0.00 0.00 2.32
442 443 6.479990 CACCGATCATGACACACTATAAATGT 59.520 38.462 0.00 0.00 0.00 2.71
453 454 7.041187 CACACTATAAATGTGCTTTGCAAAG 57.959 36.000 30.70 30.70 41.47 2.77
454 455 6.862608 CACACTATAAATGTGCTTTGCAAAGA 59.137 34.615 37.14 20.42 41.47 2.52
455 456 7.543172 CACACTATAAATGTGCTTTGCAAAGAT 59.457 33.333 37.14 23.06 41.47 2.40
456 457 8.090214 ACACTATAAATGTGCTTTGCAAAGATT 58.910 29.630 37.14 25.41 41.47 2.40
457 458 8.377681 CACTATAAATGTGCTTTGCAAAGATTG 58.622 33.333 37.14 22.73 41.47 2.67
458 459 8.306038 ACTATAAATGTGCTTTGCAAAGATTGA 58.694 29.630 37.14 22.65 41.47 2.57
459 460 7.966246 ATAAATGTGCTTTGCAAAGATTGAA 57.034 28.000 37.14 20.55 41.47 2.69
460 461 6.680874 AAATGTGCTTTGCAAAGATTGAAA 57.319 29.167 37.14 18.30 41.47 2.69
461 462 6.680874 AATGTGCTTTGCAAAGATTGAAAA 57.319 29.167 37.14 17.37 41.47 2.29
462 463 6.870971 ATGTGCTTTGCAAAGATTGAAAAT 57.129 29.167 37.14 18.59 41.47 1.82
463 464 7.966246 ATGTGCTTTGCAAAGATTGAAAATA 57.034 28.000 37.14 15.10 41.47 1.40
464 465 7.783090 TGTGCTTTGCAAAGATTGAAAATAA 57.217 28.000 37.14 10.96 41.47 1.40
465 466 8.380743 TGTGCTTTGCAAAGATTGAAAATAAT 57.619 26.923 37.14 0.00 41.47 1.28
466 467 9.486497 TGTGCTTTGCAAAGATTGAAAATAATA 57.514 25.926 37.14 9.17 41.47 0.98
467 468 9.745323 GTGCTTTGCAAAGATTGAAAATAATAC 57.255 29.630 37.14 17.34 41.47 1.89
468 469 8.934825 TGCTTTGCAAAGATTGAAAATAATACC 58.065 29.630 37.14 16.77 37.54 2.73
469 470 8.110002 GCTTTGCAAAGATTGAAAATAATACCG 58.890 33.333 37.14 10.20 37.54 4.02
470 471 9.139174 CTTTGCAAAGATTGAAAATAATACCGT 57.861 29.630 31.24 0.00 37.54 4.83
471 472 8.459521 TTGCAAAGATTGAAAATAATACCGTG 57.540 30.769 0.00 0.00 0.00 4.94
472 473 7.821652 TGCAAAGATTGAAAATAATACCGTGA 58.178 30.769 0.00 0.00 0.00 4.35
473 474 7.753132 TGCAAAGATTGAAAATAATACCGTGAC 59.247 33.333 0.00 0.00 0.00 3.67
474 475 7.753132 GCAAAGATTGAAAATAATACCGTGACA 59.247 33.333 0.00 0.00 0.00 3.58
475 476 9.277565 CAAAGATTGAAAATAATACCGTGACAG 57.722 33.333 0.00 0.00 0.00 3.51
476 477 7.553881 AGATTGAAAATAATACCGTGACAGG 57.446 36.000 0.00 0.00 37.30 4.00
477 478 7.335627 AGATTGAAAATAATACCGTGACAGGA 58.664 34.615 0.00 0.00 34.73 3.86
537 539 6.145807 CGATTAACGGATCTCATCATTCAC 57.854 41.667 0.00 0.00 38.46 3.18
540 542 3.085443 ACGGATCTCATCATTCACGAC 57.915 47.619 0.00 0.00 0.00 4.34
549 551 1.206578 CATTCACGACGGTTGGTGC 59.793 57.895 0.00 0.00 34.20 5.01
572 574 5.449177 GCGCTGATCCTTTAAGTTTTAGCAT 60.449 40.000 0.00 0.00 0.00 3.79
578 580 6.721571 TCCTTTAAGTTTTAGCATGACGAG 57.278 37.500 0.00 0.00 0.00 4.18
587 589 0.179000 AGCATGACGAGTTCCCATCC 59.821 55.000 0.00 0.00 0.00 3.51
609 611 9.388506 CATCCATCTACTTCAACAAATTCTACT 57.611 33.333 0.00 0.00 0.00 2.57
615 617 6.686130 ACTTCAACAAATTCTACTACGACG 57.314 37.500 0.00 0.00 0.00 5.12
622 624 7.737525 ACAAATTCTACTACGACGAGATTTC 57.262 36.000 0.00 0.00 0.00 2.17
627 629 1.189403 CTACGACGAGATTTCACCGC 58.811 55.000 0.00 0.00 0.00 5.68
630 632 1.140407 CGACGAGATTTCACCGCCTC 61.140 60.000 0.00 0.00 0.00 4.70
631 633 0.806492 GACGAGATTTCACCGCCTCC 60.806 60.000 0.00 0.00 0.00 4.30
681 684 1.595993 TTCGGCTCGCTCTAGTGCTT 61.596 55.000 14.40 0.00 0.00 3.91
688 691 2.939756 CTCGCTCTAGTGCTTCTAGTCA 59.060 50.000 14.40 0.00 44.59 3.41
694 697 6.102663 GCTCTAGTGCTTCTAGTCATTGAAA 58.897 40.000 9.52 0.00 44.59 2.69
702 705 5.389935 GCTTCTAGTCATTGAAAGTTGGACG 60.390 44.000 0.00 0.00 33.84 4.79
712 717 7.486551 TCATTGAAAGTTGGACGTTGTTAAAAG 59.513 33.333 0.00 0.00 0.00 2.27
718 723 7.614124 AGTTGGACGTTGTTAAAAGAAACTA 57.386 32.000 0.00 0.00 0.00 2.24
794 800 3.941483 GTGGACCATGACAATTGGAGTAG 59.059 47.826 10.83 0.00 37.69 2.57
839 850 7.807977 ATATTTTCTCCATGACGCTGTAAAT 57.192 32.000 0.00 0.00 0.00 1.40
939 952 3.485463 AGTTCAATCGGTCACCTCAAA 57.515 42.857 0.00 0.00 0.00 2.69
1051 1099 1.139058 AGCTGGTCGTGAACAACTTCT 59.861 47.619 0.00 0.00 0.00 2.85
1133 1181 3.443925 CGACGAGCTGCTCTCCCA 61.444 66.667 25.59 0.00 38.62 4.37
1416 1919 4.720902 CTGCACCACATCCCGCCA 62.721 66.667 0.00 0.00 0.00 5.69
1474 1977 0.248498 GATCATCTTCGCGACCGTCA 60.248 55.000 9.15 0.00 35.54 4.35
1854 2358 2.042831 GCTCCGGCTCAAGCACATT 61.043 57.895 7.94 0.00 44.36 2.71
2089 2593 1.208052 GCAGGAGGATCAAGCTGTACA 59.792 52.381 0.00 0.00 36.25 2.90
2157 2661 2.107750 CGGGCAGTGATCGATGCT 59.892 61.111 18.20 0.00 42.19 3.79
2193 2697 1.078759 GCCTGTCGGATGAGAACGTG 61.079 60.000 0.00 0.00 0.00 4.49
2361 2865 3.434319 GCCGTGTGGGAGTGCATG 61.434 66.667 0.00 0.00 38.47 4.06
2389 2893 0.597637 CAGCGACGTCACCACTCTTT 60.598 55.000 17.16 0.00 0.00 2.52
2495 3007 8.094798 TCACTGCTTTAATGATCTAAACGTTT 57.905 30.769 18.90 18.90 0.00 3.60
2543 3055 0.744414 GCAGGCTAAAGCGATGGTGA 60.744 55.000 7.61 0.00 43.26 4.02
2561 3074 6.605471 TGGTGAATGTACAAGAGTATGACT 57.395 37.500 0.00 0.00 31.84 3.41
2644 3157 7.439157 TTGCTATACTATTCATGGCATTGTC 57.561 36.000 0.00 0.00 39.28 3.18
2794 3307 8.848474 AAAAATGATTATATACCTCCGTCCAG 57.152 34.615 0.00 0.00 0.00 3.86
2795 3308 7.792364 AAATGATTATATACCTCCGTCCAGA 57.208 36.000 0.00 0.00 0.00 3.86
2796 3309 7.792364 AATGATTATATACCTCCGTCCAGAA 57.208 36.000 0.00 0.00 0.00 3.02
2797 3310 7.792364 ATGATTATATACCTCCGTCCAGAAA 57.208 36.000 0.00 0.00 0.00 2.52
2798 3311 7.792364 TGATTATATACCTCCGTCCAGAAAT 57.208 36.000 0.00 0.00 0.00 2.17
2799 3312 8.888836 TGATTATATACCTCCGTCCAGAAATA 57.111 34.615 0.00 0.00 0.00 1.40
2800 3313 9.316594 TGATTATATACCTCCGTCCAGAAATAA 57.683 33.333 0.00 0.00 0.00 1.40
2801 3314 9.804758 GATTATATACCTCCGTCCAGAAATAAG 57.195 37.037 0.00 0.00 0.00 1.73
2803 3316 3.611766 ACCTCCGTCCAGAAATAAGTG 57.388 47.619 0.00 0.00 0.00 3.16
2805 3318 3.056035 ACCTCCGTCCAGAAATAAGTGAC 60.056 47.826 0.00 0.00 0.00 3.67
2806 3319 3.056107 CCTCCGTCCAGAAATAAGTGACA 60.056 47.826 0.00 0.00 0.00 3.58
2807 3320 4.562757 CCTCCGTCCAGAAATAAGTGACAA 60.563 45.833 0.00 0.00 0.00 3.18
2808 3321 4.312443 TCCGTCCAGAAATAAGTGACAAC 58.688 43.478 0.00 0.00 0.00 3.32
2810 3323 3.739300 CGTCCAGAAATAAGTGACAACGT 59.261 43.478 0.00 0.00 0.00 3.99
2811 3324 4.210537 CGTCCAGAAATAAGTGACAACGTT 59.789 41.667 0.00 0.00 0.00 3.99
2812 3325 5.277154 CGTCCAGAAATAAGTGACAACGTTT 60.277 40.000 0.00 0.00 0.00 3.60
2813 3326 6.492254 GTCCAGAAATAAGTGACAACGTTTT 58.508 36.000 0.00 0.00 0.00 2.43
2814 3327 7.517101 CGTCCAGAAATAAGTGACAACGTTTTA 60.517 37.037 0.00 0.00 0.00 1.52
2815 3328 8.287503 GTCCAGAAATAAGTGACAACGTTTTAT 58.712 33.333 0.00 0.00 0.00 1.40
2816 3329 9.491675 TCCAGAAATAAGTGACAACGTTTTATA 57.508 29.630 0.00 0.00 0.00 0.98
2862 3375 8.661352 CACATTATAGTGTGTTGATACATCCA 57.339 34.615 17.72 0.00 43.43 3.41
2863 3376 9.276590 CACATTATAGTGTGTTGATACATCCAT 57.723 33.333 17.72 0.00 43.43 3.41
3296 3809 3.755155 GCCCCATCTAAGCCCATGTATTT 60.755 47.826 0.00 0.00 0.00 1.40
3309 3822 5.125417 GCCCATGTATTTCTTACTTTGAGCA 59.875 40.000 0.00 0.00 0.00 4.26
3348 3861 9.362539 GAGATGAACACAATGCATAATTTTTCT 57.637 29.630 0.00 0.00 0.00 2.52
3355 3868 7.485913 ACACAATGCATAATTTTTCTAGCTTCG 59.514 33.333 0.00 0.00 0.00 3.79
3358 3871 4.202010 TGCATAATTTTTCTAGCTTCGCCC 60.202 41.667 0.00 0.00 0.00 6.13
3359 3872 4.036852 GCATAATTTTTCTAGCTTCGCCCT 59.963 41.667 0.00 0.00 0.00 5.19
3362 3875 3.688694 TTTTTCTAGCTTCGCCCTGTA 57.311 42.857 0.00 0.00 0.00 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.499004 TCCTAACTCCTAACAAAGCATGT 57.501 39.130 0.00 0.00 46.82 3.21
1 2 7.396540 AATTCCTAACTCCTAACAAAGCATG 57.603 36.000 0.00 0.00 0.00 4.06
2 3 9.700831 ATTAATTCCTAACTCCTAACAAAGCAT 57.299 29.630 0.00 0.00 0.00 3.79
3 4 9.174166 GATTAATTCCTAACTCCTAACAAAGCA 57.826 33.333 0.00 0.00 0.00 3.91
4 5 9.397280 AGATTAATTCCTAACTCCTAACAAAGC 57.603 33.333 0.00 0.00 0.00 3.51
6 7 9.901172 GGAGATTAATTCCTAACTCCTAACAAA 57.099 33.333 10.10 0.00 36.21 2.83
7 8 9.053472 TGGAGATTAATTCCTAACTCCTAACAA 57.947 33.333 15.77 0.00 37.97 2.83
8 9 8.618240 TGGAGATTAATTCCTAACTCCTAACA 57.382 34.615 15.77 0.00 37.97 2.41
9 10 9.327628 GTTGGAGATTAATTCCTAACTCCTAAC 57.672 37.037 15.77 13.97 37.97 2.34
10 11 9.053472 TGTTGGAGATTAATTCCTAACTCCTAA 57.947 33.333 15.77 8.62 37.97 2.69
11 12 8.618240 TGTTGGAGATTAATTCCTAACTCCTA 57.382 34.615 15.77 8.61 37.97 2.94
12 13 7.510675 TGTTGGAGATTAATTCCTAACTCCT 57.489 36.000 15.77 0.00 37.97 3.69
13 14 9.274206 GTATGTTGGAGATTAATTCCTAACTCC 57.726 37.037 10.35 10.35 37.81 3.85
14 15 9.832445 TGTATGTTGGAGATTAATTCCTAACTC 57.168 33.333 14.07 5.15 35.67 3.01
17 18 9.489084 CGATGTATGTTGGAGATTAATTCCTAA 57.511 33.333 14.07 7.35 35.67 2.69
18 19 8.866093 TCGATGTATGTTGGAGATTAATTCCTA 58.134 33.333 14.07 7.19 35.67 2.94
19 20 7.657761 GTCGATGTATGTTGGAGATTAATTCCT 59.342 37.037 14.07 0.00 35.67 3.36
20 21 7.441157 TGTCGATGTATGTTGGAGATTAATTCC 59.559 37.037 8.79 8.79 35.20 3.01
21 22 8.365399 TGTCGATGTATGTTGGAGATTAATTC 57.635 34.615 0.00 0.00 0.00 2.17
22 23 7.041780 GCTGTCGATGTATGTTGGAGATTAATT 60.042 37.037 0.00 0.00 0.00 1.40
23 24 6.425114 GCTGTCGATGTATGTTGGAGATTAAT 59.575 38.462 0.00 0.00 0.00 1.40
24 25 5.753438 GCTGTCGATGTATGTTGGAGATTAA 59.247 40.000 0.00 0.00 0.00 1.40
25 26 5.069119 AGCTGTCGATGTATGTTGGAGATTA 59.931 40.000 0.00 0.00 0.00 1.75
26 27 4.122776 GCTGTCGATGTATGTTGGAGATT 58.877 43.478 0.00 0.00 0.00 2.40
27 28 3.386078 AGCTGTCGATGTATGTTGGAGAT 59.614 43.478 0.00 0.00 0.00 2.75
28 29 2.760650 AGCTGTCGATGTATGTTGGAGA 59.239 45.455 0.00 0.00 0.00 3.71
29 30 3.119291 GAGCTGTCGATGTATGTTGGAG 58.881 50.000 0.00 0.00 0.00 3.86
30 31 2.495669 TGAGCTGTCGATGTATGTTGGA 59.504 45.455 0.00 0.00 0.00 3.53
31 32 2.862536 CTGAGCTGTCGATGTATGTTGG 59.137 50.000 0.00 0.00 0.00 3.77
32 33 2.862536 CCTGAGCTGTCGATGTATGTTG 59.137 50.000 0.00 0.00 0.00 3.33
33 34 2.739932 GCCTGAGCTGTCGATGTATGTT 60.740 50.000 0.00 0.00 35.50 2.71
34 35 1.202463 GCCTGAGCTGTCGATGTATGT 60.202 52.381 0.00 0.00 35.50 2.29
35 36 1.202452 TGCCTGAGCTGTCGATGTATG 60.202 52.381 0.00 0.00 40.80 2.39
36 37 1.114627 TGCCTGAGCTGTCGATGTAT 58.885 50.000 0.00 0.00 40.80 2.29
37 38 1.114627 ATGCCTGAGCTGTCGATGTA 58.885 50.000 0.00 0.00 40.80 2.29
38 39 1.114627 TATGCCTGAGCTGTCGATGT 58.885 50.000 0.00 0.00 40.80 3.06
39 40 1.863454 GTTATGCCTGAGCTGTCGATG 59.137 52.381 0.00 0.00 40.80 3.84
40 41 1.202580 GGTTATGCCTGAGCTGTCGAT 60.203 52.381 0.00 0.00 40.80 3.59
41 42 0.175760 GGTTATGCCTGAGCTGTCGA 59.824 55.000 0.00 0.00 40.80 4.20
42 43 1.148157 CGGTTATGCCTGAGCTGTCG 61.148 60.000 0.00 0.00 40.80 4.35
43 44 0.108138 ACGGTTATGCCTGAGCTGTC 60.108 55.000 0.00 0.00 40.80 3.51
44 45 0.391661 CACGGTTATGCCTGAGCTGT 60.392 55.000 0.00 0.00 40.80 4.40
45 46 1.709147 GCACGGTTATGCCTGAGCTG 61.709 60.000 0.00 0.00 39.86 4.24
46 47 1.450312 GCACGGTTATGCCTGAGCT 60.450 57.895 0.00 0.00 39.86 4.09
47 48 1.745115 TGCACGGTTATGCCTGAGC 60.745 57.895 0.00 0.00 45.50 4.26
48 49 1.369091 GGTGCACGGTTATGCCTGAG 61.369 60.000 11.45 0.00 45.50 3.35
49 50 1.376683 GGTGCACGGTTATGCCTGA 60.377 57.895 11.45 0.00 45.50 3.86
50 51 1.031571 ATGGTGCACGGTTATGCCTG 61.032 55.000 11.45 0.00 45.50 4.85
51 52 1.031571 CATGGTGCACGGTTATGCCT 61.032 55.000 11.45 0.00 45.50 4.75
52 53 1.433064 CATGGTGCACGGTTATGCC 59.567 57.895 11.45 0.00 45.50 4.40
53 54 1.029408 TCCATGGTGCACGGTTATGC 61.029 55.000 12.58 0.00 46.32 3.14
54 55 1.679139 ATCCATGGTGCACGGTTATG 58.321 50.000 12.58 12.01 0.00 1.90
55 56 2.023673 CAATCCATGGTGCACGGTTAT 58.976 47.619 12.58 0.00 0.00 1.89
56 57 1.003696 TCAATCCATGGTGCACGGTTA 59.996 47.619 12.58 0.00 0.00 2.85
57 58 0.251121 TCAATCCATGGTGCACGGTT 60.251 50.000 12.58 0.00 0.00 4.44
58 59 0.034186 ATCAATCCATGGTGCACGGT 60.034 50.000 12.58 0.00 0.00 4.83
59 60 1.965935 TATCAATCCATGGTGCACGG 58.034 50.000 12.58 6.85 0.00 4.94
60 61 2.880268 ACATATCAATCCATGGTGCACG 59.120 45.455 12.58 0.00 0.00 5.34
61 62 3.884693 TGACATATCAATCCATGGTGCAC 59.115 43.478 12.58 8.80 0.00 4.57
62 63 4.167652 TGACATATCAATCCATGGTGCA 57.832 40.909 12.58 0.99 0.00 4.57
63 64 4.082408 CCATGACATATCAATCCATGGTGC 60.082 45.833 12.58 0.00 45.50 5.01
64 65 5.638596 CCATGACATATCAATCCATGGTG 57.361 43.478 12.58 3.51 45.50 4.17
67 68 6.661805 TCCATTCCATGACATATCAATCCATG 59.338 38.462 0.00 0.00 38.69 3.66
68 69 6.662234 GTCCATTCCATGACATATCAATCCAT 59.338 38.462 0.00 0.00 38.69 3.41
69 70 6.005823 GTCCATTCCATGACATATCAATCCA 58.994 40.000 0.00 0.00 38.69 3.41
70 71 5.122869 CGTCCATTCCATGACATATCAATCC 59.877 44.000 0.00 0.00 38.69 3.01
71 72 5.934043 TCGTCCATTCCATGACATATCAATC 59.066 40.000 0.00 0.00 38.69 2.67
72 73 5.702670 GTCGTCCATTCCATGACATATCAAT 59.297 40.000 0.00 0.00 38.69 2.57
73 74 5.056480 GTCGTCCATTCCATGACATATCAA 58.944 41.667 0.00 0.00 38.69 2.57
74 75 4.100808 TGTCGTCCATTCCATGACATATCA 59.899 41.667 0.00 0.00 35.32 2.15
75 76 4.449068 GTGTCGTCCATTCCATGACATATC 59.551 45.833 0.00 0.00 40.91 1.63
76 77 4.141733 TGTGTCGTCCATTCCATGACATAT 60.142 41.667 0.00 0.00 40.91 1.78
77 78 3.196685 TGTGTCGTCCATTCCATGACATA 59.803 43.478 0.00 0.00 40.91 2.29
78 79 2.027285 TGTGTCGTCCATTCCATGACAT 60.027 45.455 0.00 0.00 40.91 3.06
79 80 1.346068 TGTGTCGTCCATTCCATGACA 59.654 47.619 0.00 0.00 37.43 3.58
80 81 1.732259 GTGTGTCGTCCATTCCATGAC 59.268 52.381 0.00 0.00 0.00 3.06
81 82 1.623311 AGTGTGTCGTCCATTCCATGA 59.377 47.619 0.00 0.00 0.00 3.07
82 83 2.099141 AGTGTGTCGTCCATTCCATG 57.901 50.000 0.00 0.00 0.00 3.66
83 84 5.607939 TTATAGTGTGTCGTCCATTCCAT 57.392 39.130 0.00 0.00 0.00 3.41
84 85 5.408880 TTTATAGTGTGTCGTCCATTCCA 57.591 39.130 0.00 0.00 0.00 3.53
85 86 6.920569 AATTTATAGTGTGTCGTCCATTCC 57.079 37.500 0.00 0.00 0.00 3.01
86 87 7.908601 GGAAAATTTATAGTGTGTCGTCCATTC 59.091 37.037 0.00 0.00 0.00 2.67
87 88 7.610305 AGGAAAATTTATAGTGTGTCGTCCATT 59.390 33.333 0.00 0.00 0.00 3.16
88 89 7.110155 AGGAAAATTTATAGTGTGTCGTCCAT 58.890 34.615 0.00 0.00 0.00 3.41
89 90 6.469410 AGGAAAATTTATAGTGTGTCGTCCA 58.531 36.000 0.00 0.00 0.00 4.02
90 91 6.817140 AGAGGAAAATTTATAGTGTGTCGTCC 59.183 38.462 0.00 0.00 0.00 4.79
91 92 7.829378 AGAGGAAAATTTATAGTGTGTCGTC 57.171 36.000 0.00 0.00 0.00 4.20
92 93 8.617290 AAAGAGGAAAATTTATAGTGTGTCGT 57.383 30.769 0.00 0.00 0.00 4.34
93 94 9.893305 AAAAAGAGGAAAATTTATAGTGTGTCG 57.107 29.630 0.00 0.00 0.00 4.35
117 118 4.099419 GCAGGTCTTCCTCCTTTTCAAAAA 59.901 41.667 0.00 0.00 43.07 1.94
118 119 3.636764 GCAGGTCTTCCTCCTTTTCAAAA 59.363 43.478 0.00 0.00 43.07 2.44
119 120 3.222603 GCAGGTCTTCCTCCTTTTCAAA 58.777 45.455 0.00 0.00 43.07 2.69
120 121 2.810400 CGCAGGTCTTCCTCCTTTTCAA 60.810 50.000 0.00 0.00 43.07 2.69
121 122 1.270839 CGCAGGTCTTCCTCCTTTTCA 60.271 52.381 0.00 0.00 43.07 2.69
122 123 1.443802 CGCAGGTCTTCCTCCTTTTC 58.556 55.000 0.00 0.00 43.07 2.29
123 124 3.633361 CGCAGGTCTTCCTCCTTTT 57.367 52.632 0.00 0.00 43.07 2.27
137 138 2.895865 CAGATGCAGAGGCCGCAG 60.896 66.667 9.88 0.66 43.88 5.18
138 139 4.478371 CCAGATGCAGAGGCCGCA 62.478 66.667 9.88 7.90 44.94 5.69
139 140 4.166888 TCCAGATGCAGAGGCCGC 62.167 66.667 0.00 0.00 40.13 6.53
140 141 2.202987 GTCCAGATGCAGAGGCCG 60.203 66.667 0.00 0.00 40.13 6.13
141 142 2.037620 ATCGTCCAGATGCAGAGGCC 62.038 60.000 0.00 0.00 38.36 5.19
142 143 1.445095 ATCGTCCAGATGCAGAGGC 59.555 57.895 0.00 0.00 38.36 4.70
150 151 1.019673 GTTGCATGCATCGTCCAGAT 58.980 50.000 23.37 0.00 41.01 2.90
151 152 1.026182 GGTTGCATGCATCGTCCAGA 61.026 55.000 23.37 0.00 0.00 3.86
152 153 1.307355 TGGTTGCATGCATCGTCCAG 61.307 55.000 23.37 0.00 0.00 3.86
153 154 1.303155 TGGTTGCATGCATCGTCCA 60.303 52.632 23.37 22.35 0.00 4.02
154 155 1.137404 GTGGTTGCATGCATCGTCC 59.863 57.895 23.37 20.20 0.00 4.79
155 156 0.523072 AAGTGGTTGCATGCATCGTC 59.477 50.000 23.37 15.79 0.00 4.20
156 157 0.961019 AAAGTGGTTGCATGCATCGT 59.039 45.000 23.37 8.11 0.00 3.73
157 158 2.917701 TAAAGTGGTTGCATGCATCG 57.082 45.000 23.37 0.00 0.00 3.84
158 159 7.775397 AATTAATAAAGTGGTTGCATGCATC 57.225 32.000 23.37 20.66 0.00 3.91
159 160 9.835389 AATAATTAATAAAGTGGTTGCATGCAT 57.165 25.926 23.37 7.12 0.00 3.96
160 161 9.311916 GAATAATTAATAAAGTGGTTGCATGCA 57.688 29.630 18.46 18.46 0.00 3.96
161 162 9.311916 TGAATAATTAATAAAGTGGTTGCATGC 57.688 29.630 11.82 11.82 0.00 4.06
163 164 9.515020 CGTGAATAATTAATAAAGTGGTTGCAT 57.485 29.630 0.00 0.00 0.00 3.96
164 165 8.731605 TCGTGAATAATTAATAAAGTGGTTGCA 58.268 29.630 0.00 0.00 0.00 4.08
165 166 9.562583 TTCGTGAATAATTAATAAAGTGGTTGC 57.437 29.630 0.00 0.00 0.00 4.17
181 182 9.701098 ACTACTTTGTAACATCTTCGTGAATAA 57.299 29.630 0.00 0.00 0.00 1.40
183 184 9.136952 GTACTACTTTGTAACATCTTCGTGAAT 57.863 33.333 0.00 0.00 0.00 2.57
184 185 8.136800 TGTACTACTTTGTAACATCTTCGTGAA 58.863 33.333 0.00 0.00 0.00 3.18
185 186 7.650890 TGTACTACTTTGTAACATCTTCGTGA 58.349 34.615 0.00 0.00 0.00 4.35
186 187 7.862741 TGTACTACTTTGTAACATCTTCGTG 57.137 36.000 0.00 0.00 0.00 4.35
187 188 8.301720 TGATGTACTACTTTGTAACATCTTCGT 58.698 33.333 16.64 0.00 35.10 3.85
188 189 8.683550 TGATGTACTACTTTGTAACATCTTCG 57.316 34.615 16.64 0.00 35.10 3.79
189 190 9.640963 ACTGATGTACTACTTTGTAACATCTTC 57.359 33.333 16.64 2.03 35.10 2.87
194 195 9.903682 GACTTACTGATGTACTACTTTGTAACA 57.096 33.333 0.00 0.00 0.00 2.41
212 213 2.839486 TGGTGGCTTCAGACTTACTG 57.161 50.000 0.00 0.00 46.97 2.74
213 214 3.177228 AGATGGTGGCTTCAGACTTACT 58.823 45.455 0.00 0.00 0.00 2.24
214 215 3.618690 AGATGGTGGCTTCAGACTTAC 57.381 47.619 0.00 0.00 0.00 2.34
215 216 3.307691 CCAAGATGGTGGCTTCAGACTTA 60.308 47.826 0.00 0.00 31.35 2.24
216 217 2.553904 CCAAGATGGTGGCTTCAGACTT 60.554 50.000 0.00 0.00 31.35 3.01
217 218 1.004044 CCAAGATGGTGGCTTCAGACT 59.996 52.381 0.00 0.00 31.35 3.24
218 219 1.457346 CCAAGATGGTGGCTTCAGAC 58.543 55.000 0.00 0.00 31.35 3.51
219 220 3.963733 CCAAGATGGTGGCTTCAGA 57.036 52.632 0.00 0.00 31.35 3.27
226 227 1.475280 CAGATGTTGCCAAGATGGTGG 59.525 52.381 0.00 0.00 40.46 4.61
227 228 2.163010 GACAGATGTTGCCAAGATGGTG 59.837 50.000 0.00 0.00 40.46 4.17
228 229 2.440409 GACAGATGTTGCCAAGATGGT 58.560 47.619 0.00 0.00 40.46 3.55
229 230 1.399440 CGACAGATGTTGCCAAGATGG 59.601 52.381 0.00 0.00 41.55 3.51
230 231 2.819422 CGACAGATGTTGCCAAGATG 57.181 50.000 0.00 0.00 0.00 2.90
238 239 4.979197 GGATAGAAGTAGCGACAGATGTTG 59.021 45.833 0.00 0.00 0.00 3.33
239 240 4.645136 TGGATAGAAGTAGCGACAGATGTT 59.355 41.667 0.00 0.00 0.00 2.71
240 241 4.036971 GTGGATAGAAGTAGCGACAGATGT 59.963 45.833 0.00 0.00 0.00 3.06
241 242 4.277174 AGTGGATAGAAGTAGCGACAGATG 59.723 45.833 0.00 0.00 0.00 2.90
242 243 4.465886 AGTGGATAGAAGTAGCGACAGAT 58.534 43.478 0.00 0.00 0.00 2.90
243 244 3.887352 AGTGGATAGAAGTAGCGACAGA 58.113 45.455 0.00 0.00 0.00 3.41
244 245 4.096532 TCAAGTGGATAGAAGTAGCGACAG 59.903 45.833 0.00 0.00 0.00 3.51
245 246 4.014406 TCAAGTGGATAGAAGTAGCGACA 58.986 43.478 0.00 0.00 0.00 4.35
246 247 4.634184 TCAAGTGGATAGAAGTAGCGAC 57.366 45.455 0.00 0.00 0.00 5.19
247 248 4.887655 TCATCAAGTGGATAGAAGTAGCGA 59.112 41.667 0.00 0.00 33.95 4.93
248 249 5.188327 TCATCAAGTGGATAGAAGTAGCG 57.812 43.478 0.00 0.00 33.95 4.26
249 250 5.988561 CCTTCATCAAGTGGATAGAAGTAGC 59.011 44.000 13.90 0.00 38.31 3.58
250 251 6.463614 CCCCTTCATCAAGTGGATAGAAGTAG 60.464 46.154 13.90 8.25 38.31 2.57
251 252 5.366768 CCCCTTCATCAAGTGGATAGAAGTA 59.633 44.000 13.90 0.00 38.31 2.24
252 253 4.164988 CCCCTTCATCAAGTGGATAGAAGT 59.835 45.833 13.90 0.00 38.31 3.01
253 254 4.164988 ACCCCTTCATCAAGTGGATAGAAG 59.835 45.833 10.48 10.48 38.94 2.85
254 255 4.080356 CACCCCTTCATCAAGTGGATAGAA 60.080 45.833 0.00 0.00 31.72 2.10
255 256 3.455910 CACCCCTTCATCAAGTGGATAGA 59.544 47.826 0.00 0.00 31.72 1.98
256 257 3.813443 CACCCCTTCATCAAGTGGATAG 58.187 50.000 0.00 0.00 31.72 2.08
257 258 2.092429 GCACCCCTTCATCAAGTGGATA 60.092 50.000 0.00 0.00 31.72 2.59
258 259 1.341383 GCACCCCTTCATCAAGTGGAT 60.341 52.381 0.00 0.00 31.72 3.41
259 260 0.038166 GCACCCCTTCATCAAGTGGA 59.962 55.000 0.00 0.00 31.72 4.02
260 261 0.967380 GGCACCCCTTCATCAAGTGG 60.967 60.000 0.00 0.00 33.46 4.00
261 262 1.308069 CGGCACCCCTTCATCAAGTG 61.308 60.000 0.00 0.00 0.00 3.16
262 263 1.002134 CGGCACCCCTTCATCAAGT 60.002 57.895 0.00 0.00 0.00 3.16
263 264 0.107017 ATCGGCACCCCTTCATCAAG 60.107 55.000 0.00 0.00 0.00 3.02
264 265 1.140852 CTATCGGCACCCCTTCATCAA 59.859 52.381 0.00 0.00 0.00 2.57
265 266 0.758734 CTATCGGCACCCCTTCATCA 59.241 55.000 0.00 0.00 0.00 3.07
266 267 0.759346 ACTATCGGCACCCCTTCATC 59.241 55.000 0.00 0.00 0.00 2.92
267 268 0.759346 GACTATCGGCACCCCTTCAT 59.241 55.000 0.00 0.00 0.00 2.57
268 269 1.335132 GGACTATCGGCACCCCTTCA 61.335 60.000 0.00 0.00 0.00 3.02
269 270 1.446366 GGACTATCGGCACCCCTTC 59.554 63.158 0.00 0.00 0.00 3.46
270 271 2.432300 CGGACTATCGGCACCCCTT 61.432 63.158 0.00 0.00 0.00 3.95
271 272 2.838225 CGGACTATCGGCACCCCT 60.838 66.667 0.00 0.00 0.00 4.79
272 273 2.836360 TCGGACTATCGGCACCCC 60.836 66.667 0.00 0.00 0.00 4.95
273 274 2.728817 CTCGGACTATCGGCACCC 59.271 66.667 0.00 0.00 0.00 4.61
274 275 2.027751 GCTCGGACTATCGGCACC 59.972 66.667 0.00 0.00 0.00 5.01
275 276 1.170919 TAGGCTCGGACTATCGGCAC 61.171 60.000 0.00 0.00 0.00 5.01
276 277 0.466739 TTAGGCTCGGACTATCGGCA 60.467 55.000 0.00 0.00 0.00 5.69
277 278 0.889306 ATTAGGCTCGGACTATCGGC 59.111 55.000 0.00 0.00 0.00 5.54
278 279 2.422832 GGTATTAGGCTCGGACTATCGG 59.577 54.545 0.00 0.00 0.00 4.18
279 280 3.079578 TGGTATTAGGCTCGGACTATCG 58.920 50.000 0.00 0.00 0.00 2.92
280 281 5.228665 GTTTGGTATTAGGCTCGGACTATC 58.771 45.833 0.00 0.00 0.00 2.08
281 282 4.040095 GGTTTGGTATTAGGCTCGGACTAT 59.960 45.833 0.00 0.00 0.00 2.12
282 283 3.385755 GGTTTGGTATTAGGCTCGGACTA 59.614 47.826 0.00 0.00 0.00 2.59
283 284 2.169978 GGTTTGGTATTAGGCTCGGACT 59.830 50.000 0.00 0.00 0.00 3.85
284 285 2.558378 GGTTTGGTATTAGGCTCGGAC 58.442 52.381 0.00 0.00 0.00 4.79
285 286 1.137479 CGGTTTGGTATTAGGCTCGGA 59.863 52.381 0.00 0.00 0.00 4.55
286 287 1.137479 TCGGTTTGGTATTAGGCTCGG 59.863 52.381 0.00 0.00 0.00 4.63
287 288 2.199236 GTCGGTTTGGTATTAGGCTCG 58.801 52.381 0.00 0.00 0.00 5.03
288 289 2.169978 AGGTCGGTTTGGTATTAGGCTC 59.830 50.000 0.00 0.00 0.00 4.70
289 290 2.169978 GAGGTCGGTTTGGTATTAGGCT 59.830 50.000 0.00 0.00 0.00 4.58
290 291 2.558378 GAGGTCGGTTTGGTATTAGGC 58.442 52.381 0.00 0.00 0.00 3.93
291 292 2.817901 CGAGGTCGGTTTGGTATTAGG 58.182 52.381 0.00 0.00 35.37 2.69
292 293 2.199236 GCGAGGTCGGTTTGGTATTAG 58.801 52.381 0.89 0.00 40.23 1.73
293 294 1.549620 TGCGAGGTCGGTTTGGTATTA 59.450 47.619 0.89 0.00 40.23 0.98
294 295 0.322322 TGCGAGGTCGGTTTGGTATT 59.678 50.000 0.89 0.00 40.23 1.89
295 296 0.390735 GTGCGAGGTCGGTTTGGTAT 60.391 55.000 0.89 0.00 40.23 2.73
296 297 1.005867 GTGCGAGGTCGGTTTGGTA 60.006 57.895 0.89 0.00 40.23 3.25
297 298 2.280592 GTGCGAGGTCGGTTTGGT 60.281 61.111 0.89 0.00 40.23 3.67
298 299 2.162338 TAGGTGCGAGGTCGGTTTGG 62.162 60.000 0.89 0.00 40.23 3.28
299 300 0.320073 TTAGGTGCGAGGTCGGTTTG 60.320 55.000 0.89 0.00 40.23 2.93
300 301 0.037605 CTTAGGTGCGAGGTCGGTTT 60.038 55.000 0.89 0.00 40.23 3.27
301 302 1.590147 CTTAGGTGCGAGGTCGGTT 59.410 57.895 0.89 0.00 40.23 4.44
302 303 3.003113 GCTTAGGTGCGAGGTCGGT 62.003 63.158 0.89 0.00 40.23 4.69
303 304 2.202756 GCTTAGGTGCGAGGTCGG 60.203 66.667 0.89 0.00 40.23 4.79
304 305 1.381928 TAGGCTTAGGTGCGAGGTCG 61.382 60.000 0.00 0.00 43.27 4.79
305 306 0.822164 TTAGGCTTAGGTGCGAGGTC 59.178 55.000 0.00 0.00 0.00 3.85
306 307 0.535797 GTTAGGCTTAGGTGCGAGGT 59.464 55.000 0.00 0.00 0.00 3.85
307 308 0.535335 TGTTAGGCTTAGGTGCGAGG 59.465 55.000 0.00 0.00 0.00 4.63
308 309 2.604046 ATGTTAGGCTTAGGTGCGAG 57.396 50.000 0.00 0.00 0.00 5.03
309 310 3.343941 AAATGTTAGGCTTAGGTGCGA 57.656 42.857 0.00 0.00 0.00 5.10
310 311 5.554822 TTTAAATGTTAGGCTTAGGTGCG 57.445 39.130 0.00 0.00 0.00 5.34
311 312 6.097356 GGTTTTAAATGTTAGGCTTAGGTGC 58.903 40.000 0.00 0.00 0.00 5.01
312 313 6.319399 CGGTTTTAAATGTTAGGCTTAGGTG 58.681 40.000 0.00 0.00 0.00 4.00
313 314 5.416639 CCGGTTTTAAATGTTAGGCTTAGGT 59.583 40.000 0.00 0.00 0.00 3.08
314 315 5.648960 TCCGGTTTTAAATGTTAGGCTTAGG 59.351 40.000 0.00 0.00 0.00 2.69
315 316 6.746745 TCCGGTTTTAAATGTTAGGCTTAG 57.253 37.500 0.00 0.00 0.00 2.18
316 317 6.404954 GCATCCGGTTTTAAATGTTAGGCTTA 60.405 38.462 0.00 0.00 0.00 3.09
317 318 5.623596 GCATCCGGTTTTAAATGTTAGGCTT 60.624 40.000 0.00 0.00 0.00 4.35
318 319 4.142249 GCATCCGGTTTTAAATGTTAGGCT 60.142 41.667 0.00 0.00 0.00 4.58
319 320 4.109766 GCATCCGGTTTTAAATGTTAGGC 58.890 43.478 0.00 0.00 0.00 3.93
320 321 4.440940 GGGCATCCGGTTTTAAATGTTAGG 60.441 45.833 0.00 0.00 0.00 2.69
321 322 4.440940 GGGGCATCCGGTTTTAAATGTTAG 60.441 45.833 0.00 0.00 0.00 2.34
322 323 3.447944 GGGGCATCCGGTTTTAAATGTTA 59.552 43.478 0.00 0.00 0.00 2.41
323 324 2.235155 GGGGCATCCGGTTTTAAATGTT 59.765 45.455 0.00 0.00 0.00 2.71
324 325 1.828595 GGGGCATCCGGTTTTAAATGT 59.171 47.619 0.00 0.00 0.00 2.71
325 326 1.827969 TGGGGCATCCGGTTTTAAATG 59.172 47.619 0.00 0.00 38.76 2.32
326 327 2.107366 CTGGGGCATCCGGTTTTAAAT 58.893 47.619 0.00 0.00 38.76 1.40
327 328 1.551452 CTGGGGCATCCGGTTTTAAA 58.449 50.000 0.00 0.00 38.76 1.52
328 329 0.968393 GCTGGGGCATCCGGTTTTAA 60.968 55.000 0.00 0.00 43.94 1.52
329 330 1.379309 GCTGGGGCATCCGGTTTTA 60.379 57.895 0.00 0.00 43.94 1.52
330 331 2.679996 GCTGGGGCATCCGGTTTT 60.680 61.111 0.00 0.00 43.94 2.43
331 332 4.759205 GGCTGGGGCATCCGGTTT 62.759 66.667 0.00 0.00 43.94 3.27
337 338 4.764771 TGGCTTGGCTGGGGCATC 62.765 66.667 0.00 0.00 38.08 3.91
338 339 4.084147 ATGGCTTGGCTGGGGCAT 62.084 61.111 7.77 7.77 42.51 4.40
340 341 3.660422 TACATGGCTTGGCTGGGGC 62.660 63.158 5.31 0.00 37.82 5.80
341 342 1.754234 GTACATGGCTTGGCTGGGG 60.754 63.158 5.31 0.00 0.00 4.96
342 343 1.754234 GGTACATGGCTTGGCTGGG 60.754 63.158 5.31 0.00 0.00 4.45
343 344 1.033746 CAGGTACATGGCTTGGCTGG 61.034 60.000 0.00 0.00 0.00 4.85
344 345 1.033746 CCAGGTACATGGCTTGGCTG 61.034 60.000 14.55 0.00 32.48 4.85
345 346 1.304282 CCAGGTACATGGCTTGGCT 59.696 57.895 14.55 0.00 32.48 4.75
346 347 1.000896 ACCAGGTACATGGCTTGGC 60.001 57.895 25.92 0.00 44.80 4.52
347 348 0.620556 AGACCAGGTACATGGCTTGG 59.379 55.000 25.92 15.68 44.80 3.61
348 349 1.679944 CCAGACCAGGTACATGGCTTG 60.680 57.143 25.92 21.76 44.80 4.01
349 350 0.620556 CCAGACCAGGTACATGGCTT 59.379 55.000 25.92 11.79 44.80 4.35
350 351 1.274703 CCCAGACCAGGTACATGGCT 61.275 60.000 25.92 19.73 44.80 4.75
351 352 1.224592 CCCAGACCAGGTACATGGC 59.775 63.158 25.92 17.88 44.80 4.40
352 353 1.915228 CCCCAGACCAGGTACATGG 59.085 63.158 24.52 24.52 46.47 3.66
353 354 1.224592 GCCCCAGACCAGGTACATG 59.775 63.158 0.00 0.00 0.00 3.21
354 355 1.229820 TGCCCCAGACCAGGTACAT 60.230 57.895 0.00 0.00 0.00 2.29
355 356 2.205749 TGCCCCAGACCAGGTACA 59.794 61.111 0.00 0.00 0.00 2.90
356 357 2.221299 TGTGCCCCAGACCAGGTAC 61.221 63.158 0.00 0.00 39.04 3.34
357 358 2.205749 TGTGCCCCAGACCAGGTA 59.794 61.111 0.00 0.00 0.00 3.08
358 359 3.570212 GTGTGCCCCAGACCAGGT 61.570 66.667 0.00 0.00 0.00 4.00
359 360 3.569210 TGTGTGCCCCAGACCAGG 61.569 66.667 0.00 0.00 0.00 4.45
360 361 2.281761 GTGTGTGCCCCAGACCAG 60.282 66.667 0.00 0.00 31.28 4.00
366 367 3.884774 GGACTGGTGTGTGCCCCA 61.885 66.667 0.00 0.00 0.00 4.96
368 369 3.936203 TCGGACTGGTGTGTGCCC 61.936 66.667 0.00 0.00 0.00 5.36
369 370 2.665185 GTCGGACTGGTGTGTGCC 60.665 66.667 0.00 0.00 0.00 5.01
370 371 3.036084 CGTCGGACTGGTGTGTGC 61.036 66.667 6.57 0.00 0.00 4.57
371 372 3.036084 GCGTCGGACTGGTGTGTG 61.036 66.667 6.57 0.00 0.00 3.82
372 373 3.533105 TGCGTCGGACTGGTGTGT 61.533 61.111 6.57 0.00 0.00 3.72
373 374 3.036084 GTGCGTCGGACTGGTGTG 61.036 66.667 9.90 0.00 0.00 3.82
374 375 3.208884 GAGTGCGTCGGACTGGTGT 62.209 63.158 24.84 0.00 0.00 4.16
375 376 2.430921 GAGTGCGTCGGACTGGTG 60.431 66.667 24.84 0.00 0.00 4.17
376 377 2.597805 AGAGTGCGTCGGACTGGT 60.598 61.111 24.84 8.31 0.00 4.00
377 378 2.179517 GAGAGTGCGTCGGACTGG 59.820 66.667 24.84 0.00 0.00 4.00
378 379 1.154131 CTGAGAGTGCGTCGGACTG 60.154 63.158 24.84 5.84 0.00 3.51
379 380 1.302383 CTCTGAGAGTGCGTCGGACT 61.302 60.000 20.04 20.04 0.00 3.85
380 381 1.135731 CTCTGAGAGTGCGTCGGAC 59.864 63.158 9.08 9.08 0.00 4.79
381 382 2.041115 CCTCTGAGAGTGCGTCGGA 61.041 63.158 8.88 0.00 0.00 4.55
382 383 2.487428 CCTCTGAGAGTGCGTCGG 59.513 66.667 8.88 0.00 0.00 4.79
383 384 2.202544 GCCTCTGAGAGTGCGTCG 60.203 66.667 8.88 0.00 0.00 5.12
384 385 2.183046 GGCCTCTGAGAGTGCGTC 59.817 66.667 8.88 0.00 30.49 5.19
385 386 3.753434 CGGCCTCTGAGAGTGCGT 61.753 66.667 8.88 0.00 30.49 5.24
387 388 4.828925 GGCGGCCTCTGAGAGTGC 62.829 72.222 12.87 11.05 0.00 4.40
388 389 4.504916 CGGCGGCCTCTGAGAGTG 62.505 72.222 18.34 1.26 0.00 3.51
402 403 3.573491 GTGTAAGATGGCGGCGGC 61.573 66.667 27.76 27.76 38.90 6.53
403 404 2.895372 GGTGTAAGATGGCGGCGG 60.895 66.667 9.78 0.00 0.00 6.13
404 405 2.971428 ATCGGTGTAAGATGGCGGCG 62.971 60.000 0.51 0.51 0.00 6.46
405 406 1.222115 GATCGGTGTAAGATGGCGGC 61.222 60.000 0.00 0.00 0.00 6.53
406 407 0.104120 TGATCGGTGTAAGATGGCGG 59.896 55.000 0.00 0.00 0.00 6.13
407 408 1.794701 CATGATCGGTGTAAGATGGCG 59.205 52.381 0.00 0.00 0.00 5.69
408 409 2.802816 GTCATGATCGGTGTAAGATGGC 59.197 50.000 0.00 0.00 0.00 4.40
409 410 3.804325 GTGTCATGATCGGTGTAAGATGG 59.196 47.826 0.00 0.00 0.00 3.51
410 411 4.268644 GTGTGTCATGATCGGTGTAAGATG 59.731 45.833 0.00 0.00 0.00 2.90
411 412 4.160439 AGTGTGTCATGATCGGTGTAAGAT 59.840 41.667 0.00 0.00 0.00 2.40
412 413 3.509967 AGTGTGTCATGATCGGTGTAAGA 59.490 43.478 0.00 0.00 0.00 2.10
413 414 3.849911 AGTGTGTCATGATCGGTGTAAG 58.150 45.455 0.00 0.00 0.00 2.34
414 415 3.953712 AGTGTGTCATGATCGGTGTAA 57.046 42.857 0.00 0.00 0.00 2.41
415 416 6.702716 TTATAGTGTGTCATGATCGGTGTA 57.297 37.500 0.00 0.00 0.00 2.90
416 417 5.592104 TTATAGTGTGTCATGATCGGTGT 57.408 39.130 0.00 0.00 0.00 4.16
417 418 6.479990 ACATTTATAGTGTGTCATGATCGGTG 59.520 38.462 0.00 0.00 0.00 4.94
418 419 6.479990 CACATTTATAGTGTGTCATGATCGGT 59.520 38.462 0.00 0.00 41.48 4.69
419 420 6.564686 GCACATTTATAGTGTGTCATGATCGG 60.565 42.308 16.81 0.00 46.59 4.18
420 421 6.201615 AGCACATTTATAGTGTGTCATGATCG 59.798 38.462 16.81 0.00 46.59 3.69
421 422 7.488187 AGCACATTTATAGTGTGTCATGATC 57.512 36.000 16.81 0.00 46.59 2.92
422 423 7.870509 AAGCACATTTATAGTGTGTCATGAT 57.129 32.000 16.81 0.00 46.59 2.45
423 424 7.529158 CAAAGCACATTTATAGTGTGTCATGA 58.471 34.615 16.81 0.00 46.59 3.07
424 425 6.252015 GCAAAGCACATTTATAGTGTGTCATG 59.748 38.462 16.81 14.10 46.59 3.07
425 426 6.072008 TGCAAAGCACATTTATAGTGTGTCAT 60.072 34.615 16.81 5.96 46.59 3.06
426 427 5.240403 TGCAAAGCACATTTATAGTGTGTCA 59.760 36.000 16.81 8.46 46.59 3.58
427 428 5.698832 TGCAAAGCACATTTATAGTGTGTC 58.301 37.500 16.81 11.45 46.59 3.67
428 429 5.703978 TGCAAAGCACATTTATAGTGTGT 57.296 34.783 16.81 2.71 46.59 3.72
430 431 6.980593 TCTTTGCAAAGCACATTTATAGTGT 58.019 32.000 30.35 0.00 38.71 3.55
431 432 8.377681 CAATCTTTGCAAAGCACATTTATAGTG 58.622 33.333 30.35 16.88 38.71 2.74
432 433 8.306038 TCAATCTTTGCAAAGCACATTTATAGT 58.694 29.630 30.35 9.68 38.71 2.12
433 434 8.692110 TCAATCTTTGCAAAGCACATTTATAG 57.308 30.769 30.35 14.57 38.71 1.31
434 435 9.486497 TTTCAATCTTTGCAAAGCACATTTATA 57.514 25.926 30.35 13.17 38.71 0.98
435 436 7.966246 TTCAATCTTTGCAAAGCACATTTAT 57.034 28.000 30.35 16.06 38.71 1.40
436 437 7.783090 TTTCAATCTTTGCAAAGCACATTTA 57.217 28.000 30.35 15.59 38.71 1.40
437 438 6.680874 TTTCAATCTTTGCAAAGCACATTT 57.319 29.167 30.35 16.46 38.71 2.32
438 439 6.680874 TTTTCAATCTTTGCAAAGCACATT 57.319 29.167 30.35 22.15 38.71 2.71
439 440 6.870971 ATTTTCAATCTTTGCAAAGCACAT 57.129 29.167 30.35 18.05 38.71 3.21
440 441 7.783090 TTATTTTCAATCTTTGCAAAGCACA 57.217 28.000 30.35 16.63 38.71 4.57
441 442 9.745323 GTATTATTTTCAATCTTTGCAAAGCAC 57.255 29.630 30.35 10.14 38.71 4.40
442 443 8.934825 GGTATTATTTTCAATCTTTGCAAAGCA 58.065 29.630 30.35 20.41 35.99 3.91
443 444 8.110002 CGGTATTATTTTCAATCTTTGCAAAGC 58.890 33.333 30.35 13.25 35.99 3.51
444 445 9.139174 ACGGTATTATTTTCAATCTTTGCAAAG 57.861 29.630 29.53 29.53 37.36 2.77
445 446 8.920665 CACGGTATTATTTTCAATCTTTGCAAA 58.079 29.630 12.14 12.14 30.82 3.68
446 447 8.300286 TCACGGTATTATTTTCAATCTTTGCAA 58.700 29.630 0.00 0.00 0.00 4.08
447 448 7.753132 GTCACGGTATTATTTTCAATCTTTGCA 59.247 33.333 0.00 0.00 0.00 4.08
448 449 7.753132 TGTCACGGTATTATTTTCAATCTTTGC 59.247 33.333 0.00 0.00 0.00 3.68
449 450 9.277565 CTGTCACGGTATTATTTTCAATCTTTG 57.722 33.333 0.00 0.00 0.00 2.77
450 451 8.458843 CCTGTCACGGTATTATTTTCAATCTTT 58.541 33.333 0.00 0.00 0.00 2.52
451 452 7.827236 TCCTGTCACGGTATTATTTTCAATCTT 59.173 33.333 0.00 0.00 0.00 2.40
452 453 7.335627 TCCTGTCACGGTATTATTTTCAATCT 58.664 34.615 0.00 0.00 0.00 2.40
453 454 7.548196 TCCTGTCACGGTATTATTTTCAATC 57.452 36.000 0.00 0.00 0.00 2.67
454 455 7.610305 AGTTCCTGTCACGGTATTATTTTCAAT 59.390 33.333 0.00 0.00 0.00 2.57
455 456 6.938030 AGTTCCTGTCACGGTATTATTTTCAA 59.062 34.615 0.00 0.00 0.00 2.69
456 457 6.469410 AGTTCCTGTCACGGTATTATTTTCA 58.531 36.000 0.00 0.00 0.00 2.69
457 458 6.980051 AGTTCCTGTCACGGTATTATTTTC 57.020 37.500 0.00 0.00 0.00 2.29
461 462 9.924650 GAATATTAGTTCCTGTCACGGTATTAT 57.075 33.333 0.00 0.00 0.00 1.28
462 463 8.362639 GGAATATTAGTTCCTGTCACGGTATTA 58.637 37.037 0.00 0.00 43.49 0.98
463 464 7.215085 GGAATATTAGTTCCTGTCACGGTATT 58.785 38.462 0.00 0.00 43.49 1.89
464 465 6.516194 CGGAATATTAGTTCCTGTCACGGTAT 60.516 42.308 4.37 0.00 44.43 2.73
465 466 5.221106 CGGAATATTAGTTCCTGTCACGGTA 60.221 44.000 4.37 0.00 44.43 4.02
466 467 4.441079 CGGAATATTAGTTCCTGTCACGGT 60.441 45.833 4.37 0.00 44.43 4.83
467 468 4.049186 CGGAATATTAGTTCCTGTCACGG 58.951 47.826 4.37 0.00 44.43 4.94
468 469 4.928601 TCGGAATATTAGTTCCTGTCACG 58.071 43.478 4.37 0.00 44.43 4.35
469 470 5.903810 ACTCGGAATATTAGTTCCTGTCAC 58.096 41.667 4.37 0.00 44.43 3.67
470 471 6.540438 AACTCGGAATATTAGTTCCTGTCA 57.460 37.500 4.37 0.00 44.43 3.58
471 472 7.039882 TGAAACTCGGAATATTAGTTCCTGTC 58.960 38.462 3.21 0.00 44.43 3.51
472 473 6.942976 TGAAACTCGGAATATTAGTTCCTGT 58.057 36.000 3.21 1.07 44.43 4.00
473 474 7.928706 AGATGAAACTCGGAATATTAGTTCCTG 59.071 37.037 3.21 0.54 44.43 3.86
474 475 8.024145 AGATGAAACTCGGAATATTAGTTCCT 57.976 34.615 3.21 0.00 44.43 3.36
475 476 9.413048 CTAGATGAAACTCGGAATATTAGTTCC 57.587 37.037 3.21 0.00 43.42 3.62
476 477 9.413048 CCTAGATGAAACTCGGAATATTAGTTC 57.587 37.037 3.21 0.00 32.42 3.01
477 478 9.144298 TCCTAGATGAAACTCGGAATATTAGTT 57.856 33.333 0.00 0.00 35.01 2.24
524 526 3.190079 CAACCGTCGTGAATGATGAGAT 58.810 45.455 0.00 0.00 0.00 2.75
540 542 3.499737 GGATCAGCGCACCAACCG 61.500 66.667 11.47 0.00 0.00 4.44
549 551 5.545658 TGCTAAAACTTAAAGGATCAGCG 57.454 39.130 0.00 0.00 0.00 5.18
572 574 1.866015 AGATGGATGGGAACTCGTCA 58.134 50.000 0.00 0.00 0.00 4.35
578 580 4.843728 TGTTGAAGTAGATGGATGGGAAC 58.156 43.478 0.00 0.00 0.00 3.62
587 589 9.569167 TCGTAGTAGAATTTGTTGAAGTAGATG 57.431 33.333 0.00 0.00 0.00 2.90
609 611 0.179156 GGCGGTGAAATCTCGTCGTA 60.179 55.000 0.00 0.00 0.00 3.43
615 617 1.521681 CCGGAGGCGGTGAAATCTC 60.522 63.158 0.00 0.00 46.14 2.75
644 646 3.630148 GGCGCGTCATCGTCATGG 61.630 66.667 5.47 0.00 39.49 3.66
647 650 2.506217 GAAGGCGCGTCATCGTCA 60.506 61.111 15.58 0.00 36.38 4.35
681 684 5.209818 ACGTCCAACTTTCAATGACTAGA 57.790 39.130 0.00 0.00 0.00 2.43
688 691 7.540299 TCTTTTAACAACGTCCAACTTTCAAT 58.460 30.769 0.00 0.00 0.00 2.57
694 697 6.505044 AGTTTCTTTTAACAACGTCCAACT 57.495 33.333 0.00 0.00 0.00 3.16
794 800 1.881973 TCTGATCCAAAAGCACTGTGC 59.118 47.619 24.59 24.59 45.46 4.57
839 850 4.994471 CTGGCAGCCGACACAGCA 62.994 66.667 7.03 0.00 0.00 4.41
908 921 2.757868 CCGATTGAACTTGGGCCATTTA 59.242 45.455 7.26 0.00 0.00 1.40
924 937 3.750371 TCATGTTTTGAGGTGACCGATT 58.250 40.909 0.00 0.00 0.00 3.34
939 952 0.387565 GGCGTTGGTTGGTTCATGTT 59.612 50.000 0.00 0.00 0.00 2.71
1051 1099 1.731613 GTGCCACGACGACGATGAA 60.732 57.895 15.32 0.00 42.66 2.57
1257 1305 2.384382 GATACGCGGCAATTGGATTTG 58.616 47.619 12.47 0.00 0.00 2.32
1474 1977 0.674895 GTCTTGGCGAGCAGGTCATT 60.675 55.000 0.00 0.00 0.00 2.57
1611 2115 0.035534 CCATCCCGGACATGTTCACA 60.036 55.000 0.73 0.00 36.56 3.58
1809 2313 3.626924 GCCCTGGACGTGGACAGT 61.627 66.667 0.00 0.00 32.90 3.55
1863 2367 0.613260 TATCCTTGGCAGCGTTGAGT 59.387 50.000 2.38 0.00 0.00 3.41
1872 2376 1.062121 AGGTAGGCTCTATCCTTGGCA 60.062 52.381 0.00 0.00 37.66 4.92
2089 2593 2.114670 CCGTGCGGAAATCAGGCAT 61.115 57.895 4.35 0.00 39.14 4.40
2157 2661 2.111669 CACAGGCTGGTCTGCACA 59.888 61.111 20.34 0.00 38.26 4.57
2193 2697 2.663188 GTCATCCGCGATGGCTCC 60.663 66.667 8.23 0.00 40.97 4.70
2491 3003 8.200364 TCCCTCCGTAAAGAAATATAAAAACG 57.800 34.615 0.00 0.00 0.00 3.60
2543 3055 6.404844 CGGACTCAGTCATACTCTTGTACATT 60.405 42.308 7.24 0.00 33.68 2.71
2561 3074 3.576861 AGGATATGATTGGTCGGACTCA 58.423 45.455 8.23 4.61 0.00 3.41
2644 3157 5.702349 AAGGAGCTCAAATCTTTTGTCAG 57.298 39.130 17.19 0.00 0.00 3.51
2770 3283 8.202461 TCTGGACGGAGGTATATAATCATTTT 57.798 34.615 0.00 0.00 0.00 1.82
2771 3284 7.792364 TCTGGACGGAGGTATATAATCATTT 57.208 36.000 0.00 0.00 0.00 2.32
2772 3285 7.792364 TTCTGGACGGAGGTATATAATCATT 57.208 36.000 0.00 0.00 0.00 2.57
2773 3286 7.792364 TTTCTGGACGGAGGTATATAATCAT 57.208 36.000 0.00 0.00 0.00 2.45
2774 3287 7.792364 ATTTCTGGACGGAGGTATATAATCA 57.208 36.000 0.00 0.00 0.00 2.57
2775 3288 9.804758 CTTATTTCTGGACGGAGGTATATAATC 57.195 37.037 0.00 0.00 0.00 1.75
2777 3290 8.582437 CACTTATTTCTGGACGGAGGTATATAA 58.418 37.037 0.00 0.00 0.00 0.98
2778 3291 7.946219 TCACTTATTTCTGGACGGAGGTATATA 59.054 37.037 0.00 0.00 0.00 0.86
2779 3292 6.781014 TCACTTATTTCTGGACGGAGGTATAT 59.219 38.462 0.00 0.00 0.00 0.86
2782 3295 4.159135 GTCACTTATTTCTGGACGGAGGTA 59.841 45.833 0.00 0.00 0.00 3.08
2783 3296 3.056035 GTCACTTATTTCTGGACGGAGGT 60.056 47.826 0.00 0.00 0.00 3.85
2784 3297 3.056107 TGTCACTTATTTCTGGACGGAGG 60.056 47.826 0.00 0.00 0.00 4.30
2786 3299 4.312443 GTTGTCACTTATTTCTGGACGGA 58.688 43.478 0.00 0.00 0.00 4.69
2787 3300 3.122948 CGTTGTCACTTATTTCTGGACGG 59.877 47.826 0.00 0.00 0.00 4.79
2789 3302 5.668558 AACGTTGTCACTTATTTCTGGAC 57.331 39.130 0.00 0.00 0.00 4.02
2790 3303 6.687081 AAAACGTTGTCACTTATTTCTGGA 57.313 33.333 0.00 0.00 0.00 3.86
3269 3782 0.179006 GGGCTTAGATGGGGCAGAAG 60.179 60.000 0.00 0.00 0.00 2.85
3296 3809 8.035394 CAGTAAATCTAGGTGCTCAAAGTAAGA 58.965 37.037 0.00 0.00 0.00 2.10
3309 3822 7.482169 TGTGTTCATCTCAGTAAATCTAGGT 57.518 36.000 0.00 0.00 0.00 3.08
3355 3868 5.609533 TCCTCTTACATACTTTACAGGGC 57.390 43.478 0.00 0.00 0.00 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.