Multiple sequence alignment - TraesCS1A01G040700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G040700 chr1A 100.000 5351 0 0 1 5351 22333422 22328072 0.000000e+00 9882.0
1 TraesCS1A01G040700 chr1D 96.364 4510 117 17 190 4692 20703964 20699495 0.000000e+00 7376.0
2 TraesCS1A01G040700 chr1D 92.735 468 30 4 4691 5155 20698866 20698400 0.000000e+00 673.0
3 TraesCS1A01G040700 chr1D 90.351 114 5 4 3 116 20704123 20704016 1.550000e-30 145.0
4 TraesCS1A01G040700 chr1D 97.500 40 1 0 112 151 20704000 20703961 9.620000e-08 69.4
5 TraesCS1A01G040700 chr6A 85.685 3402 422 35 970 4337 4711991 4708621 0.000000e+00 3524.0
6 TraesCS1A01G040700 chr6A 93.333 75 5 0 5169 5243 5112969 5112895 1.580000e-20 111.0
7 TraesCS1A01G040700 chr2A 88.456 2616 269 13 1779 4379 72941497 72938900 0.000000e+00 3127.0
8 TraesCS1A01G040700 chr2A 83.673 784 117 7 990 1763 72942346 72941564 0.000000e+00 728.0
9 TraesCS1A01G040700 chr1B 94.772 1817 71 12 3331 5140 34137188 34135389 0.000000e+00 2808.0
10 TraesCS1A01G040700 chr1B 95.858 169 7 0 3390 3558 38165206 38165038 1.900000e-69 274.0
11 TraesCS1A01G040700 chr1B 79.021 143 26 4 1001 1141 14816170 14816310 1.590000e-15 95.3
12 TraesCS1A01G040700 chrUn 86.107 2476 282 31 1895 4324 274770056 274772515 0.000000e+00 2610.0
13 TraesCS1A01G040700 chr3A 86.107 2476 282 31 1895 4324 731762687 731765146 0.000000e+00 2610.0
14 TraesCS1A01G040700 chr3A 71.489 705 159 37 2851 3534 681663833 681664516 3.340000e-32 150.0
15 TraesCS1A01G040700 chr3B 71.124 703 160 39 2851 3532 721047041 721047721 3.360000e-27 134.0
16 TraesCS1A01G040700 chr5B 91.489 47 3 1 538 584 35574870 35574915 4.470000e-06 63.9
17 TraesCS1A01G040700 chr4A 100.000 32 0 0 836 867 470138817 470138848 5.790000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G040700 chr1A 22328072 22333422 5350 True 9882.00 9882 100.0000 1 5351 1 chr1A.!!$R1 5350
1 TraesCS1A01G040700 chr1D 20698400 20704123 5723 True 2065.85 7376 94.2375 3 5155 4 chr1D.!!$R1 5152
2 TraesCS1A01G040700 chr6A 4708621 4711991 3370 True 3524.00 3524 85.6850 970 4337 1 chr6A.!!$R1 3367
3 TraesCS1A01G040700 chr2A 72938900 72942346 3446 True 1927.50 3127 86.0645 990 4379 2 chr2A.!!$R1 3389
4 TraesCS1A01G040700 chr1B 34135389 34137188 1799 True 2808.00 2808 94.7720 3331 5140 1 chr1B.!!$R1 1809
5 TraesCS1A01G040700 chrUn 274770056 274772515 2459 False 2610.00 2610 86.1070 1895 4324 1 chrUn.!!$F1 2429
6 TraesCS1A01G040700 chr3A 731762687 731765146 2459 False 2610.00 2610 86.1070 1895 4324 1 chr3A.!!$F2 2429

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
949 970 0.177836 TGCTAAGATAAGCCAGCGCA 59.822 50.000 11.47 0.0 42.05 6.09 F
1961 2042 0.614812 TACCCGGTTGAACCCTTAGC 59.385 55.000 9.08 0.0 33.75 3.09 F
2295 2386 0.109153 TGCTGCCAGTGTCACTTCAT 59.891 50.000 1.67 0.0 0.00 2.57 F
2503 2600 3.266772 TGGCTACAAATGGGATGAGACTT 59.733 43.478 0.00 0.0 0.00 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2083 2170 0.246635 CAGGAACTCGATTCACCCGT 59.753 55.000 8.98 0.0 39.30 5.28 R
2799 2908 0.250467 ACACGAGGCTGTTGCTCAAT 60.250 50.000 0.00 0.0 39.59 2.57 R
3134 3249 1.177401 GTGTTCTTTCCTGGCCATCC 58.823 55.000 5.51 0.0 0.00 3.51 R
4494 4639 3.182572 GGCTGTATAGAAATGAACTCGCG 59.817 47.826 0.00 0.0 0.00 5.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.733556 ATAAATAAATAATCGGCTGTATGACCA 57.266 29.630 0.00 0.00 0.00 4.02
27 28 8.635765 AAATAAATAATCGGCTGTATGACCAT 57.364 30.769 0.00 0.00 0.00 3.55
33 34 2.036346 TCGGCTGTATGACCATCATCTG 59.964 50.000 0.00 0.00 38.26 2.90
38 39 4.281941 GCTGTATGACCATCATCTGTCCTA 59.718 45.833 0.00 0.00 38.26 2.94
74 75 5.755409 AGTGTAGTTAATGTGATGGACCA 57.245 39.130 0.00 0.00 0.00 4.02
89 90 2.161855 GGACCAGAACATTGATGCACA 58.838 47.619 0.00 0.00 0.00 4.57
90 91 2.163010 GGACCAGAACATTGATGCACAG 59.837 50.000 0.00 0.00 0.00 3.66
147 168 1.341156 GGCTGAGGGTGGAGCATAGT 61.341 60.000 0.00 0.00 36.90 2.12
151 172 1.007118 TGAGGGTGGAGCATAGTCTGA 59.993 52.381 0.00 0.00 0.00 3.27
152 173 1.686052 GAGGGTGGAGCATAGTCTGAG 59.314 57.143 0.00 0.00 0.00 3.35
153 174 1.007721 AGGGTGGAGCATAGTCTGAGT 59.992 52.381 0.00 0.00 0.00 3.41
155 176 2.383855 GGTGGAGCATAGTCTGAGTCT 58.616 52.381 0.00 0.00 0.00 3.24
156 177 2.100584 GGTGGAGCATAGTCTGAGTCTG 59.899 54.545 0.00 0.00 0.00 3.51
158 179 2.757314 TGGAGCATAGTCTGAGTCTGTG 59.243 50.000 0.00 0.00 0.00 3.66
159 180 3.020274 GGAGCATAGTCTGAGTCTGTGA 58.980 50.000 7.54 0.00 0.00 3.58
161 182 4.081972 GGAGCATAGTCTGAGTCTGTGAAA 60.082 45.833 7.54 0.00 0.00 2.69
162 183 5.473931 GAGCATAGTCTGAGTCTGTGAAAA 58.526 41.667 7.54 0.00 0.00 2.29
163 184 5.233988 AGCATAGTCTGAGTCTGTGAAAAC 58.766 41.667 7.54 0.00 0.00 2.43
164 185 5.011533 AGCATAGTCTGAGTCTGTGAAAACT 59.988 40.000 7.54 0.00 0.00 2.66
165 186 5.698545 GCATAGTCTGAGTCTGTGAAAACTT 59.301 40.000 7.54 0.00 0.00 2.66
166 187 6.868864 GCATAGTCTGAGTCTGTGAAAACTTA 59.131 38.462 7.54 0.00 0.00 2.24
167 188 7.385205 GCATAGTCTGAGTCTGTGAAAACTTAA 59.615 37.037 7.54 0.00 0.00 1.85
168 189 8.920665 CATAGTCTGAGTCTGTGAAAACTTAAG 58.079 37.037 0.00 0.00 0.00 1.85
169 190 6.284459 AGTCTGAGTCTGTGAAAACTTAAGG 58.716 40.000 7.53 0.00 0.00 2.69
170 191 5.050023 GTCTGAGTCTGTGAAAACTTAAGGC 60.050 44.000 7.53 0.00 0.00 4.35
171 192 5.036117 TGAGTCTGTGAAAACTTAAGGCT 57.964 39.130 7.53 0.00 0.00 4.58
172 193 5.057149 TGAGTCTGTGAAAACTTAAGGCTC 58.943 41.667 7.53 0.88 39.51 4.70
173 194 5.036117 AGTCTGTGAAAACTTAAGGCTCA 57.964 39.130 7.53 3.56 0.00 4.26
174 195 4.816925 AGTCTGTGAAAACTTAAGGCTCAC 59.183 41.667 19.25 19.25 37.50 3.51
175 196 4.816925 GTCTGTGAAAACTTAAGGCTCACT 59.183 41.667 23.23 0.00 37.79 3.41
176 197 4.816385 TCTGTGAAAACTTAAGGCTCACTG 59.184 41.667 23.23 22.39 37.79 3.66
177 198 4.776349 TGTGAAAACTTAAGGCTCACTGA 58.224 39.130 23.23 10.37 37.79 3.41
178 199 4.816385 TGTGAAAACTTAAGGCTCACTGAG 59.184 41.667 23.23 1.21 37.79 3.35
193 214 5.314923 TCACTGAGCATTAAATTTCCTGC 57.685 39.130 14.09 14.09 34.85 4.85
194 215 4.766373 TCACTGAGCATTAAATTTCCTGCA 59.234 37.500 20.65 6.33 37.09 4.41
195 216 5.100259 CACTGAGCATTAAATTTCCTGCAG 58.900 41.667 20.65 6.78 37.09 4.41
196 217 4.110482 CTGAGCATTAAATTTCCTGCAGC 58.890 43.478 20.65 14.56 37.09 5.25
197 218 3.111098 GAGCATTAAATTTCCTGCAGCG 58.889 45.455 20.65 1.56 37.09 5.18
198 219 1.589779 GCATTAAATTTCCTGCAGCGC 59.410 47.619 8.66 0.00 34.77 5.92
199 220 2.736400 GCATTAAATTTCCTGCAGCGCT 60.736 45.455 2.64 2.64 34.77 5.92
216 237 0.321122 GCTTGACTCCTCACTGGTGG 60.321 60.000 0.70 0.00 37.07 4.61
217 238 1.342074 CTTGACTCCTCACTGGTGGA 58.658 55.000 0.70 0.00 37.07 4.02
245 266 6.775708 AGTAACTACATTTTCCTTGCACCTA 58.224 36.000 0.00 0.00 0.00 3.08
246 267 7.228590 AGTAACTACATTTTCCTTGCACCTAA 58.771 34.615 0.00 0.00 0.00 2.69
247 268 7.888546 AGTAACTACATTTTCCTTGCACCTAAT 59.111 33.333 0.00 0.00 0.00 1.73
248 269 7.539034 AACTACATTTTCCTTGCACCTAATT 57.461 32.000 0.00 0.00 0.00 1.40
249 270 7.158099 ACTACATTTTCCTTGCACCTAATTC 57.842 36.000 0.00 0.00 0.00 2.17
250 271 6.948309 ACTACATTTTCCTTGCACCTAATTCT 59.052 34.615 0.00 0.00 0.00 2.40
275 296 2.433970 GCCTCTCCTGCATACTTCTTCT 59.566 50.000 0.00 0.00 0.00 2.85
276 297 3.118445 GCCTCTCCTGCATACTTCTTCTT 60.118 47.826 0.00 0.00 0.00 2.52
277 298 4.692228 CCTCTCCTGCATACTTCTTCTTC 58.308 47.826 0.00 0.00 0.00 2.87
278 299 4.405358 CCTCTCCTGCATACTTCTTCTTCT 59.595 45.833 0.00 0.00 0.00 2.85
300 321 4.457834 TGCTGTTCTTCCTTAGCTAGTC 57.542 45.455 0.00 0.00 37.10 2.59
334 355 1.474077 GGTGTTGGTGGATCATTCTGC 59.526 52.381 0.00 0.00 0.00 4.26
365 386 7.400627 TCATTTCCCGGGTAATTTCCTTAATTT 59.599 33.333 21.74 0.00 37.60 1.82
369 390 8.065473 TCCCGGGTAATTTCCTTAATTTTTAC 57.935 34.615 22.86 0.00 37.60 2.01
371 392 8.479689 CCCGGGTAATTTCCTTAATTTTTACAT 58.520 33.333 14.18 0.00 37.60 2.29
388 409 6.874278 TTTACATCCATCTTCTTCTCCAGA 57.126 37.500 0.00 0.00 0.00 3.86
390 411 5.549742 ACATCCATCTTCTTCTCCAGATC 57.450 43.478 0.00 0.00 0.00 2.75
431 452 1.616865 TGCTACTCTTAACTGCACCGT 59.383 47.619 0.00 0.00 0.00 4.83
468 489 6.294955 GGAAGAGGCAAATCAGAAACAAGAAT 60.295 38.462 0.00 0.00 0.00 2.40
495 516 4.390556 AGGCCGGCCTGAGAGACT 62.391 66.667 46.71 21.50 46.22 3.24
500 521 1.383456 CCGGCCTGAGAGACTGAGAG 61.383 65.000 0.00 0.00 0.00 3.20
502 523 1.846007 GGCCTGAGAGACTGAGAGAA 58.154 55.000 0.00 0.00 0.00 2.87
511 532 4.848357 AGAGACTGAGAGAAAGAGAGAGG 58.152 47.826 0.00 0.00 0.00 3.69
535 556 3.451894 GTTGGGCTTGGGCATCCG 61.452 66.667 0.00 0.00 40.87 4.18
536 557 4.757355 TTGGGCTTGGGCATCCGG 62.757 66.667 0.00 0.00 40.87 5.14
556 577 3.898509 CTCCCCGAGCTGAGCGAG 61.899 72.222 0.00 0.00 0.00 5.03
569 590 2.511145 GCGAGCTGCTCCTCAAGG 60.511 66.667 22.97 9.56 41.73 3.61
570 591 3.011635 GCGAGCTGCTCCTCAAGGA 62.012 63.158 22.97 0.00 43.08 3.36
639 660 1.896660 GACCTCAAGGCCACGCAAA 60.897 57.895 5.01 0.00 39.32 3.68
686 707 2.119457 GCATTAATTTGCTGTAGCGCC 58.881 47.619 2.29 0.00 45.83 6.53
769 790 6.735678 TGATGCAACGTAATGAAGTATTGT 57.264 33.333 0.00 0.00 0.00 2.71
772 793 6.735678 TGCAACGTAATGAAGTATTGTGAT 57.264 33.333 0.00 0.00 0.00 3.06
801 822 1.759445 ACTGCAGCTGGAGTGGTATAG 59.241 52.381 36.36 12.40 45.18 1.31
876 897 9.994432 CAAGAATCCTATTAATTTGTGTCTCAC 57.006 33.333 0.00 0.00 34.56 3.51
890 911 0.837691 TCTCACCCACTGCATCCTGT 60.838 55.000 0.00 0.00 0.00 4.00
915 936 5.045359 CAGGTATGGTATCCATGATCCACAT 60.045 44.000 11.04 0.00 44.84 3.21
925 946 0.876399 TGATCCACATATGCGCATGC 59.124 50.000 32.48 7.91 43.20 4.06
949 970 0.177836 TGCTAAGATAAGCCAGCGCA 59.822 50.000 11.47 0.00 42.05 6.09
961 982 1.559814 CAGCGCATAATCACGGTCG 59.440 57.895 11.47 0.00 38.04 4.79
987 1008 3.390003 GGAGACTCTCCGATCGAGT 57.610 57.895 18.66 12.47 41.08 4.18
988 1009 1.670791 GGAGACTCTCCGATCGAGTT 58.329 55.000 18.66 3.57 41.08 3.01
998 1019 1.202582 CCGATCGAGTTGAGTTCCAGT 59.797 52.381 18.66 0.00 0.00 4.00
1050 1071 2.117156 GCTGCTTGGCGTCATCCAT 61.117 57.895 0.00 0.00 35.77 3.41
1068 1089 4.529897 TCCATGACGAGGCTAAGTTACTA 58.470 43.478 0.00 0.00 0.00 1.82
1449 1470 3.606886 GAAGCTGGACTTCGACCAA 57.393 52.632 0.00 0.00 45.16 3.67
1623 1653 3.561725 ACAAGTGCACTGAAAAGCTAGTC 59.438 43.478 22.49 0.00 0.00 2.59
1625 1655 1.461127 GTGCACTGAAAAGCTAGTCCG 59.539 52.381 10.32 0.00 0.00 4.79
1765 1795 6.402658 GGAAAAATTCGACCACATCTTCTCTC 60.403 42.308 0.00 0.00 0.00 3.20
1774 1804 6.429692 CGACCACATCTTCTCTCTATATGACT 59.570 42.308 0.00 0.00 0.00 3.41
1786 1867 4.546674 TCTATATGACTGGTCTTGCCTGA 58.453 43.478 2.38 0.00 39.25 3.86
1808 1889 4.469469 AAGAACCCTGGGATTTTCTTGA 57.531 40.909 22.27 0.00 37.02 3.02
1848 1929 5.958955 CTTGAAGAGGAATCCAACAAATCC 58.041 41.667 0.61 0.00 0.00 3.01
1851 1932 3.610911 AGAGGAATCCAACAAATCCGTC 58.389 45.455 0.61 0.00 37.05 4.79
1961 2042 0.614812 TACCCGGTTGAACCCTTAGC 59.385 55.000 9.08 0.00 33.75 3.09
2142 2232 3.169908 TCGCCAATACATAGCCATCCTA 58.830 45.455 0.00 0.00 0.00 2.94
2143 2233 3.774766 TCGCCAATACATAGCCATCCTAT 59.225 43.478 0.00 0.00 37.22 2.57
2174 2264 2.120282 CCAAGCAGCACACCACACA 61.120 57.895 0.00 0.00 0.00 3.72
2265 2356 4.840271 TGAAGATTCATGTGCAGATCACT 58.160 39.130 0.00 0.00 38.18 3.41
2295 2386 0.109153 TGCTGCCAGTGTCACTTCAT 59.891 50.000 1.67 0.00 0.00 2.57
2503 2600 3.266772 TGGCTACAAATGGGATGAGACTT 59.733 43.478 0.00 0.00 0.00 3.01
2640 2737 3.776340 TGAATACTATCGCGAAACAGCA 58.224 40.909 15.24 1.60 36.85 4.41
2799 2908 3.495100 GGAGCAGAGAAGAACTGGACAAA 60.495 47.826 0.00 0.00 36.09 2.83
3134 3249 5.635280 CACTAGTGTACAACTTCATCACCAG 59.365 44.000 15.06 0.00 40.56 4.00
3313 3428 1.909302 TCCTGGATCTGGAAGGTTGTC 59.091 52.381 0.00 0.00 32.59 3.18
3882 4021 3.801114 AAAAACACACCCAAGCTTCTC 57.199 42.857 0.00 0.00 0.00 2.87
3887 4026 2.154462 CACACCCAAGCTTCTCGAAAT 58.846 47.619 0.00 0.00 0.00 2.17
4071 4210 5.414454 GCATGTTAATTTACACACTGAGGGA 59.586 40.000 0.00 0.00 0.00 4.20
4152 4291 1.812571 GGCATCACCGACATCAACTTT 59.187 47.619 0.00 0.00 0.00 2.66
4326 4465 5.126061 AGCACATCCAAACTTCATTGATACC 59.874 40.000 0.00 0.00 31.84 2.73
4430 4571 4.097437 TGCTTCATCCATTCATTCAAGCTC 59.903 41.667 0.00 0.00 36.54 4.09
4476 4621 8.428536 GTGTGAACTTGATTATGCTCGTATATC 58.571 37.037 0.00 0.00 0.00 1.63
4487 4632 9.758651 ATTATGCTCGTATATCTGTTTGTGTTA 57.241 29.630 0.00 0.00 0.00 2.41
4643 4788 7.209475 CCACATCTTTGGTGTCTATTTTTGTT 58.791 34.615 0.00 0.00 34.46 2.83
4794 5569 1.319541 ATACCTGTCAGACGGATCCG 58.680 55.000 32.20 32.20 46.03 4.18
4816 5591 9.877178 ATCCGTCATATAAGATTGAATTCTACC 57.123 33.333 7.05 0.00 0.00 3.18
4824 5599 5.171339 AGATTGAATTCTACCAGCAGTGT 57.829 39.130 7.05 0.00 0.00 3.55
4835 5610 0.320683 CAGCAGTGTCGGTTCATCCA 60.321 55.000 0.00 0.00 35.57 3.41
4836 5611 0.036952 AGCAGTGTCGGTTCATCCAG 60.037 55.000 0.00 0.00 35.57 3.86
4838 5613 0.036952 CAGTGTCGGTTCATCCAGCT 60.037 55.000 0.00 0.00 35.57 4.24
4915 5690 6.291377 ACTGCAGTTCTTCTCTTATCAACAA 58.709 36.000 15.25 0.00 0.00 2.83
4932 5707 4.455533 TCAACAAAGTTCATCATTCCCTCG 59.544 41.667 0.00 0.00 0.00 4.63
4934 5709 4.003648 ACAAAGTTCATCATTCCCTCGAC 58.996 43.478 0.00 0.00 0.00 4.20
4945 5722 2.490217 CCTCGACCCAGTACAGCG 59.510 66.667 0.00 0.00 0.00 5.18
4963 5740 3.423206 CAGCGTTTCAGCATTCTCAAAAC 59.577 43.478 0.00 0.00 40.15 2.43
4974 5751 4.380974 GCATTCTCAAAACGCTTCTTTCAG 59.619 41.667 0.00 0.00 0.00 3.02
5044 5821 9.838949 GGTTAACCATAATTGCCCAAAGCAGTT 62.839 40.741 20.12 1.10 44.32 3.16
5130 5908 1.392510 GGTAACAAACTGATCGACGGC 59.607 52.381 0.00 0.00 0.00 5.68
5155 5933 0.802494 GATCGGTTGCAACAACGGAT 59.198 50.000 29.55 24.59 41.09 4.18
5156 5934 0.521291 ATCGGTTGCAACAACGGATG 59.479 50.000 29.55 10.64 38.32 3.51
5157 5935 0.533085 TCGGTTGCAACAACGGATGA 60.533 50.000 29.55 12.59 0.00 2.92
5158 5936 0.309302 CGGTTGCAACAACGGATGAA 59.691 50.000 29.55 0.00 0.00 2.57
5159 5937 1.268794 CGGTTGCAACAACGGATGAAA 60.269 47.619 29.55 0.00 0.00 2.69
5160 5938 2.606795 CGGTTGCAACAACGGATGAAAT 60.607 45.455 29.55 0.00 0.00 2.17
5161 5939 2.730928 GGTTGCAACAACGGATGAAATG 59.269 45.455 29.55 0.00 0.00 2.32
5162 5940 3.551863 GGTTGCAACAACGGATGAAATGA 60.552 43.478 29.55 0.00 0.00 2.57
5163 5941 3.998099 TGCAACAACGGATGAAATGAA 57.002 38.095 0.00 0.00 0.00 2.57
5164 5942 3.637432 TGCAACAACGGATGAAATGAAC 58.363 40.909 0.00 0.00 0.00 3.18
5165 5943 3.067320 TGCAACAACGGATGAAATGAACA 59.933 39.130 0.00 0.00 0.00 3.18
5166 5944 4.047822 GCAACAACGGATGAAATGAACAA 58.952 39.130 0.00 0.00 0.00 2.83
5167 5945 4.085107 GCAACAACGGATGAAATGAACAAC 60.085 41.667 0.00 0.00 0.00 3.32
5168 5946 4.237349 ACAACGGATGAAATGAACAACC 57.763 40.909 0.00 0.00 0.00 3.77
5169 5947 3.634448 ACAACGGATGAAATGAACAACCA 59.366 39.130 0.00 0.00 31.88 3.67
5170 5948 4.229096 CAACGGATGAAATGAACAACCAG 58.771 43.478 0.00 0.00 31.88 4.00
5171 5949 2.228822 ACGGATGAAATGAACAACCAGC 59.771 45.455 0.00 0.00 31.88 4.85
5172 5950 2.415893 CGGATGAAATGAACAACCAGCC 60.416 50.000 0.00 0.00 31.88 4.85
5173 5951 2.562298 GGATGAAATGAACAACCAGCCA 59.438 45.455 0.00 0.00 33.84 4.75
5174 5952 3.367703 GGATGAAATGAACAACCAGCCAG 60.368 47.826 0.00 0.00 33.84 4.85
5175 5953 1.962807 TGAAATGAACAACCAGCCAGG 59.037 47.619 0.00 0.00 45.67 4.45
5176 5954 0.681175 AAATGAACAACCAGCCAGGC 59.319 50.000 1.84 1.84 43.14 4.85
5177 5955 1.187567 AATGAACAACCAGCCAGGCC 61.188 55.000 8.22 0.00 43.14 5.19
5178 5956 2.991540 GAACAACCAGCCAGGCCC 60.992 66.667 8.22 0.00 43.14 5.80
5179 5957 3.808218 GAACAACCAGCCAGGCCCA 62.808 63.158 8.22 0.00 43.14 5.36
5180 5958 3.815407 AACAACCAGCCAGGCCCAG 62.815 63.158 8.22 0.00 43.14 4.45
5192 5970 3.657350 GCCCAGGCTGGTACCCAA 61.657 66.667 30.68 0.00 35.17 4.12
5193 5971 3.176297 CCCAGGCTGGTACCCAAA 58.824 61.111 30.68 0.00 35.17 3.28
5194 5972 1.304134 CCCAGGCTGGTACCCAAAC 60.304 63.158 30.68 0.00 35.17 2.93
5195 5973 1.304134 CCAGGCTGGTACCCAAACC 60.304 63.158 25.74 5.46 40.19 3.27
5196 5974 1.767692 CAGGCTGGTACCCAAACCT 59.232 57.895 10.07 7.85 39.75 3.50
5197 5975 0.112412 CAGGCTGGTACCCAAACCTT 59.888 55.000 10.07 0.00 37.86 3.50
5198 5976 1.353022 CAGGCTGGTACCCAAACCTTA 59.647 52.381 10.07 0.00 37.86 2.69
5199 5977 1.353358 AGGCTGGTACCCAAACCTTAC 59.647 52.381 10.07 0.00 36.97 2.34
5200 5978 1.353358 GGCTGGTACCCAAACCTTACT 59.647 52.381 10.07 0.00 40.44 2.24
5201 5979 2.433436 GCTGGTACCCAAACCTTACTG 58.567 52.381 10.07 0.00 40.44 2.74
5202 5980 2.039348 GCTGGTACCCAAACCTTACTGA 59.961 50.000 10.07 0.00 40.44 3.41
5203 5981 3.497227 GCTGGTACCCAAACCTTACTGAA 60.497 47.826 10.07 0.00 40.44 3.02
5204 5982 4.070009 CTGGTACCCAAACCTTACTGAAC 58.930 47.826 10.07 0.00 40.44 3.18
5205 5983 3.181441 TGGTACCCAAACCTTACTGAACC 60.181 47.826 10.07 0.00 40.44 3.62
5206 5984 3.181441 GGTACCCAAACCTTACTGAACCA 60.181 47.826 0.00 0.00 36.53 3.67
5207 5985 2.940158 ACCCAAACCTTACTGAACCAC 58.060 47.619 0.00 0.00 0.00 4.16
5208 5986 2.235891 CCCAAACCTTACTGAACCACC 58.764 52.381 0.00 0.00 0.00 4.61
5209 5987 2.423660 CCCAAACCTTACTGAACCACCA 60.424 50.000 0.00 0.00 0.00 4.17
5210 5988 2.621526 CCAAACCTTACTGAACCACCAC 59.378 50.000 0.00 0.00 0.00 4.16
5211 5989 3.283751 CAAACCTTACTGAACCACCACA 58.716 45.455 0.00 0.00 0.00 4.17
5212 5990 2.632987 ACCTTACTGAACCACCACAC 57.367 50.000 0.00 0.00 0.00 3.82
5213 5991 1.142262 ACCTTACTGAACCACCACACC 59.858 52.381 0.00 0.00 0.00 4.16
5214 5992 1.420138 CCTTACTGAACCACCACACCT 59.580 52.381 0.00 0.00 0.00 4.00
5215 5993 2.635915 CCTTACTGAACCACCACACCTA 59.364 50.000 0.00 0.00 0.00 3.08
5216 5994 3.263425 CCTTACTGAACCACCACACCTAT 59.737 47.826 0.00 0.00 0.00 2.57
5217 5995 4.468510 CCTTACTGAACCACCACACCTATA 59.531 45.833 0.00 0.00 0.00 1.31
5218 5996 5.130477 CCTTACTGAACCACCACACCTATAT 59.870 44.000 0.00 0.00 0.00 0.86
5219 5997 6.352737 CCTTACTGAACCACCACACCTATATT 60.353 42.308 0.00 0.00 0.00 1.28
5220 5998 5.514500 ACTGAACCACCACACCTATATTT 57.486 39.130 0.00 0.00 0.00 1.40
5221 5999 5.253330 ACTGAACCACCACACCTATATTTG 58.747 41.667 0.00 0.00 0.00 2.32
5222 6000 5.013704 ACTGAACCACCACACCTATATTTGA 59.986 40.000 0.00 0.00 0.00 2.69
5223 6001 5.882040 TGAACCACCACACCTATATTTGAA 58.118 37.500 0.00 0.00 0.00 2.69
5224 6002 5.943416 TGAACCACCACACCTATATTTGAAG 59.057 40.000 0.00 0.00 0.00 3.02
5225 6003 4.855340 ACCACCACACCTATATTTGAAGG 58.145 43.478 0.00 0.00 38.93 3.46
5226 6004 3.632145 CCACCACACCTATATTTGAAGGC 59.368 47.826 0.00 0.00 36.24 4.35
5227 6005 4.269183 CACCACACCTATATTTGAAGGCA 58.731 43.478 0.00 0.00 36.24 4.75
5228 6006 4.336433 CACCACACCTATATTTGAAGGCAG 59.664 45.833 0.00 0.00 36.24 4.85
5229 6007 4.227300 ACCACACCTATATTTGAAGGCAGA 59.773 41.667 0.00 0.00 36.24 4.26
5230 6008 4.818546 CCACACCTATATTTGAAGGCAGAG 59.181 45.833 0.00 0.00 36.24 3.35
5231 6009 5.431765 CACACCTATATTTGAAGGCAGAGT 58.568 41.667 0.00 0.00 36.24 3.24
5232 6010 5.295292 CACACCTATATTTGAAGGCAGAGTG 59.705 44.000 0.00 0.00 36.24 3.51
5233 6011 4.818546 CACCTATATTTGAAGGCAGAGTGG 59.181 45.833 0.00 0.00 36.24 4.00
5234 6012 3.817647 CCTATATTTGAAGGCAGAGTGGC 59.182 47.826 0.00 0.00 44.10 5.01
5241 6019 4.371975 GGCAGAGTGGCGTGTAAA 57.628 55.556 0.00 0.00 31.79 2.01
5242 6020 2.854522 GGCAGAGTGGCGTGTAAAT 58.145 52.632 0.00 0.00 31.79 1.40
5243 6021 1.165270 GGCAGAGTGGCGTGTAAATT 58.835 50.000 0.00 0.00 31.79 1.82
5244 6022 2.352388 GGCAGAGTGGCGTGTAAATTA 58.648 47.619 0.00 0.00 31.79 1.40
5245 6023 2.943033 GGCAGAGTGGCGTGTAAATTAT 59.057 45.455 0.00 0.00 31.79 1.28
5246 6024 3.377172 GGCAGAGTGGCGTGTAAATTATT 59.623 43.478 0.00 0.00 31.79 1.40
5247 6025 4.342772 GCAGAGTGGCGTGTAAATTATTG 58.657 43.478 0.00 0.00 0.00 1.90
5248 6026 4.342772 CAGAGTGGCGTGTAAATTATTGC 58.657 43.478 0.00 0.00 0.00 3.56
5249 6027 4.006989 AGAGTGGCGTGTAAATTATTGCA 58.993 39.130 0.00 0.00 0.00 4.08
5250 6028 4.640201 AGAGTGGCGTGTAAATTATTGCAT 59.360 37.500 0.00 0.00 33.60 3.96
5251 6029 5.125417 AGAGTGGCGTGTAAATTATTGCATT 59.875 36.000 0.00 0.00 33.60 3.56
5252 6030 6.317642 AGAGTGGCGTGTAAATTATTGCATTA 59.682 34.615 0.00 0.00 33.60 1.90
5253 6031 6.262601 AGTGGCGTGTAAATTATTGCATTAC 58.737 36.000 0.00 0.00 33.60 1.89
5254 6032 6.030849 GTGGCGTGTAAATTATTGCATTACA 58.969 36.000 5.87 5.87 37.24 2.41
5255 6033 6.196353 GTGGCGTGTAAATTATTGCATTACAG 59.804 38.462 9.52 6.29 39.46 2.74
5256 6034 5.685511 GGCGTGTAAATTATTGCATTACAGG 59.314 40.000 18.64 18.64 43.20 4.00
5257 6035 6.459024 GGCGTGTAAATTATTGCATTACAGGA 60.459 38.462 23.73 0.00 43.09 3.86
5258 6036 6.632834 GCGTGTAAATTATTGCATTACAGGAG 59.367 38.462 23.73 13.95 43.09 3.69
5259 6037 6.632834 CGTGTAAATTATTGCATTACAGGAGC 59.367 38.462 18.34 5.27 43.09 4.70
5260 6038 7.467267 CGTGTAAATTATTGCATTACAGGAGCT 60.467 37.037 18.34 0.00 43.09 4.09
5261 6039 8.836413 GTGTAAATTATTGCATTACAGGAGCTA 58.164 33.333 9.52 0.00 39.46 3.32
5262 6040 8.836413 TGTAAATTATTGCATTACAGGAGCTAC 58.164 33.333 5.87 0.00 35.30 3.58
5263 6041 7.880160 AAATTATTGCATTACAGGAGCTACA 57.120 32.000 0.00 0.00 0.00 2.74
5264 6042 6.867662 ATTATTGCATTACAGGAGCTACAC 57.132 37.500 0.00 0.00 0.00 2.90
5265 6043 3.694043 TTGCATTACAGGAGCTACACA 57.306 42.857 0.00 0.00 0.00 3.72
5266 6044 3.912496 TGCATTACAGGAGCTACACAT 57.088 42.857 0.00 0.00 0.00 3.21
5267 6045 5.351948 TTGCATTACAGGAGCTACACATA 57.648 39.130 0.00 0.00 0.00 2.29
5268 6046 5.351948 TGCATTACAGGAGCTACACATAA 57.648 39.130 0.00 0.00 0.00 1.90
5269 6047 5.116180 TGCATTACAGGAGCTACACATAAC 58.884 41.667 0.00 0.00 0.00 1.89
5270 6048 4.209288 GCATTACAGGAGCTACACATAACG 59.791 45.833 0.00 0.00 0.00 3.18
5271 6049 2.295253 ACAGGAGCTACACATAACGC 57.705 50.000 0.00 0.00 0.00 4.84
5272 6050 1.200483 CAGGAGCTACACATAACGCG 58.800 55.000 3.53 3.53 0.00 6.01
5273 6051 0.527817 AGGAGCTACACATAACGCGC 60.528 55.000 5.73 0.00 0.00 6.86
5274 6052 0.804544 GGAGCTACACATAACGCGCA 60.805 55.000 5.73 0.00 0.00 6.09
5275 6053 0.996462 GAGCTACACATAACGCGCAA 59.004 50.000 5.73 0.00 0.00 4.85
5276 6054 0.999406 AGCTACACATAACGCGCAAG 59.001 50.000 5.73 0.00 43.44 4.01
5277 6055 0.719465 GCTACACATAACGCGCAAGT 59.281 50.000 5.73 0.00 41.68 3.16
5278 6056 1.921887 GCTACACATAACGCGCAAGTA 59.078 47.619 5.73 0.00 41.68 2.24
5279 6057 2.346244 GCTACACATAACGCGCAAGTAA 59.654 45.455 5.73 0.00 41.68 2.24
5280 6058 3.000925 GCTACACATAACGCGCAAGTAAT 59.999 43.478 5.73 0.00 41.68 1.89
5281 6059 4.207635 GCTACACATAACGCGCAAGTAATA 59.792 41.667 5.73 0.00 41.68 0.98
5282 6060 4.509915 ACACATAACGCGCAAGTAATAC 57.490 40.909 5.73 0.00 41.68 1.89
5283 6061 3.927758 ACACATAACGCGCAAGTAATACA 59.072 39.130 5.73 0.00 41.68 2.29
5284 6062 4.201647 ACACATAACGCGCAAGTAATACAC 60.202 41.667 5.73 0.00 41.68 2.90
5285 6063 3.927758 ACATAACGCGCAAGTAATACACA 59.072 39.130 5.73 0.00 41.68 3.72
5286 6064 4.389382 ACATAACGCGCAAGTAATACACAA 59.611 37.500 5.73 0.00 41.68 3.33
5287 6065 3.881780 AACGCGCAAGTAATACACAAA 57.118 38.095 5.73 0.00 41.68 2.83
5288 6066 3.449322 ACGCGCAAGTAATACACAAAG 57.551 42.857 5.73 0.00 41.68 2.77
5289 6067 2.158841 ACGCGCAAGTAATACACAAAGG 59.841 45.455 5.73 0.00 41.68 3.11
5290 6068 2.413796 CGCGCAAGTAATACACAAAGGA 59.586 45.455 8.75 0.00 41.68 3.36
5291 6069 3.723835 CGCGCAAGTAATACACAAAGGAC 60.724 47.826 8.75 0.00 41.68 3.85
5292 6070 3.435671 GCGCAAGTAATACACAAAGGACT 59.564 43.478 0.30 0.00 41.68 3.85
5293 6071 4.669197 GCGCAAGTAATACACAAAGGACTG 60.669 45.833 0.30 0.00 41.68 3.51
5294 6072 4.142902 CGCAAGTAATACACAAAGGACTGG 60.143 45.833 0.00 0.00 0.00 4.00
5295 6073 5.001232 GCAAGTAATACACAAAGGACTGGA 58.999 41.667 0.00 0.00 0.00 3.86
5296 6074 5.106673 GCAAGTAATACACAAAGGACTGGAC 60.107 44.000 0.00 0.00 0.00 4.02
5297 6075 5.818678 AGTAATACACAAAGGACTGGACA 57.181 39.130 0.00 0.00 0.00 4.02
5298 6076 6.182507 AGTAATACACAAAGGACTGGACAA 57.817 37.500 0.00 0.00 0.00 3.18
5299 6077 6.779860 AGTAATACACAAAGGACTGGACAAT 58.220 36.000 0.00 0.00 0.00 2.71
5300 6078 5.964958 AATACACAAAGGACTGGACAATG 57.035 39.130 0.00 0.00 0.00 2.82
5301 6079 1.956477 ACACAAAGGACTGGACAATGC 59.044 47.619 0.00 0.00 0.00 3.56
5302 6080 1.955778 CACAAAGGACTGGACAATGCA 59.044 47.619 0.00 0.00 0.00 3.96
5303 6081 2.559668 CACAAAGGACTGGACAATGCAT 59.440 45.455 0.00 0.00 0.00 3.96
5304 6082 3.006110 CACAAAGGACTGGACAATGCATT 59.994 43.478 5.99 5.99 0.00 3.56
5305 6083 3.006110 ACAAAGGACTGGACAATGCATTG 59.994 43.478 32.74 32.74 43.26 2.82
5306 6084 1.180029 AGGACTGGACAATGCATTGC 58.820 50.000 33.94 25.92 41.38 3.56
5307 6085 1.180029 GGACTGGACAATGCATTGCT 58.820 50.000 33.94 22.69 41.38 3.91
5308 6086 2.025981 AGGACTGGACAATGCATTGCTA 60.026 45.455 33.94 23.53 41.38 3.49
5309 6087 2.754552 GGACTGGACAATGCATTGCTAA 59.245 45.455 33.94 20.20 41.38 3.09
5310 6088 3.193267 GGACTGGACAATGCATTGCTAAA 59.807 43.478 33.94 18.63 41.38 1.85
5311 6089 4.142093 GGACTGGACAATGCATTGCTAAAT 60.142 41.667 33.94 19.71 41.38 1.40
5312 6090 5.067674 GGACTGGACAATGCATTGCTAAATA 59.932 40.000 33.94 16.31 41.38 1.40
5313 6091 6.405731 GGACTGGACAATGCATTGCTAAATAA 60.406 38.462 33.94 14.93 41.38 1.40
5314 6092 7.116075 ACTGGACAATGCATTGCTAAATAAT 57.884 32.000 33.94 15.79 41.38 1.28
5315 6093 7.558604 ACTGGACAATGCATTGCTAAATAATT 58.441 30.769 33.94 15.10 41.38 1.40
5316 6094 8.042515 ACTGGACAATGCATTGCTAAATAATTT 58.957 29.630 33.94 14.40 41.38 1.82
5317 6095 9.531942 CTGGACAATGCATTGCTAAATAATTTA 57.468 29.630 33.94 10.37 41.38 1.40
5318 6096 9.881649 TGGACAATGCATTGCTAAATAATTTAA 57.118 25.926 33.94 6.00 41.38 1.52
5324 6102 9.715121 ATGCATTGCTAAATAATTTAATCCAGG 57.285 29.630 10.49 0.00 0.00 4.45
5325 6103 8.703743 TGCATTGCTAAATAATTTAATCCAGGT 58.296 29.630 10.49 0.00 0.00 4.00
5326 6104 9.546428 GCATTGCTAAATAATTTAATCCAGGTT 57.454 29.630 0.16 0.00 0.00 3.50
5338 6116 8.776376 ATTTAATCCAGGTTTTAACAGCAATG 57.224 30.769 0.00 0.00 0.00 2.82
5339 6117 4.806640 ATCCAGGTTTTAACAGCAATGG 57.193 40.909 0.00 0.00 0.00 3.16
5340 6118 2.896685 TCCAGGTTTTAACAGCAATGGG 59.103 45.455 0.00 0.00 0.00 4.00
5341 6119 2.896685 CCAGGTTTTAACAGCAATGGGA 59.103 45.455 0.00 0.00 0.00 4.37
5342 6120 3.515104 CCAGGTTTTAACAGCAATGGGAT 59.485 43.478 0.00 0.00 0.00 3.85
5343 6121 4.020307 CCAGGTTTTAACAGCAATGGGATT 60.020 41.667 0.00 0.00 0.00 3.01
5344 6122 4.931002 CAGGTTTTAACAGCAATGGGATTG 59.069 41.667 0.00 0.00 43.06 2.67
5345 6123 4.020307 AGGTTTTAACAGCAATGGGATTGG 60.020 41.667 0.00 0.00 40.57 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 9.733556 ATGGTCATACAGCCGATTATTTATTTA 57.266 29.630 0.00 0.00 0.00 1.40
3 4 7.882791 TGATGGTCATACAGCCGATTATTTATT 59.117 33.333 0.00 0.00 0.00 1.40
5 6 6.764379 TGATGGTCATACAGCCGATTATTTA 58.236 36.000 0.00 0.00 0.00 1.40
7 8 5.227569 TGATGGTCATACAGCCGATTATT 57.772 39.130 0.00 0.00 0.00 1.40
8 9 4.890158 TGATGGTCATACAGCCGATTAT 57.110 40.909 0.00 0.00 0.00 1.28
9 10 4.528206 AGATGATGGTCATACAGCCGATTA 59.472 41.667 0.00 0.00 37.20 1.75
14 15 3.397482 GACAGATGATGGTCATACAGCC 58.603 50.000 0.00 0.00 37.20 4.85
16 17 4.952071 AGGACAGATGATGGTCATACAG 57.048 45.455 0.00 0.00 37.20 2.74
25 26 8.572855 TCTGTGTCTATATAGGACAGATGATG 57.427 38.462 26.07 12.32 43.17 3.07
26 27 9.593565 TTTCTGTGTCTATATAGGACAGATGAT 57.406 33.333 28.16 0.00 43.17 2.45
27 28 8.996651 TTTCTGTGTCTATATAGGACAGATGA 57.003 34.615 28.16 21.70 43.17 2.92
74 75 3.216800 ACACACTGTGCATCAATGTTCT 58.783 40.909 9.20 0.00 34.11 3.01
89 90 7.041721 CCATATGATACACACAGTTACACACT 58.958 38.462 3.65 0.00 35.35 3.55
90 91 6.816640 ACCATATGATACACACAGTTACACAC 59.183 38.462 3.65 0.00 0.00 3.82
147 168 5.057149 GCCTTAAGTTTTCACAGACTCAGA 58.943 41.667 0.97 0.00 0.00 3.27
151 172 4.816925 GTGAGCCTTAAGTTTTCACAGACT 59.183 41.667 18.68 0.00 38.36 3.24
152 173 4.816925 AGTGAGCCTTAAGTTTTCACAGAC 59.183 41.667 22.52 6.33 40.35 3.51
153 174 4.816385 CAGTGAGCCTTAAGTTTTCACAGA 59.184 41.667 22.52 0.00 40.35 3.41
155 176 4.776349 TCAGTGAGCCTTAAGTTTTCACA 58.224 39.130 22.52 9.11 40.35 3.58
156 177 5.349824 CTCAGTGAGCCTTAAGTTTTCAC 57.650 43.478 7.33 17.05 38.68 3.18
170 191 5.106038 TGCAGGAAATTTAATGCTCAGTGAG 60.106 40.000 16.21 16.21 39.42 3.51
171 192 4.766373 TGCAGGAAATTTAATGCTCAGTGA 59.234 37.500 21.28 0.00 39.42 3.41
172 193 5.063180 TGCAGGAAATTTAATGCTCAGTG 57.937 39.130 21.28 0.00 39.42 3.66
173 194 4.381292 GCTGCAGGAAATTTAATGCTCAGT 60.381 41.667 17.12 0.00 39.42 3.41
174 195 4.110482 GCTGCAGGAAATTTAATGCTCAG 58.890 43.478 17.12 14.86 39.42 3.35
175 196 3.427909 CGCTGCAGGAAATTTAATGCTCA 60.428 43.478 17.12 7.45 39.42 4.26
176 197 3.111098 CGCTGCAGGAAATTTAATGCTC 58.889 45.455 17.12 14.46 39.42 4.26
177 198 2.736400 GCGCTGCAGGAAATTTAATGCT 60.736 45.455 17.12 0.00 39.42 3.79
178 199 1.589779 GCGCTGCAGGAAATTTAATGC 59.410 47.619 17.12 16.45 39.14 3.56
179 200 3.155093 AGCGCTGCAGGAAATTTAATG 57.845 42.857 17.12 0.00 0.00 1.90
180 201 3.193267 TCAAGCGCTGCAGGAAATTTAAT 59.807 39.130 12.58 0.00 0.00 1.40
181 202 2.556189 TCAAGCGCTGCAGGAAATTTAA 59.444 40.909 12.58 0.00 0.00 1.52
182 203 2.095263 GTCAAGCGCTGCAGGAAATTTA 60.095 45.455 12.58 0.00 0.00 1.40
183 204 0.961019 TCAAGCGCTGCAGGAAATTT 59.039 45.000 12.58 0.00 0.00 1.82
184 205 0.242017 GTCAAGCGCTGCAGGAAATT 59.758 50.000 12.58 0.00 0.00 1.82
185 206 0.607489 AGTCAAGCGCTGCAGGAAAT 60.607 50.000 12.58 0.00 0.00 2.17
186 207 1.227943 AGTCAAGCGCTGCAGGAAA 60.228 52.632 12.58 0.00 0.00 3.13
187 208 1.669115 GAGTCAAGCGCTGCAGGAA 60.669 57.895 12.58 0.00 0.00 3.36
188 209 2.047844 GAGTCAAGCGCTGCAGGA 60.048 61.111 12.58 3.63 0.00 3.86
189 210 3.123620 GGAGTCAAGCGCTGCAGG 61.124 66.667 12.58 6.85 0.00 4.85
190 211 2.047465 AGGAGTCAAGCGCTGCAG 60.047 61.111 12.58 10.11 0.00 4.41
191 212 2.047844 GAGGAGTCAAGCGCTGCA 60.048 61.111 12.58 0.00 0.00 4.41
192 213 2.047844 TGAGGAGTCAAGCGCTGC 60.048 61.111 12.58 4.48 0.00 5.25
193 214 1.013005 CAGTGAGGAGTCAAGCGCTG 61.013 60.000 12.58 5.47 33.27 5.18
194 215 1.291588 CAGTGAGGAGTCAAGCGCT 59.708 57.895 2.64 2.64 33.27 5.92
195 216 1.739562 CCAGTGAGGAGTCAAGCGC 60.740 63.158 0.00 0.00 41.22 5.92
196 217 0.668706 CACCAGTGAGGAGTCAAGCG 60.669 60.000 0.00 0.00 41.22 4.68
197 218 0.321122 CCACCAGTGAGGAGTCAAGC 60.321 60.000 0.00 0.00 41.22 4.01
198 219 1.274728 CTCCACCAGTGAGGAGTCAAG 59.725 57.143 18.37 0.31 45.08 3.02
199 220 1.342074 CTCCACCAGTGAGGAGTCAA 58.658 55.000 18.37 0.00 45.08 3.18
216 237 6.426937 TGCAAGGAAAATGTAGTTACTCACTC 59.573 38.462 0.00 0.00 36.88 3.51
217 238 6.204882 GTGCAAGGAAAATGTAGTTACTCACT 59.795 38.462 0.00 0.00 39.87 3.41
218 239 6.371389 GTGCAAGGAAAATGTAGTTACTCAC 58.629 40.000 0.00 0.00 0.00 3.51
219 240 5.472137 GGTGCAAGGAAAATGTAGTTACTCA 59.528 40.000 0.00 0.00 0.00 3.41
245 266 4.516652 ATGCAGGAGAGGCTTAAGAATT 57.483 40.909 6.67 0.00 0.00 2.17
246 267 4.657969 AGTATGCAGGAGAGGCTTAAGAAT 59.342 41.667 6.67 0.00 0.00 2.40
247 268 4.033709 AGTATGCAGGAGAGGCTTAAGAA 58.966 43.478 6.67 0.00 0.00 2.52
248 269 3.647636 AGTATGCAGGAGAGGCTTAAGA 58.352 45.455 6.67 0.00 0.00 2.10
249 270 4.100808 AGAAGTATGCAGGAGAGGCTTAAG 59.899 45.833 0.00 0.00 0.00 1.85
250 271 4.033709 AGAAGTATGCAGGAGAGGCTTAA 58.966 43.478 0.00 0.00 0.00 1.85
275 296 4.357918 AGCTAAGGAAGAACAGCAAGAA 57.642 40.909 0.00 0.00 36.47 2.52
276 297 4.528596 ACTAGCTAAGGAAGAACAGCAAGA 59.471 41.667 0.00 0.00 36.47 3.02
277 298 4.826556 ACTAGCTAAGGAAGAACAGCAAG 58.173 43.478 0.00 0.00 36.47 4.01
278 299 4.528596 AGACTAGCTAAGGAAGAACAGCAA 59.471 41.667 0.00 0.00 36.47 3.91
300 321 1.135315 CAACACCGATCCAAATGGCAG 60.135 52.381 0.00 0.00 34.44 4.85
334 355 0.254747 TTACCCGGGAAATGAGGCAG 59.745 55.000 32.02 0.00 0.00 4.85
365 386 6.874278 TCTGGAGAAGAAGATGGATGTAAA 57.126 37.500 0.00 0.00 29.54 2.01
369 390 4.262981 GGGATCTGGAGAAGAAGATGGATG 60.263 50.000 0.00 0.00 38.79 3.51
371 392 3.051496 AGGGATCTGGAGAAGAAGATGGA 60.051 47.826 0.00 0.00 38.79 3.41
388 409 2.691623 AGAGCAGCAGCCAGGGAT 60.692 61.111 0.00 0.00 43.56 3.85
390 411 1.693152 TATCAGAGCAGCAGCCAGGG 61.693 60.000 0.00 0.00 43.56 4.45
431 452 3.653164 TGCCTCTTCCACCTGTATATCA 58.347 45.455 0.00 0.00 0.00 2.15
492 513 3.023832 CCCCTCTCTCTTTCTCTCAGTC 58.976 54.545 0.00 0.00 0.00 3.51
493 514 2.292192 CCCCCTCTCTCTTTCTCTCAGT 60.292 54.545 0.00 0.00 0.00 3.41
494 515 2.387757 CCCCCTCTCTCTTTCTCTCAG 58.612 57.143 0.00 0.00 0.00 3.35
495 516 2.541233 CCCCCTCTCTCTTTCTCTCA 57.459 55.000 0.00 0.00 0.00 3.27
535 556 3.151022 CTCAGCTCGGGGAGGACC 61.151 72.222 0.00 0.00 39.11 4.46
536 557 3.844090 GCTCAGCTCGGGGAGGAC 61.844 72.222 0.00 0.00 0.00 3.85
561 582 2.168496 CGAGGTTGTACTCCTTGAGGA 58.832 52.381 15.32 0.00 43.08 3.71
562 583 2.168496 TCGAGGTTGTACTCCTTGAGG 58.832 52.381 17.64 0.00 39.68 3.86
563 584 3.839293 CTTCGAGGTTGTACTCCTTGAG 58.161 50.000 19.42 13.54 43.69 3.02
564 585 2.029290 GCTTCGAGGTTGTACTCCTTGA 60.029 50.000 17.64 17.64 41.96 3.02
565 586 2.288825 TGCTTCGAGGTTGTACTCCTTG 60.289 50.000 14.65 14.65 37.71 3.61
566 587 1.968493 TGCTTCGAGGTTGTACTCCTT 59.032 47.619 10.56 0.00 35.20 3.36
567 588 1.546476 CTGCTTCGAGGTTGTACTCCT 59.454 52.381 9.34 9.34 38.09 3.69
568 589 1.544691 TCTGCTTCGAGGTTGTACTCC 59.455 52.381 0.00 0.00 33.93 3.85
569 590 2.416162 CCTCTGCTTCGAGGTTGTACTC 60.416 54.545 8.54 0.00 44.49 2.59
570 591 1.546476 CCTCTGCTTCGAGGTTGTACT 59.454 52.381 8.54 0.00 44.49 2.73
571 592 1.997669 CCTCTGCTTCGAGGTTGTAC 58.002 55.000 8.54 0.00 44.49 2.90
592 613 4.722279 CCCCCTTCTTAACAGTATCCTTCT 59.278 45.833 0.00 0.00 0.00 2.85
639 660 1.550072 GAGACCTTCTCAAGAGCAGCT 59.450 52.381 0.00 0.00 42.90 4.24
686 707 5.677319 TTCATACCTTAGGTGGAAGTCAG 57.323 43.478 15.13 0.00 36.19 3.51
780 801 0.987294 ATACCACTCCAGCTGCAGTT 59.013 50.000 7.82 6.37 0.00 3.16
787 808 5.105310 TCAGTCTTTTCTATACCACTCCAGC 60.105 44.000 0.00 0.00 0.00 4.85
801 822 6.035542 GCTAGCAAGTCTACATCAGTCTTTTC 59.964 42.308 10.63 0.00 31.29 2.29
850 871 9.994432 GTGAGACACAAATTAATAGGATTCTTG 57.006 33.333 0.00 0.00 34.08 3.02
876 897 1.077930 CCTGACAGGATGCAGTGGG 60.078 63.158 17.22 0.00 42.53 4.61
890 911 4.532126 GTGGATCATGGATACCATACCTGA 59.468 45.833 2.86 0.00 43.15 3.86
925 946 1.802960 CTGGCTTATCTTAGCATGGCG 59.197 52.381 0.00 0.00 43.02 5.69
961 982 2.574399 GAGAGTCTCCACCGGTGC 59.426 66.667 29.75 15.40 0.00 5.01
985 1006 1.701847 AGCCATCACTGGAACTCAACT 59.298 47.619 0.00 0.00 46.37 3.16
986 1007 1.808945 CAGCCATCACTGGAACTCAAC 59.191 52.381 0.00 0.00 46.37 3.18
987 1008 1.699083 TCAGCCATCACTGGAACTCAA 59.301 47.619 0.00 0.00 46.37 3.02
988 1009 1.277273 CTCAGCCATCACTGGAACTCA 59.723 52.381 0.00 0.00 46.37 3.41
1050 1071 2.686915 GCCTAGTAACTTAGCCTCGTCA 59.313 50.000 0.00 0.00 0.00 4.35
1442 1463 1.339055 CCTCCATCAGCTTTTGGTCGA 60.339 52.381 10.71 0.00 34.48 4.20
1447 1468 0.449388 GACGCCTCCATCAGCTTTTG 59.551 55.000 0.00 0.00 0.00 2.44
1449 1470 1.448540 CGACGCCTCCATCAGCTTT 60.449 57.895 0.00 0.00 0.00 3.51
1623 1653 0.594796 GTTGTTGTTCAAGCCAGCGG 60.595 55.000 0.00 0.00 36.66 5.52
1625 1655 2.159254 TCTTGTTGTTGTTCAAGCCAGC 60.159 45.455 0.00 0.00 40.27 4.85
1765 1795 4.944619 TCAGGCAAGACCAGTCATATAG 57.055 45.455 0.00 0.00 43.14 1.31
1774 1804 1.478654 GGGTTCTTTCAGGCAAGACCA 60.479 52.381 0.00 0.00 43.14 4.02
1786 1867 4.814967 TCAAGAAAATCCCAGGGTTCTTT 58.185 39.130 16.69 9.95 38.05 2.52
1808 1889 7.419981 CCTCTTCAAGGTTCTCCAAGATATCAT 60.420 40.741 5.32 0.00 40.67 2.45
1848 1929 2.683968 TCCTCACCAAATTCTTCGACG 58.316 47.619 0.00 0.00 0.00 5.12
1851 1932 3.077359 AGCTTCCTCACCAAATTCTTCG 58.923 45.455 0.00 0.00 0.00 3.79
2083 2170 0.246635 CAGGAACTCGATTCACCCGT 59.753 55.000 8.98 0.00 39.30 5.28
2196 2286 2.715532 TATGATCCTCGCCGGCTTGC 62.716 60.000 26.68 8.21 0.00 4.01
2295 2386 7.379059 TTCTCCCATTGATTTATCTAGCTGA 57.621 36.000 0.00 0.00 0.00 4.26
2341 2432 4.828925 GCAGTCCTCCTCGCCTGC 62.829 72.222 0.00 0.00 42.94 4.85
2503 2600 1.541147 CAAATCTCGCAAGGCCTTTGA 59.459 47.619 17.61 15.89 39.21 2.69
2640 2737 3.134574 TGCCGATTTGTAAGTTGGAGT 57.865 42.857 0.00 0.00 0.00 3.85
2799 2908 0.250467 ACACGAGGCTGTTGCTCAAT 60.250 50.000 0.00 0.00 39.59 2.57
3134 3249 1.177401 GTGTTCTTTCCTGGCCATCC 58.823 55.000 5.51 0.00 0.00 3.51
4071 4210 7.816411 ACCCATTAGTCTGGATTATAAGCTTT 58.184 34.615 3.20 0.00 38.69 3.51
4430 4571 6.591448 TCACACACAAAGCAGAATCATAGTAG 59.409 38.462 0.00 0.00 0.00 2.57
4494 4639 3.182572 GGCTGTATAGAAATGAACTCGCG 59.817 47.826 0.00 0.00 0.00 5.87
4562 4707 3.064820 GGACAAATAAGCATACACCCACG 59.935 47.826 0.00 0.00 0.00 4.94
4564 4709 4.584638 AGGACAAATAAGCATACACCCA 57.415 40.909 0.00 0.00 0.00 4.51
4794 5569 9.494271 TGCTGGTAGAATTCAATCTTATATGAC 57.506 33.333 8.44 0.00 0.00 3.06
4796 5571 9.499479 ACTGCTGGTAGAATTCAATCTTATATG 57.501 33.333 8.44 0.00 0.00 1.78
4816 5591 0.320683 TGGATGAACCGACACTGCTG 60.321 55.000 0.00 0.00 42.61 4.41
4824 5599 1.078918 CAGCAGCTGGATGAACCGA 60.079 57.895 17.12 0.00 42.61 4.69
4881 5656 4.999950 AGAAGAACTGCAGTTGGAATAGTG 59.000 41.667 35.67 0.00 38.56 2.74
4886 5661 3.845781 AGAGAAGAACTGCAGTTGGAA 57.154 42.857 35.67 0.00 38.56 3.53
4915 5690 2.092914 GGGTCGAGGGAATGATGAACTT 60.093 50.000 0.00 0.00 0.00 2.66
4932 5707 1.429463 CTGAAACGCTGTACTGGGTC 58.571 55.000 20.15 11.08 32.56 4.46
4934 5709 0.602638 TGCTGAAACGCTGTACTGGG 60.603 55.000 14.12 14.12 0.00 4.45
4945 5722 3.632189 AGCGTTTTGAGAATGCTGAAAC 58.368 40.909 1.25 0.00 33.99 2.78
4963 5740 8.475331 TTTTAGGAGTATAACTGAAAGAAGCG 57.525 34.615 0.00 0.00 37.43 4.68
5102 5880 4.457603 CGATCAGTTTGTTACCATGGGAAA 59.542 41.667 12.17 4.09 0.00 3.13
5108 5886 3.259064 CCGTCGATCAGTTTGTTACCAT 58.741 45.455 0.00 0.00 0.00 3.55
5141 5919 3.637432 TCATTTCATCCGTTGTTGCAAC 58.363 40.909 22.83 22.83 0.00 4.17
5155 5933 1.962807 CCTGGCTGGTTGTTCATTTCA 59.037 47.619 1.62 0.00 0.00 2.69
5156 5934 1.337167 GCCTGGCTGGTTGTTCATTTC 60.337 52.381 12.43 0.00 38.35 2.17
5157 5935 0.681175 GCCTGGCTGGTTGTTCATTT 59.319 50.000 12.43 0.00 38.35 2.32
5158 5936 1.187567 GGCCTGGCTGGTTGTTCATT 61.188 55.000 19.68 0.00 38.35 2.57
5159 5937 1.607467 GGCCTGGCTGGTTGTTCAT 60.607 57.895 19.68 0.00 38.35 2.57
5160 5938 2.203480 GGCCTGGCTGGTTGTTCA 60.203 61.111 19.68 0.00 38.35 3.18
5161 5939 2.991540 GGGCCTGGCTGGTTGTTC 60.992 66.667 19.68 0.00 38.35 3.18
5162 5940 3.815407 CTGGGCCTGGCTGGTTGTT 62.815 63.158 19.68 0.00 38.35 2.83
5163 5941 4.290622 CTGGGCCTGGCTGGTTGT 62.291 66.667 19.68 0.00 38.35 3.32
5171 5949 4.115199 GTACCAGCCTGGGCCTGG 62.115 72.222 24.13 24.13 43.37 4.45
5172 5950 4.115199 GGTACCAGCCTGGGCCTG 62.115 72.222 16.70 3.68 43.37 4.85
5185 5963 3.817084 GTGGTTCAGTAAGGTTTGGGTAC 59.183 47.826 0.00 0.00 0.00 3.34
5186 5964 3.181441 GGTGGTTCAGTAAGGTTTGGGTA 60.181 47.826 0.00 0.00 0.00 3.69
5187 5965 2.423803 GGTGGTTCAGTAAGGTTTGGGT 60.424 50.000 0.00 0.00 0.00 4.51
5188 5966 2.235891 GGTGGTTCAGTAAGGTTTGGG 58.764 52.381 0.00 0.00 0.00 4.12
5189 5967 2.621526 GTGGTGGTTCAGTAAGGTTTGG 59.378 50.000 0.00 0.00 0.00 3.28
5190 5968 3.066203 GTGTGGTGGTTCAGTAAGGTTTG 59.934 47.826 0.00 0.00 0.00 2.93
5191 5969 3.284617 GTGTGGTGGTTCAGTAAGGTTT 58.715 45.455 0.00 0.00 0.00 3.27
5192 5970 2.422377 GGTGTGGTGGTTCAGTAAGGTT 60.422 50.000 0.00 0.00 0.00 3.50
5193 5971 1.142262 GGTGTGGTGGTTCAGTAAGGT 59.858 52.381 0.00 0.00 0.00 3.50
5194 5972 1.420138 AGGTGTGGTGGTTCAGTAAGG 59.580 52.381 0.00 0.00 0.00 2.69
5195 5973 2.930826 AGGTGTGGTGGTTCAGTAAG 57.069 50.000 0.00 0.00 0.00 2.34
5196 5974 6.630203 AATATAGGTGTGGTGGTTCAGTAA 57.370 37.500 0.00 0.00 0.00 2.24
5197 5975 6.213802 TCAAATATAGGTGTGGTGGTTCAGTA 59.786 38.462 0.00 0.00 0.00 2.74
5198 5976 5.013704 TCAAATATAGGTGTGGTGGTTCAGT 59.986 40.000 0.00 0.00 0.00 3.41
5199 5977 5.496556 TCAAATATAGGTGTGGTGGTTCAG 58.503 41.667 0.00 0.00 0.00 3.02
5200 5978 5.506730 TCAAATATAGGTGTGGTGGTTCA 57.493 39.130 0.00 0.00 0.00 3.18
5201 5979 5.357032 CCTTCAAATATAGGTGTGGTGGTTC 59.643 44.000 0.00 0.00 0.00 3.62
5202 5980 5.261216 CCTTCAAATATAGGTGTGGTGGTT 58.739 41.667 0.00 0.00 0.00 3.67
5203 5981 4.855340 CCTTCAAATATAGGTGTGGTGGT 58.145 43.478 0.00 0.00 0.00 4.16
5204 5982 3.632145 GCCTTCAAATATAGGTGTGGTGG 59.368 47.826 0.00 0.00 33.91 4.61
5205 5983 4.269183 TGCCTTCAAATATAGGTGTGGTG 58.731 43.478 0.00 0.00 33.91 4.17
5206 5984 4.227300 TCTGCCTTCAAATATAGGTGTGGT 59.773 41.667 0.00 0.00 33.91 4.16
5207 5985 4.780815 TCTGCCTTCAAATATAGGTGTGG 58.219 43.478 0.00 0.00 33.91 4.17
5208 5986 5.295292 CACTCTGCCTTCAAATATAGGTGTG 59.705 44.000 0.00 0.00 33.91 3.82
5209 5987 5.431765 CACTCTGCCTTCAAATATAGGTGT 58.568 41.667 0.00 0.00 33.91 4.16
5210 5988 4.818546 CCACTCTGCCTTCAAATATAGGTG 59.181 45.833 0.00 0.00 33.91 4.00
5211 5989 4.687219 GCCACTCTGCCTTCAAATATAGGT 60.687 45.833 0.00 0.00 33.91 3.08
5212 5990 3.817647 GCCACTCTGCCTTCAAATATAGG 59.182 47.826 0.00 0.00 34.54 2.57
5213 5991 3.496130 CGCCACTCTGCCTTCAAATATAG 59.504 47.826 0.00 0.00 0.00 1.31
5214 5992 3.118408 ACGCCACTCTGCCTTCAAATATA 60.118 43.478 0.00 0.00 0.00 0.86
5215 5993 2.292267 CGCCACTCTGCCTTCAAATAT 58.708 47.619 0.00 0.00 0.00 1.28
5216 5994 1.003118 ACGCCACTCTGCCTTCAAATA 59.997 47.619 0.00 0.00 0.00 1.40
5217 5995 0.250901 ACGCCACTCTGCCTTCAAAT 60.251 50.000 0.00 0.00 0.00 2.32
5218 5996 1.148273 ACGCCACTCTGCCTTCAAA 59.852 52.632 0.00 0.00 0.00 2.69
5219 5997 1.597854 CACGCCACTCTGCCTTCAA 60.598 57.895 0.00 0.00 0.00 2.69
5220 5998 1.468506 TACACGCCACTCTGCCTTCA 61.469 55.000 0.00 0.00 0.00 3.02
5221 5999 0.320421 TTACACGCCACTCTGCCTTC 60.320 55.000 0.00 0.00 0.00 3.46
5222 6000 0.107831 TTTACACGCCACTCTGCCTT 59.892 50.000 0.00 0.00 0.00 4.35
5223 6001 0.324943 ATTTACACGCCACTCTGCCT 59.675 50.000 0.00 0.00 0.00 4.75
5224 6002 1.165270 AATTTACACGCCACTCTGCC 58.835 50.000 0.00 0.00 0.00 4.85
5225 6003 4.342772 CAATAATTTACACGCCACTCTGC 58.657 43.478 0.00 0.00 0.00 4.26
5226 6004 4.142708 TGCAATAATTTACACGCCACTCTG 60.143 41.667 0.00 0.00 0.00 3.35
5227 6005 4.006989 TGCAATAATTTACACGCCACTCT 58.993 39.130 0.00 0.00 0.00 3.24
5228 6006 4.349663 TGCAATAATTTACACGCCACTC 57.650 40.909 0.00 0.00 0.00 3.51
5229 6007 4.981806 ATGCAATAATTTACACGCCACT 57.018 36.364 0.00 0.00 0.00 4.00
5230 6008 6.030849 TGTAATGCAATAATTTACACGCCAC 58.969 36.000 5.87 0.00 32.46 5.01
5231 6009 6.196079 TGTAATGCAATAATTTACACGCCA 57.804 33.333 5.87 0.00 32.46 5.69
5232 6010 5.685511 CCTGTAATGCAATAATTTACACGCC 59.314 40.000 5.87 0.00 33.53 5.68
5233 6011 6.491394 TCCTGTAATGCAATAATTTACACGC 58.509 36.000 5.87 0.00 33.53 5.34
5234 6012 6.632834 GCTCCTGTAATGCAATAATTTACACG 59.367 38.462 5.87 3.67 33.53 4.49
5235 6013 7.707104 AGCTCCTGTAATGCAATAATTTACAC 58.293 34.615 5.87 0.00 33.53 2.90
5236 6014 7.880160 AGCTCCTGTAATGCAATAATTTACA 57.120 32.000 8.99 8.99 35.27 2.41
5237 6015 8.836413 TGTAGCTCCTGTAATGCAATAATTTAC 58.164 33.333 0.00 0.00 0.00 2.01
5238 6016 8.836413 GTGTAGCTCCTGTAATGCAATAATTTA 58.164 33.333 0.00 0.00 0.00 1.40
5239 6017 7.339212 TGTGTAGCTCCTGTAATGCAATAATTT 59.661 33.333 0.00 0.00 0.00 1.82
5240 6018 6.828273 TGTGTAGCTCCTGTAATGCAATAATT 59.172 34.615 0.00 0.00 0.00 1.40
5241 6019 6.356556 TGTGTAGCTCCTGTAATGCAATAAT 58.643 36.000 0.00 0.00 0.00 1.28
5242 6020 5.739959 TGTGTAGCTCCTGTAATGCAATAA 58.260 37.500 0.00 0.00 0.00 1.40
5243 6021 5.351948 TGTGTAGCTCCTGTAATGCAATA 57.648 39.130 0.00 0.00 0.00 1.90
5244 6022 4.220693 TGTGTAGCTCCTGTAATGCAAT 57.779 40.909 0.00 0.00 0.00 3.56
5245 6023 3.694043 TGTGTAGCTCCTGTAATGCAA 57.306 42.857 0.00 0.00 0.00 4.08
5246 6024 3.912496 ATGTGTAGCTCCTGTAATGCA 57.088 42.857 0.00 0.00 0.00 3.96
5247 6025 4.209288 CGTTATGTGTAGCTCCTGTAATGC 59.791 45.833 0.00 0.00 0.00 3.56
5248 6026 4.209288 GCGTTATGTGTAGCTCCTGTAATG 59.791 45.833 0.00 0.00 0.00 1.90
5249 6027 4.369182 GCGTTATGTGTAGCTCCTGTAAT 58.631 43.478 0.00 0.00 0.00 1.89
5250 6028 3.732774 CGCGTTATGTGTAGCTCCTGTAA 60.733 47.826 0.00 0.00 0.00 2.41
5251 6029 2.223409 CGCGTTATGTGTAGCTCCTGTA 60.223 50.000 0.00 0.00 0.00 2.74
5252 6030 1.469251 CGCGTTATGTGTAGCTCCTGT 60.469 52.381 0.00 0.00 0.00 4.00
5253 6031 1.200483 CGCGTTATGTGTAGCTCCTG 58.800 55.000 0.00 0.00 0.00 3.86
5254 6032 0.527817 GCGCGTTATGTGTAGCTCCT 60.528 55.000 8.43 0.00 0.00 3.69
5255 6033 0.804544 TGCGCGTTATGTGTAGCTCC 60.805 55.000 8.43 0.00 0.00 4.70
5256 6034 0.996462 TTGCGCGTTATGTGTAGCTC 59.004 50.000 8.43 0.00 0.00 4.09
5257 6035 0.999406 CTTGCGCGTTATGTGTAGCT 59.001 50.000 8.43 0.00 0.00 3.32
5258 6036 0.719465 ACTTGCGCGTTATGTGTAGC 59.281 50.000 8.43 0.00 0.00 3.58
5259 6037 4.772046 ATTACTTGCGCGTTATGTGTAG 57.228 40.909 8.43 0.00 0.00 2.74
5260 6038 5.004630 GTGTATTACTTGCGCGTTATGTGTA 59.995 40.000 8.43 0.32 0.00 2.90
5261 6039 3.927758 TGTATTACTTGCGCGTTATGTGT 59.072 39.130 8.43 1.31 0.00 3.72
5262 6040 4.201637 TGTGTATTACTTGCGCGTTATGTG 60.202 41.667 8.43 0.00 0.00 3.21
5263 6041 3.927758 TGTGTATTACTTGCGCGTTATGT 59.072 39.130 8.43 8.50 0.00 2.29
5264 6042 4.508376 TGTGTATTACTTGCGCGTTATG 57.492 40.909 8.43 2.35 0.00 1.90
5265 6043 5.446741 CCTTTGTGTATTACTTGCGCGTTAT 60.447 40.000 8.43 0.00 0.00 1.89
5266 6044 4.143073 CCTTTGTGTATTACTTGCGCGTTA 60.143 41.667 8.43 0.00 0.00 3.18
5267 6045 3.364565 CCTTTGTGTATTACTTGCGCGTT 60.365 43.478 8.43 0.00 0.00 4.84
5268 6046 2.158841 CCTTTGTGTATTACTTGCGCGT 59.841 45.455 8.43 0.00 0.00 6.01
5269 6047 2.413796 TCCTTTGTGTATTACTTGCGCG 59.586 45.455 0.00 0.00 0.00 6.86
5270 6048 3.435671 AGTCCTTTGTGTATTACTTGCGC 59.564 43.478 0.00 0.00 0.00 6.09
5271 6049 4.142902 CCAGTCCTTTGTGTATTACTTGCG 60.143 45.833 0.00 0.00 0.00 4.85
5272 6050 5.001232 TCCAGTCCTTTGTGTATTACTTGC 58.999 41.667 0.00 0.00 0.00 4.01
5273 6051 5.995282 TGTCCAGTCCTTTGTGTATTACTTG 59.005 40.000 0.00 0.00 0.00 3.16
5274 6052 6.182507 TGTCCAGTCCTTTGTGTATTACTT 57.817 37.500 0.00 0.00 0.00 2.24
5275 6053 5.818678 TGTCCAGTCCTTTGTGTATTACT 57.181 39.130 0.00 0.00 0.00 2.24
5276 6054 6.622896 GCATTGTCCAGTCCTTTGTGTATTAC 60.623 42.308 0.00 0.00 0.00 1.89
5277 6055 5.414454 GCATTGTCCAGTCCTTTGTGTATTA 59.586 40.000 0.00 0.00 0.00 0.98
5278 6056 4.218417 GCATTGTCCAGTCCTTTGTGTATT 59.782 41.667 0.00 0.00 0.00 1.89
5279 6057 3.758554 GCATTGTCCAGTCCTTTGTGTAT 59.241 43.478 0.00 0.00 0.00 2.29
5280 6058 3.146066 GCATTGTCCAGTCCTTTGTGTA 58.854 45.455 0.00 0.00 0.00 2.90
5281 6059 1.956477 GCATTGTCCAGTCCTTTGTGT 59.044 47.619 0.00 0.00 0.00 3.72
5282 6060 1.955778 TGCATTGTCCAGTCCTTTGTG 59.044 47.619 0.00 0.00 0.00 3.33
5283 6061 2.363306 TGCATTGTCCAGTCCTTTGT 57.637 45.000 0.00 0.00 0.00 2.83
5284 6062 3.581755 CAATGCATTGTCCAGTCCTTTG 58.418 45.455 27.81 2.45 33.22 2.77
5285 6063 2.028748 GCAATGCATTGTCCAGTCCTTT 60.029 45.455 33.67 0.00 39.88 3.11
5286 6064 1.547372 GCAATGCATTGTCCAGTCCTT 59.453 47.619 33.67 0.00 39.88 3.36
5287 6065 1.180029 GCAATGCATTGTCCAGTCCT 58.820 50.000 33.67 0.00 39.88 3.85
5288 6066 1.180029 AGCAATGCATTGTCCAGTCC 58.820 50.000 33.67 18.86 39.88 3.85
5289 6067 4.439305 TTTAGCAATGCATTGTCCAGTC 57.561 40.909 33.67 19.48 39.88 3.51
5290 6068 6.528537 TTATTTAGCAATGCATTGTCCAGT 57.471 33.333 33.67 21.64 39.88 4.00
5291 6069 8.428186 AAATTATTTAGCAATGCATTGTCCAG 57.572 30.769 33.67 14.21 39.88 3.86
5292 6070 9.881649 TTAAATTATTTAGCAATGCATTGTCCA 57.118 25.926 33.67 19.66 39.88 4.02
5298 6076 9.715121 CCTGGATTAAATTATTTAGCAATGCAT 57.285 29.630 8.35 0.00 0.00 3.96
5299 6077 8.703743 ACCTGGATTAAATTATTTAGCAATGCA 58.296 29.630 8.35 0.00 0.00 3.96
5300 6078 9.546428 AACCTGGATTAAATTATTTAGCAATGC 57.454 29.630 0.00 0.00 0.00 3.56
5312 6090 9.218440 CATTGCTGTTAAAACCTGGATTAAATT 57.782 29.630 0.00 0.00 0.00 1.82
5313 6091 7.823799 CCATTGCTGTTAAAACCTGGATTAAAT 59.176 33.333 0.00 0.00 0.00 1.40
5314 6092 7.158021 CCATTGCTGTTAAAACCTGGATTAAA 58.842 34.615 0.00 0.00 0.00 1.52
5315 6093 6.295575 CCCATTGCTGTTAAAACCTGGATTAA 60.296 38.462 0.00 3.07 0.00 1.40
5316 6094 5.186797 CCCATTGCTGTTAAAACCTGGATTA 59.813 40.000 0.00 0.00 0.00 1.75
5317 6095 4.020307 CCCATTGCTGTTAAAACCTGGATT 60.020 41.667 0.00 0.00 0.00 3.01
5318 6096 3.515104 CCCATTGCTGTTAAAACCTGGAT 59.485 43.478 0.00 0.00 0.00 3.41
5319 6097 2.896685 CCCATTGCTGTTAAAACCTGGA 59.103 45.455 0.00 0.00 0.00 3.86
5320 6098 2.896685 TCCCATTGCTGTTAAAACCTGG 59.103 45.455 0.00 0.00 0.00 4.45
5321 6099 4.806640 ATCCCATTGCTGTTAAAACCTG 57.193 40.909 0.00 0.00 0.00 4.00
5322 6100 4.020307 CCAATCCCATTGCTGTTAAAACCT 60.020 41.667 0.00 0.00 38.92 3.50
5323 6101 4.252878 CCAATCCCATTGCTGTTAAAACC 58.747 43.478 0.00 0.00 38.92 3.27
5324 6102 4.893608 ACCAATCCCATTGCTGTTAAAAC 58.106 39.130 0.00 0.00 38.92 2.43
5325 6103 5.070981 TGAACCAATCCCATTGCTGTTAAAA 59.929 36.000 0.00 0.00 38.92 1.52
5326 6104 4.590647 TGAACCAATCCCATTGCTGTTAAA 59.409 37.500 0.00 0.00 38.92 1.52
5327 6105 4.155709 TGAACCAATCCCATTGCTGTTAA 58.844 39.130 0.00 0.00 38.92 2.01
5328 6106 3.772387 TGAACCAATCCCATTGCTGTTA 58.228 40.909 0.00 0.00 38.92 2.41
5329 6107 2.607499 TGAACCAATCCCATTGCTGTT 58.393 42.857 0.00 0.00 38.92 3.16
5330 6108 2.307496 TGAACCAATCCCATTGCTGT 57.693 45.000 0.00 0.00 38.92 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.