Multiple sequence alignment - TraesCS1A01G039100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G039100 chr1A 100.000 5424 0 0 1 5424 21286282 21280859 0.000000e+00 10017.0
1 TraesCS1A01G039100 chr1A 82.989 1740 188 45 2326 4030 22345034 22346700 0.000000e+00 1474.0
2 TraesCS1A01G039100 chr1A 83.167 1004 138 14 2961 3946 22483411 22484401 0.000000e+00 889.0
3 TraesCS1A01G039100 chr1A 80.336 773 110 24 4033 4782 22346870 22347623 1.030000e-151 547.0
4 TraesCS1A01G039100 chr1A 84.000 250 34 5 3 249 53499828 53499582 9.080000e-58 235.0
5 TraesCS1A01G039100 chr1A 87.745 204 16 7 2001 2204 22340397 22340591 4.230000e-56 230.0
6 TraesCS1A01G039100 chr1D 92.680 4891 195 57 622 5424 19880067 19875252 0.000000e+00 6898.0
7 TraesCS1A01G039100 chr1D 85.195 1128 130 17 2933 4044 20647314 20648420 0.000000e+00 1123.0
8 TraesCS1A01G039100 chr1D 83.051 708 70 22 829 1497 20719499 20720195 1.010000e-166 597.0
9 TraesCS1A01G039100 chr1D 86.667 420 50 4 2950 3369 20818842 20819255 1.380000e-125 460.0
10 TraesCS1A01G039100 chr1D 83.862 378 46 10 258 621 19880520 19880144 4.020000e-91 346.0
11 TraesCS1A01G039100 chr1D 84.539 304 40 3 4100 4396 20833795 20834098 1.480000e-75 294.0
12 TraesCS1A01G039100 chr1D 82.375 261 32 6 2 248 494430227 494429967 1.180000e-51 215.0
13 TraesCS1A01G039100 chr1D 87.500 160 20 0 3875 4034 19871281 19871122 9.280000e-43 185.0
14 TraesCS1A01G039100 chr1D 82.938 211 21 4 2094 2304 20895253 20895448 5.580000e-40 176.0
15 TraesCS1A01G039100 chr1B 94.443 3977 142 23 758 4703 31860864 31856936 0.000000e+00 6047.0
16 TraesCS1A01G039100 chr1B 94.626 428 20 3 5000 5424 31856923 31856496 0.000000e+00 660.0
17 TraesCS1A01G039100 chr1B 87.368 285 34 2 2363 2646 32228832 32228549 5.240000e-85 326.0
18 TraesCS1A01G039100 chr1B 81.435 237 42 2 3792 4027 37762560 37762795 5.540000e-45 193.0
19 TraesCS1A01G039100 chr1B 85.625 160 23 0 3875 4034 31852938 31852779 9.340000e-38 169.0
20 TraesCS1A01G039100 chr1B 77.682 233 25 14 622 827 31861105 31860873 3.430000e-22 117.0
21 TraesCS1A01G039100 chr1B 97.059 34 0 1 467 499 660671993 660672026 7.590000e-04 56.5
22 TraesCS1A01G039100 chrUn 89.402 368 34 3 1734 2096 393824990 393824623 4.950000e-125 459.0
23 TraesCS1A01G039100 chrUn 88.624 378 36 5 1724 2096 10020435 10020810 2.300000e-123 453.0
24 TraesCS1A01G039100 chrUn 87.459 303 31 5 1724 2021 10015937 10016237 5.200000e-90 342.0
25 TraesCS1A01G039100 chrUn 87.459 303 31 5 1724 2021 353901958 353902258 5.200000e-90 342.0
26 TraesCS1A01G039100 chrUn 94.595 74 4 0 2023 2096 397570586 397570659 1.230000e-21 115.0
27 TraesCS1A01G039100 chr4D 84.228 298 29 5 2094 2391 73260340 73260619 1.920000e-69 274.0
28 TraesCS1A01G039100 chr4D 81.557 244 39 6 1 241 415291820 415292060 4.290000e-46 196.0
29 TraesCS1A01G039100 chr4D 78.571 308 35 15 3607 3899 73260632 73260923 2.010000e-39 174.0
30 TraesCS1A01G039100 chr4D 85.124 121 15 2 622 740 9557362 9557243 2.650000e-23 121.0
31 TraesCS1A01G039100 chr7D 85.000 260 25 5 3 249 469521205 469521463 9.020000e-63 252.0
32 TraesCS1A01G039100 chr7D 85.294 204 25 5 1 201 42159405 42159204 7.120000e-49 206.0
33 TraesCS1A01G039100 chr7D 86.239 109 10 3 625 729 75346937 75346830 4.440000e-21 113.0
34 TraesCS1A01G039100 chr2A 83.539 243 31 7 2 238 767796800 767796561 9.150000e-53 219.0
35 TraesCS1A01G039100 chr2A 81.923 260 30 3 1 248 14175949 14176203 2.560000e-48 204.0
36 TraesCS1A01G039100 chr2A 86.486 111 10 3 634 740 361656374 361656265 3.430000e-22 117.0
37 TraesCS1A01G039100 chr2A 84.298 121 16 2 622 740 69218321 69218440 1.230000e-21 115.0
38 TraesCS1A01G039100 chr2A 83.871 124 13 5 622 740 605305564 605305685 1.600000e-20 111.0
39 TraesCS1A01G039100 chr3D 82.510 263 31 7 1 249 508202080 508201819 3.290000e-52 217.0
40 TraesCS1A01G039100 chr5D 85.149 202 26 4 3 201 324352400 324352600 2.560000e-48 204.0
41 TraesCS1A01G039100 chr5A 86.607 112 10 4 622 729 301364414 301364524 9.540000e-23 119.0
42 TraesCS1A01G039100 chr5A 85.586 111 13 3 622 730 47587921 47588030 4.440000e-21 113.0
43 TraesCS1A01G039100 chr3A 86.916 107 10 3 636 740 516128523 516128419 3.430000e-22 117.0
44 TraesCS1A01G039100 chr3A 79.121 91 16 3 445 532 191834326 191834416 5.870000e-05 60.2
45 TraesCS1A01G039100 chr2B 84.034 119 14 4 622 740 142894497 142894610 5.740000e-20 110.0
46 TraesCS1A01G039100 chr6A 79.825 114 19 3 442 554 83054589 83054699 4.500000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G039100 chr1A 21280859 21286282 5423 True 10017.000000 10017 100.0000 1 5424 1 chr1A.!!$R1 5423
1 TraesCS1A01G039100 chr1A 22345034 22347623 2589 False 1010.500000 1474 81.6625 2326 4782 2 chr1A.!!$F3 2456
2 TraesCS1A01G039100 chr1A 22483411 22484401 990 False 889.000000 889 83.1670 2961 3946 1 chr1A.!!$F2 985
3 TraesCS1A01G039100 chr1D 19871122 19880520 9398 True 2476.333333 6898 88.0140 258 5424 3 chr1D.!!$R2 5166
4 TraesCS1A01G039100 chr1D 20647314 20648420 1106 False 1123.000000 1123 85.1950 2933 4044 1 chr1D.!!$F1 1111
5 TraesCS1A01G039100 chr1D 20719499 20720195 696 False 597.000000 597 83.0510 829 1497 1 chr1D.!!$F2 668
6 TraesCS1A01G039100 chr1B 31852779 31861105 8326 True 1748.250000 6047 88.0940 622 5424 4 chr1B.!!$R2 4802
7 TraesCS1A01G039100 chr4D 73260340 73260923 583 False 224.000000 274 81.3995 2094 3899 2 chr4D.!!$F2 1805

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
251 252 0.165944 GTCTGGGCATCAAAACGTCG 59.834 55.0 0.0 0.00 0.00 5.12 F
674 766 0.248565 TGACATGCCAGCTCAGTCTC 59.751 55.0 0.0 0.00 0.00 3.36 F
2477 2753 0.749649 AGCATCTGATGGACGAGGTC 59.250 55.0 18.6 0.22 0.00 3.85 F
4284 4800 0.034574 TGTGACAACCAAGTGCAGGT 60.035 50.0 0.0 0.00 42.34 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1502 1757 0.248949 GACCGGCGATGACTAAGACC 60.249 60.000 9.3 0.0 0.00 3.85 R
2573 2849 0.473694 TGCAACAGGAGGGAGAAGGA 60.474 55.000 0.0 0.0 0.00 3.36 R
4311 4827 0.190069 GGACCTTTCCCCACCCTTTT 59.810 55.000 0.0 0.0 35.57 2.27 R
5095 5640 4.449743 TCAGATAAAAACGGAGAAACCACG 59.550 41.667 0.0 0.0 38.90 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.507733 AATCATTTGGACATCTAAGCAGATC 57.492 36.000 0.00 0.00 39.62 2.75
25 26 6.244552 TCATTTGGACATCTAAGCAGATCT 57.755 37.500 0.00 0.00 39.62 2.75
26 27 6.286758 TCATTTGGACATCTAAGCAGATCTC 58.713 40.000 0.00 0.00 39.62 2.75
27 28 3.998099 TGGACATCTAAGCAGATCTCG 57.002 47.619 0.00 0.00 39.62 4.04
28 29 2.625314 TGGACATCTAAGCAGATCTCGG 59.375 50.000 0.00 0.00 39.62 4.63
29 30 2.609244 GGACATCTAAGCAGATCTCGGC 60.609 54.545 0.00 0.00 39.62 5.54
30 31 2.034878 ACATCTAAGCAGATCTCGGCA 58.965 47.619 7.70 0.00 39.62 5.69
31 32 2.432146 ACATCTAAGCAGATCTCGGCAA 59.568 45.455 7.70 0.00 39.62 4.52
32 33 3.118629 ACATCTAAGCAGATCTCGGCAAA 60.119 43.478 7.70 0.00 39.62 3.68
33 34 3.610040 TCTAAGCAGATCTCGGCAAAA 57.390 42.857 7.70 0.00 39.54 2.44
34 35 3.937814 TCTAAGCAGATCTCGGCAAAAA 58.062 40.909 7.70 0.00 39.54 1.94
55 56 7.654022 AAAAAGACAAATTGGGAGTCTGTAA 57.346 32.000 0.00 0.00 41.45 2.41
56 57 7.654022 AAAAGACAAATTGGGAGTCTGTAAA 57.346 32.000 0.00 0.00 41.45 2.01
57 58 7.654022 AAAGACAAATTGGGAGTCTGTAAAA 57.346 32.000 0.00 0.00 41.45 1.52
58 59 7.654022 AAGACAAATTGGGAGTCTGTAAAAA 57.346 32.000 0.00 0.00 41.45 1.94
59 60 7.277174 AGACAAATTGGGAGTCTGTAAAAAG 57.723 36.000 0.00 0.00 40.83 2.27
60 61 7.060421 AGACAAATTGGGAGTCTGTAAAAAGA 58.940 34.615 0.00 0.00 40.83 2.52
61 62 7.725844 AGACAAATTGGGAGTCTGTAAAAAGAT 59.274 33.333 0.00 0.00 40.83 2.40
62 63 8.250143 ACAAATTGGGAGTCTGTAAAAAGATT 57.750 30.769 0.00 0.00 0.00 2.40
63 64 8.704668 ACAAATTGGGAGTCTGTAAAAAGATTT 58.295 29.630 0.00 0.00 0.00 2.17
87 88 8.819643 TTACTGTTTATGTATTGTTTTTGCCC 57.180 30.769 0.00 0.00 0.00 5.36
88 89 5.923684 ACTGTTTATGTATTGTTTTTGCCCG 59.076 36.000 0.00 0.00 0.00 6.13
89 90 6.085555 TGTTTATGTATTGTTTTTGCCCGA 57.914 33.333 0.00 0.00 0.00 5.14
90 91 6.692486 TGTTTATGTATTGTTTTTGCCCGAT 58.308 32.000 0.00 0.00 0.00 4.18
91 92 7.155328 TGTTTATGTATTGTTTTTGCCCGATT 58.845 30.769 0.00 0.00 0.00 3.34
92 93 7.657761 TGTTTATGTATTGTTTTTGCCCGATTT 59.342 29.630 0.00 0.00 0.00 2.17
93 94 7.588143 TTATGTATTGTTTTTGCCCGATTTG 57.412 32.000 0.00 0.00 0.00 2.32
94 95 4.950050 TGTATTGTTTTTGCCCGATTTGT 58.050 34.783 0.00 0.00 0.00 2.83
95 96 4.985409 TGTATTGTTTTTGCCCGATTTGTC 59.015 37.500 0.00 0.00 0.00 3.18
96 97 3.810310 TTGTTTTTGCCCGATTTGTCT 57.190 38.095 0.00 0.00 0.00 3.41
97 98 3.810310 TGTTTTTGCCCGATTTGTCTT 57.190 38.095 0.00 0.00 0.00 3.01
98 99 4.130286 TGTTTTTGCCCGATTTGTCTTT 57.870 36.364 0.00 0.00 0.00 2.52
99 100 4.508662 TGTTTTTGCCCGATTTGTCTTTT 58.491 34.783 0.00 0.00 0.00 2.27
100 101 4.938226 TGTTTTTGCCCGATTTGTCTTTTT 59.062 33.333 0.00 0.00 0.00 1.94
114 115 4.481195 TTTTTGCCGAGAGCTGCT 57.519 50.000 0.00 0.00 44.23 4.24
115 116 2.247790 TTTTTGCCGAGAGCTGCTC 58.752 52.632 21.72 21.72 44.23 4.26
116 117 0.534877 TTTTTGCCGAGAGCTGCTCA 60.535 50.000 29.49 8.15 44.15 4.26
117 118 0.952497 TTTTGCCGAGAGCTGCTCAG 60.952 55.000 29.49 21.79 44.15 3.35
118 119 1.820010 TTTGCCGAGAGCTGCTCAGA 61.820 55.000 29.49 7.15 44.15 3.27
119 120 2.202730 GCCGAGAGCTGCTCAGAC 60.203 66.667 29.49 18.70 44.15 3.51
120 121 2.101965 CCGAGAGCTGCTCAGACG 59.898 66.667 29.49 26.83 44.15 4.18
121 122 2.695759 CCGAGAGCTGCTCAGACGT 61.696 63.158 29.49 10.20 44.15 4.34
122 123 1.226267 CGAGAGCTGCTCAGACGTC 60.226 63.158 29.49 17.18 44.15 4.34
123 124 1.138671 GAGAGCTGCTCAGACGTCC 59.861 63.158 29.49 2.47 43.38 4.79
124 125 1.590610 GAGAGCTGCTCAGACGTCCA 61.591 60.000 29.49 1.65 43.38 4.02
125 126 1.181741 AGAGCTGCTCAGACGTCCAA 61.182 55.000 29.49 0.00 32.06 3.53
126 127 0.319900 GAGCTGCTCAGACGTCCAAA 60.320 55.000 24.02 0.00 0.00 3.28
127 128 0.322975 AGCTGCTCAGACGTCCAAAT 59.677 50.000 13.01 0.00 0.00 2.32
128 129 0.445436 GCTGCTCAGACGTCCAAATG 59.555 55.000 13.01 3.85 0.00 2.32
129 130 1.941209 GCTGCTCAGACGTCCAAATGA 60.941 52.381 13.01 8.50 0.00 2.57
130 131 2.625737 CTGCTCAGACGTCCAAATGAT 58.374 47.619 13.01 0.00 0.00 2.45
131 132 3.005554 CTGCTCAGACGTCCAAATGATT 58.994 45.455 13.01 0.00 0.00 2.57
132 133 3.411446 TGCTCAGACGTCCAAATGATTT 58.589 40.909 13.01 0.00 0.00 2.17
133 134 3.189080 TGCTCAGACGTCCAAATGATTTG 59.811 43.478 13.01 10.84 40.32 2.32
134 135 3.436704 GCTCAGACGTCCAAATGATTTGA 59.563 43.478 18.82 5.07 43.26 2.69
135 136 4.083324 GCTCAGACGTCCAAATGATTTGAA 60.083 41.667 18.82 0.00 43.26 2.69
136 137 5.562696 GCTCAGACGTCCAAATGATTTGAAA 60.563 40.000 18.82 4.37 43.26 2.69
137 138 6.573664 TCAGACGTCCAAATGATTTGAAAT 57.426 33.333 18.82 2.03 43.26 2.17
138 139 6.980593 TCAGACGTCCAAATGATTTGAAATT 58.019 32.000 18.82 1.14 43.26 1.82
139 140 7.432869 TCAGACGTCCAAATGATTTGAAATTT 58.567 30.769 18.82 0.00 43.26 1.82
140 141 7.381948 TCAGACGTCCAAATGATTTGAAATTTG 59.618 33.333 18.82 9.76 43.26 2.32
146 147 6.709145 CAAATGATTTGAAATTTGGAGCGA 57.291 33.333 12.37 0.00 43.26 4.93
147 148 6.758149 CAAATGATTTGAAATTTGGAGCGAG 58.242 36.000 12.37 0.00 43.26 5.03
148 149 3.836949 TGATTTGAAATTTGGAGCGAGC 58.163 40.909 0.00 0.00 0.00 5.03
149 150 2.723124 TTTGAAATTTGGAGCGAGCC 57.277 45.000 0.00 0.00 0.00 4.70
150 151 0.887933 TTGAAATTTGGAGCGAGCCC 59.112 50.000 0.00 0.00 0.00 5.19
151 152 0.965363 TGAAATTTGGAGCGAGCCCC 60.965 55.000 0.00 0.00 0.00 5.80
152 153 0.965363 GAAATTTGGAGCGAGCCCCA 60.965 55.000 0.00 0.00 0.00 4.96
153 154 1.250840 AAATTTGGAGCGAGCCCCAC 61.251 55.000 0.00 0.00 31.11 4.61
154 155 3.976701 ATTTGGAGCGAGCCCCACG 62.977 63.158 0.00 0.00 31.11 4.94
161 162 2.745884 CGAGCCCCACGCATCAAA 60.746 61.111 0.00 0.00 41.38 2.69
162 163 2.753966 CGAGCCCCACGCATCAAAG 61.754 63.158 0.00 0.00 41.38 2.77
163 164 1.675641 GAGCCCCACGCATCAAAGT 60.676 57.895 0.00 0.00 41.38 2.66
164 165 1.228552 AGCCCCACGCATCAAAGTT 60.229 52.632 0.00 0.00 41.38 2.66
165 166 0.827507 AGCCCCACGCATCAAAGTTT 60.828 50.000 0.00 0.00 41.38 2.66
166 167 0.388520 GCCCCACGCATCAAAGTTTC 60.389 55.000 0.00 0.00 37.47 2.78
167 168 1.247567 CCCCACGCATCAAAGTTTCT 58.752 50.000 0.00 0.00 0.00 2.52
168 169 2.432444 CCCCACGCATCAAAGTTTCTA 58.568 47.619 0.00 0.00 0.00 2.10
169 170 2.161609 CCCCACGCATCAAAGTTTCTAC 59.838 50.000 0.00 0.00 0.00 2.59
170 171 2.161609 CCCACGCATCAAAGTTTCTACC 59.838 50.000 0.00 0.00 0.00 3.18
171 172 3.074412 CCACGCATCAAAGTTTCTACCT 58.926 45.455 0.00 0.00 0.00 3.08
172 173 3.125316 CCACGCATCAAAGTTTCTACCTC 59.875 47.826 0.00 0.00 0.00 3.85
173 174 3.745975 CACGCATCAAAGTTTCTACCTCA 59.254 43.478 0.00 0.00 0.00 3.86
174 175 3.746492 ACGCATCAAAGTTTCTACCTCAC 59.254 43.478 0.00 0.00 0.00 3.51
175 176 3.745975 CGCATCAAAGTTTCTACCTCACA 59.254 43.478 0.00 0.00 0.00 3.58
176 177 4.213270 CGCATCAAAGTTTCTACCTCACAA 59.787 41.667 0.00 0.00 0.00 3.33
177 178 5.106555 CGCATCAAAGTTTCTACCTCACAAT 60.107 40.000 0.00 0.00 0.00 2.71
178 179 6.568462 CGCATCAAAGTTTCTACCTCACAATT 60.568 38.462 0.00 0.00 0.00 2.32
179 180 7.147976 GCATCAAAGTTTCTACCTCACAATTT 58.852 34.615 0.00 0.00 0.00 1.82
180 181 7.653311 GCATCAAAGTTTCTACCTCACAATTTT 59.347 33.333 0.00 0.00 0.00 1.82
181 182 9.533253 CATCAAAGTTTCTACCTCACAATTTTT 57.467 29.630 0.00 0.00 0.00 1.94
232 233 6.748333 TTTTTCTAACCAGATGCAGATGAG 57.252 37.500 2.60 0.00 0.00 2.90
233 234 5.426689 TTTCTAACCAGATGCAGATGAGT 57.573 39.130 2.60 0.00 0.00 3.41
234 235 4.662468 TCTAACCAGATGCAGATGAGTC 57.338 45.455 2.60 0.00 0.00 3.36
235 236 4.285020 TCTAACCAGATGCAGATGAGTCT 58.715 43.478 2.60 0.00 34.14 3.24
244 245 2.704464 CAGATGAGTCTGGGCATCAA 57.296 50.000 0.00 0.00 46.56 2.57
245 246 2.995283 CAGATGAGTCTGGGCATCAAA 58.005 47.619 0.00 0.00 46.56 2.69
246 247 3.349927 CAGATGAGTCTGGGCATCAAAA 58.650 45.455 0.00 0.00 46.56 2.44
247 248 3.128242 CAGATGAGTCTGGGCATCAAAAC 59.872 47.826 0.00 0.00 46.56 2.43
248 249 1.522668 TGAGTCTGGGCATCAAAACG 58.477 50.000 0.00 0.00 0.00 3.60
249 250 1.202758 TGAGTCTGGGCATCAAAACGT 60.203 47.619 0.00 0.00 0.00 3.99
250 251 1.464997 GAGTCTGGGCATCAAAACGTC 59.535 52.381 0.00 0.00 0.00 4.34
251 252 0.165944 GTCTGGGCATCAAAACGTCG 59.834 55.000 0.00 0.00 0.00 5.12
252 253 1.154225 CTGGGCATCAAAACGTCGC 60.154 57.895 0.00 0.00 0.00 5.19
253 254 2.202298 GGGCATCAAAACGTCGCG 60.202 61.111 0.00 0.00 0.00 5.87
254 255 2.554272 GGCATCAAAACGTCGCGT 59.446 55.556 5.77 0.00 43.97 6.01
255 256 1.509162 GGCATCAAAACGTCGCGTC 60.509 57.895 5.77 0.00 39.99 5.19
256 257 1.509162 GCATCAAAACGTCGCGTCC 60.509 57.895 5.77 0.00 39.99 4.79
270 271 4.078516 GTCCGTTAGCGTGGCCCT 62.079 66.667 0.00 0.00 36.15 5.19
281 282 6.458210 GTTAGCGTGGCCCTATTTAGTTATA 58.542 40.000 0.00 0.00 0.00 0.98
317 318 5.952033 AGAACACGTCTACAGAAATACTCC 58.048 41.667 0.00 0.00 33.56 3.85
322 323 4.641094 ACGTCTACAGAAATACTCCCTCTG 59.359 45.833 0.00 0.00 41.93 3.35
324 325 5.125739 CGTCTACAGAAATACTCCCTCTGTT 59.874 44.000 9.05 0.00 45.85 3.16
326 327 7.482474 GTCTACAGAAATACTCCCTCTGTTAC 58.518 42.308 9.05 5.41 45.85 2.50
333 334 9.722184 AGAAATACTCCCTCTGTTACTTTTTAC 57.278 33.333 0.00 0.00 0.00 2.01
336 337 9.503399 AATACTCCCTCTGTTACTTTTTACAAG 57.497 33.333 0.00 0.00 0.00 3.16
337 338 7.133133 ACTCCCTCTGTTACTTTTTACAAGA 57.867 36.000 0.00 0.00 0.00 3.02
338 339 6.990939 ACTCCCTCTGTTACTTTTTACAAGAC 59.009 38.462 0.00 0.00 0.00 3.01
405 416 8.541234 CCTTTAAGTTACAGAGGGAGTATTTCT 58.459 37.037 0.00 0.00 0.00 2.52
417 428 6.890293 AGGGAGTATTTCTATGGACTTGTTC 58.110 40.000 0.00 0.00 0.00 3.18
431 442 6.115446 TGGACTTGTTCTTATGACCATGATC 58.885 40.000 0.00 0.00 0.00 2.92
520 533 9.653287 ACATATGAAGAAAAACGAGTGATCTAA 57.347 29.630 10.38 0.00 0.00 2.10
534 547 8.088981 ACGAGTGATCTAAACTCTAAAATGTGT 58.911 33.333 9.32 0.00 41.60 3.72
535 548 8.926710 CGAGTGATCTAAACTCTAAAATGTGTT 58.073 33.333 9.32 0.00 41.60 3.32
582 596 9.436866 TGTATAACATATGGTTAGGTGGTTAGA 57.563 33.333 7.80 0.00 44.74 2.10
585 599 7.504926 AACATATGGTTAGGTGGTTAGAAGA 57.495 36.000 7.80 0.00 38.15 2.87
592 606 6.499350 TGGTTAGGTGGTTAGAAGAACAGTAT 59.501 38.462 0.00 0.00 0.00 2.12
604 618 5.663106 AGAAGAACAGTATTATCCTCAGCCA 59.337 40.000 0.00 0.00 0.00 4.75
605 619 6.328672 AGAAGAACAGTATTATCCTCAGCCAT 59.671 38.462 0.00 0.00 0.00 4.40
607 621 5.604231 AGAACAGTATTATCCTCAGCCATCA 59.396 40.000 0.00 0.00 0.00 3.07
611 625 4.910304 AGTATTATCCTCAGCCATCAAGGT 59.090 41.667 0.00 0.00 40.61 3.50
614 628 5.708736 TTATCCTCAGCCATCAAGGTTTA 57.291 39.130 0.00 0.00 40.61 2.01
617 631 4.934356 TCCTCAGCCATCAAGGTTTAAAT 58.066 39.130 0.00 0.00 40.61 1.40
618 632 4.949856 TCCTCAGCCATCAAGGTTTAAATC 59.050 41.667 0.00 0.00 40.61 2.17
620 634 4.934356 TCAGCCATCAAGGTTTAAATCCT 58.066 39.130 0.00 0.00 40.61 3.24
628 719 0.377203 GGTTTAAATCCTGAGGCGCG 59.623 55.000 0.00 0.00 0.00 6.86
632 723 4.053295 GTTTAAATCCTGAGGCGCGTATA 58.947 43.478 8.43 0.00 0.00 1.47
646 737 3.727723 GCGCGTATAGTGACTTCGTAAAT 59.272 43.478 8.43 0.00 0.00 1.40
654 745 5.847670 AGTGACTTCGTAAATTCTCAAGC 57.152 39.130 0.00 0.00 0.00 4.01
664 756 2.502142 ATTCTCAAGCTGACATGCCA 57.498 45.000 0.00 0.00 0.00 4.92
674 766 0.248565 TGACATGCCAGCTCAGTCTC 59.751 55.000 0.00 0.00 0.00 3.36
691 783 2.946329 GTCTCTCGAAGGTGCTCATAGA 59.054 50.000 0.00 0.00 0.00 1.98
697 789 3.118000 TCGAAGGTGCTCATAGAGGTAGA 60.118 47.826 0.00 0.00 0.00 2.59
708 806 5.812286 TCATAGAGGTAGAGTGTGTGTGTA 58.188 41.667 0.00 0.00 0.00 2.90
711 809 5.646577 AGAGGTAGAGTGTGTGTGTATTC 57.353 43.478 0.00 0.00 0.00 1.75
739 855 5.545588 GGATGAGTGTATGCATGTCTGTAT 58.454 41.667 10.16 0.00 0.00 2.29
975 1203 3.003763 GGGGGAGCCTCTTCGTGT 61.004 66.667 0.00 0.00 0.00 4.49
1262 1517 2.807967 CGCAAGATCTGAACTGAACCAA 59.192 45.455 0.00 0.00 43.02 3.67
1676 1949 2.728690 TGCATCCAATGTTGCAGTTC 57.271 45.000 4.32 0.00 41.14 3.01
1770 2045 7.143340 CACTGATTTTTCATGTGACTCAATGT 58.857 34.615 0.00 0.00 0.00 2.71
1861 2136 9.638239 TTGCTTTTCTTGCTTTATATAAGGTTG 57.362 29.630 6.48 0.00 0.00 3.77
1862 2137 8.802267 TGCTTTTCTTGCTTTATATAAGGTTGT 58.198 29.630 6.48 0.00 0.00 3.32
1977 2252 3.149981 AGGATTCGAGAGATCATGCGTA 58.850 45.455 0.00 0.00 41.60 4.42
2207 2482 1.705186 AGACCCTTTGTACTGCATGGT 59.295 47.619 0.00 0.00 0.00 3.55
2303 2578 5.636837 TGTGTCAGTTTGCTTAAGAACAAC 58.363 37.500 6.67 5.30 0.00 3.32
2309 2584 5.049405 CAGTTTGCTTAAGAACAACGAGGAT 60.049 40.000 6.67 0.00 0.00 3.24
2315 2590 5.477607 TTAAGAACAACGAGGATGAGGAA 57.522 39.130 0.00 0.00 0.00 3.36
2429 2705 6.839124 TTTGAAGATATGTCAAAGGTGCAT 57.161 33.333 6.95 0.00 39.46 3.96
2477 2753 0.749649 AGCATCTGATGGACGAGGTC 59.250 55.000 18.60 0.22 0.00 3.85
2540 2816 1.063070 TCTGGGTTGGTGGGTGCTTA 61.063 55.000 0.00 0.00 0.00 3.09
2573 2849 2.038659 GTATGGCCTCTCTTGCTCTCT 58.961 52.381 3.32 0.00 0.00 3.10
2588 2881 1.287739 CTCTCTCCTTCTCCCTCCTGT 59.712 57.143 0.00 0.00 0.00 4.00
2589 2882 1.719378 TCTCTCCTTCTCCCTCCTGTT 59.281 52.381 0.00 0.00 0.00 3.16
2590 2883 1.830477 CTCTCCTTCTCCCTCCTGTTG 59.170 57.143 0.00 0.00 0.00 3.33
2591 2884 0.251634 CTCCTTCTCCCTCCTGTTGC 59.748 60.000 0.00 0.00 0.00 4.17
2592 2885 0.473694 TCCTTCTCCCTCCTGTTGCA 60.474 55.000 0.00 0.00 0.00 4.08
2593 2886 0.622665 CCTTCTCCCTCCTGTTGCAT 59.377 55.000 0.00 0.00 0.00 3.96
2594 2887 1.839994 CCTTCTCCCTCCTGTTGCATA 59.160 52.381 0.00 0.00 0.00 3.14
2595 2888 2.441001 CCTTCTCCCTCCTGTTGCATAT 59.559 50.000 0.00 0.00 0.00 1.78
2596 2889 3.648067 CCTTCTCCCTCCTGTTGCATATA 59.352 47.826 0.00 0.00 0.00 0.86
2597 2890 4.503991 CCTTCTCCCTCCTGTTGCATATAC 60.504 50.000 0.00 0.00 0.00 1.47
2598 2891 3.928754 TCTCCCTCCTGTTGCATATACT 58.071 45.455 0.00 0.00 0.00 2.12
2599 2892 3.643320 TCTCCCTCCTGTTGCATATACTG 59.357 47.826 0.00 0.00 0.00 2.74
2784 3084 7.565680 ACTTATAGTAAGCAGTTAATGTGGCT 58.434 34.615 0.00 0.00 38.45 4.75
3274 3585 5.523916 CACTCTGTAGTTTGTGTTTACAGCT 59.476 40.000 6.11 0.00 42.40 4.24
3297 3608 4.428615 ACAACGTTTTAGCAGTGTTTGT 57.571 36.364 0.00 0.00 0.00 2.83
3304 3615 7.306953 ACGTTTTAGCAGTGTTTGTTCTTTTA 58.693 30.769 0.00 0.00 0.00 1.52
3390 3701 2.873133 ACCGATACAGAAGTAGCAGC 57.127 50.000 0.00 0.00 36.44 5.25
3600 3916 9.162764 TGCTAAAGAAATGAGTACAGGTTATTC 57.837 33.333 0.00 0.00 0.00 1.75
3859 4204 6.571605 TGAATCTTCAGAGTCAGATGATCAC 58.428 40.000 12.46 10.70 43.16 3.06
4056 4569 2.431454 CTTTTCCTCCAGCCTGAGTTC 58.569 52.381 0.00 0.00 0.00 3.01
4077 4593 5.888691 TCACTTCTGTTTGTTTTGCACTA 57.111 34.783 0.00 0.00 0.00 2.74
4284 4800 0.034574 TGTGACAACCAAGTGCAGGT 60.035 50.000 0.00 0.00 42.34 4.00
4311 4827 4.377021 GACATATGCATCTTTGTACCGGA 58.623 43.478 9.46 0.00 0.00 5.14
4401 4917 2.069165 AAAAGGGTTCGCTCCAGCCT 62.069 55.000 0.00 0.00 44.35 4.58
4420 4936 0.609151 TTGATTCTCCGGTTGGCGTA 59.391 50.000 0.00 0.00 34.14 4.42
4462 4979 0.450184 CCGTTTAGGAATGGCAACCG 59.550 55.000 0.00 0.00 45.00 4.44
4596 5126 3.575506 GCAGAATGGTGGGACATGA 57.424 52.632 0.00 0.00 37.32 3.07
4644 5174 4.189231 GTTGGTACTTTGTGTGTCTCTGT 58.811 43.478 0.00 0.00 0.00 3.41
4657 5187 5.523916 GTGTGTCTCTGTGATGTTTTGTACT 59.476 40.000 0.00 0.00 0.00 2.73
4658 5188 6.700081 GTGTGTCTCTGTGATGTTTTGTACTA 59.300 38.462 0.00 0.00 0.00 1.82
4695 5225 7.555087 GCTATGGCTAACTCTCTGATCATATT 58.445 38.462 0.00 0.00 35.22 1.28
4738 5270 7.616313 TGGAAGATGCCGGTAATTTTAATTTT 58.384 30.769 1.90 0.00 0.00 1.82
4801 5333 2.564771 TGAGACTTCTTTGTGGCACAG 58.435 47.619 20.97 10.51 41.80 3.66
4804 5336 2.104792 AGACTTCTTTGTGGCACAGCTA 59.895 45.455 20.97 9.44 41.80 3.32
4841 5373 0.035458 CCTTATGGGATCTCGGTGCC 59.965 60.000 0.00 0.00 37.23 5.01
4846 5378 1.281419 TGGGATCTCGGTGCCTTTTA 58.719 50.000 0.00 0.00 0.00 1.52
4867 5399 6.558771 TTATCATTTGGAAGTGGATATGCG 57.441 37.500 0.00 0.00 0.00 4.73
4869 5401 4.129380 TCATTTGGAAGTGGATATGCGAG 58.871 43.478 0.00 0.00 0.00 5.03
4871 5403 3.459232 TTGGAAGTGGATATGCGAGAG 57.541 47.619 0.00 0.00 0.00 3.20
4872 5404 2.666317 TGGAAGTGGATATGCGAGAGA 58.334 47.619 0.00 0.00 0.00 3.10
4873 5405 2.625314 TGGAAGTGGATATGCGAGAGAG 59.375 50.000 0.00 0.00 0.00 3.20
4874 5406 2.029470 GGAAGTGGATATGCGAGAGAGG 60.029 54.545 0.00 0.00 0.00 3.69
4876 5408 2.235016 AGTGGATATGCGAGAGAGGTC 58.765 52.381 0.00 0.00 0.00 3.85
4877 5409 1.957177 GTGGATATGCGAGAGAGGTCA 59.043 52.381 0.00 0.00 0.00 4.02
4879 5411 2.822561 TGGATATGCGAGAGAGGTCATC 59.177 50.000 0.00 0.00 0.00 2.92
4881 5413 4.263506 TGGATATGCGAGAGAGGTCATCTA 60.264 45.833 0.00 0.00 38.84 1.98
4882 5414 4.887071 GGATATGCGAGAGAGGTCATCTAT 59.113 45.833 0.00 0.00 38.84 1.98
4883 5415 5.359576 GGATATGCGAGAGAGGTCATCTATT 59.640 44.000 0.00 0.00 38.84 1.73
4884 5416 3.998099 TGCGAGAGAGGTCATCTATTG 57.002 47.619 0.00 0.00 38.84 1.90
4885 5417 2.625314 TGCGAGAGAGGTCATCTATTGG 59.375 50.000 0.00 0.00 38.84 3.16
4887 5419 3.821600 GCGAGAGAGGTCATCTATTGGTA 59.178 47.826 0.00 0.00 38.84 3.25
4890 5422 5.533154 CGAGAGAGGTCATCTATTGGTAACT 59.467 44.000 0.00 0.00 38.84 2.24
4891 5423 6.711194 CGAGAGAGGTCATCTATTGGTAACTA 59.289 42.308 0.00 0.00 38.84 2.24
4892 5424 7.094975 CGAGAGAGGTCATCTATTGGTAACTAG 60.095 44.444 0.00 0.00 38.84 2.57
4893 5425 6.492087 AGAGAGGTCATCTATTGGTAACTAGC 59.508 42.308 0.00 0.00 38.84 3.42
4894 5426 6.136857 AGAGGTCATCTATTGGTAACTAGCA 58.863 40.000 0.00 0.00 36.10 3.49
4895 5427 6.611642 AGAGGTCATCTATTGGTAACTAGCAA 59.388 38.462 4.00 4.00 46.16 3.91
4896 5428 6.821388 AGGTCATCTATTGGTAACTAGCAAG 58.179 40.000 7.37 0.00 45.44 4.01
4897 5429 5.467063 GGTCATCTATTGGTAACTAGCAAGC 59.533 44.000 7.37 0.00 45.44 4.01
4898 5430 6.049149 GTCATCTATTGGTAACTAGCAAGCA 58.951 40.000 7.37 0.00 45.44 3.91
4900 5432 7.227512 GTCATCTATTGGTAACTAGCAAGCAAT 59.772 37.037 19.94 19.94 45.44 3.56
4901 5433 7.442364 TCATCTATTGGTAACTAGCAAGCAATC 59.558 37.037 19.75 0.00 45.44 2.67
4902 5434 6.889198 TCTATTGGTAACTAGCAAGCAATCT 58.111 36.000 19.75 6.82 45.44 2.40
4903 5435 5.824904 ATTGGTAACTAGCAAGCAATCTG 57.175 39.130 13.67 0.00 45.44 2.90
4904 5436 4.551702 TGGTAACTAGCAAGCAATCTGA 57.448 40.909 0.00 0.00 37.61 3.27
4905 5437 4.905429 TGGTAACTAGCAAGCAATCTGAA 58.095 39.130 0.00 0.00 37.61 3.02
4906 5438 4.695455 TGGTAACTAGCAAGCAATCTGAAC 59.305 41.667 0.00 0.00 37.61 3.18
4907 5439 4.695455 GGTAACTAGCAAGCAATCTGAACA 59.305 41.667 0.00 0.00 0.00 3.18
4908 5440 5.181245 GGTAACTAGCAAGCAATCTGAACAA 59.819 40.000 0.00 0.00 0.00 2.83
4909 5441 5.772825 AACTAGCAAGCAATCTGAACAAA 57.227 34.783 0.00 0.00 0.00 2.83
4910 5442 5.972107 ACTAGCAAGCAATCTGAACAAAT 57.028 34.783 0.00 0.00 0.00 2.32
4911 5443 5.706916 ACTAGCAAGCAATCTGAACAAATG 58.293 37.500 0.00 0.00 0.00 2.32
4912 5444 4.595762 AGCAAGCAATCTGAACAAATGT 57.404 36.364 0.00 0.00 0.00 2.71
4915 5447 4.860907 GCAAGCAATCTGAACAAATGTAGG 59.139 41.667 0.00 0.00 0.00 3.18
4916 5448 4.708726 AGCAATCTGAACAAATGTAGGC 57.291 40.909 0.00 0.00 0.00 3.93
4917 5449 4.081406 AGCAATCTGAACAAATGTAGGCA 58.919 39.130 0.00 0.00 0.00 4.75
4918 5450 4.523943 AGCAATCTGAACAAATGTAGGCAA 59.476 37.500 0.00 0.00 0.00 4.52
4919 5451 5.010922 AGCAATCTGAACAAATGTAGGCAAA 59.989 36.000 0.00 0.00 0.00 3.68
4920 5452 5.695816 GCAATCTGAACAAATGTAGGCAAAA 59.304 36.000 0.00 0.00 0.00 2.44
4921 5453 6.202570 GCAATCTGAACAAATGTAGGCAAAAA 59.797 34.615 0.00 0.00 0.00 1.94
4922 5454 7.095102 GCAATCTGAACAAATGTAGGCAAAAAT 60.095 33.333 0.00 0.00 0.00 1.82
4923 5455 9.421806 CAATCTGAACAAATGTAGGCAAAAATA 57.578 29.630 0.00 0.00 0.00 1.40
4924 5456 8.986477 ATCTGAACAAATGTAGGCAAAAATAC 57.014 30.769 0.00 0.00 0.00 1.89
4925 5457 8.177119 TCTGAACAAATGTAGGCAAAAATACT 57.823 30.769 0.00 0.00 0.00 2.12
4926 5458 9.290988 TCTGAACAAATGTAGGCAAAAATACTA 57.709 29.630 0.00 0.00 0.00 1.82
4927 5459 9.559958 CTGAACAAATGTAGGCAAAAATACTAG 57.440 33.333 0.00 0.00 0.00 2.57
4928 5460 8.026607 TGAACAAATGTAGGCAAAAATACTAGC 58.973 33.333 0.00 0.00 0.00 3.42
4929 5461 7.703058 ACAAATGTAGGCAAAAATACTAGCT 57.297 32.000 0.00 0.00 0.00 3.32
4930 5462 7.538575 ACAAATGTAGGCAAAAATACTAGCTG 58.461 34.615 0.00 0.00 0.00 4.24
4931 5463 7.176690 ACAAATGTAGGCAAAAATACTAGCTGT 59.823 33.333 0.00 0.00 0.00 4.40
4932 5464 6.683974 ATGTAGGCAAAAATACTAGCTGTG 57.316 37.500 0.00 0.00 0.00 3.66
4933 5465 5.556915 TGTAGGCAAAAATACTAGCTGTGT 58.443 37.500 0.00 0.00 0.00 3.72
4934 5466 6.001460 TGTAGGCAAAAATACTAGCTGTGTT 58.999 36.000 0.00 0.00 0.00 3.32
4935 5467 7.162761 TGTAGGCAAAAATACTAGCTGTGTTA 58.837 34.615 0.00 0.00 29.71 2.41
4936 5468 7.827236 TGTAGGCAAAAATACTAGCTGTGTTAT 59.173 33.333 0.00 0.00 29.71 1.89
4937 5469 9.321562 GTAGGCAAAAATACTAGCTGTGTTATA 57.678 33.333 0.00 0.00 29.71 0.98
4938 5470 8.209917 AGGCAAAAATACTAGCTGTGTTATAC 57.790 34.615 0.00 0.00 29.71 1.47
4939 5471 8.047310 AGGCAAAAATACTAGCTGTGTTATACT 58.953 33.333 0.00 0.00 29.71 2.12
4940 5472 9.321562 GGCAAAAATACTAGCTGTGTTATACTA 57.678 33.333 0.00 0.00 29.71 1.82
4954 5486 8.712285 TGTGTTATACTAGATTGTTTAGTGGC 57.288 34.615 0.00 0.00 33.60 5.01
4959 5491 1.024579 AGATTGTTTAGTGGCGCGGG 61.025 55.000 8.83 0.00 0.00 6.13
4986 5518 4.156922 CAGATTTGCCGGTATTGTTGGTAA 59.843 41.667 1.90 0.00 0.00 2.85
4990 5522 5.470047 TTGCCGGTATTGTTGGTAAAATT 57.530 34.783 1.90 0.00 0.00 1.82
5095 5640 6.874134 TGTAACAGACTAGAGCTTGAAATTCC 59.126 38.462 0.00 0.00 0.00 3.01
5227 5777 5.980116 CCTCTACAGGAGATCAAAATGTACG 59.020 44.000 0.00 0.00 43.65 3.67
5251 5801 6.128849 CGGTGCTAAAATGAATTTTCCTGTTG 60.129 38.462 4.34 0.00 40.24 3.33
5293 5844 7.801716 TTTCTGTGCTAAAATACTTCACTGT 57.198 32.000 0.00 0.00 0.00 3.55
5418 5970 4.889832 AAACAGAGTGCTTCTTCAAGTG 57.110 40.909 0.00 0.00 32.41 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.288560 AGATCTGCTTAGATGTCCAAATGATT 58.711 34.615 0.00 0.00 0.00 2.57
1 2 6.839454 AGATCTGCTTAGATGTCCAAATGAT 58.161 36.000 0.00 0.00 0.00 2.45
2 3 6.244552 AGATCTGCTTAGATGTCCAAATGA 57.755 37.500 0.00 0.00 0.00 2.57
3 4 5.177142 CGAGATCTGCTTAGATGTCCAAATG 59.823 44.000 0.00 0.00 35.82 2.32
4 5 5.295950 CGAGATCTGCTTAGATGTCCAAAT 58.704 41.667 0.00 0.00 35.82 2.32
5 6 4.442052 CCGAGATCTGCTTAGATGTCCAAA 60.442 45.833 0.00 0.00 35.82 3.28
6 7 3.068732 CCGAGATCTGCTTAGATGTCCAA 59.931 47.826 0.00 0.00 35.82 3.53
7 8 2.625314 CCGAGATCTGCTTAGATGTCCA 59.375 50.000 0.00 0.00 35.82 4.02
8 9 2.609244 GCCGAGATCTGCTTAGATGTCC 60.609 54.545 0.00 0.00 35.82 4.02
9 10 2.035193 TGCCGAGATCTGCTTAGATGTC 59.965 50.000 0.00 4.80 35.86 3.06
10 11 2.034878 TGCCGAGATCTGCTTAGATGT 58.965 47.619 0.00 0.00 0.00 3.06
11 12 2.808523 TGCCGAGATCTGCTTAGATG 57.191 50.000 0.00 0.00 0.00 2.90
12 13 3.827008 TTTGCCGAGATCTGCTTAGAT 57.173 42.857 0.00 0.00 0.00 1.98
13 14 3.610040 TTTTGCCGAGATCTGCTTAGA 57.390 42.857 0.00 0.00 0.00 2.10
31 32 7.654022 TTACAGACTCCCAATTTGTCTTTTT 57.346 32.000 0.00 0.00 38.80 1.94
32 33 7.654022 TTTACAGACTCCCAATTTGTCTTTT 57.346 32.000 0.00 0.00 38.80 2.27
33 34 7.654022 TTTTACAGACTCCCAATTTGTCTTT 57.346 32.000 0.00 0.00 38.80 2.52
34 35 7.559897 TCTTTTTACAGACTCCCAATTTGTCTT 59.440 33.333 0.00 0.00 38.80 3.01
35 36 7.060421 TCTTTTTACAGACTCCCAATTTGTCT 58.940 34.615 0.00 0.00 41.15 3.41
36 37 7.272037 TCTTTTTACAGACTCCCAATTTGTC 57.728 36.000 0.00 0.00 0.00 3.18
37 38 7.839680 ATCTTTTTACAGACTCCCAATTTGT 57.160 32.000 0.00 0.00 0.00 2.83
40 41 9.588096 AGTAAATCTTTTTACAGACTCCCAATT 57.412 29.630 10.30 0.00 46.37 2.32
41 42 9.014297 CAGTAAATCTTTTTACAGACTCCCAAT 57.986 33.333 10.30 0.00 46.37 3.16
42 43 7.996644 ACAGTAAATCTTTTTACAGACTCCCAA 59.003 33.333 10.30 0.00 46.37 4.12
43 44 7.514721 ACAGTAAATCTTTTTACAGACTCCCA 58.485 34.615 10.30 0.00 46.37 4.37
44 45 7.981102 ACAGTAAATCTTTTTACAGACTCCC 57.019 36.000 10.30 0.00 46.37 4.30
61 62 9.262358 GGGCAAAAACAATACATAAACAGTAAA 57.738 29.630 0.00 0.00 0.00 2.01
62 63 7.595502 CGGGCAAAAACAATACATAAACAGTAA 59.404 33.333 0.00 0.00 0.00 2.24
63 64 7.040617 TCGGGCAAAAACAATACATAAACAGTA 60.041 33.333 0.00 0.00 0.00 2.74
64 65 5.923684 CGGGCAAAAACAATACATAAACAGT 59.076 36.000 0.00 0.00 0.00 3.55
65 66 6.153067 TCGGGCAAAAACAATACATAAACAG 58.847 36.000 0.00 0.00 0.00 3.16
66 67 6.085555 TCGGGCAAAAACAATACATAAACA 57.914 33.333 0.00 0.00 0.00 2.83
67 68 7.589574 AATCGGGCAAAAACAATACATAAAC 57.410 32.000 0.00 0.00 0.00 2.01
68 69 7.657761 ACAAATCGGGCAAAAACAATACATAAA 59.342 29.630 0.00 0.00 0.00 1.40
69 70 7.155328 ACAAATCGGGCAAAAACAATACATAA 58.845 30.769 0.00 0.00 0.00 1.90
70 71 6.692486 ACAAATCGGGCAAAAACAATACATA 58.308 32.000 0.00 0.00 0.00 2.29
71 72 5.546526 ACAAATCGGGCAAAAACAATACAT 58.453 33.333 0.00 0.00 0.00 2.29
72 73 4.950050 ACAAATCGGGCAAAAACAATACA 58.050 34.783 0.00 0.00 0.00 2.29
73 74 5.227152 AGACAAATCGGGCAAAAACAATAC 58.773 37.500 0.00 0.00 0.00 1.89
74 75 5.461032 AGACAAATCGGGCAAAAACAATA 57.539 34.783 0.00 0.00 0.00 1.90
75 76 4.335400 AGACAAATCGGGCAAAAACAAT 57.665 36.364 0.00 0.00 0.00 2.71
76 77 3.810310 AGACAAATCGGGCAAAAACAA 57.190 38.095 0.00 0.00 0.00 2.83
77 78 3.810310 AAGACAAATCGGGCAAAAACA 57.190 38.095 0.00 0.00 0.00 2.83
78 79 5.478233 AAAAAGACAAATCGGGCAAAAAC 57.522 34.783 0.00 0.00 0.00 2.43
97 98 0.534877 TGAGCAGCTCTCGGCAAAAA 60.535 50.000 23.15 0.00 44.86 1.94
98 99 0.952497 CTGAGCAGCTCTCGGCAAAA 60.952 55.000 23.15 0.00 44.86 2.44
99 100 1.375140 CTGAGCAGCTCTCGGCAAA 60.375 57.895 23.15 0.00 44.86 3.68
100 101 2.263852 CTGAGCAGCTCTCGGCAA 59.736 61.111 23.15 0.68 44.86 4.52
101 102 2.677875 TCTGAGCAGCTCTCGGCA 60.678 61.111 23.15 2.15 45.76 5.69
102 103 2.202730 GTCTGAGCAGCTCTCGGC 60.203 66.667 23.15 11.98 45.76 5.54
104 105 1.226267 GACGTCTGAGCAGCTCTCG 60.226 63.158 23.15 23.19 44.86 4.04
105 106 1.138671 GGACGTCTGAGCAGCTCTC 59.861 63.158 23.15 11.57 42.23 3.20
106 107 1.181741 TTGGACGTCTGAGCAGCTCT 61.182 55.000 23.15 2.04 0.00 4.09
107 108 0.319900 TTTGGACGTCTGAGCAGCTC 60.320 55.000 16.21 16.21 0.00 4.09
108 109 0.322975 ATTTGGACGTCTGAGCAGCT 59.677 50.000 16.46 0.00 0.00 4.24
109 110 0.445436 CATTTGGACGTCTGAGCAGC 59.555 55.000 16.46 0.00 0.00 5.25
110 111 2.084610 TCATTTGGACGTCTGAGCAG 57.915 50.000 16.46 2.00 0.00 4.24
111 112 2.768253 ATCATTTGGACGTCTGAGCA 57.232 45.000 16.46 1.36 0.00 4.26
112 113 3.436704 TCAAATCATTTGGACGTCTGAGC 59.563 43.478 16.46 0.00 40.98 4.26
113 114 5.611796 TTCAAATCATTTGGACGTCTGAG 57.388 39.130 16.46 1.80 40.98 3.35
114 115 6.573664 ATTTCAAATCATTTGGACGTCTGA 57.426 33.333 16.46 11.55 40.98 3.27
115 116 7.503991 CAAATTTCAAATCATTTGGACGTCTG 58.496 34.615 16.46 5.82 40.98 3.51
116 117 7.642071 CAAATTTCAAATCATTTGGACGTCT 57.358 32.000 16.46 0.00 40.98 4.18
123 124 6.671402 GCTCGCTCCAAATTTCAAATCATTTG 60.671 38.462 3.46 3.46 39.25 2.32
124 125 5.349543 GCTCGCTCCAAATTTCAAATCATTT 59.650 36.000 0.00 0.00 0.00 2.32
125 126 4.866486 GCTCGCTCCAAATTTCAAATCATT 59.134 37.500 0.00 0.00 0.00 2.57
126 127 4.427312 GCTCGCTCCAAATTTCAAATCAT 58.573 39.130 0.00 0.00 0.00 2.45
127 128 3.367292 GGCTCGCTCCAAATTTCAAATCA 60.367 43.478 0.00 0.00 0.00 2.57
128 129 3.182182 GGCTCGCTCCAAATTTCAAATC 58.818 45.455 0.00 0.00 0.00 2.17
129 130 2.094026 GGGCTCGCTCCAAATTTCAAAT 60.094 45.455 0.00 0.00 0.00 2.32
130 131 1.272212 GGGCTCGCTCCAAATTTCAAA 59.728 47.619 0.00 0.00 0.00 2.69
131 132 0.887933 GGGCTCGCTCCAAATTTCAA 59.112 50.000 0.00 0.00 0.00 2.69
132 133 0.965363 GGGGCTCGCTCCAAATTTCA 60.965 55.000 2.19 0.00 36.36 2.69
133 134 0.965363 TGGGGCTCGCTCCAAATTTC 60.965 55.000 8.31 0.00 44.87 2.17
134 135 1.076549 TGGGGCTCGCTCCAAATTT 59.923 52.632 8.31 0.00 44.87 1.82
135 136 2.763215 TGGGGCTCGCTCCAAATT 59.237 55.556 8.31 0.00 44.87 1.82
144 145 2.745884 TTTGATGCGTGGGGCTCG 60.746 61.111 0.00 0.00 44.05 5.03
145 146 1.244019 AACTTTGATGCGTGGGGCTC 61.244 55.000 0.00 0.00 44.05 4.70
146 147 0.827507 AAACTTTGATGCGTGGGGCT 60.828 50.000 0.00 0.00 44.05 5.19
147 148 0.388520 GAAACTTTGATGCGTGGGGC 60.389 55.000 0.00 0.00 43.96 5.80
148 149 1.247567 AGAAACTTTGATGCGTGGGG 58.752 50.000 0.00 0.00 0.00 4.96
149 150 2.161609 GGTAGAAACTTTGATGCGTGGG 59.838 50.000 0.00 0.00 0.00 4.61
150 151 3.074412 AGGTAGAAACTTTGATGCGTGG 58.926 45.455 0.00 0.00 0.00 4.94
151 152 3.745975 TGAGGTAGAAACTTTGATGCGTG 59.254 43.478 0.00 0.00 0.00 5.34
152 153 3.746492 GTGAGGTAGAAACTTTGATGCGT 59.254 43.478 0.00 0.00 0.00 5.24
153 154 3.745975 TGTGAGGTAGAAACTTTGATGCG 59.254 43.478 0.00 0.00 0.00 4.73
154 155 5.689383 TTGTGAGGTAGAAACTTTGATGC 57.311 39.130 0.00 0.00 0.00 3.91
155 156 9.533253 AAAAATTGTGAGGTAGAAACTTTGATG 57.467 29.630 0.00 0.00 0.00 3.07
209 210 6.240894 ACTCATCTGCATCTGGTTAGAAAAA 58.759 36.000 0.00 0.00 36.32 1.94
210 211 5.809001 ACTCATCTGCATCTGGTTAGAAAA 58.191 37.500 0.00 0.00 36.32 2.29
211 212 5.188555 AGACTCATCTGCATCTGGTTAGAAA 59.811 40.000 0.00 0.00 32.84 2.52
212 213 4.713814 AGACTCATCTGCATCTGGTTAGAA 59.286 41.667 0.00 0.00 32.84 2.10
213 214 4.099113 CAGACTCATCTGCATCTGGTTAGA 59.901 45.833 5.06 0.00 45.83 2.10
214 215 4.370049 CAGACTCATCTGCATCTGGTTAG 58.630 47.826 5.06 0.00 45.83 2.34
215 216 4.397481 CAGACTCATCTGCATCTGGTTA 57.603 45.455 5.06 0.00 45.83 2.85
216 217 3.263489 CAGACTCATCTGCATCTGGTT 57.737 47.619 5.06 0.00 45.83 3.67
217 218 2.983907 CAGACTCATCTGCATCTGGT 57.016 50.000 5.06 0.00 45.83 4.00
226 227 3.350833 GTTTTGATGCCCAGACTCATCT 58.649 45.455 4.73 0.00 39.69 2.90
227 228 2.096496 CGTTTTGATGCCCAGACTCATC 59.904 50.000 0.00 0.00 39.49 2.92
228 229 2.086869 CGTTTTGATGCCCAGACTCAT 58.913 47.619 0.00 0.00 0.00 2.90
229 230 1.202758 ACGTTTTGATGCCCAGACTCA 60.203 47.619 0.00 0.00 0.00 3.41
230 231 1.464997 GACGTTTTGATGCCCAGACTC 59.535 52.381 0.00 0.00 0.00 3.36
231 232 1.523758 GACGTTTTGATGCCCAGACT 58.476 50.000 0.00 0.00 0.00 3.24
232 233 0.165944 CGACGTTTTGATGCCCAGAC 59.834 55.000 0.00 0.00 0.00 3.51
233 234 1.573829 GCGACGTTTTGATGCCCAGA 61.574 55.000 0.00 0.00 0.00 3.86
234 235 1.154225 GCGACGTTTTGATGCCCAG 60.154 57.895 0.00 0.00 0.00 4.45
235 236 2.950673 GCGACGTTTTGATGCCCA 59.049 55.556 0.00 0.00 0.00 5.36
236 237 2.202298 CGCGACGTTTTGATGCCC 60.202 61.111 0.00 0.00 0.00 5.36
237 238 1.509162 GACGCGACGTTTTGATGCC 60.509 57.895 15.93 0.00 41.37 4.40
238 239 1.509162 GGACGCGACGTTTTGATGC 60.509 57.895 15.93 0.00 41.37 3.91
239 240 1.225368 CGGACGCGACGTTTTGATG 60.225 57.895 15.93 0.00 41.37 3.07
240 241 1.662446 ACGGACGCGACGTTTTGAT 60.662 52.632 23.14 4.64 42.70 2.57
241 242 2.278726 ACGGACGCGACGTTTTGA 60.279 55.556 23.14 0.00 42.70 2.69
253 254 2.024590 ATAGGGCCACGCTAACGGAC 62.025 60.000 6.18 0.00 46.04 4.79
254 255 1.332144 AATAGGGCCACGCTAACGGA 61.332 55.000 6.18 0.00 46.04 4.69
255 256 0.463116 AAATAGGGCCACGCTAACGG 60.463 55.000 6.18 0.00 46.04 4.44
289 290 8.737175 AGTATTTCTGTAGACGTGTTCTTATCA 58.263 33.333 0.00 0.00 35.55 2.15
309 310 9.856162 TTGTAAAAAGTAACAGAGGGAGTATTT 57.144 29.630 0.00 0.00 0.00 1.40
317 318 6.839820 ACGTCTTGTAAAAAGTAACAGAGG 57.160 37.500 0.00 0.00 0.00 3.69
326 327 9.931210 ATGAACTCTAAAACGTCTTGTAAAAAG 57.069 29.630 0.00 0.00 0.00 2.27
333 334 8.376203 CACTATCATGAACTCTAAAACGTCTTG 58.624 37.037 0.00 0.00 0.00 3.02
336 337 7.541091 TGACACTATCATGAACTCTAAAACGTC 59.459 37.037 0.00 0.00 29.99 4.34
337 338 7.375834 TGACACTATCATGAACTCTAAAACGT 58.624 34.615 0.00 0.00 29.99 3.99
338 339 7.812309 TGACACTATCATGAACTCTAAAACG 57.188 36.000 0.00 0.00 29.99 3.60
393 404 6.674419 AGAACAAGTCCATAGAAATACTCCCT 59.326 38.462 0.00 0.00 0.00 4.20
394 405 6.890293 AGAACAAGTCCATAGAAATACTCCC 58.110 40.000 0.00 0.00 0.00 4.30
405 416 7.194112 TCATGGTCATAAGAACAAGTCCATA 57.806 36.000 0.00 0.00 46.26 2.74
406 417 6.065976 TCATGGTCATAAGAACAAGTCCAT 57.934 37.500 0.00 0.00 46.26 3.41
447 459 9.715119 AAAAGCTTATATTTAGGAATGAAGGGT 57.285 29.630 0.00 0.00 0.00 4.34
509 521 8.467402 ACACATTTTAGAGTTTAGATCACTCG 57.533 34.615 6.14 0.00 44.73 4.18
562 576 7.037873 TGTTCTTCTAACCACCTAACCATATGT 60.038 37.037 1.24 0.00 0.00 2.29
566 580 5.309806 ACTGTTCTTCTAACCACCTAACCAT 59.690 40.000 0.00 0.00 0.00 3.55
572 586 7.624077 AGGATAATACTGTTCTTCTAACCACCT 59.376 37.037 0.00 0.00 0.00 4.00
576 590 7.654116 GCTGAGGATAATACTGTTCTTCTAACC 59.346 40.741 0.00 0.00 0.00 2.85
582 596 5.957771 TGGCTGAGGATAATACTGTTCTT 57.042 39.130 0.00 0.00 0.00 2.52
585 599 5.894298 TGATGGCTGAGGATAATACTGTT 57.106 39.130 0.00 0.00 0.00 3.16
592 606 4.591321 AAACCTTGATGGCTGAGGATAA 57.409 40.909 0.00 0.00 40.22 1.75
596 610 4.098501 GGATTTAAACCTTGATGGCTGAGG 59.901 45.833 0.00 0.00 40.22 3.86
604 618 3.947834 CGCCTCAGGATTTAAACCTTGAT 59.052 43.478 0.00 0.00 35.35 2.57
605 619 3.343617 CGCCTCAGGATTTAAACCTTGA 58.656 45.455 0.00 0.97 35.35 3.02
607 621 2.092323 GCGCCTCAGGATTTAAACCTT 58.908 47.619 0.00 0.00 35.35 3.50
611 625 2.676632 TACGCGCCTCAGGATTTAAA 57.323 45.000 5.73 0.00 0.00 1.52
614 628 1.687123 ACTATACGCGCCTCAGGATTT 59.313 47.619 5.73 0.00 0.00 2.17
617 631 0.464916 TCACTATACGCGCCTCAGGA 60.465 55.000 5.73 0.00 0.00 3.86
618 632 0.317938 GTCACTATACGCGCCTCAGG 60.318 60.000 5.73 0.00 0.00 3.86
620 634 1.065102 GAAGTCACTATACGCGCCTCA 59.935 52.381 5.73 0.00 0.00 3.86
628 719 8.533153 GCTTGAGAATTTACGAAGTCACTATAC 58.467 37.037 0.00 0.00 43.93 1.47
632 723 5.406780 CAGCTTGAGAATTTACGAAGTCACT 59.593 40.000 0.00 0.00 43.93 3.41
646 737 1.817357 CTGGCATGTCAGCTTGAGAA 58.183 50.000 15.56 0.00 34.17 2.87
654 745 0.249676 AGACTGAGCTGGCATGTCAG 59.750 55.000 23.17 23.17 42.91 3.51
664 756 1.173043 CACCTTCGAGAGACTGAGCT 58.827 55.000 0.00 0.00 41.84 4.09
674 766 2.028130 ACCTCTATGAGCACCTTCGAG 58.972 52.381 0.00 0.00 0.00 4.04
691 783 5.135508 GTGAATACACACACACTCTACCT 57.864 43.478 0.00 0.00 45.32 3.08
708 806 3.198068 GCATACACTCATCCGTGTGAAT 58.802 45.455 6.82 0.00 46.77 2.57
711 809 2.008752 TGCATACACTCATCCGTGTG 57.991 50.000 6.82 0.00 46.77 3.82
715 813 2.798847 CAGACATGCATACACTCATCCG 59.201 50.000 0.00 0.00 0.00 4.18
750 866 4.954089 AGAAGTACTCTCCCTCTGGATTT 58.046 43.478 0.00 0.00 40.80 2.17
751 867 4.618378 AGAAGTACTCTCCCTCTGGATT 57.382 45.455 0.00 0.00 40.80 3.01
753 869 4.540906 AGTAAGAAGTACTCTCCCTCTGGA 59.459 45.833 0.00 0.00 38.84 3.86
754 870 4.862371 AGTAAGAAGTACTCTCCCTCTGG 58.138 47.826 0.00 0.00 38.84 3.86
965 1193 2.320587 GCAGTGCCACACGAAGAGG 61.321 63.158 2.85 0.00 39.64 3.69
1162 1390 6.183360 GCAAAGGGGAAAAGAAAGAAACTTTG 60.183 38.462 0.00 0.00 42.88 2.77
1262 1517 6.708285 AGGTGTATTTCCTCGTGATTTTAGT 58.292 36.000 0.00 0.00 0.00 2.24
1502 1757 0.248949 GACCGGCGATGACTAAGACC 60.249 60.000 9.30 0.00 0.00 3.85
1548 1806 5.529800 ACAATGGTGGTGTTGACTAACTTAC 59.470 40.000 0.00 0.00 37.68 2.34
1694 1967 8.038944 TGACTAACATACCCTACTGCTTTTAAG 58.961 37.037 0.00 0.00 0.00 1.85
1770 2045 6.468543 TGTACCATAACTAACTGCAACATGA 58.531 36.000 0.00 0.00 0.00 3.07
1861 2136 8.925700 CCCTATAATCAAGAAACAAGCAAAAAC 58.074 33.333 0.00 0.00 0.00 2.43
1862 2137 8.093927 CCCCTATAATCAAGAAACAAGCAAAAA 58.906 33.333 0.00 0.00 0.00 1.94
1977 2252 3.314331 CTGCCGGGGTGTCAGACT 61.314 66.667 2.18 0.00 0.00 3.24
2207 2482 5.364778 TCTTTGATTTTGTCCGACTTCTGA 58.635 37.500 0.00 0.00 0.00 3.27
2429 2705 3.160585 CCTGCCCAGTCAAGGTCA 58.839 61.111 0.00 0.00 0.00 4.02
2477 2753 7.829211 TCCCTAGATTTGTACTGAAATTTCTGG 59.171 37.037 23.81 16.40 0.00 3.86
2540 2816 0.676782 GCCATACCGTGAGCAAAGGT 60.677 55.000 2.81 2.81 41.73 3.50
2573 2849 0.473694 TGCAACAGGAGGGAGAAGGA 60.474 55.000 0.00 0.00 0.00 3.36
2591 2884 8.999220 AAGACATATCATCAGTGCAGTATATG 57.001 34.615 15.80 15.80 34.81 1.78
2592 2885 9.433153 CAAAGACATATCATCAGTGCAGTATAT 57.567 33.333 0.00 0.00 0.00 0.86
2593 2886 8.641541 TCAAAGACATATCATCAGTGCAGTATA 58.358 33.333 0.00 0.00 0.00 1.47
2594 2887 7.503549 TCAAAGACATATCATCAGTGCAGTAT 58.496 34.615 0.00 0.00 0.00 2.12
2595 2888 6.877236 TCAAAGACATATCATCAGTGCAGTA 58.123 36.000 0.00 0.00 0.00 2.74
2596 2889 5.737860 TCAAAGACATATCATCAGTGCAGT 58.262 37.500 0.00 0.00 0.00 4.40
2597 2890 6.260271 ACATCAAAGACATATCATCAGTGCAG 59.740 38.462 0.00 0.00 0.00 4.41
2598 2891 6.117488 ACATCAAAGACATATCATCAGTGCA 58.883 36.000 0.00 0.00 0.00 4.57
2599 2892 6.615264 ACATCAAAGACATATCATCAGTGC 57.385 37.500 0.00 0.00 0.00 4.40
2600 2893 6.910972 GCAACATCAAAGACATATCATCAGTG 59.089 38.462 0.00 0.00 0.00 3.66
2601 2894 6.827251 AGCAACATCAAAGACATATCATCAGT 59.173 34.615 0.00 0.00 0.00 3.41
2602 2895 7.132863 CAGCAACATCAAAGACATATCATCAG 58.867 38.462 0.00 0.00 0.00 2.90
2603 2896 6.459161 GCAGCAACATCAAAGACATATCATCA 60.459 38.462 0.00 0.00 0.00 3.07
2604 2897 5.913514 GCAGCAACATCAAAGACATATCATC 59.086 40.000 0.00 0.00 0.00 2.92
2609 2902 3.441222 CCAGCAGCAACATCAAAGACATA 59.559 43.478 0.00 0.00 0.00 2.29
2701 2999 5.342433 TCAACAAAATCAAACAGACTGCAG 58.658 37.500 13.48 13.48 0.00 4.41
2784 3084 6.449635 AATTGCCAACGCTAAAATCAGATA 57.550 33.333 0.00 0.00 35.36 1.98
2979 3279 2.094234 GTGAAACAAAAGGTGGCACTGT 60.094 45.455 18.45 11.00 36.32 3.55
3060 3362 1.086696 CCAAGTGGTCCATGTAAGCG 58.913 55.000 0.00 0.00 0.00 4.68
3274 3585 5.940595 ACAAACACTGCTAAAACGTTGTAA 58.059 33.333 0.00 0.00 0.00 2.41
3390 3701 6.234723 TCGAGAGAATACGAAGATCATCTG 57.765 41.667 0.00 0.00 37.03 2.90
3600 3916 5.618236 TCATGGAGCTCCTTGAAATATGAG 58.382 41.667 36.61 16.56 44.21 2.90
3859 4204 2.266055 GCTTCTGGAGGTGTCGGG 59.734 66.667 0.00 0.00 0.00 5.14
4056 4569 5.861251 TGTTAGTGCAAAACAAACAGAAGTG 59.139 36.000 12.23 0.00 34.04 3.16
4077 4593 2.885135 TGTGGGCAAGATGAGATGTT 57.115 45.000 0.00 0.00 0.00 2.71
4284 4800 1.948834 CAAAGATGCATATGTCGCCCA 59.051 47.619 0.00 0.00 0.00 5.36
4311 4827 0.190069 GGACCTTTCCCCACCCTTTT 59.810 55.000 0.00 0.00 35.57 2.27
4333 4849 4.271533 GCACGAATTATATGGACCGTGAAA 59.728 41.667 19.40 0.00 46.87 2.69
4401 4917 0.609151 TACGCCAACCGGAGAATCAA 59.391 50.000 9.46 0.00 42.52 2.57
4462 4979 0.313043 CCATTTGCGAGCATCCATCC 59.687 55.000 0.00 0.00 0.00 3.51
4596 5126 2.503061 CATGCGGGTGCTAGCTCT 59.497 61.111 17.23 0.00 43.34 4.09
4738 5270 1.065401 CAAAGCTGCCACGAAACTTCA 59.935 47.619 0.00 0.00 0.00 3.02
4801 5333 2.029838 ACCAGCATAACACAGCTAGC 57.970 50.000 6.62 6.62 39.50 3.42
4804 5336 1.909302 AGGTACCAGCATAACACAGCT 59.091 47.619 15.94 0.00 42.94 4.24
4808 5340 4.134563 CCCATAAGGTACCAGCATAACAC 58.865 47.826 15.94 0.00 0.00 3.32
4813 5345 3.584848 GAGATCCCATAAGGTACCAGCAT 59.415 47.826 15.94 0.54 36.75 3.79
4818 5350 2.299297 CACCGAGATCCCATAAGGTACC 59.701 54.545 2.73 2.73 36.75 3.34
4841 5373 7.592533 CGCATATCCACTTCCAAATGATAAAAG 59.407 37.037 0.00 0.00 0.00 2.27
4846 5378 4.717877 TCGCATATCCACTTCCAAATGAT 58.282 39.130 0.00 0.00 0.00 2.45
4867 5399 6.969993 AGTTACCAATAGATGACCTCTCTC 57.030 41.667 0.00 0.00 35.28 3.20
4869 5401 6.265649 TGCTAGTTACCAATAGATGACCTCTC 59.734 42.308 0.00 0.00 35.28 3.20
4871 5403 6.406692 TGCTAGTTACCAATAGATGACCTC 57.593 41.667 0.00 0.00 0.00 3.85
4872 5404 6.686632 GCTTGCTAGTTACCAATAGATGACCT 60.687 42.308 0.00 0.00 0.00 3.85
4873 5405 5.467063 GCTTGCTAGTTACCAATAGATGACC 59.533 44.000 0.00 0.00 0.00 4.02
4874 5406 6.049149 TGCTTGCTAGTTACCAATAGATGAC 58.951 40.000 0.00 0.00 0.00 3.06
4876 5408 6.925610 TTGCTTGCTAGTTACCAATAGATG 57.074 37.500 0.00 0.00 0.00 2.90
4877 5409 7.443575 CAGATTGCTTGCTAGTTACCAATAGAT 59.556 37.037 0.00 0.00 0.00 1.98
4879 5411 6.763135 TCAGATTGCTTGCTAGTTACCAATAG 59.237 38.462 0.00 0.00 0.00 1.73
4881 5413 5.500234 TCAGATTGCTTGCTAGTTACCAAT 58.500 37.500 0.00 0.00 0.00 3.16
4882 5414 4.905429 TCAGATTGCTTGCTAGTTACCAA 58.095 39.130 0.00 0.00 0.00 3.67
4883 5415 4.551702 TCAGATTGCTTGCTAGTTACCA 57.448 40.909 0.00 0.00 0.00 3.25
4884 5416 4.695455 TGTTCAGATTGCTTGCTAGTTACC 59.305 41.667 0.00 0.00 0.00 2.85
4885 5417 5.862924 TGTTCAGATTGCTTGCTAGTTAC 57.137 39.130 0.00 0.00 0.00 2.50
4887 5419 5.772825 TTTGTTCAGATTGCTTGCTAGTT 57.227 34.783 0.00 0.00 0.00 2.24
4890 5422 5.710513 ACATTTGTTCAGATTGCTTGCTA 57.289 34.783 0.00 0.00 0.00 3.49
4891 5423 4.595762 ACATTTGTTCAGATTGCTTGCT 57.404 36.364 0.00 0.00 0.00 3.91
4892 5424 4.860907 CCTACATTTGTTCAGATTGCTTGC 59.139 41.667 0.00 0.00 0.00 4.01
4893 5425 4.860907 GCCTACATTTGTTCAGATTGCTTG 59.139 41.667 0.00 0.00 0.00 4.01
4894 5426 4.523943 TGCCTACATTTGTTCAGATTGCTT 59.476 37.500 0.00 0.00 0.00 3.91
4895 5427 4.081406 TGCCTACATTTGTTCAGATTGCT 58.919 39.130 0.00 0.00 0.00 3.91
4896 5428 4.439305 TGCCTACATTTGTTCAGATTGC 57.561 40.909 0.00 0.00 0.00 3.56
4897 5429 7.712264 TTTTTGCCTACATTTGTTCAGATTG 57.288 32.000 0.00 0.00 0.00 2.67
4898 5430 9.423061 GTATTTTTGCCTACATTTGTTCAGATT 57.577 29.630 0.00 0.00 0.00 2.40
4900 5432 8.177119 AGTATTTTTGCCTACATTTGTTCAGA 57.823 30.769 0.00 0.00 0.00 3.27
4901 5433 9.559958 CTAGTATTTTTGCCTACATTTGTTCAG 57.440 33.333 0.00 0.00 0.00 3.02
4902 5434 8.026607 GCTAGTATTTTTGCCTACATTTGTTCA 58.973 33.333 0.00 0.00 0.00 3.18
4903 5435 8.244113 AGCTAGTATTTTTGCCTACATTTGTTC 58.756 33.333 0.00 0.00 0.00 3.18
4904 5436 8.028938 CAGCTAGTATTTTTGCCTACATTTGTT 58.971 33.333 0.00 0.00 0.00 2.83
4905 5437 7.176690 ACAGCTAGTATTTTTGCCTACATTTGT 59.823 33.333 0.00 0.00 0.00 2.83
4906 5438 7.485913 CACAGCTAGTATTTTTGCCTACATTTG 59.514 37.037 0.00 0.00 0.00 2.32
4907 5439 7.176690 ACACAGCTAGTATTTTTGCCTACATTT 59.823 33.333 0.00 0.00 0.00 2.32
4908 5440 6.659242 ACACAGCTAGTATTTTTGCCTACATT 59.341 34.615 0.00 0.00 0.00 2.71
4909 5441 6.180472 ACACAGCTAGTATTTTTGCCTACAT 58.820 36.000 0.00 0.00 0.00 2.29
4910 5442 5.556915 ACACAGCTAGTATTTTTGCCTACA 58.443 37.500 0.00 0.00 0.00 2.74
4911 5443 6.496338 AACACAGCTAGTATTTTTGCCTAC 57.504 37.500 0.00 0.00 0.00 3.18
4912 5444 9.321562 GTATAACACAGCTAGTATTTTTGCCTA 57.678 33.333 0.00 0.00 0.00 3.93
4926 5458 9.587772 CACTAAACAATCTAGTATAACACAGCT 57.412 33.333 0.00 0.00 0.00 4.24
4927 5459 8.818057 CCACTAAACAATCTAGTATAACACAGC 58.182 37.037 0.00 0.00 0.00 4.40
4928 5460 8.818057 GCCACTAAACAATCTAGTATAACACAG 58.182 37.037 0.00 0.00 0.00 3.66
4929 5461 7.490079 CGCCACTAAACAATCTAGTATAACACA 59.510 37.037 0.00 0.00 0.00 3.72
4930 5462 7.516312 GCGCCACTAAACAATCTAGTATAACAC 60.516 40.741 0.00 0.00 0.00 3.32
4931 5463 6.477688 GCGCCACTAAACAATCTAGTATAACA 59.522 38.462 0.00 0.00 0.00 2.41
4932 5464 6.345565 CGCGCCACTAAACAATCTAGTATAAC 60.346 42.308 0.00 0.00 0.00 1.89
4933 5465 5.688621 CGCGCCACTAAACAATCTAGTATAA 59.311 40.000 0.00 0.00 0.00 0.98
4934 5466 5.217393 CGCGCCACTAAACAATCTAGTATA 58.783 41.667 0.00 0.00 0.00 1.47
4935 5467 4.049186 CGCGCCACTAAACAATCTAGTAT 58.951 43.478 0.00 0.00 0.00 2.12
4936 5468 3.441163 CGCGCCACTAAACAATCTAGTA 58.559 45.455 0.00 0.00 0.00 1.82
4937 5469 2.268298 CGCGCCACTAAACAATCTAGT 58.732 47.619 0.00 0.00 0.00 2.57
4938 5470 1.593006 CCGCGCCACTAAACAATCTAG 59.407 52.381 0.00 0.00 0.00 2.43
4939 5471 1.647346 CCGCGCCACTAAACAATCTA 58.353 50.000 0.00 0.00 0.00 1.98
4940 5472 1.024579 CCCGCGCCACTAAACAATCT 61.025 55.000 0.00 0.00 0.00 2.40
4966 5498 5.470047 TTTTACCAACAATACCGGCAAAT 57.530 34.783 0.00 0.00 0.00 2.32
4972 5504 8.582433 AAGTTGAAATTTTACCAACAATACCG 57.418 30.769 18.23 0.00 41.72 4.02
4990 5522 8.324567 GCATCGATTTGTTTTTACAAAGTTGAA 58.675 29.630 0.00 0.00 42.03 2.69
5067 5600 9.944376 AATTTCAAGCTCTAGTCTGTTACATAA 57.056 29.630 0.00 0.00 0.00 1.90
5095 5640 4.449743 TCAGATAAAAACGGAGAAACCACG 59.550 41.667 0.00 0.00 38.90 4.94
5227 5777 6.705825 ACAACAGGAAAATTCATTTTAGCACC 59.294 34.615 0.00 0.00 39.86 5.01
5273 5824 8.311109 TCTATCACAGTGAAGTATTTTAGCACA 58.689 33.333 7.50 0.00 32.16 4.57
5276 5827 9.757227 ATCTCTATCACAGTGAAGTATTTTAGC 57.243 33.333 7.50 0.00 30.87 3.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.