Multiple sequence alignment - TraesCS1A01G038800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G038800 chr1A 100.000 2291 0 0 1 2291 21086875 21084585 0.000000e+00 4231
1 TraesCS1A01G038800 chr4D 87.610 1251 94 17 299 1533 312073165 312071960 0.000000e+00 1395
2 TraesCS1A01G038800 chr4D 93.824 761 36 5 1534 2291 482709774 482709022 0.000000e+00 1134
3 TraesCS1A01G038800 chr4D 90.604 298 25 3 1 298 481199781 481200075 2.130000e-105 392
4 TraesCS1A01G038800 chr1D 94.335 759 33 4 1535 2291 62152141 62152891 0.000000e+00 1155
5 TraesCS1A01G038800 chr1D 93.553 760 37 7 1535 2291 420002824 420002074 0.000000e+00 1122
6 TraesCS1A01G038800 chr1D 90.301 299 25 4 1 297 293129790 293129494 2.760000e-104 388
7 TraesCS1A01G038800 chr2D 94.180 756 33 5 1539 2291 650594149 650594896 0.000000e+00 1142
8 TraesCS1A01G038800 chr5D 95.139 720 31 3 1575 2291 20988145 20988863 0.000000e+00 1133
9 TraesCS1A01G038800 chr3D 93.816 760 36 5 1535 2291 432643875 432643124 0.000000e+00 1133
10 TraesCS1A01G038800 chr7D 94.650 729 35 3 1567 2291 630454103 630454831 0.000000e+00 1127
11 TraesCS1A01G038800 chr7D 93.651 756 37 5 1539 2291 571274843 571275590 0.000000e+00 1120
12 TraesCS1A01G038800 chr7D 90.397 302 26 3 1 302 593174354 593174652 5.930000e-106 394
13 TraesCS1A01G038800 chr2B 94.490 726 38 1 1567 2290 251120505 251119780 0.000000e+00 1118
14 TraesCS1A01G038800 chr2A 92.675 314 14 1 1220 1533 754646313 754646009 5.810000e-121 444
15 TraesCS1A01G038800 chr1B 92.203 295 21 2 1 295 554033501 554033793 1.270000e-112 416
16 TraesCS1A01G038800 chr7A 91.892 296 21 3 1 296 134986085 134985793 5.890000e-111 411
17 TraesCS1A01G038800 chr3B 91.186 295 23 2 1 295 236719273 236719564 4.590000e-107 398
18 TraesCS1A01G038800 chr6D 90.333 300 25 4 1 300 327629968 327630263 7.670000e-105 390
19 TraesCS1A01G038800 chr4A 90.572 297 23 3 1 297 375761302 375761011 2.760000e-104 388
20 TraesCS1A01G038800 chr3A 90.785 293 21 4 4 295 647020403 647020116 9.930000e-104 387


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G038800 chr1A 21084585 21086875 2290 True 4231 4231 100.000 1 2291 1 chr1A.!!$R1 2290
1 TraesCS1A01G038800 chr4D 312071960 312073165 1205 True 1395 1395 87.610 299 1533 1 chr4D.!!$R1 1234
2 TraesCS1A01G038800 chr4D 482709022 482709774 752 True 1134 1134 93.824 1534 2291 1 chr4D.!!$R2 757
3 TraesCS1A01G038800 chr1D 62152141 62152891 750 False 1155 1155 94.335 1535 2291 1 chr1D.!!$F1 756
4 TraesCS1A01G038800 chr1D 420002074 420002824 750 True 1122 1122 93.553 1535 2291 1 chr1D.!!$R2 756
5 TraesCS1A01G038800 chr2D 650594149 650594896 747 False 1142 1142 94.180 1539 2291 1 chr2D.!!$F1 752
6 TraesCS1A01G038800 chr5D 20988145 20988863 718 False 1133 1133 95.139 1575 2291 1 chr5D.!!$F1 716
7 TraesCS1A01G038800 chr3D 432643124 432643875 751 True 1133 1133 93.816 1535 2291 1 chr3D.!!$R1 756
8 TraesCS1A01G038800 chr7D 630454103 630454831 728 False 1127 1127 94.650 1567 2291 1 chr7D.!!$F3 724
9 TraesCS1A01G038800 chr7D 571274843 571275590 747 False 1120 1120 93.651 1539 2291 1 chr7D.!!$F1 752
10 TraesCS1A01G038800 chr2B 251119780 251120505 725 True 1118 1118 94.490 1567 2290 1 chr2B.!!$R1 723

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
268 269 0.179062 ATCGTTCTGATGCAGAGGCC 60.179 55.0 0.0 0.0 41.75 5.19 F
1255 1272 0.239347 CCAAGTTTTCGCTGGAGCAG 59.761 55.0 0.0 0.0 42.21 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1285 1302 0.034574 TGCACCACGATGGCCTAAAT 60.035 50.0 3.32 0.0 42.67 1.40 R
2123 2146 0.183014 CATCAGGCTTGGGATGCTCT 59.817 55.0 0.00 0.0 35.03 4.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 4.878774 GGATCTATCCGCTGCGAG 57.121 61.111 25.45 13.35 37.19 5.03
19 20 2.258317 GGATCTATCCGCTGCGAGA 58.742 57.895 25.45 18.53 37.19 4.04
20 21 0.814457 GGATCTATCCGCTGCGAGAT 59.186 55.000 25.45 22.39 37.19 2.75
21 22 1.468908 GGATCTATCCGCTGCGAGATG 60.469 57.143 25.45 16.54 37.19 2.90
22 23 0.529833 ATCTATCCGCTGCGAGATGG 59.470 55.000 25.45 22.98 0.00 3.51
23 24 0.823769 TCTATCCGCTGCGAGATGGT 60.824 55.000 25.45 5.22 0.00 3.55
24 25 0.881796 CTATCCGCTGCGAGATGGTA 59.118 55.000 25.45 6.22 0.00 3.25
25 26 0.881796 TATCCGCTGCGAGATGGTAG 59.118 55.000 25.45 3.79 0.00 3.18
26 27 1.109920 ATCCGCTGCGAGATGGTAGT 61.110 55.000 25.45 0.15 0.00 2.73
27 28 1.141881 CCGCTGCGAGATGGTAGTT 59.858 57.895 25.45 0.00 0.00 2.24
28 29 0.872021 CCGCTGCGAGATGGTAGTTC 60.872 60.000 25.45 0.00 0.00 3.01
29 30 1.202973 CGCTGCGAGATGGTAGTTCG 61.203 60.000 18.66 0.00 37.40 3.95
30 31 0.872021 GCTGCGAGATGGTAGTTCGG 60.872 60.000 0.00 0.00 35.05 4.30
31 32 0.738975 CTGCGAGATGGTAGTTCGGA 59.261 55.000 0.00 0.00 35.05 4.55
32 33 1.134367 CTGCGAGATGGTAGTTCGGAA 59.866 52.381 0.00 0.00 34.37 4.30
33 34 1.754803 TGCGAGATGGTAGTTCGGAAT 59.245 47.619 0.00 0.00 35.05 3.01
34 35 2.953648 TGCGAGATGGTAGTTCGGAATA 59.046 45.455 0.00 0.00 35.05 1.75
35 36 3.572682 TGCGAGATGGTAGTTCGGAATAT 59.427 43.478 0.00 0.00 35.05 1.28
36 37 4.038763 TGCGAGATGGTAGTTCGGAATATT 59.961 41.667 0.00 0.00 35.05 1.28
37 38 4.989168 GCGAGATGGTAGTTCGGAATATTT 59.011 41.667 0.00 0.00 35.05 1.40
38 39 5.465724 GCGAGATGGTAGTTCGGAATATTTT 59.534 40.000 0.00 0.00 35.05 1.82
39 40 6.346678 GCGAGATGGTAGTTCGGAATATTTTC 60.347 42.308 0.00 0.00 35.05 2.29
40 41 6.700081 CGAGATGGTAGTTCGGAATATTTTCA 59.300 38.462 0.00 0.00 33.23 2.69
41 42 7.223971 CGAGATGGTAGTTCGGAATATTTTCAA 59.776 37.037 0.00 0.00 33.23 2.69
42 43 8.209917 AGATGGTAGTTCGGAATATTTTCAAC 57.790 34.615 0.00 0.00 33.23 3.18
43 44 6.746745 TGGTAGTTCGGAATATTTTCAACC 57.253 37.500 0.00 0.00 33.23 3.77
44 45 6.478129 TGGTAGTTCGGAATATTTTCAACCT 58.522 36.000 0.00 0.00 33.23 3.50
45 46 6.373216 TGGTAGTTCGGAATATTTTCAACCTG 59.627 38.462 0.00 0.00 33.23 4.00
46 47 6.373495 GGTAGTTCGGAATATTTTCAACCTGT 59.627 38.462 0.00 0.00 33.23 4.00
47 48 6.894339 AGTTCGGAATATTTTCAACCTGTT 57.106 33.333 0.00 0.00 33.23 3.16
48 49 7.284919 AGTTCGGAATATTTTCAACCTGTTT 57.715 32.000 0.00 0.00 33.23 2.83
49 50 7.145323 AGTTCGGAATATTTTCAACCTGTTTG 58.855 34.615 0.00 0.00 36.42 2.93
50 51 6.019779 TCGGAATATTTTCAACCTGTTTGG 57.980 37.500 0.00 0.00 35.69 3.28
51 52 5.770663 TCGGAATATTTTCAACCTGTTTGGA 59.229 36.000 0.00 0.00 35.69 3.53
52 53 6.435904 TCGGAATATTTTCAACCTGTTTGGAT 59.564 34.615 0.00 0.00 35.69 3.41
53 54 6.531240 CGGAATATTTTCAACCTGTTTGGATG 59.469 38.462 0.00 0.00 39.66 3.51
54 55 6.818142 GGAATATTTTCAACCTGTTTGGATGG 59.182 38.462 0.00 0.00 38.90 3.51
55 56 3.467374 TTTTCAACCTGTTTGGATGGC 57.533 42.857 0.00 0.00 38.90 4.40
56 57 0.958091 TTCAACCTGTTTGGATGGCG 59.042 50.000 0.00 0.00 38.90 5.69
57 58 0.893270 TCAACCTGTTTGGATGGCGG 60.893 55.000 0.00 0.00 38.90 6.13
58 59 1.152830 AACCTGTTTGGATGGCGGT 59.847 52.632 0.00 0.00 39.71 5.68
59 60 0.893727 AACCTGTTTGGATGGCGGTC 60.894 55.000 0.00 0.00 39.71 4.79
60 61 1.303236 CCTGTTTGGATGGCGGTCA 60.303 57.895 0.00 0.00 38.35 4.02
61 62 0.680921 CCTGTTTGGATGGCGGTCAT 60.681 55.000 0.00 0.00 38.35 3.06
62 63 0.452987 CTGTTTGGATGGCGGTCATG 59.547 55.000 0.00 0.00 35.97 3.07
63 64 0.251121 TGTTTGGATGGCGGTCATGT 60.251 50.000 0.00 0.00 35.97 3.21
64 65 1.003696 TGTTTGGATGGCGGTCATGTA 59.996 47.619 0.00 0.00 35.97 2.29
65 66 2.088423 GTTTGGATGGCGGTCATGTAA 58.912 47.619 0.00 0.00 35.97 2.41
66 67 2.687935 GTTTGGATGGCGGTCATGTAAT 59.312 45.455 0.00 0.00 35.97 1.89
67 68 3.847671 TTGGATGGCGGTCATGTAATA 57.152 42.857 0.00 0.00 35.97 0.98
68 69 3.401033 TGGATGGCGGTCATGTAATAG 57.599 47.619 0.00 0.00 35.97 1.73
69 70 2.038426 TGGATGGCGGTCATGTAATAGG 59.962 50.000 0.00 0.00 35.97 2.57
70 71 2.301870 GGATGGCGGTCATGTAATAGGA 59.698 50.000 0.00 0.00 35.97 2.94
71 72 3.055094 GGATGGCGGTCATGTAATAGGAT 60.055 47.826 0.00 0.00 35.97 3.24
72 73 4.161565 GGATGGCGGTCATGTAATAGGATA 59.838 45.833 0.00 0.00 35.97 2.59
73 74 4.801330 TGGCGGTCATGTAATAGGATAG 57.199 45.455 0.00 0.00 0.00 2.08
74 75 3.513912 TGGCGGTCATGTAATAGGATAGG 59.486 47.826 0.00 0.00 0.00 2.57
75 76 3.522553 GCGGTCATGTAATAGGATAGGC 58.477 50.000 0.00 0.00 0.00 3.93
76 77 3.056107 GCGGTCATGTAATAGGATAGGCA 60.056 47.826 0.00 0.00 0.00 4.75
77 78 4.562757 GCGGTCATGTAATAGGATAGGCAA 60.563 45.833 0.00 0.00 0.00 4.52
78 79 5.734720 CGGTCATGTAATAGGATAGGCAAT 58.265 41.667 0.00 0.00 0.00 3.56
79 80 6.173339 CGGTCATGTAATAGGATAGGCAATT 58.827 40.000 0.00 0.00 0.00 2.32
80 81 7.327975 CGGTCATGTAATAGGATAGGCAATTA 58.672 38.462 0.00 0.00 0.00 1.40
81 82 7.492669 CGGTCATGTAATAGGATAGGCAATTAG 59.507 40.741 0.00 0.00 0.00 1.73
82 83 8.322091 GGTCATGTAATAGGATAGGCAATTAGT 58.678 37.037 0.00 0.00 0.00 2.24
83 84 9.726438 GTCATGTAATAGGATAGGCAATTAGTT 57.274 33.333 0.00 0.00 0.00 2.24
106 107 8.541234 AGTTTACCTATCTATATTTAGCCAGCC 58.459 37.037 0.00 0.00 0.00 4.85
107 108 5.599999 ACCTATCTATATTTAGCCAGCCG 57.400 43.478 0.00 0.00 0.00 5.52
108 109 4.406003 ACCTATCTATATTTAGCCAGCCGG 59.594 45.833 0.00 0.00 0.00 6.13
109 110 4.406003 CCTATCTATATTTAGCCAGCCGGT 59.594 45.833 1.90 0.00 33.28 5.28
110 111 4.910458 ATCTATATTTAGCCAGCCGGTT 57.090 40.909 1.90 0.00 33.28 4.44
111 112 4.002906 TCTATATTTAGCCAGCCGGTTG 57.997 45.455 11.98 11.98 33.28 3.77
112 113 2.729028 ATATTTAGCCAGCCGGTTGT 57.271 45.000 17.69 1.85 33.28 3.32
113 114 1.745232 TATTTAGCCAGCCGGTTGTG 58.255 50.000 17.69 9.73 33.28 3.33
114 115 0.965363 ATTTAGCCAGCCGGTTGTGG 60.965 55.000 17.69 15.43 36.85 4.17
122 123 2.593436 CCGGTTGTGGCGTCCTTT 60.593 61.111 0.00 0.00 0.00 3.11
123 124 1.301874 CCGGTTGTGGCGTCCTTTA 60.302 57.895 0.00 0.00 0.00 1.85
124 125 0.675522 CCGGTTGTGGCGTCCTTTAT 60.676 55.000 0.00 0.00 0.00 1.40
125 126 1.161843 CGGTTGTGGCGTCCTTTATT 58.838 50.000 0.00 0.00 0.00 1.40
126 127 1.538075 CGGTTGTGGCGTCCTTTATTT 59.462 47.619 0.00 0.00 0.00 1.40
127 128 2.667171 CGGTTGTGGCGTCCTTTATTTG 60.667 50.000 0.00 0.00 0.00 2.32
128 129 2.324860 GTTGTGGCGTCCTTTATTTGC 58.675 47.619 0.00 0.00 0.00 3.68
129 130 0.885196 TGTGGCGTCCTTTATTTGCC 59.115 50.000 0.00 0.00 45.91 4.52
130 131 1.173913 GTGGCGTCCTTTATTTGCCT 58.826 50.000 2.99 0.00 45.90 4.75
131 132 2.290387 TGTGGCGTCCTTTATTTGCCTA 60.290 45.455 2.99 0.00 45.90 3.93
132 133 2.354821 GTGGCGTCCTTTATTTGCCTAG 59.645 50.000 2.99 0.00 45.90 3.02
133 134 2.026636 TGGCGTCCTTTATTTGCCTAGT 60.027 45.455 2.99 0.00 45.90 2.57
134 135 3.014623 GGCGTCCTTTATTTGCCTAGTT 58.985 45.455 0.00 0.00 42.44 2.24
135 136 3.442625 GGCGTCCTTTATTTGCCTAGTTT 59.557 43.478 0.00 0.00 42.44 2.66
136 137 4.412207 GCGTCCTTTATTTGCCTAGTTTG 58.588 43.478 0.00 0.00 0.00 2.93
137 138 4.082949 GCGTCCTTTATTTGCCTAGTTTGT 60.083 41.667 0.00 0.00 0.00 2.83
138 139 5.390613 CGTCCTTTATTTGCCTAGTTTGTG 58.609 41.667 0.00 0.00 0.00 3.33
139 140 5.048991 CGTCCTTTATTTGCCTAGTTTGTGT 60.049 40.000 0.00 0.00 0.00 3.72
140 141 6.514376 CGTCCTTTATTTGCCTAGTTTGTGTT 60.514 38.462 0.00 0.00 0.00 3.32
141 142 7.207383 GTCCTTTATTTGCCTAGTTTGTGTTT 58.793 34.615 0.00 0.00 0.00 2.83
142 143 7.381408 GTCCTTTATTTGCCTAGTTTGTGTTTC 59.619 37.037 0.00 0.00 0.00 2.78
143 144 7.286775 TCCTTTATTTGCCTAGTTTGTGTTTCT 59.713 33.333 0.00 0.00 0.00 2.52
144 145 8.573035 CCTTTATTTGCCTAGTTTGTGTTTCTA 58.427 33.333 0.00 0.00 0.00 2.10
145 146 9.612620 CTTTATTTGCCTAGTTTGTGTTTCTAG 57.387 33.333 0.00 0.00 0.00 2.43
146 147 5.432885 TTTGCCTAGTTTGTGTTTCTAGC 57.567 39.130 0.00 0.00 32.41 3.42
147 148 3.408634 TGCCTAGTTTGTGTTTCTAGCC 58.591 45.455 0.00 0.00 32.41 3.93
148 149 2.747989 GCCTAGTTTGTGTTTCTAGCCC 59.252 50.000 0.00 0.00 32.41 5.19
149 150 3.809324 GCCTAGTTTGTGTTTCTAGCCCA 60.809 47.826 0.00 0.00 32.41 5.36
150 151 4.589908 CCTAGTTTGTGTTTCTAGCCCAT 58.410 43.478 0.00 0.00 32.41 4.00
151 152 5.010282 CCTAGTTTGTGTTTCTAGCCCATT 58.990 41.667 0.00 0.00 32.41 3.16
152 153 5.476945 CCTAGTTTGTGTTTCTAGCCCATTT 59.523 40.000 0.00 0.00 32.41 2.32
153 154 5.869649 AGTTTGTGTTTCTAGCCCATTTT 57.130 34.783 0.00 0.00 0.00 1.82
154 155 5.600696 AGTTTGTGTTTCTAGCCCATTTTG 58.399 37.500 0.00 0.00 0.00 2.44
155 156 4.599047 TTGTGTTTCTAGCCCATTTTGG 57.401 40.909 0.00 0.00 37.25 3.28
165 166 2.205022 CCCATTTTGGCTCTGAGTGA 57.795 50.000 6.53 0.00 35.79 3.41
166 167 2.089980 CCCATTTTGGCTCTGAGTGAG 58.910 52.381 6.53 0.00 45.33 3.51
205 206 6.867662 TTTTCAGTTGGAGACTTTGAGATC 57.132 37.500 0.00 0.00 36.10 2.75
206 207 5.815233 TTCAGTTGGAGACTTTGAGATCT 57.185 39.130 0.00 0.00 36.10 2.75
207 208 5.815233 TCAGTTGGAGACTTTGAGATCTT 57.185 39.130 0.00 0.00 36.10 2.40
208 209 5.545588 TCAGTTGGAGACTTTGAGATCTTG 58.454 41.667 0.00 0.00 36.10 3.02
209 210 5.070981 TCAGTTGGAGACTTTGAGATCTTGT 59.929 40.000 0.00 0.00 36.10 3.16
210 211 5.762218 CAGTTGGAGACTTTGAGATCTTGTT 59.238 40.000 0.00 0.00 36.10 2.83
211 212 5.762218 AGTTGGAGACTTTGAGATCTTGTTG 59.238 40.000 0.00 0.00 33.92 3.33
212 213 4.645535 TGGAGACTTTGAGATCTTGTTGG 58.354 43.478 0.00 0.00 0.00 3.77
213 214 4.347876 TGGAGACTTTGAGATCTTGTTGGA 59.652 41.667 0.00 0.00 0.00 3.53
214 215 5.163205 TGGAGACTTTGAGATCTTGTTGGAA 60.163 40.000 0.00 0.00 0.00 3.53
215 216 5.180304 GGAGACTTTGAGATCTTGTTGGAAC 59.820 44.000 0.00 0.00 0.00 3.62
216 217 5.066593 AGACTTTGAGATCTTGTTGGAACC 58.933 41.667 0.00 0.00 0.00 3.62
217 218 5.053978 ACTTTGAGATCTTGTTGGAACCT 57.946 39.130 0.00 0.00 0.00 3.50
218 219 6.043243 AGACTTTGAGATCTTGTTGGAACCTA 59.957 38.462 0.00 0.00 0.00 3.08
219 220 6.784031 ACTTTGAGATCTTGTTGGAACCTAT 58.216 36.000 0.00 0.00 0.00 2.57
220 221 7.234355 ACTTTGAGATCTTGTTGGAACCTATT 58.766 34.615 0.00 0.00 0.00 1.73
221 222 7.725844 ACTTTGAGATCTTGTTGGAACCTATTT 59.274 33.333 0.00 0.00 0.00 1.40
222 223 9.231297 CTTTGAGATCTTGTTGGAACCTATTTA 57.769 33.333 0.00 0.00 0.00 1.40
223 224 9.753674 TTTGAGATCTTGTTGGAACCTATTTAT 57.246 29.630 0.00 0.00 0.00 1.40
224 225 9.753674 TTGAGATCTTGTTGGAACCTATTTATT 57.246 29.630 0.00 0.00 0.00 1.40
225 226 9.753674 TGAGATCTTGTTGGAACCTATTTATTT 57.246 29.630 0.00 0.00 0.00 1.40
227 228 8.971073 AGATCTTGTTGGAACCTATTTATTTGG 58.029 33.333 0.00 0.00 0.00 3.28
228 229 8.664669 ATCTTGTTGGAACCTATTTATTTGGT 57.335 30.769 0.00 0.00 35.29 3.67
229 230 8.485578 TCTTGTTGGAACCTATTTATTTGGTT 57.514 30.769 0.00 0.00 45.57 3.67
230 231 8.929487 TCTTGTTGGAACCTATTTATTTGGTTT 58.071 29.630 0.00 0.00 43.28 3.27
249 250 9.778741 TTTGGTTTAATAAAATGGTTGTATGCA 57.221 25.926 0.00 0.00 0.00 3.96
250 251 9.950496 TTGGTTTAATAAAATGGTTGTATGCAT 57.050 25.926 3.79 3.79 0.00 3.96
251 252 9.593134 TGGTTTAATAAAATGGTTGTATGCATC 57.407 29.630 0.19 0.00 0.00 3.91
252 253 8.751335 GGTTTAATAAAATGGTTGTATGCATCG 58.249 33.333 0.19 0.00 0.00 3.84
253 254 9.296400 GTTTAATAAAATGGTTGTATGCATCGT 57.704 29.630 0.19 0.00 0.00 3.73
254 255 9.862371 TTTAATAAAATGGTTGTATGCATCGTT 57.138 25.926 0.19 0.00 0.00 3.85
255 256 7.985634 AATAAAATGGTTGTATGCATCGTTC 57.014 32.000 0.19 0.00 0.00 3.95
256 257 5.643379 AAAATGGTTGTATGCATCGTTCT 57.357 34.783 0.19 0.00 0.00 3.01
257 258 4.621068 AATGGTTGTATGCATCGTTCTG 57.379 40.909 0.19 0.00 0.00 3.02
258 259 3.326836 TGGTTGTATGCATCGTTCTGA 57.673 42.857 0.19 0.00 0.00 3.27
259 260 3.872696 TGGTTGTATGCATCGTTCTGAT 58.127 40.909 0.19 0.00 38.01 2.90
267 268 3.376218 ATCGTTCTGATGCAGAGGC 57.624 52.632 0.00 0.00 41.75 4.70
268 269 0.179062 ATCGTTCTGATGCAGAGGCC 60.179 55.000 0.00 0.00 41.75 5.19
269 270 2.169789 CGTTCTGATGCAGAGGCCG 61.170 63.158 0.00 0.00 41.75 6.13
270 271 1.817099 GTTCTGATGCAGAGGCCGG 60.817 63.158 0.00 0.00 41.75 6.13
271 272 3.035173 TTCTGATGCAGAGGCCGGG 62.035 63.158 2.18 0.00 41.75 5.73
272 273 3.473647 CTGATGCAGAGGCCGGGA 61.474 66.667 2.18 0.00 40.13 5.14
273 274 3.008517 TGATGCAGAGGCCGGGAA 61.009 61.111 2.18 0.00 40.13 3.97
274 275 2.203126 GATGCAGAGGCCGGGAAG 60.203 66.667 2.18 0.00 40.13 3.46
275 276 2.688666 ATGCAGAGGCCGGGAAGA 60.689 61.111 2.18 0.00 40.13 2.87
276 277 2.049627 GATGCAGAGGCCGGGAAGAT 62.050 60.000 2.18 0.00 40.13 2.40
277 278 2.049627 ATGCAGAGGCCGGGAAGATC 62.050 60.000 2.18 0.00 40.13 2.75
278 279 2.825264 CAGAGGCCGGGAAGATCC 59.175 66.667 2.18 0.00 35.23 3.36
293 294 6.419484 GGAAGATCCCCTTTTTGAGAAAAA 57.581 37.500 0.00 0.00 37.99 1.94
321 322 2.011947 ACTAGTACGCGACATGTGCTA 58.988 47.619 15.93 1.72 34.10 3.49
340 341 5.339177 TGCTATGCACGTTATGGAAAAATG 58.661 37.500 0.00 0.00 31.71 2.32
344 345 6.704512 ATGCACGTTATGGAAAAATGAAAC 57.295 33.333 0.00 0.00 29.34 2.78
359 360 9.313118 GAAAAATGAAACGGGCAAGAATATTAT 57.687 29.630 0.00 0.00 0.00 1.28
431 432 9.550406 GGGCATTGTATGTATTTACACTACTAA 57.450 33.333 0.00 0.00 39.30 2.24
451 452 6.311723 ACTAACGTCTTTGTTGTTTTCACTG 58.688 36.000 0.00 0.00 33.32 3.66
486 487 5.883661 CACAAATATCATGTGTCCTTGTCC 58.116 41.667 11.56 0.00 42.48 4.02
503 504 3.804036 TGTCCAGGGCGTTTATCTATTG 58.196 45.455 0.00 0.00 0.00 1.90
511 512 5.820947 AGGGCGTTTATCTATTGGTAGTTTG 59.179 40.000 0.00 0.00 0.00 2.93
673 678 9.249053 TGACAATTGTTTATAAAGGGCTAATCA 57.751 29.630 13.36 0.00 0.00 2.57
718 723 4.202524 ACAAAGGGTTACAACAGCCATAGA 60.203 41.667 0.00 0.00 36.72 1.98
719 724 3.914426 AGGGTTACAACAGCCATAGAG 57.086 47.619 0.00 0.00 36.72 2.43
720 725 2.092914 AGGGTTACAACAGCCATAGAGC 60.093 50.000 0.00 0.00 36.72 4.09
721 726 2.092914 GGGTTACAACAGCCATAGAGCT 60.093 50.000 0.00 0.00 46.45 4.09
732 737 3.254657 AGCCATAGAGCTAGCTACTTTCG 59.745 47.826 19.38 5.05 42.70 3.46
774 779 9.868277 TTTAAGGGTGCTACATTATTTCATTTG 57.132 29.630 0.00 0.00 0.00 2.32
775 780 7.480760 AAGGGTGCTACATTATTTCATTTGT 57.519 32.000 0.00 0.00 0.00 2.83
799 804 2.921221 AGAAGGGTCAGGATTCTTCCA 58.079 47.619 0.00 0.00 45.30 3.53
800 805 3.468850 AGAAGGGTCAGGATTCTTCCAT 58.531 45.455 0.00 0.00 45.30 3.41
801 806 3.854994 AGAAGGGTCAGGATTCTTCCATT 59.145 43.478 0.00 0.00 45.30 3.16
802 807 4.293368 AGAAGGGTCAGGATTCTTCCATTT 59.707 41.667 0.00 0.00 45.30 2.32
803 808 5.492524 AGAAGGGTCAGGATTCTTCCATTTA 59.507 40.000 0.00 0.00 45.30 1.40
804 809 5.796502 AGGGTCAGGATTCTTCCATTTAA 57.203 39.130 0.00 0.00 45.30 1.52
809 814 7.981789 GGGTCAGGATTCTTCCATTTAAATTTC 59.018 37.037 0.00 0.00 45.30 2.17
820 825 5.045942 TCCATTTAAATTTCTTTGGAGGGCC 60.046 40.000 10.33 0.00 0.00 5.80
836 841 3.056080 AGGGCCCAATCATGTACTGTAT 58.944 45.455 27.56 0.00 0.00 2.29
852 857 4.205587 ACTGTATGTAGTAGTCTTCCCGG 58.794 47.826 0.00 0.00 0.00 5.73
880 885 4.530857 CGAGCCTACGCCAAGGGG 62.531 72.222 1.12 1.12 37.11 4.79
911 916 7.378728 CCAGGTCGTTTTCTTTTACAAGATTTC 59.621 37.037 0.00 0.00 38.89 2.17
915 920 9.887406 GTCGTTTTCTTTTACAAGATTTCCATA 57.113 29.630 0.00 0.00 38.89 2.74
932 937 3.126831 CCATATCGTTCTTGACTCCTGC 58.873 50.000 0.00 0.00 0.00 4.85
934 939 4.437239 CATATCGTTCTTGACTCCTGCTT 58.563 43.478 0.00 0.00 0.00 3.91
941 946 2.639347 TCTTGACTCCTGCTTCATCCAA 59.361 45.455 0.00 0.00 0.00 3.53
979 984 1.365368 GGCTTGCCTTCTTCTCTCGC 61.365 60.000 4.11 0.00 0.00 5.03
985 990 4.129737 TTCTTCTCTCGCCGGCCG 62.130 66.667 23.46 21.04 38.61 6.13
987 992 4.856607 CTTCTCTCGCCGGCCGTC 62.857 72.222 26.12 11.31 38.35 4.79
1000 1005 3.625897 CCGTCACCAGCCTCACCA 61.626 66.667 0.00 0.00 0.00 4.17
1001 1006 2.665000 CGTCACCAGCCTCACCAT 59.335 61.111 0.00 0.00 0.00 3.55
1002 1007 1.742880 CGTCACCAGCCTCACCATG 60.743 63.158 0.00 0.00 0.00 3.66
1003 1008 2.042831 GTCACCAGCCTCACCATGC 61.043 63.158 0.00 0.00 0.00 4.06
1004 1009 2.753043 CACCAGCCTCACCATGCC 60.753 66.667 0.00 0.00 0.00 4.40
1031 1036 1.376942 CCAGTCTTCTGCCTGCTGG 60.377 63.158 5.03 5.03 40.09 4.85
1038 1043 4.340246 CTGCCTGCTGGTGCCTCA 62.340 66.667 11.69 0.00 38.71 3.86
1044 1049 2.743928 GCTGGTGCCTCACTTCCG 60.744 66.667 0.00 0.00 34.40 4.30
1051 1056 2.707849 GCCTCACTTCCGCCGTCTA 61.708 63.158 0.00 0.00 0.00 2.59
1060 1065 0.591659 TCCGCCGTCTATCATCTTCG 59.408 55.000 0.00 0.00 0.00 3.79
1071 1076 1.035385 TCATCTTCGTGCTAGGGCGA 61.035 55.000 0.00 0.00 42.25 5.54
1092 1097 2.348998 CCTCACACTCCCACAGGC 59.651 66.667 0.00 0.00 0.00 4.85
1100 1105 0.969409 ACTCCCACAGGCCGTACTAC 60.969 60.000 0.00 0.00 0.00 2.73
1107 1112 0.745468 CAGGCCGTACTACTCTTCCC 59.255 60.000 0.00 0.00 0.00 3.97
1111 1116 1.684248 GCCGTACTACTCTTCCCCTCA 60.684 57.143 0.00 0.00 0.00 3.86
1112 1117 2.299521 CCGTACTACTCTTCCCCTCAG 58.700 57.143 0.00 0.00 0.00 3.35
1126 1143 1.492133 CCTCAGCCTGGAAAGACCCA 61.492 60.000 0.00 0.00 38.00 4.51
1173 1190 2.223044 GCAGCTCTATGTGGCGTTTAAC 60.223 50.000 0.00 0.00 0.00 2.01
1191 1208 1.597854 CTGCTTCAAGGCACCACGA 60.598 57.895 0.00 0.00 37.29 4.35
1207 1224 1.247567 ACGAAGTGGCAAGAAATGGG 58.752 50.000 0.00 0.00 42.51 4.00
1218 1235 0.909610 AGAAATGGGGTCGCTGGAGA 60.910 55.000 0.00 0.00 0.00 3.71
1245 1262 0.881796 CCGAGGGCTTCCAAGTTTTC 59.118 55.000 0.00 0.00 0.00 2.29
1255 1272 0.239347 CCAAGTTTTCGCTGGAGCAG 59.761 55.000 0.00 0.00 42.21 4.24
1285 1302 7.673926 AGAAGGAAATTGGAAGGTGCTTTATTA 59.326 33.333 0.00 0.00 0.00 0.98
1294 1311 5.596772 GGAAGGTGCTTTATTATTTAGGCCA 59.403 40.000 5.01 0.00 0.00 5.36
1299 1316 6.142817 GTGCTTTATTATTTAGGCCATCGTG 58.857 40.000 5.01 0.00 0.00 4.35
1314 1331 3.674753 CCATCGTGGTGCAAAATTTTCTC 59.325 43.478 0.00 0.00 31.35 2.87
1316 1333 3.701241 TCGTGGTGCAAAATTTTCTCAC 58.299 40.909 17.94 17.94 0.00 3.51
1329 1346 7.776933 AAATTTTCTCACTGCTTTTCTTTCC 57.223 32.000 0.00 0.00 0.00 3.13
1332 1349 2.880890 TCTCACTGCTTTTCTTTCCTGC 59.119 45.455 0.00 0.00 0.00 4.85
1366 1383 6.460537 GCATGTTCCTTTGATGCTGAATCATA 60.461 38.462 0.00 0.00 44.84 2.15
1379 1396 9.190858 GATGCTGAATCATAACAGTTACTCTAG 57.809 37.037 0.00 0.00 36.62 2.43
1380 1397 6.980978 TGCTGAATCATAACAGTTACTCTAGC 59.019 38.462 0.00 2.82 36.62 3.42
1381 1398 6.980978 GCTGAATCATAACAGTTACTCTAGCA 59.019 38.462 0.00 0.00 36.62 3.49
1382 1399 7.655328 GCTGAATCATAACAGTTACTCTAGCAT 59.345 37.037 0.00 0.00 36.62 3.79
1383 1400 9.539825 CTGAATCATAACAGTTACTCTAGCATT 57.460 33.333 0.00 0.00 0.00 3.56
1384 1401 9.890629 TGAATCATAACAGTTACTCTAGCATTT 57.109 29.630 0.00 0.00 0.00 2.32
1386 1403 9.672673 AATCATAACAGTTACTCTAGCATTTGT 57.327 29.630 0.00 0.00 0.00 2.83
1388 1405 9.803315 TCATAACAGTTACTCTAGCATTTGTAG 57.197 33.333 0.00 0.00 0.00 2.74
1406 1423 7.913674 TTTGTAGCATTTGTTTCCAAAGTTT 57.086 28.000 0.00 0.00 43.45 2.66
1479 1496 1.578206 GAGTTGGCTCGGGTTCTTGC 61.578 60.000 0.00 0.00 31.39 4.01
1504 1521 1.410153 GCAGGCGGATCAATGGATTTT 59.590 47.619 0.00 0.00 32.67 1.82
1518 1535 9.699410 ATCAATGGATTTTAAGTTCAGTATGGA 57.301 29.630 0.00 0.00 36.16 3.41
1519 1536 9.699410 TCAATGGATTTTAAGTTCAGTATGGAT 57.301 29.630 0.00 0.00 36.16 3.41
1530 1547 2.906389 TCAGTATGGATAGTGGGATGGC 59.094 50.000 2.36 0.00 35.05 4.40
1533 1550 3.983410 AGTATGGATAGTGGGATGGCTTT 59.017 43.478 0.00 0.00 0.00 3.51
1534 1551 3.979501 ATGGATAGTGGGATGGCTTTT 57.020 42.857 0.00 0.00 0.00 2.27
1535 1552 3.756082 TGGATAGTGGGATGGCTTTTT 57.244 42.857 0.00 0.00 0.00 1.94
1565 1582 1.571773 AAAAGAGGATGACCCCCGGG 61.572 60.000 15.80 15.80 42.03 5.73
1585 1602 2.362369 CCCGGTCTCTGCATCTGGT 61.362 63.158 0.00 0.00 0.00 4.00
1614 1631 6.937465 TGCATACGGCCACTTTATTGATTATA 59.063 34.615 2.24 0.00 43.89 0.98
1667 1684 4.849813 TGTCTGAATCCATCATCTTGGT 57.150 40.909 0.00 0.00 37.44 3.67
1778 1795 1.990060 ACCAGCCGAGCCACATACT 60.990 57.895 0.00 0.00 0.00 2.12
1786 1803 4.225497 GCCACATACTGGGTCTGC 57.775 61.111 0.00 0.00 41.02 4.26
1836 1853 3.390521 TCGCCGCCATCTTCCACT 61.391 61.111 0.00 0.00 0.00 4.00
1895 1912 1.812922 GCCACTCAGCCATCGACAG 60.813 63.158 0.00 0.00 0.00 3.51
1941 1958 4.147449 CTGCGCGAGTCCATCCCA 62.147 66.667 12.10 0.00 0.00 4.37
1965 1984 2.997897 GGACCGAGCCTCCACAGT 60.998 66.667 0.00 0.00 0.00 3.55
2040 2062 1.217057 ATCCCCCAGCCATCACTTGT 61.217 55.000 0.00 0.00 0.00 3.16
2048 2070 3.007182 CCAGCCATCACTTGTTCCAAAAT 59.993 43.478 0.00 0.00 0.00 1.82
2062 2084 1.570803 CAAAATGATGCCCCCAGGAA 58.429 50.000 0.00 0.00 33.47 3.36
2077 2099 3.954258 CCCAGGAAGGAAAGCGATAAAAT 59.046 43.478 0.00 0.00 41.22 1.82
2096 2118 4.628963 AATGTCATCATCATCCGATCCA 57.371 40.909 0.00 0.00 32.56 3.41
2284 2307 1.371558 GTCGCTGGTCCCTTCAACT 59.628 57.895 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 0.814457 ATCTCGCAGCGGATAGATCC 59.186 55.000 16.42 0.00 43.65 3.36
2 3 1.468908 CCATCTCGCAGCGGATAGATC 60.469 57.143 16.42 0.00 0.00 2.75
3 4 0.529833 CCATCTCGCAGCGGATAGAT 59.470 55.000 16.42 13.16 0.00 1.98
5 6 0.881796 TACCATCTCGCAGCGGATAG 59.118 55.000 16.42 11.88 0.00 2.08
6 7 0.881796 CTACCATCTCGCAGCGGATA 59.118 55.000 16.42 0.53 0.00 2.59
7 8 1.109920 ACTACCATCTCGCAGCGGAT 61.110 55.000 16.42 13.56 0.00 4.18
8 9 1.320344 AACTACCATCTCGCAGCGGA 61.320 55.000 16.42 11.70 0.00 5.54
9 10 0.872021 GAACTACCATCTCGCAGCGG 60.872 60.000 16.42 5.91 0.00 5.52
10 11 1.202973 CGAACTACCATCTCGCAGCG 61.203 60.000 9.06 9.06 0.00 5.18
11 12 0.872021 CCGAACTACCATCTCGCAGC 60.872 60.000 0.00 0.00 0.00 5.25
12 13 0.738975 TCCGAACTACCATCTCGCAG 59.261 55.000 0.00 0.00 0.00 5.18
13 14 1.179152 TTCCGAACTACCATCTCGCA 58.821 50.000 0.00 0.00 0.00 5.10
14 15 2.510768 ATTCCGAACTACCATCTCGC 57.489 50.000 0.00 0.00 0.00 5.03
15 16 6.700081 TGAAAATATTCCGAACTACCATCTCG 59.300 38.462 0.00 0.00 34.49 4.04
16 17 8.336080 GTTGAAAATATTCCGAACTACCATCTC 58.664 37.037 0.00 0.00 34.49 2.75
17 18 7.282450 GGTTGAAAATATTCCGAACTACCATCT 59.718 37.037 0.00 0.00 34.49 2.90
18 19 7.282450 AGGTTGAAAATATTCCGAACTACCATC 59.718 37.037 0.00 0.00 34.49 3.51
19 20 7.067008 CAGGTTGAAAATATTCCGAACTACCAT 59.933 37.037 0.00 0.00 34.49 3.55
20 21 6.373216 CAGGTTGAAAATATTCCGAACTACCA 59.627 38.462 0.00 0.00 34.49 3.25
21 22 6.373495 ACAGGTTGAAAATATTCCGAACTACC 59.627 38.462 0.00 0.00 34.49 3.18
22 23 7.373778 ACAGGTTGAAAATATTCCGAACTAC 57.626 36.000 0.00 0.00 34.49 2.73
23 24 7.989416 AACAGGTTGAAAATATTCCGAACTA 57.011 32.000 0.00 0.00 34.49 2.24
24 25 6.894339 AACAGGTTGAAAATATTCCGAACT 57.106 33.333 0.00 0.00 34.49 3.01
25 26 6.364976 CCAAACAGGTTGAAAATATTCCGAAC 59.635 38.462 0.00 0.00 39.87 3.95
26 27 6.265649 TCCAAACAGGTTGAAAATATTCCGAA 59.734 34.615 0.00 0.00 39.87 4.30
27 28 5.770663 TCCAAACAGGTTGAAAATATTCCGA 59.229 36.000 0.00 0.00 39.87 4.55
28 29 6.019779 TCCAAACAGGTTGAAAATATTCCG 57.980 37.500 0.00 0.00 39.87 4.30
29 30 6.818142 CCATCCAAACAGGTTGAAAATATTCC 59.182 38.462 0.00 0.00 39.87 3.01
30 31 6.313658 GCCATCCAAACAGGTTGAAAATATTC 59.686 38.462 0.00 0.00 39.87 1.75
31 32 6.172630 GCCATCCAAACAGGTTGAAAATATT 58.827 36.000 0.00 0.00 39.87 1.28
32 33 5.624281 CGCCATCCAAACAGGTTGAAAATAT 60.624 40.000 0.00 0.00 39.87 1.28
33 34 4.321601 CGCCATCCAAACAGGTTGAAAATA 60.322 41.667 0.00 0.00 39.87 1.40
34 35 3.554752 CGCCATCCAAACAGGTTGAAAAT 60.555 43.478 0.00 0.00 39.87 1.82
35 36 2.223923 CGCCATCCAAACAGGTTGAAAA 60.224 45.455 0.00 0.00 39.87 2.29
36 37 1.339610 CGCCATCCAAACAGGTTGAAA 59.660 47.619 0.00 0.00 39.87 2.69
37 38 0.958091 CGCCATCCAAACAGGTTGAA 59.042 50.000 0.00 0.00 39.87 2.69
38 39 0.893270 CCGCCATCCAAACAGGTTGA 60.893 55.000 0.00 0.00 39.87 3.18
39 40 1.178534 ACCGCCATCCAAACAGGTTG 61.179 55.000 0.00 0.00 39.02 3.77
40 41 0.893727 GACCGCCATCCAAACAGGTT 60.894 55.000 0.00 0.00 39.02 3.50
41 42 1.303317 GACCGCCATCCAAACAGGT 60.303 57.895 0.00 0.00 39.02 4.00
42 43 0.680921 ATGACCGCCATCCAAACAGG 60.681 55.000 0.00 0.00 39.47 4.00
43 44 0.452987 CATGACCGCCATCCAAACAG 59.547 55.000 0.00 0.00 31.94 3.16
44 45 0.251121 ACATGACCGCCATCCAAACA 60.251 50.000 0.00 0.00 31.94 2.83
45 46 1.745232 TACATGACCGCCATCCAAAC 58.255 50.000 0.00 0.00 31.94 2.93
46 47 2.498644 TTACATGACCGCCATCCAAA 57.501 45.000 0.00 0.00 31.94 3.28
47 48 2.727123 ATTACATGACCGCCATCCAA 57.273 45.000 0.00 0.00 31.94 3.53
48 49 2.038426 CCTATTACATGACCGCCATCCA 59.962 50.000 0.00 0.00 31.94 3.41
49 50 2.301870 TCCTATTACATGACCGCCATCC 59.698 50.000 0.00 0.00 31.94 3.51
50 51 3.678056 TCCTATTACATGACCGCCATC 57.322 47.619 0.00 0.00 31.94 3.51
51 52 4.162320 CCTATCCTATTACATGACCGCCAT 59.838 45.833 0.00 0.00 35.44 4.40
52 53 3.513912 CCTATCCTATTACATGACCGCCA 59.486 47.826 0.00 0.00 0.00 5.69
53 54 3.679083 GCCTATCCTATTACATGACCGCC 60.679 52.174 0.00 0.00 0.00 6.13
54 55 3.056107 TGCCTATCCTATTACATGACCGC 60.056 47.826 0.00 0.00 0.00 5.68
55 56 4.801330 TGCCTATCCTATTACATGACCG 57.199 45.455 0.00 0.00 0.00 4.79
56 57 8.322091 ACTAATTGCCTATCCTATTACATGACC 58.678 37.037 0.00 0.00 0.00 4.02
57 58 9.726438 AACTAATTGCCTATCCTATTACATGAC 57.274 33.333 0.00 0.00 0.00 3.06
80 81 8.541234 GGCTGGCTAAATATAGATAGGTAAACT 58.459 37.037 0.00 0.00 0.00 2.66
81 82 7.491696 CGGCTGGCTAAATATAGATAGGTAAAC 59.508 40.741 0.00 0.00 0.00 2.01
82 83 7.364408 CCGGCTGGCTAAATATAGATAGGTAAA 60.364 40.741 0.00 0.00 0.00 2.01
83 84 6.097839 CCGGCTGGCTAAATATAGATAGGTAA 59.902 42.308 0.00 0.00 0.00 2.85
84 85 5.597182 CCGGCTGGCTAAATATAGATAGGTA 59.403 44.000 0.00 0.00 0.00 3.08
85 86 4.406003 CCGGCTGGCTAAATATAGATAGGT 59.594 45.833 0.00 0.00 0.00 3.08
86 87 4.406003 ACCGGCTGGCTAAATATAGATAGG 59.594 45.833 12.89 0.00 39.70 2.57
87 88 5.599999 ACCGGCTGGCTAAATATAGATAG 57.400 43.478 12.89 0.00 39.70 2.08
88 89 5.247564 ACAACCGGCTGGCTAAATATAGATA 59.752 40.000 12.89 0.00 39.70 1.98
89 90 4.041691 ACAACCGGCTGGCTAAATATAGAT 59.958 41.667 12.89 0.00 39.70 1.98
90 91 3.389983 ACAACCGGCTGGCTAAATATAGA 59.610 43.478 12.89 0.00 39.70 1.98
91 92 3.498397 CACAACCGGCTGGCTAAATATAG 59.502 47.826 12.89 0.00 39.70 1.31
92 93 3.472652 CACAACCGGCTGGCTAAATATA 58.527 45.455 12.89 0.00 39.70 0.86
93 94 2.297701 CACAACCGGCTGGCTAAATAT 58.702 47.619 12.89 0.00 39.70 1.28
94 95 1.680555 CCACAACCGGCTGGCTAAATA 60.681 52.381 12.89 0.00 39.70 1.40
95 96 0.965363 CCACAACCGGCTGGCTAAAT 60.965 55.000 12.89 0.00 39.70 1.40
96 97 1.602323 CCACAACCGGCTGGCTAAA 60.602 57.895 12.89 0.00 39.70 1.85
97 98 2.033448 CCACAACCGGCTGGCTAA 59.967 61.111 12.89 0.00 39.70 3.09
105 106 0.675522 ATAAAGGACGCCACAACCGG 60.676 55.000 0.00 0.00 0.00 5.28
106 107 1.161843 AATAAAGGACGCCACAACCG 58.838 50.000 0.00 0.00 0.00 4.44
107 108 2.924880 GCAAATAAAGGACGCCACAACC 60.925 50.000 0.00 0.00 0.00 3.77
108 109 2.324860 GCAAATAAAGGACGCCACAAC 58.675 47.619 0.00 0.00 0.00 3.32
109 110 1.271102 GGCAAATAAAGGACGCCACAA 59.729 47.619 0.00 0.00 42.50 3.33
110 111 0.885196 GGCAAATAAAGGACGCCACA 59.115 50.000 0.00 0.00 42.50 4.17
111 112 1.173913 AGGCAAATAAAGGACGCCAC 58.826 50.000 0.00 0.00 45.47 5.01
112 113 2.026636 ACTAGGCAAATAAAGGACGCCA 60.027 45.455 0.00 0.00 45.47 5.69
113 114 2.640184 ACTAGGCAAATAAAGGACGCC 58.360 47.619 0.00 0.00 43.31 5.68
114 115 4.082949 ACAAACTAGGCAAATAAAGGACGC 60.083 41.667 0.00 0.00 0.00 5.19
115 116 5.048991 ACACAAACTAGGCAAATAAAGGACG 60.049 40.000 0.00 0.00 0.00 4.79
116 117 6.327279 ACACAAACTAGGCAAATAAAGGAC 57.673 37.500 0.00 0.00 0.00 3.85
117 118 6.969993 AACACAAACTAGGCAAATAAAGGA 57.030 33.333 0.00 0.00 0.00 3.36
118 119 7.433680 AGAAACACAAACTAGGCAAATAAAGG 58.566 34.615 0.00 0.00 0.00 3.11
119 120 9.612620 CTAGAAACACAAACTAGGCAAATAAAG 57.387 33.333 0.00 0.00 32.59 1.85
120 121 8.079809 GCTAGAAACACAAACTAGGCAAATAAA 58.920 33.333 0.00 0.00 35.54 1.40
121 122 7.590279 GCTAGAAACACAAACTAGGCAAATAA 58.410 34.615 0.00 0.00 35.54 1.40
122 123 7.141100 GCTAGAAACACAAACTAGGCAAATA 57.859 36.000 0.00 0.00 35.54 1.40
123 124 6.013842 GCTAGAAACACAAACTAGGCAAAT 57.986 37.500 0.00 0.00 35.54 2.32
124 125 5.432885 GCTAGAAACACAAACTAGGCAAA 57.567 39.130 0.00 0.00 35.54 3.68
128 129 4.015872 TGGGCTAGAAACACAAACTAGG 57.984 45.455 0.00 0.00 35.54 3.02
129 130 6.575162 AAATGGGCTAGAAACACAAACTAG 57.425 37.500 0.00 0.00 37.32 2.57
130 131 6.239176 CCAAAATGGGCTAGAAACACAAACTA 60.239 38.462 0.00 0.00 32.67 2.24
131 132 5.453198 CCAAAATGGGCTAGAAACACAAACT 60.453 40.000 0.00 0.00 32.67 2.66
132 133 4.749598 CCAAAATGGGCTAGAAACACAAAC 59.250 41.667 0.00 0.00 32.67 2.93
133 134 4.954875 CCAAAATGGGCTAGAAACACAAA 58.045 39.130 0.00 0.00 32.67 2.83
134 135 4.599047 CCAAAATGGGCTAGAAACACAA 57.401 40.909 0.00 0.00 32.67 3.33
146 147 2.089980 CTCACTCAGAGCCAAAATGGG 58.910 52.381 0.00 0.00 38.19 4.00
181 182 7.056635 AGATCTCAAAGTCTCCAACTGAAAAA 58.943 34.615 0.00 0.00 38.58 1.94
182 183 6.595682 AGATCTCAAAGTCTCCAACTGAAAA 58.404 36.000 0.00 0.00 38.58 2.29
183 184 6.179906 AGATCTCAAAGTCTCCAACTGAAA 57.820 37.500 0.00 0.00 38.58 2.69
184 185 5.815233 AGATCTCAAAGTCTCCAACTGAA 57.185 39.130 0.00 0.00 38.58 3.02
185 186 5.070981 ACAAGATCTCAAAGTCTCCAACTGA 59.929 40.000 0.00 0.00 38.58 3.41
186 187 5.303971 ACAAGATCTCAAAGTCTCCAACTG 58.696 41.667 0.00 0.00 38.58 3.16
187 188 5.559148 ACAAGATCTCAAAGTCTCCAACT 57.441 39.130 0.00 0.00 41.10 3.16
188 189 5.049129 CCAACAAGATCTCAAAGTCTCCAAC 60.049 44.000 0.00 0.00 0.00 3.77
189 190 5.065914 CCAACAAGATCTCAAAGTCTCCAA 58.934 41.667 0.00 0.00 0.00 3.53
190 191 4.347876 TCCAACAAGATCTCAAAGTCTCCA 59.652 41.667 0.00 0.00 0.00 3.86
191 192 4.899502 TCCAACAAGATCTCAAAGTCTCC 58.100 43.478 0.00 0.00 0.00 3.71
192 193 5.180304 GGTTCCAACAAGATCTCAAAGTCTC 59.820 44.000 0.00 0.00 0.00 3.36
193 194 5.066593 GGTTCCAACAAGATCTCAAAGTCT 58.933 41.667 0.00 0.00 0.00 3.24
194 195 5.066593 AGGTTCCAACAAGATCTCAAAGTC 58.933 41.667 0.00 0.00 0.00 3.01
195 196 5.053978 AGGTTCCAACAAGATCTCAAAGT 57.946 39.130 0.00 0.00 0.00 2.66
196 197 7.693969 AATAGGTTCCAACAAGATCTCAAAG 57.306 36.000 0.00 0.00 0.00 2.77
197 198 9.753674 ATAAATAGGTTCCAACAAGATCTCAAA 57.246 29.630 0.00 0.00 0.00 2.69
198 199 9.753674 AATAAATAGGTTCCAACAAGATCTCAA 57.246 29.630 0.00 0.00 0.00 3.02
199 200 9.753674 AAATAAATAGGTTCCAACAAGATCTCA 57.246 29.630 0.00 0.00 0.00 3.27
201 202 8.971073 CCAAATAAATAGGTTCCAACAAGATCT 58.029 33.333 0.00 0.00 0.00 2.75
202 203 8.749354 ACCAAATAAATAGGTTCCAACAAGATC 58.251 33.333 0.00 0.00 29.58 2.75
203 204 8.664669 ACCAAATAAATAGGTTCCAACAAGAT 57.335 30.769 0.00 0.00 29.58 2.40
204 205 8.485578 AACCAAATAAATAGGTTCCAACAAGA 57.514 30.769 0.00 0.00 41.60 3.02
223 224 9.778741 TGCATACAACCATTTTATTAAACCAAA 57.221 25.926 0.00 0.00 0.00 3.28
224 225 9.950496 ATGCATACAACCATTTTATTAAACCAA 57.050 25.926 0.00 0.00 0.00 3.67
225 226 9.593134 GATGCATACAACCATTTTATTAAACCA 57.407 29.630 0.00 0.00 0.00 3.67
226 227 8.751335 CGATGCATACAACCATTTTATTAAACC 58.249 33.333 0.00 0.00 0.00 3.27
227 228 9.296400 ACGATGCATACAACCATTTTATTAAAC 57.704 29.630 0.00 0.00 0.00 2.01
228 229 9.862371 AACGATGCATACAACCATTTTATTAAA 57.138 25.926 0.00 0.00 0.00 1.52
229 230 9.509855 GAACGATGCATACAACCATTTTATTAA 57.490 29.630 0.00 0.00 0.00 1.40
230 231 8.898761 AGAACGATGCATACAACCATTTTATTA 58.101 29.630 0.00 0.00 0.00 0.98
231 232 7.701924 CAGAACGATGCATACAACCATTTTATT 59.298 33.333 0.00 0.00 0.00 1.40
232 233 7.066887 TCAGAACGATGCATACAACCATTTTAT 59.933 33.333 0.00 0.00 0.00 1.40
233 234 6.372937 TCAGAACGATGCATACAACCATTTTA 59.627 34.615 0.00 0.00 0.00 1.52
234 235 5.182950 TCAGAACGATGCATACAACCATTTT 59.817 36.000 0.00 0.00 0.00 1.82
235 236 4.699735 TCAGAACGATGCATACAACCATTT 59.300 37.500 0.00 0.00 0.00 2.32
236 237 4.260985 TCAGAACGATGCATACAACCATT 58.739 39.130 0.00 0.00 0.00 3.16
237 238 3.872696 TCAGAACGATGCATACAACCAT 58.127 40.909 0.00 0.00 0.00 3.55
238 239 3.326836 TCAGAACGATGCATACAACCA 57.673 42.857 0.00 0.00 0.00 3.67
239 240 4.201208 CATCAGAACGATGCATACAACC 57.799 45.455 0.00 0.00 44.95 3.77
249 250 0.179062 GGCCTCTGCATCAGAACGAT 60.179 55.000 0.00 0.00 40.18 3.73
250 251 1.219124 GGCCTCTGCATCAGAACGA 59.781 57.895 0.00 0.00 40.18 3.85
251 252 2.169789 CGGCCTCTGCATCAGAACG 61.170 63.158 0.00 0.63 40.18 3.95
252 253 1.817099 CCGGCCTCTGCATCAGAAC 60.817 63.158 0.00 0.00 40.18 3.01
253 254 2.586245 CCGGCCTCTGCATCAGAA 59.414 61.111 0.00 0.00 40.18 3.02
254 255 3.473647 CCCGGCCTCTGCATCAGA 61.474 66.667 0.00 0.00 38.25 3.27
255 256 2.937379 CTTCCCGGCCTCTGCATCAG 62.937 65.000 0.00 0.00 40.13 2.90
256 257 3.008517 TTCCCGGCCTCTGCATCA 61.009 61.111 0.00 0.00 40.13 3.07
257 258 2.049627 ATCTTCCCGGCCTCTGCATC 62.050 60.000 0.00 0.00 40.13 3.91
258 259 2.049627 GATCTTCCCGGCCTCTGCAT 62.050 60.000 0.00 0.00 40.13 3.96
259 260 2.688666 ATCTTCCCGGCCTCTGCA 60.689 61.111 0.00 0.00 40.13 4.41
260 261 2.110006 GATCTTCCCGGCCTCTGC 59.890 66.667 0.00 0.00 0.00 4.26
261 262 2.825264 GGATCTTCCCGGCCTCTG 59.175 66.667 0.00 0.00 0.00 3.35
269 270 5.306937 TTTTTCTCAAAAAGGGGATCTTCCC 59.693 40.000 3.84 3.84 44.21 3.97
270 271 6.419484 TTTTTCTCAAAAAGGGGATCTTCC 57.581 37.500 0.00 0.00 35.84 3.46
292 293 7.219535 CACATGTCGCGTACTAGTATACTTTTT 59.780 37.037 11.40 0.00 0.00 1.94
293 294 6.690098 CACATGTCGCGTACTAGTATACTTTT 59.310 38.462 11.40 0.91 0.00 2.27
294 295 6.197276 CACATGTCGCGTACTAGTATACTTT 58.803 40.000 11.40 1.28 0.00 2.66
295 296 5.745514 CACATGTCGCGTACTAGTATACTT 58.254 41.667 11.40 0.00 0.00 2.24
296 297 4.319333 GCACATGTCGCGTACTAGTATACT 60.319 45.833 10.87 10.87 0.00 2.12
297 298 3.904824 GCACATGTCGCGTACTAGTATAC 59.095 47.826 5.77 0.00 0.00 1.47
321 322 5.344665 CGTTTCATTTTTCCATAACGTGCAT 59.655 36.000 0.00 0.00 35.11 3.96
332 333 3.378911 TCTTGCCCGTTTCATTTTTCC 57.621 42.857 0.00 0.00 0.00 3.13
340 341 8.175716 GCAGTATATAATATTCTTGCCCGTTTC 58.824 37.037 0.00 0.00 0.00 2.78
344 345 7.792374 ATGCAGTATATAATATTCTTGCCCG 57.208 36.000 0.00 0.00 0.00 6.13
359 360 9.302345 GCTAATCGCTCTTTATTATGCAGTATA 57.698 33.333 0.00 0.00 35.14 1.47
431 432 5.365403 TTCAGTGAAAACAACAAAGACGT 57.635 34.783 2.20 0.00 0.00 4.34
434 435 9.487790 AAAGAAATTCAGTGAAAACAACAAAGA 57.512 25.926 10.14 0.00 0.00 2.52
486 487 4.957296 ACTACCAATAGATAAACGCCCTG 58.043 43.478 0.00 0.00 32.23 4.45
491 492 9.153721 TGGTTACAAACTACCAATAGATAAACG 57.846 33.333 0.00 0.00 41.30 3.60
663 668 8.621286 CGTTTTCTTATTTACATGATTAGCCCT 58.379 33.333 0.00 0.00 0.00 5.19
684 689 6.756299 TGTAACCCTTTGTAAGAACGTTTT 57.244 33.333 0.46 0.00 0.00 2.43
750 755 8.588290 ACAAATGAAATAATGTAGCACCCTTA 57.412 30.769 0.00 0.00 0.00 2.69
752 757 7.480760 AACAAATGAAATAATGTAGCACCCT 57.519 32.000 0.00 0.00 0.00 4.34
753 758 8.546597 AAAACAAATGAAATAATGTAGCACCC 57.453 30.769 0.00 0.00 0.00 4.61
769 774 6.840780 ATCCTGACCCTTCTAAAACAAATG 57.159 37.500 0.00 0.00 0.00 2.32
774 779 5.648526 GGAAGAATCCTGACCCTTCTAAAAC 59.351 44.000 0.00 0.00 42.93 2.43
775 780 5.312178 TGGAAGAATCCTGACCCTTCTAAAA 59.688 40.000 0.00 0.00 46.70 1.52
799 804 4.849235 TGGGCCCTCCAAAGAAATTTAAAT 59.151 37.500 25.70 0.00 43.84 1.40
800 805 4.235372 TGGGCCCTCCAAAGAAATTTAAA 58.765 39.130 25.70 0.00 43.84 1.52
801 806 3.863086 TGGGCCCTCCAAAGAAATTTAA 58.137 40.909 25.70 0.00 43.84 1.52
802 807 3.551635 TGGGCCCTCCAAAGAAATTTA 57.448 42.857 25.70 0.00 43.84 1.40
803 808 2.414250 TGGGCCCTCCAAAGAAATTT 57.586 45.000 25.70 0.00 43.84 1.82
820 825 8.851145 AGACTACTACATACAGTACATGATTGG 58.149 37.037 0.00 0.00 0.00 3.16
836 841 1.284198 AGAGCCGGGAAGACTACTACA 59.716 52.381 2.18 0.00 0.00 2.74
880 885 3.733960 GAAAACGACCTGGCCCGC 61.734 66.667 0.00 0.00 0.00 6.13
882 887 1.037493 AAAAGAAAACGACCTGGCCC 58.963 50.000 0.00 0.00 0.00 5.80
884 889 3.974871 TGTAAAAGAAAACGACCTGGC 57.025 42.857 0.00 0.00 0.00 4.85
911 916 3.126831 GCAGGAGTCAAGAACGATATGG 58.873 50.000 0.00 0.00 0.00 2.74
915 920 2.300152 TGAAGCAGGAGTCAAGAACGAT 59.700 45.455 0.00 0.00 0.00 3.73
934 939 5.018149 TGATTTTGCCTCTTCATTGGATGA 58.982 37.500 0.00 0.00 37.55 2.92
941 946 3.773119 AGCCATTGATTTTGCCTCTTCAT 59.227 39.130 0.00 0.00 0.00 2.57
985 990 2.042831 GCATGGTGAGGCTGGTGAC 61.043 63.158 0.00 0.00 0.00 3.67
986 991 2.352422 GCATGGTGAGGCTGGTGA 59.648 61.111 0.00 0.00 0.00 4.02
987 992 2.753043 GGCATGGTGAGGCTGGTG 60.753 66.667 0.00 0.00 0.00 4.17
988 993 2.937689 AGGCATGGTGAGGCTGGT 60.938 61.111 0.00 0.00 40.72 4.00
989 994 2.124403 GAGGCATGGTGAGGCTGG 60.124 66.667 0.00 0.00 42.47 4.85
990 995 2.124403 GGAGGCATGGTGAGGCTG 60.124 66.667 0.00 0.00 42.47 4.85
991 996 1.927527 AAGGAGGCATGGTGAGGCT 60.928 57.895 0.00 0.00 45.38 4.58
992 997 1.751927 CAAGGAGGCATGGTGAGGC 60.752 63.158 0.00 0.00 0.00 4.70
993 998 1.751927 GCAAGGAGGCATGGTGAGG 60.752 63.158 0.00 0.00 0.00 3.86
994 999 0.747283 GAGCAAGGAGGCATGGTGAG 60.747 60.000 0.00 0.00 35.83 3.51
995 1000 1.300963 GAGCAAGGAGGCATGGTGA 59.699 57.895 0.00 0.00 35.83 4.02
996 1001 1.751927 GGAGCAAGGAGGCATGGTG 60.752 63.158 0.00 0.00 35.83 4.17
997 1002 2.207501 CTGGAGCAAGGAGGCATGGT 62.208 60.000 0.00 0.00 35.83 3.55
998 1003 1.453379 CTGGAGCAAGGAGGCATGG 60.453 63.158 0.00 0.00 35.83 3.66
999 1004 0.747283 GACTGGAGCAAGGAGGCATG 60.747 60.000 0.00 0.00 35.83 4.06
1000 1005 0.913451 AGACTGGAGCAAGGAGGCAT 60.913 55.000 0.00 0.00 35.83 4.40
1001 1006 1.130054 AAGACTGGAGCAAGGAGGCA 61.130 55.000 0.00 0.00 35.83 4.75
1002 1007 0.392327 GAAGACTGGAGCAAGGAGGC 60.392 60.000 0.00 0.00 0.00 4.70
1003 1008 1.066286 CAGAAGACTGGAGCAAGGAGG 60.066 57.143 0.00 0.00 40.14 4.30
1004 1009 1.675415 GCAGAAGACTGGAGCAAGGAG 60.675 57.143 0.00 0.00 43.62 3.69
1031 1036 4.681978 ACGGCGGAAGTGAGGCAC 62.682 66.667 13.24 0.00 34.10 5.01
1038 1043 1.693627 AGATGATAGACGGCGGAAGT 58.306 50.000 13.24 0.00 0.00 3.01
1044 1049 1.132588 GCACGAAGATGATAGACGGC 58.867 55.000 0.00 0.00 0.00 5.68
1051 1056 0.032678 CGCCCTAGCACGAAGATGAT 59.967 55.000 0.00 0.00 39.83 2.45
1071 1076 0.987294 CTGTGGGAGTGTGAGGGAAT 59.013 55.000 0.00 0.00 0.00 3.01
1092 1097 2.299521 CTGAGGGGAAGAGTAGTACGG 58.700 57.143 0.00 0.00 0.00 4.02
1100 1105 0.911525 TTCCAGGCTGAGGGGAAGAG 60.912 60.000 17.94 0.00 35.84 2.85
1107 1112 1.301293 GGGTCTTTCCAGGCTGAGG 59.699 63.158 17.94 0.00 38.11 3.86
1111 1116 0.040204 CCAATGGGTCTTTCCAGGCT 59.960 55.000 0.00 0.00 40.56 4.58
1112 1117 0.972471 CCCAATGGGTCTTTCCAGGC 60.972 60.000 10.91 0.00 40.56 4.85
1131 1148 4.035102 AACTTCTGCCCCCTCGCC 62.035 66.667 0.00 0.00 0.00 5.54
1166 1183 2.604614 GGTGCCTTGAAGCAGTTAAACG 60.605 50.000 0.00 0.00 45.14 3.60
1173 1190 1.165907 TTCGTGGTGCCTTGAAGCAG 61.166 55.000 0.00 0.00 45.14 4.24
1191 1208 1.632589 GACCCCATTTCTTGCCACTT 58.367 50.000 0.00 0.00 0.00 3.16
1196 1213 1.508088 CAGCGACCCCATTTCTTGC 59.492 57.895 0.00 0.00 0.00 4.01
1207 1224 2.363147 ACCCTCTCTCCAGCGACC 60.363 66.667 0.00 0.00 0.00 4.79
1236 1253 0.239347 CTGCTCCAGCGAAAACTTGG 59.761 55.000 0.00 0.00 45.83 3.61
1237 1254 3.761481 CTGCTCCAGCGAAAACTTG 57.239 52.632 0.00 0.00 45.83 3.16
1255 1272 4.309933 CACCTTCCAATTTCCTTCTTTGC 58.690 43.478 0.00 0.00 0.00 3.68
1256 1273 4.039609 AGCACCTTCCAATTTCCTTCTTTG 59.960 41.667 0.00 0.00 0.00 2.77
1285 1302 0.034574 TGCACCACGATGGCCTAAAT 60.035 50.000 3.32 0.00 42.67 1.40
1294 1311 4.037923 AGTGAGAAAATTTTGCACCACGAT 59.962 37.500 21.10 7.61 0.00 3.73
1299 1316 3.721035 AGCAGTGAGAAAATTTTGCACC 58.279 40.909 21.10 12.28 34.17 5.01
1314 1331 2.861360 GCAGCAGGAAAGAAAAGCAGTG 60.861 50.000 0.00 0.00 0.00 3.66
1316 1333 1.338973 TGCAGCAGGAAAGAAAAGCAG 59.661 47.619 0.00 0.00 0.00 4.24
1366 1383 6.464222 TGCTACAAATGCTAGAGTAACTGTT 58.536 36.000 0.00 0.00 0.00 3.16
1427 1444 9.420118 TGTGAAATTAGCAGGGATATTACATTT 57.580 29.630 0.00 0.00 0.00 2.32
1428 1445 8.995027 TGTGAAATTAGCAGGGATATTACATT 57.005 30.769 0.00 0.00 0.00 2.71
1430 1447 9.725019 CTATGTGAAATTAGCAGGGATATTACA 57.275 33.333 0.00 0.00 0.00 2.41
1431 1448 9.944376 TCTATGTGAAATTAGCAGGGATATTAC 57.056 33.333 0.00 0.00 0.00 1.89
1440 1457 5.352284 ACTCGGTCTATGTGAAATTAGCAG 58.648 41.667 0.00 0.00 0.00 4.24
1442 1459 5.006746 CCAACTCGGTCTATGTGAAATTAGC 59.993 44.000 0.00 0.00 0.00 3.09
1450 1467 1.927895 GAGCCAACTCGGTCTATGTG 58.072 55.000 0.00 0.00 36.97 3.21
1470 1487 0.601046 GCCTGCAAAAGCAAGAACCC 60.601 55.000 0.00 0.00 0.00 4.11
1479 1496 1.470285 CCATTGATCCGCCTGCAAAAG 60.470 52.381 0.00 0.00 0.00 2.27
1485 1502 4.339247 ACTTAAAATCCATTGATCCGCCTG 59.661 41.667 0.00 0.00 0.00 4.85
1490 1507 9.956720 CATACTGAACTTAAAATCCATTGATCC 57.043 33.333 0.00 0.00 0.00 3.36
1504 1521 6.270000 CCATCCCACTATCCATACTGAACTTA 59.730 42.308 0.00 0.00 0.00 2.24
1565 1582 3.474570 AGATGCAGAGACCGGGGC 61.475 66.667 6.32 0.00 0.00 5.80
1585 1602 4.617253 ATAAAGTGGCCGTATGCATCTA 57.383 40.909 0.19 0.00 43.89 1.98
1614 1631 5.997384 AATACTTTGTAAGGTCCTCGAGT 57.003 39.130 12.31 0.00 0.00 4.18
1648 1665 6.312141 TGTTACCAAGATGATGGATTCAGA 57.688 37.500 0.00 0.00 43.54 3.27
1667 1684 4.401519 GGATAGGAGTAGCGGCATATGTTA 59.598 45.833 1.45 0.00 0.00 2.41
1760 1777 1.990060 AGTATGTGGCTCGGCTGGT 60.990 57.895 0.00 0.00 0.00 4.00
1778 1795 2.359850 GATTGTGCCGCAGACCCA 60.360 61.111 0.00 0.00 0.00 4.51
1836 1853 4.649218 TCAATATGATCTGAAGACGGACCA 59.351 41.667 0.00 0.00 33.97 4.02
1895 1912 2.358615 TGTCTGGCGTCATGGTGC 60.359 61.111 0.00 0.00 0.00 5.01
1965 1984 2.899838 GTTATCGGCGGCATGGCA 60.900 61.111 20.37 0.00 45.16 4.92
2040 2062 1.570803 CTGGGGGCATCATTTTGGAA 58.429 50.000 0.00 0.00 0.00 3.53
2048 2070 1.145900 TTTCCTTCCTGGGGGCATCA 61.146 55.000 0.00 0.00 36.20 3.07
2062 2084 6.543465 TGATGATGACATTTTATCGCTTTCCT 59.457 34.615 0.00 0.00 36.82 3.36
2077 2099 3.233507 TCTGGATCGGATGATGATGACA 58.766 45.455 0.00 0.00 34.09 3.58
2123 2146 0.183014 CATCAGGCTTGGGATGCTCT 59.817 55.000 0.00 0.00 35.03 4.09
2224 2247 2.094545 GGAGCAACTGCCGATGAAAATT 60.095 45.455 0.00 0.00 43.38 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.