Multiple sequence alignment - TraesCS1A01G038600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G038600 chr1A 100.000 2220 0 0 1 2220 21074646 21076865 0.000000e+00 4100.0
1 TraesCS1A01G038600 chr1A 100.000 642 0 0 2310 2951 21076955 21077596 0.000000e+00 1186.0
2 TraesCS1A01G038600 chr1A 85.542 83 9 2 555 634 21059452 21059534 1.880000e-12 84.2
3 TraesCS1A01G038600 chr1A 86.792 53 3 4 509 560 65807655 65807606 4.110000e-04 56.5
4 TraesCS1A01G038600 chr1D 95.635 2222 70 10 1 2220 19340324 19342520 0.000000e+00 3541.0
5 TraesCS1A01G038600 chr1D 83.664 1359 200 11 871 2220 486116065 486117410 0.000000e+00 1260.0
6 TraesCS1A01G038600 chr1D 83.117 616 83 13 2310 2925 19342522 19343116 2.590000e-150 542.0
7 TraesCS1A01G038600 chr1D 80.837 621 87 17 2310 2928 19808521 19809111 2.680000e-125 459.0
8 TraesCS1A01G038600 chr1D 94.595 37 2 0 438 474 397213446 397213410 1.140000e-04 58.4
9 TraesCS1A01G038600 chr1B 92.587 1268 91 2 953 2220 29898349 29899613 0.000000e+00 1818.0
10 TraesCS1A01G038600 chr1B 90.210 1236 113 7 988 2220 29823970 29825200 0.000000e+00 1605.0
11 TraesCS1A01G038600 chr1B 86.062 1234 160 7 993 2220 676949923 676951150 0.000000e+00 1315.0
12 TraesCS1A01G038600 chr1B 86.409 1192 155 4 993 2180 676810191 676811379 0.000000e+00 1297.0
13 TraesCS1A01G038600 chr1B 92.056 642 45 5 2310 2951 29899615 29900250 0.000000e+00 898.0
14 TraesCS1A01G038600 chr1B 83.388 614 81 10 2310 2923 29825202 29825794 1.550000e-152 549.0
15 TraesCS1A01G038600 chr1B 81.656 616 88 15 2310 2923 29086250 29086842 3.420000e-134 488.0
16 TraesCS1A01G038600 chr1B 80.452 619 94 18 2310 2925 676811421 676812015 5.800000e-122 448.0
17 TraesCS1A01G038600 chr1B 80.097 618 101 18 2310 2925 676951152 676951749 9.710000e-120 440.0
18 TraesCS1A01G038600 chr1B 81.250 544 79 14 2310 2852 31126460 31126981 4.550000e-113 418.0
19 TraesCS1A01G038600 chrUn 92.462 1247 91 2 974 2220 116819386 116820629 0.000000e+00 1779.0
20 TraesCS1A01G038600 chrUn 92.732 1142 81 1 1079 2220 180337352 180338491 0.000000e+00 1648.0
21 TraesCS1A01G038600 chrUn 85.182 1235 170 8 993 2220 116836679 116837907 0.000000e+00 1254.0
22 TraesCS1A01G038600 chrUn 91.900 642 46 5 2310 2951 180338493 180339128 0.000000e+00 893.0
23 TraesCS1A01G038600 chrUn 81.951 615 90 11 2310 2924 116820631 116821224 4.390000e-138 501.0
24 TraesCS1A01G038600 chrUn 80.325 615 93 16 2310 2922 116837909 116838497 9.710000e-120 440.0
25 TraesCS1A01G038600 chr7B 83.673 98 15 1 2337 2434 714329531 714329435 1.130000e-14 91.6
26 TraesCS1A01G038600 chr5D 95.238 42 2 0 516 557 5570564 5570605 1.900000e-07 67.6
27 TraesCS1A01G038600 chr7A 97.222 36 1 0 435 470 188571880 188571845 8.830000e-06 62.1
28 TraesCS1A01G038600 chr6B 94.595 37 2 0 435 471 78290986 78290950 1.140000e-04 58.4
29 TraesCS1A01G038600 chr6B 94.595 37 2 0 435 471 78336430 78336394 1.140000e-04 58.4
30 TraesCS1A01G038600 chr6A 90.698 43 4 0 434 476 605120013 605119971 1.140000e-04 58.4
31 TraesCS1A01G038600 chr6A 94.444 36 2 0 439 474 593436662 593436697 4.110000e-04 56.5
32 TraesCS1A01G038600 chr5B 92.500 40 2 1 427 466 243983483 243983521 4.110000e-04 56.5
33 TraesCS1A01G038600 chr4B 94.444 36 1 1 432 467 628706251 628706285 1.000000e-03 54.7
34 TraesCS1A01G038600 chr3D 92.308 39 2 1 513 551 125495570 125495607 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G038600 chr1A 21074646 21077596 2950 False 2643.0 4100 100.0000 1 2951 2 chr1A.!!$F2 2950
1 TraesCS1A01G038600 chr1D 19340324 19343116 2792 False 2041.5 3541 89.3760 1 2925 2 chr1D.!!$F3 2924
2 TraesCS1A01G038600 chr1D 486116065 486117410 1345 False 1260.0 1260 83.6640 871 2220 1 chr1D.!!$F2 1349
3 TraesCS1A01G038600 chr1D 19808521 19809111 590 False 459.0 459 80.8370 2310 2928 1 chr1D.!!$F1 618
4 TraesCS1A01G038600 chr1B 29898349 29900250 1901 False 1358.0 1818 92.3215 953 2951 2 chr1B.!!$F4 1998
5 TraesCS1A01G038600 chr1B 29823970 29825794 1824 False 1077.0 1605 86.7990 988 2923 2 chr1B.!!$F3 1935
6 TraesCS1A01G038600 chr1B 676949923 676951749 1826 False 877.5 1315 83.0795 993 2925 2 chr1B.!!$F6 1932
7 TraesCS1A01G038600 chr1B 676810191 676812015 1824 False 872.5 1297 83.4305 993 2925 2 chr1B.!!$F5 1932
8 TraesCS1A01G038600 chr1B 29086250 29086842 592 False 488.0 488 81.6560 2310 2923 1 chr1B.!!$F1 613
9 TraesCS1A01G038600 chr1B 31126460 31126981 521 False 418.0 418 81.2500 2310 2852 1 chr1B.!!$F2 542
10 TraesCS1A01G038600 chrUn 180337352 180339128 1776 False 1270.5 1648 92.3160 1079 2951 2 chrUn.!!$F3 1872
11 TraesCS1A01G038600 chrUn 116819386 116821224 1838 False 1140.0 1779 87.2065 974 2924 2 chrUn.!!$F1 1950
12 TraesCS1A01G038600 chrUn 116836679 116838497 1818 False 847.0 1254 82.7535 993 2922 2 chrUn.!!$F2 1929

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
212 213 1.072331 ACTGCCCACGAGATGAAAACT 59.928 47.619 0.0 0.0 0.0 2.66 F
1026 1036 2.228059 GAGTATGTAGTCAGGCCGCTA 58.772 52.381 0.0 0.0 0.0 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1272 1282 1.140312 AGTGTCCCTTCTTCTTGGCA 58.860 50.0 0.00 0.0 0.00 4.92 R
2829 2860 0.524816 GTTGCAATGCTCGCAGATGG 60.525 55.0 6.82 0.0 41.18 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
137 138 1.342174 AGGTCGTCGCTCAAGGTAAAA 59.658 47.619 0.00 0.00 0.00 1.52
138 139 2.028385 AGGTCGTCGCTCAAGGTAAAAT 60.028 45.455 0.00 0.00 0.00 1.82
139 140 2.740447 GGTCGTCGCTCAAGGTAAAATT 59.260 45.455 0.00 0.00 0.00 1.82
140 141 3.424433 GGTCGTCGCTCAAGGTAAAATTG 60.424 47.826 0.00 0.00 0.00 2.32
141 142 3.430895 GTCGTCGCTCAAGGTAAAATTGA 59.569 43.478 0.00 0.00 35.45 2.57
151 152 6.754193 TCAAGGTAAAATTGATTTCACCCAC 58.246 36.000 5.36 0.00 31.86 4.61
163 164 4.336889 TTTCACCCACGATGATCCTATC 57.663 45.455 0.00 0.00 0.00 2.08
212 213 1.072331 ACTGCCCACGAGATGAAAACT 59.928 47.619 0.00 0.00 0.00 2.66
302 305 7.652524 TTACTGCTCATATTCAGTCTCTTCT 57.347 36.000 5.57 0.00 42.06 2.85
377 380 4.345547 TCGATATGGGCACAAGTTATACCA 59.654 41.667 0.00 0.00 0.00 3.25
381 384 3.681593 TGGGCACAAGTTATACCAAGTC 58.318 45.455 0.00 0.00 0.00 3.01
402 405 4.214971 GTCATGAGCAAGTGAAGTCATTGT 59.785 41.667 0.00 0.00 0.00 2.71
452 455 7.848821 TCTATTATACTACTCCCTCCATCCT 57.151 40.000 0.00 0.00 0.00 3.24
461 464 7.140304 ACTACTCCCTCCATCCTAAAATAAGT 58.860 38.462 0.00 0.00 0.00 2.24
462 465 6.253946 ACTCCCTCCATCCTAAAATAAGTG 57.746 41.667 0.00 0.00 0.00 3.16
463 466 5.731678 ACTCCCTCCATCCTAAAATAAGTGT 59.268 40.000 0.00 0.00 0.00 3.55
464 467 6.126739 ACTCCCTCCATCCTAAAATAAGTGTC 60.127 42.308 0.00 0.00 0.00 3.67
465 468 5.970640 TCCCTCCATCCTAAAATAAGTGTCT 59.029 40.000 0.00 0.00 0.00 3.41
466 469 6.447084 TCCCTCCATCCTAAAATAAGTGTCTT 59.553 38.462 0.00 0.00 0.00 3.01
467 470 7.036863 TCCCTCCATCCTAAAATAAGTGTCTTT 60.037 37.037 0.00 0.00 0.00 2.52
468 471 7.067494 CCCTCCATCCTAAAATAAGTGTCTTTG 59.933 40.741 0.00 0.00 0.00 2.77
469 472 7.829211 CCTCCATCCTAAAATAAGTGTCTTTGA 59.171 37.037 0.00 0.00 0.00 2.69
470 473 9.401058 CTCCATCCTAAAATAAGTGTCTTTGAT 57.599 33.333 0.00 0.00 0.00 2.57
471 474 9.753674 TCCATCCTAAAATAAGTGTCTTTGATT 57.246 29.630 0.00 0.00 0.00 2.57
546 549 8.731275 TCAAAGACACTTATTTTGAGACTGAA 57.269 30.769 0.00 0.00 36.28 3.02
559 562 6.576662 TTGAGACTGAAGGAGTAGTACTTG 57.423 41.667 0.00 0.00 33.83 3.16
622 625 9.489084 GCACAGATGTTATTATATGGTTAGTCA 57.511 33.333 0.00 0.00 0.00 3.41
706 709 4.749099 GTCCAATCATACTGCTCATGAGAC 59.251 45.833 27.04 17.11 35.93 3.36
721 724 9.399797 TGCTCATGAGACAAAAATCATATAAGT 57.600 29.630 27.04 0.00 34.42 2.24
790 793 4.701956 AACGGCAATACCAATCTCAAAG 57.298 40.909 0.00 0.00 39.03 2.77
792 795 4.079253 ACGGCAATACCAATCTCAAAGTT 58.921 39.130 0.00 0.00 39.03 2.66
811 814 6.930068 AAGTTGCTACCTCTTAACCTCTTA 57.070 37.500 0.00 0.00 0.00 2.10
1026 1036 2.228059 GAGTATGTAGTCAGGCCGCTA 58.772 52.381 0.00 0.00 0.00 4.26
1784 1797 2.299326 AAGGCATTGCAGAACCTTCT 57.701 45.000 11.39 0.00 38.07 2.85
1818 1831 4.407296 AGTGGGAAGAGATACCTCATTGTC 59.593 45.833 0.00 0.00 41.87 3.18
1844 1857 6.844829 TGGATGATGTATGGAATGAAGATGT 58.155 36.000 0.00 0.00 0.00 3.06
1949 1962 8.397906 GCAAGTAGCACAAATTATGAAGATGTA 58.602 33.333 0.00 0.00 44.79 2.29
1950 1963 9.926751 CAAGTAGCACAAATTATGAAGATGTAG 57.073 33.333 0.00 0.00 0.00 2.74
2161 2180 1.098050 AGCATGAAAGAATGGACGGC 58.902 50.000 0.00 0.00 0.00 5.68
2343 2362 5.301551 TGACTTGCCATTACACTTGAAACAT 59.698 36.000 0.00 0.00 0.00 2.71
2522 2541 6.998074 TCATTCTTTCAAGAGGTCAAGCTAAA 59.002 34.615 0.00 0.00 36.22 1.85
2528 2547 0.992695 GAGGTCAAGCTAAACCCCCT 59.007 55.000 12.61 1.13 36.11 4.79
2531 2553 2.990998 AGGTCAAGCTAAACCCCCTAAA 59.009 45.455 12.61 0.00 36.11 1.85
2533 2555 3.508793 GGTCAAGCTAAACCCCCTAAAAC 59.491 47.826 6.22 0.00 0.00 2.43
2534 2556 4.404640 GTCAAGCTAAACCCCCTAAAACT 58.595 43.478 0.00 0.00 0.00 2.66
2538 2560 5.270979 AGCTAAACCCCCTAAAACTGAAT 57.729 39.130 0.00 0.00 0.00 2.57
2539 2561 5.262009 AGCTAAACCCCCTAAAACTGAATC 58.738 41.667 0.00 0.00 0.00 2.52
2541 2563 5.125578 GCTAAACCCCCTAAAACTGAATCTG 59.874 44.000 0.00 0.00 0.00 2.90
2542 2564 5.333566 AAACCCCCTAAAACTGAATCTGA 57.666 39.130 0.00 0.00 0.00 3.27
2543 2565 5.333566 AACCCCCTAAAACTGAATCTGAA 57.666 39.130 0.00 0.00 0.00 3.02
2544 2566 5.536497 ACCCCCTAAAACTGAATCTGAAT 57.464 39.130 0.00 0.00 0.00 2.57
2552 2574 9.859427 CCTAAAACTGAATCTGAATGCAAAATA 57.141 29.630 0.00 0.00 0.00 1.40
2667 2698 8.275040 ACTATAGTTGACAGGCCTAATGAAAAT 58.725 33.333 3.98 0.00 0.00 1.82
2668 2699 5.904362 AGTTGACAGGCCTAATGAAAATC 57.096 39.130 3.98 0.00 0.00 2.17
2713 2744 5.069119 ACTCGCCACTTGTTCTCATCATATA 59.931 40.000 0.00 0.00 0.00 0.86
2811 2842 2.597805 ACTCGTGGCTCGACACCT 60.598 61.111 7.67 0.00 44.01 4.00
2829 2860 2.744202 ACCTCATTTGTCGAATCACAGC 59.256 45.455 0.00 0.00 0.00 4.40
2857 2888 3.231965 CGAGCATTGCAACTCTTTCAAG 58.768 45.455 11.91 0.00 0.00 3.02
2870 2901 5.443185 CTCTTTCAAGAGTGCAAATGGAA 57.557 39.130 8.23 0.00 45.84 3.53
2879 2910 1.872952 GTGCAAATGGAAAAAGGCACC 59.127 47.619 0.00 0.00 44.20 5.01
2926 2957 6.873076 CCTGAGGTATCTTGATATCTCAAAGC 59.127 42.308 24.90 7.12 41.98 3.51
2931 2962 6.939163 GGTATCTTGATATCTCAAAGCACCAT 59.061 38.462 3.98 0.00 40.78 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 3.071312 AGAGCTATGCAGAGGAGAAATGG 59.929 47.826 10.92 0.0 0.00 3.16
137 138 3.885297 GGATCATCGTGGGTGAAATCAAT 59.115 43.478 0.00 0.0 0.00 2.57
138 139 3.054434 AGGATCATCGTGGGTGAAATCAA 60.054 43.478 0.00 0.0 0.00 2.57
139 140 2.505407 AGGATCATCGTGGGTGAAATCA 59.495 45.455 0.00 0.0 0.00 2.57
140 141 3.199880 AGGATCATCGTGGGTGAAATC 57.800 47.619 0.00 0.0 0.00 2.17
141 142 4.561530 CGATAGGATCATCGTGGGTGAAAT 60.562 45.833 7.16 0.0 42.22 2.17
212 213 3.116096 ACATAGAGAGTGGTGGCCTAA 57.884 47.619 3.32 0.0 0.00 2.69
377 380 4.077300 TGACTTCACTTGCTCATGACTT 57.923 40.909 0.00 0.0 0.00 3.01
381 384 4.023450 ACACAATGACTTCACTTGCTCATG 60.023 41.667 0.00 0.0 0.00 3.07
414 417 7.736447 AGTATAATAGATGCCTTTTGTCTGC 57.264 36.000 0.00 0.0 0.00 4.26
425 428 7.014808 GGATGGAGGGAGTAGTATAATAGATGC 59.985 44.444 0.00 0.0 0.00 3.91
461 464 7.768582 TCAAAGACACTGACTAAATCAAAGACA 59.231 33.333 0.00 0.0 36.69 3.41
462 465 8.142994 TCAAAGACACTGACTAAATCAAAGAC 57.857 34.615 0.00 0.0 36.69 3.01
463 466 8.908786 ATCAAAGACACTGACTAAATCAAAGA 57.091 30.769 0.00 0.0 36.69 2.52
464 467 9.956720 AAATCAAAGACACTGACTAAATCAAAG 57.043 29.630 0.00 0.0 36.69 2.77
467 470 9.778741 ACTAAATCAAAGACACTGACTAAATCA 57.221 29.630 0.00 0.0 35.45 2.57
471 474 9.692749 CTGTACTAAATCAAAGACACTGACTAA 57.307 33.333 0.00 0.0 0.00 2.24
472 475 7.813148 GCTGTACTAAATCAAAGACACTGACTA 59.187 37.037 0.00 0.0 0.00 2.59
473 476 6.647067 GCTGTACTAAATCAAAGACACTGACT 59.353 38.462 0.00 0.0 0.00 3.41
474 477 6.647067 AGCTGTACTAAATCAAAGACACTGAC 59.353 38.462 0.00 0.0 0.00 3.51
475 478 6.759272 AGCTGTACTAAATCAAAGACACTGA 58.241 36.000 0.00 0.0 0.00 3.41
476 479 7.426929 AAGCTGTACTAAATCAAAGACACTG 57.573 36.000 0.00 0.0 0.00 3.66
477 480 7.499232 ACAAAGCTGTACTAAATCAAAGACACT 59.501 33.333 0.00 0.0 32.54 3.55
478 481 7.639945 ACAAAGCTGTACTAAATCAAAGACAC 58.360 34.615 0.00 0.0 32.54 3.67
559 562 3.077359 CCCAATGACTCCACTTGAAGTC 58.923 50.000 0.00 0.0 0.00 3.01
622 625 9.495572 CATCCTCTGAGAAACTTTAACTTTAGT 57.504 33.333 6.17 0.0 0.00 2.24
721 724 8.307483 TGGTTTGATAGTGAAAAAGACAAAACA 58.693 29.630 0.00 0.0 39.80 2.83
723 726 9.712305 TTTGGTTTGATAGTGAAAAAGACAAAA 57.288 25.926 0.00 0.0 0.00 2.44
790 793 9.833917 ATTAATAAGAGGTTAAGAGGTAGCAAC 57.166 33.333 0.00 0.0 0.00 4.17
792 795 8.648693 GGATTAATAAGAGGTTAAGAGGTAGCA 58.351 37.037 0.00 0.0 0.00 3.49
811 814 7.664318 GTGGAATACGATGGGTTAAGGATTAAT 59.336 37.037 0.00 0.0 43.30 1.40
864 867 1.687494 GATGAGCGCGTGTTGACTCC 61.687 60.000 8.43 0.0 0.00 3.85
1272 1282 1.140312 AGTGTCCCTTCTTCTTGGCA 58.860 50.000 0.00 0.0 0.00 4.92
1569 1579 1.273606 ACGATGAGATCCCTATTGCCG 59.726 52.381 0.00 0.0 0.00 5.69
1784 1797 6.688073 ATCTCTTCCCACTTACTTCTTTCA 57.312 37.500 0.00 0.0 0.00 2.69
1818 1831 7.447545 ACATCTTCATTCCATACATCATCCAAG 59.552 37.037 0.00 0.0 0.00 3.61
1844 1857 6.264518 GGTCTTGAGTTTTTCCCACTTATCAA 59.735 38.462 0.00 0.0 0.00 2.57
1949 1962 8.051535 CCAAGATTATGGCTATCATCAATACCT 58.948 37.037 6.96 0.0 37.30 3.08
1950 1963 8.049117 TCCAAGATTATGGCTATCATCAATACC 58.951 37.037 6.96 0.0 40.46 2.73
2161 2180 2.939103 GTGTTGCTTCTGGCTAGTATGG 59.061 50.000 0.00 0.0 42.39 2.74
2190 2209 7.339482 AGTACAAGAAAAGTTTCTGAGTCCTT 58.661 34.615 7.05 0.0 46.22 3.36
2427 2446 5.353394 TGTCACCATCCTTTAGTGGTATC 57.647 43.478 0.00 0.0 46.62 2.24
2462 2481 2.736721 TCGTCGAAAATTTCTCTGCCTG 59.263 45.455 4.09 0.0 0.00 4.85
2522 2541 5.264395 CATTCAGATTCAGTTTTAGGGGGT 58.736 41.667 0.00 0.0 0.00 4.95
2531 2553 7.318141 CCAGTATTTTGCATTCAGATTCAGTT 58.682 34.615 0.00 0.0 0.00 3.16
2533 2555 6.270815 CCCAGTATTTTGCATTCAGATTCAG 58.729 40.000 0.00 0.0 0.00 3.02
2534 2556 5.127519 CCCCAGTATTTTGCATTCAGATTCA 59.872 40.000 0.00 0.0 0.00 2.57
2538 2560 3.364549 CCCCCAGTATTTTGCATTCAGA 58.635 45.455 0.00 0.0 0.00 3.27
2539 2561 3.806625 CCCCCAGTATTTTGCATTCAG 57.193 47.619 0.00 0.0 0.00 3.02
2667 2698 0.819259 GGCCTGCTGACAACAACTGA 60.819 55.000 0.00 0.0 0.00 3.41
2668 2699 1.656441 GGCCTGCTGACAACAACTG 59.344 57.895 0.00 0.0 0.00 3.16
2723 2754 7.667219 TCTTCAGATAAGCATCCAAAAGAGTTT 59.333 33.333 0.00 0.0 0.00 2.66
2738 2769 5.580297 GCAGGAGAGTGTTTCTTCAGATAAG 59.420 44.000 0.00 0.0 35.87 1.73
2811 2842 2.777094 TGGCTGTGATTCGACAAATGA 58.223 42.857 0.00 0.0 0.00 2.57
2829 2860 0.524816 GTTGCAATGCTCGCAGATGG 60.525 55.000 6.82 0.0 41.18 3.51
2857 2888 2.802247 GTGCCTTTTTCCATTTGCACTC 59.198 45.455 5.27 0.0 44.16 3.51
2867 2898 1.752198 GGTTGGGGTGCCTTTTTCC 59.248 57.895 0.00 0.0 0.00 3.13
2870 2901 1.530655 CTCGGTTGGGGTGCCTTTT 60.531 57.895 0.00 0.0 0.00 2.27
2879 2910 2.119484 TTGTAGGTGCCTCGGTTGGG 62.119 60.000 0.00 0.0 0.00 4.12
2926 2957 5.820423 TGGGAAGTTCGTTCATATAATGGTG 59.180 40.000 0.00 0.0 36.82 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.