Multiple sequence alignment - TraesCS1A01G038200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G038200 chr1A 100.000 2558 0 0 1 2558 21021806 21024363 0.000000e+00 4724.0
1 TraesCS1A01G038200 chr1A 85.834 833 70 35 764 1571 20997899 20998708 0.000000e+00 841.0
2 TraesCS1A01G038200 chr1D 92.086 1074 52 16 752 1800 19184778 19185843 0.000000e+00 1482.0
3 TraesCS1A01G038200 chr1D 84.793 822 87 24 769 1570 19150805 19151608 0.000000e+00 791.0
4 TraesCS1A01G038200 chr1D 85.221 724 86 14 1847 2558 19185974 19186688 0.000000e+00 725.0
5 TraesCS1A01G038200 chr1D 90.698 258 14 7 273 527 377972683 377972433 4.080000e-88 335.0
6 TraesCS1A01G038200 chr1D 95.745 47 2 0 710 756 19184707 19184753 2.730000e-10 76.8
7 TraesCS1A01G038200 chr1B 90.498 1084 58 27 752 1800 28762612 28763685 0.000000e+00 1389.0
8 TraesCS1A01G038200 chr1B 86.435 833 63 35 764 1570 28625931 28626739 0.000000e+00 867.0
9 TraesCS1A01G038200 chr1B 85.984 635 47 13 1939 2552 28763936 28764549 2.150000e-180 641.0
10 TraesCS1A01G038200 chr1B 86.102 295 31 4 233 527 369225472 369225188 2.470000e-80 309.0
11 TraesCS1A01G038200 chr3A 84.458 489 47 22 1051 1520 746261434 746261912 3.000000e-124 455.0
12 TraesCS1A01G038200 chr6D 83.463 514 47 27 1051 1543 24001604 24002100 6.490000e-121 444.0
13 TraesCS1A01G038200 chr6D 82.617 512 49 23 1052 1543 16523150 16522659 1.420000e-112 416.0
14 TraesCS1A01G038200 chr3D 83.951 486 55 17 1051 1520 611407354 611407832 6.490000e-121 444.0
15 TraesCS1A01G038200 chr6B 81.239 565 48 34 1004 1543 29060610 29060079 1.100000e-108 403.0
16 TraesCS1A01G038200 chr6B 92.887 239 13 1 289 527 523343637 523343871 6.780000e-91 344.0
17 TraesCS1A01G038200 chr6B 88.672 256 20 6 1294 1543 38878010 38878262 1.150000e-78 303.0
18 TraesCS1A01G038200 chr7D 93.305 239 12 1 289 527 31062082 31061848 1.460000e-92 350.0
19 TraesCS1A01G038200 chr2A 93.333 240 11 2 289 527 362446136 362445901 1.460000e-92 350.0
20 TraesCS1A01G038200 chr4D 93.249 237 12 1 291 527 26896015 26895783 1.880000e-91 346.0
21 TraesCS1A01G038200 chr4D 87.121 264 25 5 1296 1559 352580202 352580456 8.950000e-75 291.0
22 TraesCS1A01G038200 chr7A 92.149 242 15 1 286 527 631367416 631367653 3.150000e-89 339.0
23 TraesCS1A01G038200 chr7A 87.619 105 10 3 187 290 639778649 639778751 4.470000e-23 119.0
24 TraesCS1A01G038200 chr7A 80.734 109 20 1 178 286 620373970 620374077 1.630000e-12 84.2
25 TraesCS1A01G038200 chr2D 92.469 239 14 1 289 527 295166643 295166409 3.150000e-89 339.0
26 TraesCS1A01G038200 chr2B 90.800 250 17 4 279 527 66219770 66220014 1.900000e-86 329.0
27 TraesCS1A01G038200 chr2B 85.185 108 14 2 183 290 18144423 18144528 2.690000e-20 110.0
28 TraesCS1A01G038200 chr2B 84.158 101 14 2 188 287 2634454 2634553 2.090000e-16 97.1
29 TraesCS1A01G038200 chr4A 90.594 202 13 6 1008 1204 112847017 112846817 1.950000e-66 263.0
30 TraesCS1A01G038200 chr6A 89.474 209 12 8 1008 1213 16593796 16593595 3.270000e-64 255.0
31 TraesCS1A01G038200 chr4B 88.182 110 12 1 182 291 548119355 548119247 2.070000e-26 130.0
32 TraesCS1A01G038200 chr4B 88.571 105 7 4 187 290 72650527 72650427 3.460000e-24 122.0
33 TraesCS1A01G038200 chr5D 86.239 109 11 4 183 290 10367736 10367841 5.780000e-22 115.0
34 TraesCS1A01G038200 chr5A 94.872 39 1 1 837 874 556534478 556534440 2.750000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G038200 chr1A 21021806 21024363 2557 False 4724.000000 4724 100.000000 1 2558 1 chr1A.!!$F2 2557
1 TraesCS1A01G038200 chr1A 20997899 20998708 809 False 841.000000 841 85.834000 764 1571 1 chr1A.!!$F1 807
2 TraesCS1A01G038200 chr1D 19150805 19151608 803 False 791.000000 791 84.793000 769 1570 1 chr1D.!!$F1 801
3 TraesCS1A01G038200 chr1D 19184707 19186688 1981 False 761.266667 1482 91.017333 710 2558 3 chr1D.!!$F2 1848
4 TraesCS1A01G038200 chr1B 28762612 28764549 1937 False 1015.000000 1389 88.241000 752 2552 2 chr1B.!!$F2 1800
5 TraesCS1A01G038200 chr1B 28625931 28626739 808 False 867.000000 867 86.435000 764 1570 1 chr1B.!!$F1 806
6 TraesCS1A01G038200 chr6B 29060079 29060610 531 True 403.000000 403 81.239000 1004 1543 1 chr6B.!!$R1 539

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
370 371 0.031585 TCAACCAACGAGACCGACTG 59.968 55.0 0.0 0.0 39.5 3.51 F
966 1021 0.036577 CAGCTTCCACCCACTCTCAG 60.037 60.0 0.0 0.0 0.0 3.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1274 1391 0.240945 CAAAACAAGATCGGCGGCTT 59.759 50.000 7.21 8.65 0.0 4.35 R
2219 2498 1.276421 ACAAGAACCATGTCTCTCCCG 59.724 52.381 0.00 0.00 0.0 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.826979 CACATGCTCACAGATCAAGC 57.173 50.000 0.00 0.00 36.56 4.01
20 21 2.357075 CACATGCTCACAGATCAAGCT 58.643 47.619 0.00 0.00 36.96 3.74
21 22 3.528532 CACATGCTCACAGATCAAGCTA 58.471 45.455 0.00 0.00 36.96 3.32
22 23 3.937079 CACATGCTCACAGATCAAGCTAA 59.063 43.478 0.00 0.00 36.96 3.09
23 24 4.393990 CACATGCTCACAGATCAAGCTAAA 59.606 41.667 0.00 0.00 36.96 1.85
24 25 5.005740 ACATGCTCACAGATCAAGCTAAAA 58.994 37.500 0.00 0.00 36.96 1.52
25 26 5.106396 ACATGCTCACAGATCAAGCTAAAAC 60.106 40.000 0.00 0.00 36.96 2.43
26 27 3.433274 TGCTCACAGATCAAGCTAAAACG 59.567 43.478 0.00 0.00 36.96 3.60
27 28 3.679980 GCTCACAGATCAAGCTAAAACGA 59.320 43.478 0.00 0.00 33.23 3.85
28 29 4.201666 GCTCACAGATCAAGCTAAAACGAG 60.202 45.833 0.00 0.00 33.23 4.18
29 30 3.679980 TCACAGATCAAGCTAAAACGAGC 59.320 43.478 0.00 0.00 43.19 5.03
30 31 3.433274 CACAGATCAAGCTAAAACGAGCA 59.567 43.478 0.00 0.00 45.43 4.26
31 32 3.681897 ACAGATCAAGCTAAAACGAGCAG 59.318 43.478 0.00 0.00 45.43 4.24
32 33 3.928992 CAGATCAAGCTAAAACGAGCAGA 59.071 43.478 0.00 0.00 45.43 4.26
33 34 3.929610 AGATCAAGCTAAAACGAGCAGAC 59.070 43.478 0.00 0.00 45.43 3.51
34 35 3.106242 TCAAGCTAAAACGAGCAGACA 57.894 42.857 0.00 0.00 45.43 3.41
35 36 3.664107 TCAAGCTAAAACGAGCAGACAT 58.336 40.909 0.00 0.00 45.43 3.06
36 37 3.433274 TCAAGCTAAAACGAGCAGACATG 59.567 43.478 0.00 0.00 45.43 3.21
37 38 3.319137 AGCTAAAACGAGCAGACATGA 57.681 42.857 0.00 0.00 45.43 3.07
38 39 3.664107 AGCTAAAACGAGCAGACATGAA 58.336 40.909 0.00 0.00 45.43 2.57
39 40 4.256920 AGCTAAAACGAGCAGACATGAAT 58.743 39.130 0.00 0.00 45.43 2.57
40 41 4.331168 AGCTAAAACGAGCAGACATGAATC 59.669 41.667 0.00 0.00 45.43 2.52
41 42 3.729526 AAAACGAGCAGACATGAATCG 57.270 42.857 0.00 4.08 40.78 3.34
42 43 2.654749 AACGAGCAGACATGAATCGA 57.345 45.000 0.00 0.00 38.65 3.59
43 44 2.879002 ACGAGCAGACATGAATCGAT 57.121 45.000 0.00 0.00 38.65 3.59
44 45 2.467838 ACGAGCAGACATGAATCGATG 58.532 47.619 0.00 0.00 38.65 3.84
45 46 1.791204 CGAGCAGACATGAATCGATGG 59.209 52.381 0.00 0.00 38.65 3.51
46 47 1.530293 GAGCAGACATGAATCGATGGC 59.470 52.381 0.00 0.00 0.00 4.40
47 48 0.234106 GCAGACATGAATCGATGGCG 59.766 55.000 0.00 0.00 36.36 5.69
48 49 1.575244 CAGACATGAATCGATGGCGT 58.425 50.000 0.00 0.00 36.36 5.68
49 50 1.524355 CAGACATGAATCGATGGCGTC 59.476 52.381 0.00 4.09 36.36 5.19
57 58 3.511131 CGATGGCGTCGTGTATCG 58.489 61.111 20.53 3.84 45.19 2.92
69 70 3.908081 GTATCGCCGGCCGGAGAA 61.908 66.667 46.59 33.24 46.53 2.87
70 71 3.602677 TATCGCCGGCCGGAGAAG 61.603 66.667 46.59 32.13 46.53 2.85
78 79 4.459089 GCCGGAGAAGAAGCGCCT 62.459 66.667 5.05 0.00 0.00 5.52
79 80 2.202810 CCGGAGAAGAAGCGCCTC 60.203 66.667 2.29 0.00 0.00 4.70
80 81 2.716017 CCGGAGAAGAAGCGCCTCT 61.716 63.158 2.29 1.98 0.00 3.69
81 82 1.216710 CGGAGAAGAAGCGCCTCTT 59.783 57.895 20.89 20.89 38.39 2.85
82 83 0.456221 CGGAGAAGAAGCGCCTCTTA 59.544 55.000 20.79 0.00 35.76 2.10
83 84 1.799548 CGGAGAAGAAGCGCCTCTTAC 60.800 57.143 20.79 16.55 35.76 2.34
84 85 1.471851 GGAGAAGAAGCGCCTCTTACC 60.472 57.143 20.79 20.80 35.76 2.85
85 86 1.478916 GAGAAGAAGCGCCTCTTACCT 59.521 52.381 20.79 14.49 35.76 3.08
86 87 1.205893 AGAAGAAGCGCCTCTTACCTG 59.794 52.381 20.79 0.00 35.76 4.00
87 88 0.391793 AAGAAGCGCCTCTTACCTGC 60.392 55.000 19.49 0.00 33.81 4.85
88 89 1.219393 GAAGCGCCTCTTACCTGCT 59.781 57.895 2.29 0.00 34.56 4.24
89 90 0.808060 GAAGCGCCTCTTACCTGCTC 60.808 60.000 2.29 0.00 34.56 4.26
90 91 1.544825 AAGCGCCTCTTACCTGCTCA 61.545 55.000 2.29 0.00 34.19 4.26
91 92 1.144936 GCGCCTCTTACCTGCTCAT 59.855 57.895 0.00 0.00 0.00 2.90
92 93 0.878086 GCGCCTCTTACCTGCTCATC 60.878 60.000 0.00 0.00 0.00 2.92
93 94 0.596083 CGCCTCTTACCTGCTCATCG 60.596 60.000 0.00 0.00 0.00 3.84
94 95 0.249657 GCCTCTTACCTGCTCATCGG 60.250 60.000 0.00 0.00 0.00 4.18
95 96 1.115467 CCTCTTACCTGCTCATCGGT 58.885 55.000 0.00 0.00 37.31 4.69
96 97 1.202463 CCTCTTACCTGCTCATCGGTG 60.202 57.143 0.00 0.00 34.76 4.94
97 98 1.478510 CTCTTACCTGCTCATCGGTGT 59.521 52.381 0.00 0.00 34.76 4.16
98 99 1.476891 TCTTACCTGCTCATCGGTGTC 59.523 52.381 0.00 0.00 34.76 3.67
99 100 1.478510 CTTACCTGCTCATCGGTGTCT 59.521 52.381 0.00 0.00 34.76 3.41
100 101 2.430248 TACCTGCTCATCGGTGTCTA 57.570 50.000 0.00 0.00 34.76 2.59
101 102 1.781786 ACCTGCTCATCGGTGTCTAT 58.218 50.000 0.00 0.00 30.90 1.98
102 103 1.683917 ACCTGCTCATCGGTGTCTATC 59.316 52.381 0.00 0.00 30.90 2.08
103 104 1.000283 CCTGCTCATCGGTGTCTATCC 60.000 57.143 0.00 0.00 0.00 2.59
105 106 0.669077 GCTCATCGGTGTCTATCCGT 59.331 55.000 0.00 0.00 46.86 4.69
106 107 1.600663 GCTCATCGGTGTCTATCCGTG 60.601 57.143 0.00 3.24 46.86 4.94
107 108 0.384309 TCATCGGTGTCTATCCGTGC 59.616 55.000 0.00 0.00 46.86 5.34
108 109 0.102300 CATCGGTGTCTATCCGTGCA 59.898 55.000 4.36 0.00 46.86 4.57
109 110 0.385751 ATCGGTGTCTATCCGTGCAG 59.614 55.000 4.36 0.00 46.86 4.41
110 111 0.678684 TCGGTGTCTATCCGTGCAGA 60.679 55.000 4.36 0.00 46.86 4.26
111 112 0.525668 CGGTGTCTATCCGTGCAGAC 60.526 60.000 0.00 0.00 42.62 3.51
112 113 0.818296 GGTGTCTATCCGTGCAGACT 59.182 55.000 0.00 0.00 41.46 3.24
113 114 1.469940 GGTGTCTATCCGTGCAGACTG 60.470 57.143 0.00 0.00 41.46 3.51
114 115 1.472878 GTGTCTATCCGTGCAGACTGA 59.527 52.381 6.65 0.00 41.46 3.41
115 116 2.099921 GTGTCTATCCGTGCAGACTGAT 59.900 50.000 6.65 0.00 41.46 2.90
116 117 2.099756 TGTCTATCCGTGCAGACTGATG 59.900 50.000 6.65 0.00 41.46 3.07
117 118 2.099921 GTCTATCCGTGCAGACTGATGT 59.900 50.000 6.65 0.00 38.50 3.06
118 119 2.099756 TCTATCCGTGCAGACTGATGTG 59.900 50.000 6.65 0.00 29.67 3.21
119 120 0.610174 ATCCGTGCAGACTGATGTGT 59.390 50.000 6.65 0.00 0.00 3.72
120 121 0.319813 TCCGTGCAGACTGATGTGTG 60.320 55.000 6.65 0.00 40.04 3.82
121 122 1.293963 CCGTGCAGACTGATGTGTGG 61.294 60.000 6.65 0.00 37.85 4.17
122 123 0.319813 CGTGCAGACTGATGTGTGGA 60.320 55.000 6.65 0.00 37.85 4.02
123 124 3.612517 TGCAGACTGATGTGTGGAC 57.387 52.632 6.65 0.00 37.85 4.02
124 125 1.051008 TGCAGACTGATGTGTGGACT 58.949 50.000 6.65 0.00 37.85 3.85
125 126 2.247358 TGCAGACTGATGTGTGGACTA 58.753 47.619 6.65 0.00 37.85 2.59
126 127 2.632512 TGCAGACTGATGTGTGGACTAA 59.367 45.455 6.65 0.00 37.85 2.24
127 128 3.261643 TGCAGACTGATGTGTGGACTAAT 59.738 43.478 6.65 0.00 37.85 1.73
128 129 3.620374 GCAGACTGATGTGTGGACTAATG 59.380 47.826 6.65 0.00 37.85 1.90
129 130 4.825422 CAGACTGATGTGTGGACTAATGT 58.175 43.478 0.00 0.00 34.29 2.71
130 131 5.624509 GCAGACTGATGTGTGGACTAATGTA 60.625 44.000 6.65 0.00 37.85 2.29
131 132 6.577103 CAGACTGATGTGTGGACTAATGTAT 58.423 40.000 0.00 0.00 34.29 2.29
132 133 6.478016 CAGACTGATGTGTGGACTAATGTATG 59.522 42.308 0.00 0.00 34.29 2.39
133 134 5.118990 ACTGATGTGTGGACTAATGTATGC 58.881 41.667 0.00 0.00 0.00 3.14
134 135 5.096443 TGATGTGTGGACTAATGTATGCA 57.904 39.130 0.00 0.00 0.00 3.96
135 136 5.118286 TGATGTGTGGACTAATGTATGCAG 58.882 41.667 0.00 0.00 0.00 4.41
136 137 3.872696 TGTGTGGACTAATGTATGCAGG 58.127 45.455 0.00 0.00 0.00 4.85
137 138 2.614057 GTGTGGACTAATGTATGCAGGC 59.386 50.000 0.00 0.00 0.00 4.85
138 139 2.238395 TGTGGACTAATGTATGCAGGCA 59.762 45.455 0.00 0.00 0.00 4.75
139 140 3.278574 GTGGACTAATGTATGCAGGCAA 58.721 45.455 0.00 0.00 0.00 4.52
140 141 3.065371 GTGGACTAATGTATGCAGGCAAC 59.935 47.826 0.00 0.00 0.00 4.17
141 142 2.618709 GGACTAATGTATGCAGGCAACC 59.381 50.000 0.00 0.00 37.17 3.77
142 143 3.278574 GACTAATGTATGCAGGCAACCA 58.721 45.455 0.00 0.00 37.17 3.67
143 144 3.694072 GACTAATGTATGCAGGCAACCAA 59.306 43.478 0.00 0.00 37.17 3.67
144 145 4.085733 ACTAATGTATGCAGGCAACCAAA 58.914 39.130 0.00 0.00 37.17 3.28
145 146 3.317603 AATGTATGCAGGCAACCAAAC 57.682 42.857 0.00 0.00 37.17 2.93
146 147 1.697284 TGTATGCAGGCAACCAAACA 58.303 45.000 0.00 0.00 37.17 2.83
147 148 1.339610 TGTATGCAGGCAACCAAACAC 59.660 47.619 0.00 0.00 37.17 3.32
148 149 1.339610 GTATGCAGGCAACCAAACACA 59.660 47.619 0.00 0.00 37.17 3.72
149 150 0.104671 ATGCAGGCAACCAAACACAC 59.895 50.000 0.00 0.00 37.17 3.82
150 151 1.227234 GCAGGCAACCAAACACACC 60.227 57.895 0.00 0.00 37.17 4.16
151 152 1.675720 GCAGGCAACCAAACACACCT 61.676 55.000 0.00 0.00 37.17 4.00
152 153 0.385390 CAGGCAACCAAACACACCTC 59.615 55.000 0.00 0.00 37.17 3.85
153 154 0.755327 AGGCAACCAAACACACCTCC 60.755 55.000 0.00 0.00 37.17 4.30
154 155 1.040339 GGCAACCAAACACACCTCCA 61.040 55.000 0.00 0.00 0.00 3.86
155 156 0.820871 GCAACCAAACACACCTCCAA 59.179 50.000 0.00 0.00 0.00 3.53
156 157 1.202405 GCAACCAAACACACCTCCAAG 60.202 52.381 0.00 0.00 0.00 3.61
157 158 2.099405 CAACCAAACACACCTCCAAGT 58.901 47.619 0.00 0.00 0.00 3.16
158 159 1.762708 ACCAAACACACCTCCAAGTG 58.237 50.000 0.00 0.00 43.65 3.16
165 166 3.006672 CACCTCCAAGTGTGTGGAC 57.993 57.895 0.00 0.00 42.97 4.02
166 167 0.469917 CACCTCCAAGTGTGTGGACT 59.530 55.000 0.00 0.00 42.97 3.85
167 168 0.469917 ACCTCCAAGTGTGTGGACTG 59.530 55.000 0.00 0.00 42.97 3.51
168 169 0.758734 CCTCCAAGTGTGTGGACTGA 59.241 55.000 0.00 0.00 42.97 3.41
169 170 1.349026 CCTCCAAGTGTGTGGACTGAT 59.651 52.381 0.00 0.00 42.97 2.90
170 171 2.420642 CTCCAAGTGTGTGGACTGATG 58.579 52.381 0.00 0.00 42.97 3.07
171 172 1.768275 TCCAAGTGTGTGGACTGATGT 59.232 47.619 0.00 0.00 42.97 3.06
172 173 2.969262 TCCAAGTGTGTGGACTGATGTA 59.031 45.455 0.00 0.00 42.97 2.29
173 174 3.582647 TCCAAGTGTGTGGACTGATGTAT 59.417 43.478 0.00 0.00 42.97 2.29
174 175 4.041567 TCCAAGTGTGTGGACTGATGTATT 59.958 41.667 0.00 0.00 42.97 1.89
175 176 4.761739 CCAAGTGTGTGGACTGATGTATTT 59.238 41.667 0.00 0.00 41.65 1.40
176 177 5.335113 CCAAGTGTGTGGACTGATGTATTTG 60.335 44.000 0.00 0.00 41.65 2.32
177 178 3.753272 AGTGTGTGGACTGATGTATTTGC 59.247 43.478 0.00 0.00 0.00 3.68
178 179 3.753272 GTGTGTGGACTGATGTATTTGCT 59.247 43.478 0.00 0.00 0.00 3.91
179 180 4.216257 GTGTGTGGACTGATGTATTTGCTT 59.784 41.667 0.00 0.00 0.00 3.91
180 181 4.826733 TGTGTGGACTGATGTATTTGCTTT 59.173 37.500 0.00 0.00 0.00 3.51
181 182 5.156355 GTGTGGACTGATGTATTTGCTTTG 58.844 41.667 0.00 0.00 0.00 2.77
182 183 4.218200 TGTGGACTGATGTATTTGCTTTGG 59.782 41.667 0.00 0.00 0.00 3.28
183 184 4.218417 GTGGACTGATGTATTTGCTTTGGT 59.782 41.667 0.00 0.00 0.00 3.67
184 185 4.458989 TGGACTGATGTATTTGCTTTGGTC 59.541 41.667 0.00 0.00 0.00 4.02
185 186 4.458989 GGACTGATGTATTTGCTTTGGTCA 59.541 41.667 0.00 0.00 0.00 4.02
186 187 5.126061 GGACTGATGTATTTGCTTTGGTCAT 59.874 40.000 0.00 0.00 0.00 3.06
187 188 6.350445 GGACTGATGTATTTGCTTTGGTCATT 60.350 38.462 0.00 0.00 0.00 2.57
188 189 6.996509 ACTGATGTATTTGCTTTGGTCATTT 58.003 32.000 0.00 0.00 0.00 2.32
189 190 7.444299 ACTGATGTATTTGCTTTGGTCATTTT 58.556 30.769 0.00 0.00 0.00 1.82
190 191 7.933033 ACTGATGTATTTGCTTTGGTCATTTTT 59.067 29.630 0.00 0.00 0.00 1.94
191 192 9.421806 CTGATGTATTTGCTTTGGTCATTTTTA 57.578 29.630 0.00 0.00 0.00 1.52
192 193 9.202273 TGATGTATTTGCTTTGGTCATTTTTAC 57.798 29.630 0.00 0.00 0.00 2.01
193 194 9.423061 GATGTATTTGCTTTGGTCATTTTTACT 57.577 29.630 0.00 0.00 0.00 2.24
194 195 8.810652 TGTATTTGCTTTGGTCATTTTTACTC 57.189 30.769 0.00 0.00 0.00 2.59
195 196 7.870445 TGTATTTGCTTTGGTCATTTTTACTCC 59.130 33.333 0.00 0.00 0.00 3.85
196 197 4.497473 TGCTTTGGTCATTTTTACTCCG 57.503 40.909 0.00 0.00 0.00 4.63
197 198 3.242518 GCTTTGGTCATTTTTACTCCGC 58.757 45.455 0.00 0.00 0.00 5.54
198 199 3.488489 CTTTGGTCATTTTTACTCCGCG 58.512 45.455 0.00 0.00 0.00 6.46
199 200 2.172851 TGGTCATTTTTACTCCGCGT 57.827 45.000 4.92 0.00 0.00 6.01
200 201 3.316071 TGGTCATTTTTACTCCGCGTA 57.684 42.857 4.92 0.00 0.00 4.42
201 202 3.864243 TGGTCATTTTTACTCCGCGTAT 58.136 40.909 4.92 0.00 0.00 3.06
202 203 4.255301 TGGTCATTTTTACTCCGCGTATT 58.745 39.130 4.92 0.00 0.00 1.89
203 204 5.417811 TGGTCATTTTTACTCCGCGTATTA 58.582 37.500 4.92 0.00 0.00 0.98
204 205 5.521010 TGGTCATTTTTACTCCGCGTATTAG 59.479 40.000 4.92 0.00 0.00 1.73
205 206 5.750067 GGTCATTTTTACTCCGCGTATTAGA 59.250 40.000 4.92 0.00 0.00 2.10
206 207 6.074463 GGTCATTTTTACTCCGCGTATTAGAG 60.074 42.308 4.92 6.57 0.00 2.43
207 208 6.474751 GTCATTTTTACTCCGCGTATTAGAGT 59.525 38.462 17.07 17.07 43.17 3.24
208 209 7.009907 GTCATTTTTACTCCGCGTATTAGAGTT 59.990 37.037 17.90 5.35 41.09 3.01
209 210 6.636666 TTTTTACTCCGCGTATTAGAGTTG 57.363 37.500 17.90 0.00 41.09 3.16
210 211 4.970662 TTACTCCGCGTATTAGAGTTGT 57.029 40.909 17.90 0.24 41.09 3.32
211 212 3.146618 ACTCCGCGTATTAGAGTTGTG 57.853 47.619 4.92 0.00 37.60 3.33
212 213 2.490903 ACTCCGCGTATTAGAGTTGTGT 59.509 45.455 4.92 0.00 37.60 3.72
213 214 3.106672 CTCCGCGTATTAGAGTTGTGTC 58.893 50.000 4.92 0.00 0.00 3.67
214 215 2.488937 TCCGCGTATTAGAGTTGTGTCA 59.511 45.455 4.92 0.00 0.00 3.58
215 216 3.057386 TCCGCGTATTAGAGTTGTGTCAA 60.057 43.478 4.92 0.00 0.00 3.18
216 217 3.303495 CCGCGTATTAGAGTTGTGTCAAG 59.697 47.826 4.92 0.00 0.00 3.02
217 218 3.918591 CGCGTATTAGAGTTGTGTCAAGT 59.081 43.478 0.00 0.00 0.00 3.16
218 219 4.384846 CGCGTATTAGAGTTGTGTCAAGTT 59.615 41.667 0.00 0.00 0.00 2.66
219 220 5.570206 CGCGTATTAGAGTTGTGTCAAGTTA 59.430 40.000 0.00 0.00 0.00 2.24
220 221 6.088483 CGCGTATTAGAGTTGTGTCAAGTTAA 59.912 38.462 0.00 0.00 0.00 2.01
221 222 7.358600 CGCGTATTAGAGTTGTGTCAAGTTAAA 60.359 37.037 0.00 0.00 0.00 1.52
222 223 8.440833 GCGTATTAGAGTTGTGTCAAGTTAAAT 58.559 33.333 0.00 0.00 0.00 1.40
223 224 9.953825 CGTATTAGAGTTGTGTCAAGTTAAATC 57.046 33.333 0.00 0.00 0.00 2.17
276 277 6.707440 AAAACATCAACATCTACAACACCA 57.293 33.333 0.00 0.00 0.00 4.17
277 278 6.707440 AAACATCAACATCTACAACACCAA 57.293 33.333 0.00 0.00 0.00 3.67
278 279 6.707440 AACATCAACATCTACAACACCAAA 57.293 33.333 0.00 0.00 0.00 3.28
279 280 6.899393 ACATCAACATCTACAACACCAAAT 57.101 33.333 0.00 0.00 0.00 2.32
280 281 7.994425 ACATCAACATCTACAACACCAAATA 57.006 32.000 0.00 0.00 0.00 1.40
281 282 8.579850 ACATCAACATCTACAACACCAAATAT 57.420 30.769 0.00 0.00 0.00 1.28
282 283 9.679661 ACATCAACATCTACAACACCAAATATA 57.320 29.630 0.00 0.00 0.00 0.86
297 298 9.490083 ACACCAAATATATATACTACTCCCTCC 57.510 37.037 0.00 0.00 0.00 4.30
298 299 9.488762 CACCAAATATATATACTACTCCCTCCA 57.511 37.037 0.00 0.00 0.00 3.86
307 308 8.980832 ATATACTACTCCCTCCATTCTGAAAT 57.019 34.615 0.00 0.00 0.00 2.17
309 310 8.980832 ATACTACTCCCTCCATTCTGAAATAT 57.019 34.615 0.00 0.00 0.00 1.28
311 312 8.429237 ACTACTCCCTCCATTCTGAAATATAG 57.571 38.462 0.00 0.00 0.00 1.31
312 313 8.013667 ACTACTCCCTCCATTCTGAAATATAGT 58.986 37.037 0.00 0.00 0.00 2.12
313 314 7.072263 ACTCCCTCCATTCTGAAATATAGTG 57.928 40.000 0.00 0.00 0.00 2.74
314 315 5.869579 TCCCTCCATTCTGAAATATAGTGC 58.130 41.667 0.00 0.00 0.00 4.40
315 316 5.006386 CCCTCCATTCTGAAATATAGTGCC 58.994 45.833 0.00 0.00 0.00 5.01
316 317 5.006386 CCTCCATTCTGAAATATAGTGCCC 58.994 45.833 0.00 0.00 0.00 5.36
317 318 4.985538 TCCATTCTGAAATATAGTGCCCC 58.014 43.478 0.00 0.00 0.00 5.80
318 319 4.082125 CCATTCTGAAATATAGTGCCCCC 58.918 47.826 0.00 0.00 0.00 5.40
319 320 3.485463 TTCTGAAATATAGTGCCCCCG 57.515 47.619 0.00 0.00 0.00 5.73
320 321 1.071699 TCTGAAATATAGTGCCCCCGC 59.928 52.381 0.00 0.00 0.00 6.13
321 322 0.250124 TGAAATATAGTGCCCCCGCG 60.250 55.000 0.00 0.00 38.08 6.46
322 323 1.574702 GAAATATAGTGCCCCCGCGC 61.575 60.000 0.00 0.00 46.29 6.86
335 336 4.812476 CGCGCTTCCCGATGTCCA 62.812 66.667 5.56 0.00 40.02 4.02
336 337 2.435938 GCGCTTCCCGATGTCCAA 60.436 61.111 0.00 0.00 40.02 3.53
337 338 2.750888 GCGCTTCCCGATGTCCAAC 61.751 63.158 0.00 0.00 40.02 3.77
338 339 1.079127 CGCTTCCCGATGTCCAACT 60.079 57.895 0.00 0.00 40.02 3.16
339 340 0.673644 CGCTTCCCGATGTCCAACTT 60.674 55.000 0.00 0.00 40.02 2.66
340 341 1.534729 GCTTCCCGATGTCCAACTTT 58.465 50.000 0.00 0.00 0.00 2.66
341 342 1.200020 GCTTCCCGATGTCCAACTTTG 59.800 52.381 0.00 0.00 0.00 2.77
342 343 2.778299 CTTCCCGATGTCCAACTTTGA 58.222 47.619 0.00 0.00 0.00 2.69
343 344 2.178912 TCCCGATGTCCAACTTTGAC 57.821 50.000 0.00 0.00 0.00 3.18
344 345 1.165270 CCCGATGTCCAACTTTGACC 58.835 55.000 0.00 0.00 0.00 4.02
345 346 1.544537 CCCGATGTCCAACTTTGACCA 60.545 52.381 0.00 0.00 0.00 4.02
346 347 1.535462 CCGATGTCCAACTTTGACCAC 59.465 52.381 0.00 0.00 0.00 4.16
347 348 2.217750 CGATGTCCAACTTTGACCACA 58.782 47.619 0.00 0.00 0.00 4.17
348 349 2.616376 CGATGTCCAACTTTGACCACAA 59.384 45.455 0.00 0.00 0.00 3.33
349 350 3.066064 CGATGTCCAACTTTGACCACAAA 59.934 43.478 0.00 0.00 42.66 2.83
350 351 4.261572 CGATGTCCAACTTTGACCACAAAT 60.262 41.667 0.00 0.00 43.64 2.32
351 352 5.600696 GATGTCCAACTTTGACCACAAATT 58.399 37.500 0.00 0.00 43.64 1.82
352 353 5.004922 TGTCCAACTTTGACCACAAATTC 57.995 39.130 0.00 0.00 43.64 2.17
353 354 4.464244 TGTCCAACTTTGACCACAAATTCA 59.536 37.500 0.00 0.00 43.64 2.57
354 355 5.047021 TGTCCAACTTTGACCACAAATTCAA 60.047 36.000 0.00 0.00 43.64 2.69
355 356 5.290885 GTCCAACTTTGACCACAAATTCAAC 59.709 40.000 0.00 0.00 43.64 3.18
356 357 4.570369 CCAACTTTGACCACAAATTCAACC 59.430 41.667 0.00 0.00 43.64 3.77
357 358 5.174395 CAACTTTGACCACAAATTCAACCA 58.826 37.500 0.00 0.00 43.64 3.67
358 359 5.413309 ACTTTGACCACAAATTCAACCAA 57.587 34.783 0.00 0.00 43.64 3.67
359 360 5.175127 ACTTTGACCACAAATTCAACCAAC 58.825 37.500 0.00 0.00 43.64 3.77
360 361 3.428746 TGACCACAAATTCAACCAACG 57.571 42.857 0.00 0.00 0.00 4.10
361 362 3.017442 TGACCACAAATTCAACCAACGA 58.983 40.909 0.00 0.00 0.00 3.85
362 363 3.066064 TGACCACAAATTCAACCAACGAG 59.934 43.478 0.00 0.00 0.00 4.18
363 364 3.283751 ACCACAAATTCAACCAACGAGA 58.716 40.909 0.00 0.00 0.00 4.04
364 365 3.066203 ACCACAAATTCAACCAACGAGAC 59.934 43.478 0.00 0.00 0.00 3.36
365 366 3.550030 CCACAAATTCAACCAACGAGACC 60.550 47.826 0.00 0.00 0.00 3.85
366 367 2.289547 ACAAATTCAACCAACGAGACCG 59.710 45.455 0.00 0.00 42.50 4.79
367 368 2.536761 AATTCAACCAACGAGACCGA 57.463 45.000 0.00 0.00 39.50 4.69
368 369 1.792006 ATTCAACCAACGAGACCGAC 58.208 50.000 0.00 0.00 39.50 4.79
369 370 0.748450 TTCAACCAACGAGACCGACT 59.252 50.000 0.00 0.00 39.50 4.18
370 371 0.031585 TCAACCAACGAGACCGACTG 59.968 55.000 0.00 0.00 39.50 3.51
371 372 1.300697 AACCAACGAGACCGACTGC 60.301 57.895 0.00 0.00 39.50 4.40
372 373 2.805353 CCAACGAGACCGACTGCG 60.805 66.667 0.00 0.00 39.50 5.18
388 389 2.281900 CGGTGGGCGGGAGAAAAA 60.282 61.111 0.00 0.00 0.00 1.94
441 442 9.730420 ATACGAATTCACTGGTATAATTTTTGC 57.270 29.630 6.22 0.00 0.00 3.68
442 443 7.826690 ACGAATTCACTGGTATAATTTTTGCT 58.173 30.769 6.22 0.00 0.00 3.91
443 444 7.968405 ACGAATTCACTGGTATAATTTTTGCTC 59.032 33.333 6.22 0.00 0.00 4.26
444 445 7.432252 CGAATTCACTGGTATAATTTTTGCTCC 59.568 37.037 6.22 0.00 0.00 4.70
445 446 6.524101 TTCACTGGTATAATTTTTGCTCCC 57.476 37.500 0.00 0.00 0.00 4.30
446 447 4.638421 TCACTGGTATAATTTTTGCTCCCG 59.362 41.667 0.00 0.00 0.00 5.14
447 448 3.380320 ACTGGTATAATTTTTGCTCCCGC 59.620 43.478 0.00 0.00 0.00 6.13
448 449 2.691011 TGGTATAATTTTTGCTCCCGCC 59.309 45.455 0.00 0.00 34.43 6.13
449 450 2.287368 GGTATAATTTTTGCTCCCGCCG 60.287 50.000 0.00 0.00 34.43 6.46
450 451 0.102300 ATAATTTTTGCTCCCGCCGC 59.898 50.000 0.00 0.00 34.43 6.53
451 452 1.244697 TAATTTTTGCTCCCGCCGCA 61.245 50.000 0.00 0.00 35.22 5.69
452 453 2.490993 AATTTTTGCTCCCGCCGCAG 62.491 55.000 0.00 0.00 38.80 5.18
453 454 4.947147 TTTTGCTCCCGCCGCAGT 62.947 61.111 0.00 0.00 38.80 4.40
465 466 2.805353 CGCAGTCGGTCTCGTTGG 60.805 66.667 0.00 0.00 37.69 3.77
466 467 2.338984 GCAGTCGGTCTCGTTGGT 59.661 61.111 0.00 0.00 37.69 3.67
467 468 1.300697 GCAGTCGGTCTCGTTGGTT 60.301 57.895 0.00 0.00 37.69 3.67
468 469 0.038892 GCAGTCGGTCTCGTTGGTTA 60.039 55.000 0.00 0.00 37.69 2.85
469 470 1.603678 GCAGTCGGTCTCGTTGGTTAA 60.604 52.381 0.00 0.00 37.69 2.01
470 471 2.746269 CAGTCGGTCTCGTTGGTTAAA 58.254 47.619 0.00 0.00 37.69 1.52
471 472 3.323243 CAGTCGGTCTCGTTGGTTAAAT 58.677 45.455 0.00 0.00 37.69 1.40
472 473 3.744426 CAGTCGGTCTCGTTGGTTAAATT 59.256 43.478 0.00 0.00 37.69 1.82
473 474 4.212636 CAGTCGGTCTCGTTGGTTAAATTT 59.787 41.667 0.00 0.00 37.69 1.82
474 475 5.406175 CAGTCGGTCTCGTTGGTTAAATTTA 59.594 40.000 0.00 0.00 37.69 1.40
475 476 6.091713 CAGTCGGTCTCGTTGGTTAAATTTAT 59.908 38.462 0.00 0.00 37.69 1.40
476 477 6.091713 AGTCGGTCTCGTTGGTTAAATTTATG 59.908 38.462 0.00 0.00 37.69 1.90
477 478 5.352016 TCGGTCTCGTTGGTTAAATTTATGG 59.648 40.000 0.00 0.00 37.69 2.74
478 479 5.122711 CGGTCTCGTTGGTTAAATTTATGGT 59.877 40.000 0.00 0.00 0.00 3.55
479 480 6.549061 GGTCTCGTTGGTTAAATTTATGGTC 58.451 40.000 0.00 0.00 0.00 4.02
480 481 6.149807 GGTCTCGTTGGTTAAATTTATGGTCA 59.850 38.462 0.00 0.00 0.00 4.02
481 482 7.308710 GGTCTCGTTGGTTAAATTTATGGTCAA 60.309 37.037 0.00 0.00 0.00 3.18
482 483 8.077386 GTCTCGTTGGTTAAATTTATGGTCAAA 58.923 33.333 0.00 0.00 0.00 2.69
483 484 8.293867 TCTCGTTGGTTAAATTTATGGTCAAAG 58.706 33.333 0.00 4.88 0.00 2.77
484 485 7.942990 TCGTTGGTTAAATTTATGGTCAAAGT 58.057 30.769 0.00 0.00 0.00 2.66
485 486 8.414778 TCGTTGGTTAAATTTATGGTCAAAGTT 58.585 29.630 0.00 0.00 31.36 2.66
486 487 8.484008 CGTTGGTTAAATTTATGGTCAAAGTTG 58.516 33.333 0.00 0.00 29.44 3.16
487 488 9.535878 GTTGGTTAAATTTATGGTCAAAGTTGA 57.464 29.630 0.00 0.00 34.20 3.18
489 490 9.757227 TGGTTAAATTTATGGTCAAAGTTGAAG 57.243 29.630 0.00 0.00 39.21 3.02
490 491 8.708742 GGTTAAATTTATGGTCAAAGTTGAAGC 58.291 33.333 0.00 0.00 39.21 3.86
491 492 9.255304 GTTAAATTTATGGTCAAAGTTGAAGCA 57.745 29.630 0.00 0.00 39.21 3.91
492 493 7.713764 AAATTTATGGTCAAAGTTGAAGCAC 57.286 32.000 0.00 0.00 39.21 4.40
493 494 4.481930 TTATGGTCAAAGTTGAAGCACG 57.518 40.909 0.00 0.00 39.21 5.34
494 495 1.021202 TGGTCAAAGTTGAAGCACGG 58.979 50.000 0.00 0.00 39.21 4.94
495 496 1.305201 GGTCAAAGTTGAAGCACGGA 58.695 50.000 0.00 0.00 39.21 4.69
496 497 1.673920 GGTCAAAGTTGAAGCACGGAA 59.326 47.619 0.00 0.00 39.21 4.30
497 498 2.098443 GGTCAAAGTTGAAGCACGGAAA 59.902 45.455 0.00 0.00 39.21 3.13
498 499 3.243401 GGTCAAAGTTGAAGCACGGAAAT 60.243 43.478 0.00 0.00 39.21 2.17
499 500 4.023536 GGTCAAAGTTGAAGCACGGAAATA 60.024 41.667 0.00 0.00 39.21 1.40
500 501 5.147162 GTCAAAGTTGAAGCACGGAAATAG 58.853 41.667 0.00 0.00 39.21 1.73
501 502 5.049680 GTCAAAGTTGAAGCACGGAAATAGA 60.050 40.000 0.00 0.00 39.21 1.98
502 503 5.179368 TCAAAGTTGAAGCACGGAAATAGAG 59.821 40.000 0.00 0.00 33.55 2.43
503 504 3.600388 AGTTGAAGCACGGAAATAGAGG 58.400 45.455 0.00 0.00 0.00 3.69
504 505 3.260884 AGTTGAAGCACGGAAATAGAGGA 59.739 43.478 0.00 0.00 0.00 3.71
505 506 3.973206 TGAAGCACGGAAATAGAGGAA 57.027 42.857 0.00 0.00 0.00 3.36
506 507 3.861840 TGAAGCACGGAAATAGAGGAAG 58.138 45.455 0.00 0.00 0.00 3.46
507 508 2.317530 AGCACGGAAATAGAGGAAGC 57.682 50.000 0.00 0.00 0.00 3.86
508 509 1.555075 AGCACGGAAATAGAGGAAGCA 59.445 47.619 0.00 0.00 0.00 3.91
509 510 1.666189 GCACGGAAATAGAGGAAGCAC 59.334 52.381 0.00 0.00 0.00 4.40
510 511 2.678190 GCACGGAAATAGAGGAAGCACT 60.678 50.000 0.00 0.00 0.00 4.40
511 512 3.430374 GCACGGAAATAGAGGAAGCACTA 60.430 47.826 0.00 0.00 0.00 2.74
512 513 4.740934 GCACGGAAATAGAGGAAGCACTAT 60.741 45.833 0.00 0.00 0.00 2.12
513 514 5.509163 GCACGGAAATAGAGGAAGCACTATA 60.509 44.000 0.00 0.00 0.00 1.31
514 515 6.692486 CACGGAAATAGAGGAAGCACTATAT 58.308 40.000 0.00 0.00 0.00 0.86
515 516 7.155328 CACGGAAATAGAGGAAGCACTATATT 58.845 38.462 0.00 0.00 36.67 1.28
516 517 7.657761 CACGGAAATAGAGGAAGCACTATATTT 59.342 37.037 12.47 12.47 43.60 1.40
517 518 8.211629 ACGGAAATAGAGGAAGCACTATATTTT 58.788 33.333 13.32 1.33 42.00 1.82
518 519 8.499162 CGGAAATAGAGGAAGCACTATATTTTG 58.501 37.037 13.32 8.36 42.00 2.44
519 520 8.787852 GGAAATAGAGGAAGCACTATATTTTGG 58.212 37.037 13.32 0.00 42.00 3.28
520 521 9.561069 GAAATAGAGGAAGCACTATATTTTGGA 57.439 33.333 13.32 0.00 42.00 3.53
521 522 9.920946 AAATAGAGGAAGCACTATATTTTGGAA 57.079 29.630 8.81 0.00 40.18 3.53
522 523 8.910351 ATAGAGGAAGCACTATATTTTGGAAC 57.090 34.615 0.00 0.00 0.00 3.62
523 524 5.817816 AGAGGAAGCACTATATTTTGGAACG 59.182 40.000 0.00 0.00 0.00 3.95
524 525 4.881850 AGGAAGCACTATATTTTGGAACGG 59.118 41.667 0.00 0.00 0.00 4.44
525 526 4.879545 GGAAGCACTATATTTTGGAACGGA 59.120 41.667 0.00 0.00 0.00 4.69
526 527 5.007724 GGAAGCACTATATTTTGGAACGGAG 59.992 44.000 0.00 0.00 0.00 4.63
527 528 5.353394 AGCACTATATTTTGGAACGGAGA 57.647 39.130 0.00 0.00 0.00 3.71
528 529 5.741011 AGCACTATATTTTGGAACGGAGAA 58.259 37.500 0.00 0.00 0.00 2.87
529 530 6.357367 AGCACTATATTTTGGAACGGAGAAT 58.643 36.000 0.00 0.00 0.00 2.40
530 531 6.260936 AGCACTATATTTTGGAACGGAGAATG 59.739 38.462 0.00 0.00 0.00 2.67
531 532 6.038271 GCACTATATTTTGGAACGGAGAATGT 59.962 38.462 0.00 0.00 0.00 2.71
532 533 7.225931 GCACTATATTTTGGAACGGAGAATGTA 59.774 37.037 0.00 0.00 0.00 2.29
533 534 9.273016 CACTATATTTTGGAACGGAGAATGTAT 57.727 33.333 0.00 0.00 0.00 2.29
534 535 9.490379 ACTATATTTTGGAACGGAGAATGTATC 57.510 33.333 0.00 0.00 0.00 2.24
535 536 9.489084 CTATATTTTGGAACGGAGAATGTATCA 57.511 33.333 0.00 0.00 0.00 2.15
536 537 8.746052 ATATTTTGGAACGGAGAATGTATCAA 57.254 30.769 0.00 0.00 0.00 2.57
537 538 6.885952 TTTTGGAACGGAGAATGTATCAAA 57.114 33.333 0.00 0.00 0.00 2.69
538 539 5.873179 TTGGAACGGAGAATGTATCAAAC 57.127 39.130 0.00 0.00 0.00 2.93
539 540 4.258543 TGGAACGGAGAATGTATCAAACC 58.741 43.478 0.00 0.00 0.00 3.27
540 541 4.258543 GGAACGGAGAATGTATCAAACCA 58.741 43.478 0.00 0.00 0.00 3.67
541 542 4.094442 GGAACGGAGAATGTATCAAACCAC 59.906 45.833 0.00 0.00 0.00 4.16
542 543 4.280436 ACGGAGAATGTATCAAACCACA 57.720 40.909 0.00 0.00 0.00 4.17
543 544 4.843728 ACGGAGAATGTATCAAACCACAT 58.156 39.130 0.00 0.00 36.96 3.21
544 545 5.253330 ACGGAGAATGTATCAAACCACATT 58.747 37.500 0.00 0.00 45.60 2.71
545 546 5.710099 ACGGAGAATGTATCAAACCACATTT 59.290 36.000 1.86 0.00 43.58 2.32
546 547 6.128007 ACGGAGAATGTATCAAACCACATTTC 60.128 38.462 1.86 2.71 43.58 2.17
547 548 6.128035 CGGAGAATGTATCAAACCACATTTCA 60.128 38.462 1.86 0.00 43.58 2.69
548 549 7.415541 CGGAGAATGTATCAAACCACATTTCAT 60.416 37.037 1.86 0.00 43.58 2.57
549 550 8.902806 GGAGAATGTATCAAACCACATTTCATA 58.097 33.333 1.86 0.00 43.58 2.15
561 562 9.941325 AAACCACATTTCATAATGAATTTAGCA 57.059 25.926 0.04 0.00 43.12 3.49
562 563 9.941325 AACCACATTTCATAATGAATTTAGCAA 57.059 25.926 0.04 0.00 43.12 3.91
666 667 8.970691 ACACAAAGAAAATTATATGCAGACAC 57.029 30.769 0.00 0.00 0.00 3.67
667 668 7.750458 ACACAAAGAAAATTATATGCAGACACG 59.250 33.333 0.00 0.00 0.00 4.49
668 669 6.747280 ACAAAGAAAATTATATGCAGACACGC 59.253 34.615 0.00 0.00 0.00 5.34
669 670 5.083136 AGAAAATTATATGCAGACACGCG 57.917 39.130 3.53 3.53 33.35 6.01
670 671 2.949714 AATTATATGCAGACACGCGC 57.050 45.000 5.73 0.00 33.35 6.86
671 672 1.148310 ATTATATGCAGACACGCGCC 58.852 50.000 5.73 0.00 33.35 6.53
672 673 0.104120 TTATATGCAGACACGCGCCT 59.896 50.000 5.73 0.00 33.35 5.52
673 674 0.318699 TATATGCAGACACGCGCCTC 60.319 55.000 5.73 0.00 33.35 4.70
674 675 2.296814 ATATGCAGACACGCGCCTCA 62.297 55.000 5.73 2.54 33.35 3.86
675 676 2.499756 TATGCAGACACGCGCCTCAA 62.500 55.000 5.73 0.00 33.35 3.02
676 677 3.345808 GCAGACACGCGCCTCAAA 61.346 61.111 5.73 0.00 0.00 2.69
677 678 2.680913 GCAGACACGCGCCTCAAAT 61.681 57.895 5.73 0.00 0.00 2.32
678 679 1.358725 GCAGACACGCGCCTCAAATA 61.359 55.000 5.73 0.00 0.00 1.40
679 680 1.290203 CAGACACGCGCCTCAAATAT 58.710 50.000 5.73 0.00 0.00 1.28
680 681 1.258982 CAGACACGCGCCTCAAATATC 59.741 52.381 5.73 0.00 0.00 1.63
681 682 1.137086 AGACACGCGCCTCAAATATCT 59.863 47.619 5.73 0.00 0.00 1.98
682 683 2.361119 AGACACGCGCCTCAAATATCTA 59.639 45.455 5.73 0.00 0.00 1.98
683 684 3.120792 GACACGCGCCTCAAATATCTAA 58.879 45.455 5.73 0.00 0.00 2.10
684 685 3.527533 ACACGCGCCTCAAATATCTAAA 58.472 40.909 5.73 0.00 0.00 1.85
685 686 4.127171 ACACGCGCCTCAAATATCTAAAT 58.873 39.130 5.73 0.00 0.00 1.40
686 687 4.574828 ACACGCGCCTCAAATATCTAAATT 59.425 37.500 5.73 0.00 0.00 1.82
687 688 5.065988 ACACGCGCCTCAAATATCTAAATTT 59.934 36.000 5.73 0.00 0.00 1.82
688 689 5.396362 CACGCGCCTCAAATATCTAAATTTG 59.604 40.000 5.73 3.48 44.61 2.32
689 690 4.379793 CGCGCCTCAAATATCTAAATTTGC 59.620 41.667 0.00 0.00 43.49 3.68
690 691 5.523369 GCGCCTCAAATATCTAAATTTGCT 58.477 37.500 0.00 0.00 43.49 3.91
691 692 5.979517 GCGCCTCAAATATCTAAATTTGCTT 59.020 36.000 0.00 0.00 43.49 3.91
692 693 6.074676 GCGCCTCAAATATCTAAATTTGCTTG 60.075 38.462 0.00 0.00 43.49 4.01
693 694 7.195646 CGCCTCAAATATCTAAATTTGCTTGA 58.804 34.615 0.00 0.72 43.49 3.02
694 695 7.701924 CGCCTCAAATATCTAAATTTGCTTGAA 59.298 33.333 0.00 0.00 43.49 2.69
695 696 8.811378 GCCTCAAATATCTAAATTTGCTTGAAC 58.189 33.333 0.00 0.00 43.49 3.18
696 697 9.013490 CCTCAAATATCTAAATTTGCTTGAACG 57.987 33.333 0.00 0.00 43.49 3.95
697 698 9.559958 CTCAAATATCTAAATTTGCTTGAACGT 57.440 29.630 0.00 0.00 43.49 3.99
741 742 0.248417 CTCATGGTCACGAGAGAGCG 60.248 60.000 0.00 0.00 38.81 5.03
939 994 3.553508 CCATTTTCAAACCACCTCAGCAG 60.554 47.826 0.00 0.00 0.00 4.24
966 1021 0.036577 CAGCTTCCACCCACTCTCAG 60.037 60.000 0.00 0.00 0.00 3.35
967 1022 1.376553 GCTTCCACCCACTCTCAGC 60.377 63.158 0.00 0.00 0.00 4.26
973 1028 3.086600 CCCACTCTCAGCCCCTCC 61.087 72.222 0.00 0.00 0.00 4.30
1241 1344 1.070975 CCGTTATACTCCTCGTCGACG 60.071 57.143 31.30 31.30 41.45 5.12
1246 1349 1.960040 TACTCCTCGTCGACGCCCTA 61.960 60.000 32.19 14.82 39.60 3.53
1250 1353 2.821366 TCGTCGACGCCCTACTCC 60.821 66.667 32.19 0.00 39.60 3.85
1251 1354 2.823147 CGTCGACGCCCTACTCCT 60.823 66.667 26.59 0.00 0.00 3.69
1253 1356 3.138798 TCGACGCCCTACTCCTGC 61.139 66.667 0.00 0.00 0.00 4.85
1272 1389 1.324005 CCTCTCTCCCCGGTCTGAAC 61.324 65.000 0.00 0.00 0.00 3.18
1274 1391 1.609501 CTCTCCCCGGTCTGAACCA 60.610 63.158 0.00 0.00 46.86 3.67
1572 1709 2.559231 GGCCTAGATCCTAGTAGTGTGC 59.441 54.545 0.00 0.00 0.00 4.57
1573 1710 2.226912 GCCTAGATCCTAGTAGTGTGCG 59.773 54.545 0.00 0.00 0.00 5.34
1574 1711 3.741249 CCTAGATCCTAGTAGTGTGCGA 58.259 50.000 0.00 0.00 0.00 5.10
1575 1712 3.499157 CCTAGATCCTAGTAGTGTGCGAC 59.501 52.174 0.00 0.00 0.00 5.19
1576 1713 2.299521 AGATCCTAGTAGTGTGCGACC 58.700 52.381 0.00 0.00 0.00 4.79
1577 1714 1.002684 GATCCTAGTAGTGTGCGACCG 60.003 57.143 0.00 0.00 0.00 4.79
1580 1717 0.797249 CTAGTAGTGTGCGACCGTGC 60.797 60.000 0.00 0.00 0.00 5.34
1581 1718 2.203972 TAGTAGTGTGCGACCGTGCC 62.204 60.000 0.00 0.00 0.00 5.01
1582 1719 4.710695 TAGTGTGCGACCGTGCCG 62.711 66.667 0.00 0.00 0.00 5.69
1618 1757 0.109086 CCTCGTGTGCCTAGTGTCTG 60.109 60.000 0.00 0.00 0.00 3.51
1622 1761 1.538204 CGTGTGCCTAGTGTCTGTGTT 60.538 52.381 0.00 0.00 0.00 3.32
1623 1762 2.287970 CGTGTGCCTAGTGTCTGTGTTA 60.288 50.000 0.00 0.00 0.00 2.41
1624 1763 3.724374 GTGTGCCTAGTGTCTGTGTTAA 58.276 45.455 0.00 0.00 0.00 2.01
1656 1795 0.106708 TGGTGTGTTCCAGAGAGTGC 59.893 55.000 0.00 0.00 33.19 4.40
1658 1797 1.606737 GGTGTGTTCCAGAGAGTGCTC 60.607 57.143 0.00 0.00 41.62 4.26
1667 1806 2.028658 CCAGAGAGTGCTCAAGCTTGTA 60.029 50.000 25.19 11.68 43.81 2.41
1711 1850 0.319555 CCGTGAACGAAGAGGAAGCA 60.320 55.000 4.03 0.00 43.02 3.91
1746 1885 6.169094 TCTGTTCTTCTGAATCAATCTGGTC 58.831 40.000 0.00 0.00 34.40 4.02
1771 1910 8.629158 TCTCTAATGCAGTGTTTGTTAAAATGT 58.371 29.630 0.00 0.00 0.00 2.71
1783 1922 9.868277 TGTTTGTTAAAATGTCACTGAATTTCT 57.132 25.926 0.00 0.00 0.00 2.52
1855 2124 7.923414 AATTTGTATCTAGGAACAGTGTTCC 57.077 36.000 37.61 37.61 38.86 3.62
1866 2135 2.775890 ACAGTGTTCCTCTCTGCATTG 58.224 47.619 0.00 0.00 40.16 2.82
1900 2178 7.490962 ACAAATAGAATCTGAAACGTGACAA 57.509 32.000 0.00 0.00 0.00 3.18
1901 2179 7.925993 ACAAATAGAATCTGAAACGTGACAAA 58.074 30.769 0.00 0.00 0.00 2.83
1902 2180 8.567948 ACAAATAGAATCTGAAACGTGACAAAT 58.432 29.630 0.00 0.00 0.00 2.32
1907 2185 7.925993 AGAATCTGAAACGTGACAAATACAAA 58.074 30.769 0.00 0.00 0.00 2.83
1919 2197 8.020819 CGTGACAAATACAAATTAGATGGTTGT 58.979 33.333 0.00 0.00 38.88 3.32
1929 2207 9.077885 ACAAATTAGATGGTTGTGTACAGATTT 57.922 29.630 0.00 0.00 34.28 2.17
1930 2208 9.912634 CAAATTAGATGGTTGTGTACAGATTTT 57.087 29.630 0.00 0.00 0.00 1.82
1932 2210 9.912634 AATTAGATGGTTGTGTACAGATTTTTG 57.087 29.630 0.00 0.00 0.00 2.44
1935 2213 7.425606 AGATGGTTGTGTACAGATTTTTGTTC 58.574 34.615 0.00 0.00 32.56 3.18
1937 2215 7.164230 TGGTTGTGTACAGATTTTTGTTCTT 57.836 32.000 0.00 0.00 32.56 2.52
1985 2264 9.860898 GAGGCTACAAAATAACATTTCAAGATT 57.139 29.630 0.00 0.00 0.00 2.40
1986 2265 9.643693 AGGCTACAAAATAACATTTCAAGATTG 57.356 29.630 0.00 0.00 0.00 2.67
2013 2292 1.374631 TGCATGCTCGAGTCACACC 60.375 57.895 20.33 5.53 0.00 4.16
2023 2302 3.130633 TCGAGTCACACCAACAAATCTG 58.869 45.455 0.00 0.00 0.00 2.90
2043 2322 5.322754 TCTGCAGTAGTTAGTACTCCAACT 58.677 41.667 14.67 14.04 40.27 3.16
2060 2339 3.932089 CCAACTGTCCCAAAAAGTTTGTG 59.068 43.478 0.00 0.00 31.88 3.33
2098 2377 7.148641 AGATATGGATGAATGTAGACACGTTC 58.851 38.462 3.34 3.34 46.61 3.95
2128 2407 5.000012 AGACACATCCGAATCTAGACAAC 58.000 43.478 0.00 0.00 0.00 3.32
2130 2409 4.748892 ACACATCCGAATCTAGACAACTG 58.251 43.478 0.00 0.00 0.00 3.16
2157 2436 0.786435 AGCTTTTTGGGATGGAGGGT 59.214 50.000 0.00 0.00 0.00 4.34
2158 2437 1.149923 AGCTTTTTGGGATGGAGGGTT 59.850 47.619 0.00 0.00 0.00 4.11
2174 2453 4.381612 GGAGGGTTTAGTATTTTGCAAGGC 60.382 45.833 0.00 0.00 0.00 4.35
2212 2491 5.282055 TGGCCATTGTGTTTGTTGATTTA 57.718 34.783 0.00 0.00 0.00 1.40
2213 2492 5.862845 TGGCCATTGTGTTTGTTGATTTAT 58.137 33.333 0.00 0.00 0.00 1.40
2214 2493 6.997655 TGGCCATTGTGTTTGTTGATTTATA 58.002 32.000 0.00 0.00 0.00 0.98
2215 2494 7.445121 TGGCCATTGTGTTTGTTGATTTATAA 58.555 30.769 0.00 0.00 0.00 0.98
2216 2495 7.601886 TGGCCATTGTGTTTGTTGATTTATAAG 59.398 33.333 0.00 0.00 0.00 1.73
2247 2526 4.432712 AGACATGGTTCTTGTTTTGCAAC 58.567 39.130 0.00 0.00 32.90 4.17
2253 2558 4.869297 TGGTTCTTGTTTTGCAACTGAATG 59.131 37.500 0.00 0.00 32.65 2.67
2260 2583 6.154203 TGTTTTGCAACTGAATGACCATTA 57.846 33.333 0.00 0.00 33.58 1.90
2362 2685 6.297582 TGAAATTTTGCCATCAAGAACCATT 58.702 32.000 0.00 0.00 33.12 3.16
2480 2806 5.296748 TCGTCAAGAGAATCAACAACATCA 58.703 37.500 0.00 0.00 37.82 3.07
2487 2813 7.440523 AGAGAATCAACAACATCAAGGTAAC 57.559 36.000 0.00 0.00 37.82 2.50
2495 2821 5.646606 ACAACATCAAGGTAACAACAACAC 58.353 37.500 0.00 0.00 41.41 3.32
2553 2879 7.145985 CACTCTTTCTTGTGCTAACTACTACA 58.854 38.462 0.00 0.00 0.00 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 4.093998 CGTTTTAGCTTGATCTGTGAGCAT 59.906 41.667 0.00 2.92 38.85 3.79
5 6 3.679980 TCGTTTTAGCTTGATCTGTGAGC 59.320 43.478 0.00 0.00 36.68 4.26
8 9 3.433274 TGCTCGTTTTAGCTTGATCTGTG 59.567 43.478 0.00 0.00 43.19 3.66
9 10 3.664107 TGCTCGTTTTAGCTTGATCTGT 58.336 40.909 0.00 0.00 43.19 3.41
10 11 3.928992 TCTGCTCGTTTTAGCTTGATCTG 59.071 43.478 0.00 0.00 43.19 2.90
11 12 3.929610 GTCTGCTCGTTTTAGCTTGATCT 59.070 43.478 0.00 0.00 43.19 2.75
12 13 3.679980 TGTCTGCTCGTTTTAGCTTGATC 59.320 43.478 0.00 0.00 43.19 2.92
13 14 3.664107 TGTCTGCTCGTTTTAGCTTGAT 58.336 40.909 0.00 0.00 43.19 2.57
14 15 3.106242 TGTCTGCTCGTTTTAGCTTGA 57.894 42.857 0.00 0.00 43.19 3.02
15 16 3.433274 TCATGTCTGCTCGTTTTAGCTTG 59.567 43.478 0.00 0.00 43.19 4.01
16 17 3.664107 TCATGTCTGCTCGTTTTAGCTT 58.336 40.909 0.00 0.00 43.19 3.74
17 18 3.319137 TCATGTCTGCTCGTTTTAGCT 57.681 42.857 0.00 0.00 43.19 3.32
18 19 4.582459 GATTCATGTCTGCTCGTTTTAGC 58.418 43.478 0.00 0.00 43.08 3.09
19 20 4.562789 TCGATTCATGTCTGCTCGTTTTAG 59.437 41.667 0.00 0.00 32.48 1.85
20 21 4.490743 TCGATTCATGTCTGCTCGTTTTA 58.509 39.130 0.00 0.00 32.48 1.52
21 22 3.325870 TCGATTCATGTCTGCTCGTTTT 58.674 40.909 0.00 0.00 32.48 2.43
22 23 2.959516 TCGATTCATGTCTGCTCGTTT 58.040 42.857 0.00 0.00 32.48 3.60
23 24 2.654749 TCGATTCATGTCTGCTCGTT 57.345 45.000 0.00 0.00 32.48 3.85
24 25 2.467838 CATCGATTCATGTCTGCTCGT 58.532 47.619 0.00 0.00 32.48 4.18
25 26 1.791204 CCATCGATTCATGTCTGCTCG 59.209 52.381 0.00 0.00 0.00 5.03
26 27 1.530293 GCCATCGATTCATGTCTGCTC 59.470 52.381 0.00 0.00 0.00 4.26
27 28 1.590932 GCCATCGATTCATGTCTGCT 58.409 50.000 0.00 0.00 0.00 4.24
28 29 0.234106 CGCCATCGATTCATGTCTGC 59.766 55.000 0.00 0.00 38.10 4.26
29 30 1.524355 GACGCCATCGATTCATGTCTG 59.476 52.381 0.00 0.00 39.41 3.51
30 31 1.858091 GACGCCATCGATTCATGTCT 58.142 50.000 0.00 0.00 39.41 3.41
50 51 4.944372 CTCCGGCCGGCGATACAC 62.944 72.222 39.89 3.85 34.68 2.90
52 53 3.843117 CTTCTCCGGCCGGCGATAC 62.843 68.421 39.89 5.16 34.68 2.24
53 54 3.602677 CTTCTCCGGCCGGCGATA 61.603 66.667 39.89 25.26 34.68 2.92
61 62 4.459089 AGGCGCTTCTTCTCCGGC 62.459 66.667 7.64 0.00 46.20 6.13
62 63 2.202810 GAGGCGCTTCTTCTCCGG 60.203 66.667 12.94 0.00 0.00 5.14
63 64 0.456221 TAAGAGGCGCTTCTTCTCCG 59.544 55.000 34.44 0.00 38.35 4.63
64 65 1.471851 GGTAAGAGGCGCTTCTTCTCC 60.472 57.143 34.44 30.15 38.35 3.71
65 66 1.478916 AGGTAAGAGGCGCTTCTTCTC 59.521 52.381 34.44 26.48 38.35 2.87
66 67 1.205893 CAGGTAAGAGGCGCTTCTTCT 59.794 52.381 34.44 24.13 38.35 2.85
67 68 1.646189 CAGGTAAGAGGCGCTTCTTC 58.354 55.000 34.44 24.59 38.35 2.87
68 69 0.391793 GCAGGTAAGAGGCGCTTCTT 60.392 55.000 33.21 33.21 40.39 2.52
69 70 1.219393 GCAGGTAAGAGGCGCTTCT 59.781 57.895 17.38 17.38 38.05 2.85
70 71 0.808060 GAGCAGGTAAGAGGCGCTTC 60.808 60.000 12.25 12.25 38.05 3.86
71 72 1.219393 GAGCAGGTAAGAGGCGCTT 59.781 57.895 7.64 8.88 40.68 4.68
72 73 1.333636 ATGAGCAGGTAAGAGGCGCT 61.334 55.000 7.64 0.00 35.14 5.92
73 74 0.878086 GATGAGCAGGTAAGAGGCGC 60.878 60.000 0.00 0.00 0.00 6.53
74 75 0.596083 CGATGAGCAGGTAAGAGGCG 60.596 60.000 0.00 0.00 0.00 5.52
75 76 0.249657 CCGATGAGCAGGTAAGAGGC 60.250 60.000 0.00 0.00 0.00 4.70
76 77 1.115467 ACCGATGAGCAGGTAAGAGG 58.885 55.000 0.00 0.00 39.30 3.69
77 78 1.478510 ACACCGATGAGCAGGTAAGAG 59.521 52.381 0.00 0.00 39.00 2.85
78 79 1.476891 GACACCGATGAGCAGGTAAGA 59.523 52.381 0.00 0.00 39.00 2.10
79 80 1.478510 AGACACCGATGAGCAGGTAAG 59.521 52.381 0.00 0.00 39.00 2.34
80 81 1.557099 AGACACCGATGAGCAGGTAA 58.443 50.000 0.00 0.00 39.00 2.85
81 82 2.430248 TAGACACCGATGAGCAGGTA 57.570 50.000 0.00 0.00 39.00 3.08
82 83 1.683917 GATAGACACCGATGAGCAGGT 59.316 52.381 0.00 0.00 42.34 4.00
83 84 1.000283 GGATAGACACCGATGAGCAGG 60.000 57.143 0.00 0.00 0.00 4.85
84 85 2.430546 GGATAGACACCGATGAGCAG 57.569 55.000 0.00 0.00 0.00 4.24
93 94 0.818296 AGTCTGCACGGATAGACACC 59.182 55.000 14.71 0.00 44.41 4.16
94 95 1.472878 TCAGTCTGCACGGATAGACAC 59.527 52.381 14.71 0.00 44.41 3.67
95 96 1.834188 TCAGTCTGCACGGATAGACA 58.166 50.000 14.71 0.00 44.41 3.41
96 97 2.099921 ACATCAGTCTGCACGGATAGAC 59.900 50.000 0.00 7.00 42.77 2.59
97 98 2.099756 CACATCAGTCTGCACGGATAGA 59.900 50.000 0.00 0.00 35.47 1.98
98 99 2.159184 ACACATCAGTCTGCACGGATAG 60.159 50.000 0.00 0.00 35.47 2.08
99 100 1.824852 ACACATCAGTCTGCACGGATA 59.175 47.619 0.00 0.00 35.47 2.59
100 101 0.610174 ACACATCAGTCTGCACGGAT 59.390 50.000 0.00 0.00 37.89 4.18
101 102 0.319813 CACACATCAGTCTGCACGGA 60.320 55.000 0.00 0.00 0.00 4.69
102 103 1.293963 CCACACATCAGTCTGCACGG 61.294 60.000 0.00 0.00 0.00 4.94
103 104 0.319813 TCCACACATCAGTCTGCACG 60.320 55.000 0.00 0.00 0.00 5.34
104 105 1.151668 GTCCACACATCAGTCTGCAC 58.848 55.000 0.00 0.00 0.00 4.57
105 106 1.051008 AGTCCACACATCAGTCTGCA 58.949 50.000 0.00 0.00 0.00 4.41
106 107 3.319137 TTAGTCCACACATCAGTCTGC 57.681 47.619 0.00 0.00 0.00 4.26
107 108 4.825422 ACATTAGTCCACACATCAGTCTG 58.175 43.478 0.00 0.00 0.00 3.51
108 109 6.577103 CATACATTAGTCCACACATCAGTCT 58.423 40.000 0.00 0.00 0.00 3.24
109 110 5.235186 GCATACATTAGTCCACACATCAGTC 59.765 44.000 0.00 0.00 0.00 3.51
110 111 5.118990 GCATACATTAGTCCACACATCAGT 58.881 41.667 0.00 0.00 0.00 3.41
111 112 5.118286 TGCATACATTAGTCCACACATCAG 58.882 41.667 0.00 0.00 0.00 2.90
112 113 5.096443 TGCATACATTAGTCCACACATCA 57.904 39.130 0.00 0.00 0.00 3.07
113 114 4.512944 CCTGCATACATTAGTCCACACATC 59.487 45.833 0.00 0.00 0.00 3.06
114 115 4.454678 CCTGCATACATTAGTCCACACAT 58.545 43.478 0.00 0.00 0.00 3.21
115 116 3.872696 CCTGCATACATTAGTCCACACA 58.127 45.455 0.00 0.00 0.00 3.72
116 117 2.614057 GCCTGCATACATTAGTCCACAC 59.386 50.000 0.00 0.00 0.00 3.82
117 118 2.238395 TGCCTGCATACATTAGTCCACA 59.762 45.455 0.00 0.00 0.00 4.17
118 119 2.917933 TGCCTGCATACATTAGTCCAC 58.082 47.619 0.00 0.00 0.00 4.02
119 120 3.278574 GTTGCCTGCATACATTAGTCCA 58.721 45.455 0.00 0.00 0.00 4.02
120 121 2.618709 GGTTGCCTGCATACATTAGTCC 59.381 50.000 0.00 0.00 0.00 3.85
121 122 3.278574 TGGTTGCCTGCATACATTAGTC 58.721 45.455 0.00 0.00 0.00 2.59
122 123 3.364460 TGGTTGCCTGCATACATTAGT 57.636 42.857 0.00 0.00 0.00 2.24
123 124 4.082300 TGTTTGGTTGCCTGCATACATTAG 60.082 41.667 0.00 0.00 0.00 1.73
124 125 3.829026 TGTTTGGTTGCCTGCATACATTA 59.171 39.130 0.00 0.00 0.00 1.90
125 126 2.632028 TGTTTGGTTGCCTGCATACATT 59.368 40.909 0.00 0.00 0.00 2.71
126 127 2.029110 GTGTTTGGTTGCCTGCATACAT 60.029 45.455 0.00 0.00 0.00 2.29
127 128 1.339610 GTGTTTGGTTGCCTGCATACA 59.660 47.619 0.00 0.00 0.00 2.29
128 129 1.339610 TGTGTTTGGTTGCCTGCATAC 59.660 47.619 0.00 0.00 0.00 2.39
129 130 1.339610 GTGTGTTTGGTTGCCTGCATA 59.660 47.619 0.00 0.00 0.00 3.14
130 131 0.104671 GTGTGTTTGGTTGCCTGCAT 59.895 50.000 0.00 0.00 0.00 3.96
131 132 1.515020 GTGTGTTTGGTTGCCTGCA 59.485 52.632 0.00 0.00 0.00 4.41
132 133 1.227234 GGTGTGTTTGGTTGCCTGC 60.227 57.895 0.00 0.00 0.00 4.85
133 134 0.385390 GAGGTGTGTTTGGTTGCCTG 59.615 55.000 0.00 0.00 0.00 4.85
134 135 0.755327 GGAGGTGTGTTTGGTTGCCT 60.755 55.000 0.00 0.00 0.00 4.75
135 136 1.040339 TGGAGGTGTGTTTGGTTGCC 61.040 55.000 0.00 0.00 0.00 4.52
136 137 0.820871 TTGGAGGTGTGTTTGGTTGC 59.179 50.000 0.00 0.00 0.00 4.17
137 138 2.099405 ACTTGGAGGTGTGTTTGGTTG 58.901 47.619 0.00 0.00 0.00 3.77
138 139 2.099405 CACTTGGAGGTGTGTTTGGTT 58.901 47.619 0.00 0.00 33.04 3.67
139 140 1.005450 ACACTTGGAGGTGTGTTTGGT 59.995 47.619 0.00 0.00 46.93 3.67
140 141 1.762708 ACACTTGGAGGTGTGTTTGG 58.237 50.000 0.00 0.00 46.93 3.28
146 147 0.180406 GTCCACACACTTGGAGGTGT 59.820 55.000 0.00 0.00 46.75 4.16
147 148 0.469917 AGTCCACACACTTGGAGGTG 59.530 55.000 0.00 0.00 46.75 4.00
148 149 0.469917 CAGTCCACACACTTGGAGGT 59.530 55.000 0.00 0.00 46.75 3.85
149 150 0.758734 TCAGTCCACACACTTGGAGG 59.241 55.000 0.00 0.00 46.75 4.30
150 151 2.224378 ACATCAGTCCACACACTTGGAG 60.224 50.000 0.00 0.00 46.75 3.86
151 152 1.768275 ACATCAGTCCACACACTTGGA 59.232 47.619 0.00 0.00 43.83 3.53
152 153 2.260844 ACATCAGTCCACACACTTGG 57.739 50.000 0.00 0.00 38.10 3.61
153 154 5.692814 CAAATACATCAGTCCACACACTTG 58.307 41.667 0.00 0.00 0.00 3.16
154 155 4.216257 GCAAATACATCAGTCCACACACTT 59.784 41.667 0.00 0.00 0.00 3.16
155 156 3.753272 GCAAATACATCAGTCCACACACT 59.247 43.478 0.00 0.00 0.00 3.55
156 157 3.753272 AGCAAATACATCAGTCCACACAC 59.247 43.478 0.00 0.00 0.00 3.82
157 158 4.019792 AGCAAATACATCAGTCCACACA 57.980 40.909 0.00 0.00 0.00 3.72
158 159 5.156355 CAAAGCAAATACATCAGTCCACAC 58.844 41.667 0.00 0.00 0.00 3.82
159 160 4.218200 CCAAAGCAAATACATCAGTCCACA 59.782 41.667 0.00 0.00 0.00 4.17
160 161 4.218417 ACCAAAGCAAATACATCAGTCCAC 59.782 41.667 0.00 0.00 0.00 4.02
161 162 4.406456 ACCAAAGCAAATACATCAGTCCA 58.594 39.130 0.00 0.00 0.00 4.02
162 163 4.458989 TGACCAAAGCAAATACATCAGTCC 59.541 41.667 0.00 0.00 0.00 3.85
163 164 5.627499 TGACCAAAGCAAATACATCAGTC 57.373 39.130 0.00 0.00 0.00 3.51
164 165 6.594788 AATGACCAAAGCAAATACATCAGT 57.405 33.333 0.00 0.00 0.00 3.41
165 166 7.894376 AAAATGACCAAAGCAAATACATCAG 57.106 32.000 0.00 0.00 0.00 2.90
166 167 9.202273 GTAAAAATGACCAAAGCAAATACATCA 57.798 29.630 0.00 0.00 0.00 3.07
167 168 9.423061 AGTAAAAATGACCAAAGCAAATACATC 57.577 29.630 0.00 0.00 0.00 3.06
168 169 9.423061 GAGTAAAAATGACCAAAGCAAATACAT 57.577 29.630 0.00 0.00 0.00 2.29
169 170 7.870445 GGAGTAAAAATGACCAAAGCAAATACA 59.130 33.333 0.00 0.00 0.00 2.29
170 171 7.061789 CGGAGTAAAAATGACCAAAGCAAATAC 59.938 37.037 0.00 0.00 0.00 1.89
171 172 7.087639 CGGAGTAAAAATGACCAAAGCAAATA 58.912 34.615 0.00 0.00 0.00 1.40
172 173 5.925969 CGGAGTAAAAATGACCAAAGCAAAT 59.074 36.000 0.00 0.00 0.00 2.32
173 174 5.285651 CGGAGTAAAAATGACCAAAGCAAA 58.714 37.500 0.00 0.00 0.00 3.68
174 175 4.794655 GCGGAGTAAAAATGACCAAAGCAA 60.795 41.667 0.00 0.00 0.00 3.91
175 176 3.305064 GCGGAGTAAAAATGACCAAAGCA 60.305 43.478 0.00 0.00 0.00 3.91
176 177 3.242518 GCGGAGTAAAAATGACCAAAGC 58.757 45.455 0.00 0.00 0.00 3.51
177 178 3.058501 ACGCGGAGTAAAAATGACCAAAG 60.059 43.478 12.47 0.00 0.00 2.77
178 179 2.879646 ACGCGGAGTAAAAATGACCAAA 59.120 40.909 12.47 0.00 0.00 3.28
179 180 2.496111 ACGCGGAGTAAAAATGACCAA 58.504 42.857 12.47 0.00 0.00 3.67
180 181 2.172851 ACGCGGAGTAAAAATGACCA 57.827 45.000 12.47 0.00 0.00 4.02
181 182 4.870221 AATACGCGGAGTAAAAATGACC 57.130 40.909 12.47 0.00 39.04 4.02
182 183 6.474751 ACTCTAATACGCGGAGTAAAAATGAC 59.525 38.462 12.47 0.00 38.37 3.06
183 184 6.567050 ACTCTAATACGCGGAGTAAAAATGA 58.433 36.000 12.47 0.00 38.37 2.57
184 185 6.823678 ACTCTAATACGCGGAGTAAAAATG 57.176 37.500 12.47 0.00 38.37 2.32
185 186 6.815142 ACAACTCTAATACGCGGAGTAAAAAT 59.185 34.615 12.47 0.00 39.09 1.82
186 187 6.089820 CACAACTCTAATACGCGGAGTAAAAA 59.910 38.462 12.47 0.00 39.09 1.94
187 188 5.574055 CACAACTCTAATACGCGGAGTAAAA 59.426 40.000 12.47 0.00 39.09 1.52
188 189 5.097529 CACAACTCTAATACGCGGAGTAAA 58.902 41.667 12.47 0.00 39.09 2.01
189 190 4.156556 ACACAACTCTAATACGCGGAGTAA 59.843 41.667 12.47 0.00 39.09 2.24
190 191 3.691118 ACACAACTCTAATACGCGGAGTA 59.309 43.478 12.47 4.11 39.09 2.59
191 192 2.490903 ACACAACTCTAATACGCGGAGT 59.509 45.455 12.47 10.31 41.37 3.85
192 193 3.106672 GACACAACTCTAATACGCGGAG 58.893 50.000 12.47 9.57 0.00 4.63
193 194 2.488937 TGACACAACTCTAATACGCGGA 59.511 45.455 12.47 0.00 0.00 5.54
194 195 2.871133 TGACACAACTCTAATACGCGG 58.129 47.619 12.47 0.00 0.00 6.46
195 196 3.918591 ACTTGACACAACTCTAATACGCG 59.081 43.478 3.53 3.53 0.00 6.01
196 197 5.840940 AACTTGACACAACTCTAATACGC 57.159 39.130 0.00 0.00 0.00 4.42
197 198 9.953825 GATTTAACTTGACACAACTCTAATACG 57.046 33.333 0.00 0.00 0.00 3.06
252 253 7.106439 TGGTGTTGTAGATGTTGATGTTTTT 57.894 32.000 0.00 0.00 0.00 1.94
253 254 6.707440 TGGTGTTGTAGATGTTGATGTTTT 57.293 33.333 0.00 0.00 0.00 2.43
254 255 6.707440 TTGGTGTTGTAGATGTTGATGTTT 57.293 33.333 0.00 0.00 0.00 2.83
255 256 6.707440 TTTGGTGTTGTAGATGTTGATGTT 57.293 33.333 0.00 0.00 0.00 2.71
256 257 6.899393 ATTTGGTGTTGTAGATGTTGATGT 57.101 33.333 0.00 0.00 0.00 3.06
271 272 9.490083 GGAGGGAGTAGTATATATATTTGGTGT 57.510 37.037 0.00 0.00 0.00 4.16
272 273 9.488762 TGGAGGGAGTAGTATATATATTTGGTG 57.511 37.037 0.00 0.00 0.00 4.17
282 283 8.980832 ATTTCAGAATGGAGGGAGTAGTATAT 57.019 34.615 0.00 0.00 36.16 0.86
284 285 8.980832 ATATTTCAGAATGGAGGGAGTAGTAT 57.019 34.615 0.00 0.00 36.16 2.12
285 286 9.535170 CTATATTTCAGAATGGAGGGAGTAGTA 57.465 37.037 0.00 0.00 36.16 1.82
286 287 8.013667 ACTATATTTCAGAATGGAGGGAGTAGT 58.986 37.037 0.00 0.00 36.16 2.73
287 288 8.310382 CACTATATTTCAGAATGGAGGGAGTAG 58.690 40.741 0.00 0.00 36.16 2.57
288 289 7.256332 GCACTATATTTCAGAATGGAGGGAGTA 60.256 40.741 0.00 0.00 36.16 2.59
289 290 6.465035 GCACTATATTTCAGAATGGAGGGAGT 60.465 42.308 0.00 0.00 36.16 3.85
290 291 5.936956 GCACTATATTTCAGAATGGAGGGAG 59.063 44.000 0.00 0.00 36.16 4.30
291 292 5.221925 GGCACTATATTTCAGAATGGAGGGA 60.222 44.000 0.00 0.00 36.16 4.20
292 293 5.006386 GGCACTATATTTCAGAATGGAGGG 58.994 45.833 0.00 0.00 36.16 4.30
293 294 5.006386 GGGCACTATATTTCAGAATGGAGG 58.994 45.833 0.00 0.00 36.16 4.30
294 295 5.006386 GGGGCACTATATTTCAGAATGGAG 58.994 45.833 0.00 0.00 36.16 3.86
295 296 4.202567 GGGGGCACTATATTTCAGAATGGA 60.203 45.833 0.00 0.00 36.16 3.41
296 297 4.082125 GGGGGCACTATATTTCAGAATGG 58.918 47.826 0.00 0.00 36.16 3.16
297 298 3.753272 CGGGGGCACTATATTTCAGAATG 59.247 47.826 0.00 0.00 37.54 2.67
298 299 3.810743 GCGGGGGCACTATATTTCAGAAT 60.811 47.826 0.00 0.00 0.00 2.40
299 300 2.486548 GCGGGGGCACTATATTTCAGAA 60.487 50.000 0.00 0.00 0.00 3.02
300 301 1.071699 GCGGGGGCACTATATTTCAGA 59.928 52.381 0.00 0.00 0.00 3.27
301 302 1.523758 GCGGGGGCACTATATTTCAG 58.476 55.000 0.00 0.00 0.00 3.02
302 303 0.250124 CGCGGGGGCACTATATTTCA 60.250 55.000 0.00 0.00 0.00 2.69
303 304 1.574702 GCGCGGGGGCACTATATTTC 61.575 60.000 8.83 0.00 0.00 2.17
304 305 1.599797 GCGCGGGGGCACTATATTT 60.600 57.895 8.83 0.00 0.00 1.40
305 306 2.032071 GCGCGGGGGCACTATATT 59.968 61.111 8.83 0.00 0.00 1.28
306 307 2.450479 GAAGCGCGGGGGCACTATAT 62.450 60.000 8.83 0.00 34.64 0.86
307 308 3.158648 AAGCGCGGGGGCACTATA 61.159 61.111 8.83 0.00 34.64 1.31
308 309 4.547367 GAAGCGCGGGGGCACTAT 62.547 66.667 8.83 0.00 34.64 2.12
318 319 4.812476 TGGACATCGGGAAGCGCG 62.812 66.667 0.00 0.00 41.10 6.86
319 320 2.435938 TTGGACATCGGGAAGCGC 60.436 61.111 0.00 0.00 0.00 5.92
320 321 0.673644 AAGTTGGACATCGGGAAGCG 60.674 55.000 0.00 0.00 0.00 4.68
321 322 1.200020 CAAAGTTGGACATCGGGAAGC 59.800 52.381 0.00 0.00 0.00 3.86
322 323 2.484264 GTCAAAGTTGGACATCGGGAAG 59.516 50.000 5.46 0.00 35.36 3.46
323 324 2.500229 GTCAAAGTTGGACATCGGGAA 58.500 47.619 5.46 0.00 35.36 3.97
324 325 1.271163 GGTCAAAGTTGGACATCGGGA 60.271 52.381 12.50 0.00 37.00 5.14
325 326 1.165270 GGTCAAAGTTGGACATCGGG 58.835 55.000 12.50 0.00 37.00 5.14
326 327 1.535462 GTGGTCAAAGTTGGACATCGG 59.465 52.381 12.50 0.00 37.00 4.18
327 328 2.217750 TGTGGTCAAAGTTGGACATCG 58.782 47.619 12.50 0.00 37.00 3.84
328 329 4.647424 TTTGTGGTCAAAGTTGGACATC 57.353 40.909 12.50 5.16 38.44 3.06
329 330 5.128499 TGAATTTGTGGTCAAAGTTGGACAT 59.872 36.000 12.50 0.00 45.01 3.06
330 331 4.464244 TGAATTTGTGGTCAAAGTTGGACA 59.536 37.500 12.50 0.00 45.01 4.02
331 332 5.004922 TGAATTTGTGGTCAAAGTTGGAC 57.995 39.130 1.31 1.31 45.01 4.02
332 333 5.415221 GTTGAATTTGTGGTCAAAGTTGGA 58.585 37.500 0.00 0.00 45.01 3.53
333 334 4.570369 GGTTGAATTTGTGGTCAAAGTTGG 59.430 41.667 0.00 0.00 45.01 3.77
334 335 5.174395 TGGTTGAATTTGTGGTCAAAGTTG 58.826 37.500 0.00 0.00 45.01 3.16
335 336 5.413309 TGGTTGAATTTGTGGTCAAAGTT 57.587 34.783 0.00 0.00 45.01 2.66
336 337 5.175127 GTTGGTTGAATTTGTGGTCAAAGT 58.825 37.500 0.00 0.00 45.01 2.66
337 338 4.267452 CGTTGGTTGAATTTGTGGTCAAAG 59.733 41.667 0.00 0.00 45.01 2.77
338 339 4.082190 TCGTTGGTTGAATTTGTGGTCAAA 60.082 37.500 0.00 0.00 45.71 2.69
339 340 3.444034 TCGTTGGTTGAATTTGTGGTCAA 59.556 39.130 0.00 0.00 0.00 3.18
340 341 3.017442 TCGTTGGTTGAATTTGTGGTCA 58.983 40.909 0.00 0.00 0.00 4.02
341 342 3.314080 TCTCGTTGGTTGAATTTGTGGTC 59.686 43.478 0.00 0.00 0.00 4.02
342 343 3.066203 GTCTCGTTGGTTGAATTTGTGGT 59.934 43.478 0.00 0.00 0.00 4.16
343 344 3.550030 GGTCTCGTTGGTTGAATTTGTGG 60.550 47.826 0.00 0.00 0.00 4.17
344 345 3.628017 GGTCTCGTTGGTTGAATTTGTG 58.372 45.455 0.00 0.00 0.00 3.33
345 346 2.289547 CGGTCTCGTTGGTTGAATTTGT 59.710 45.455 0.00 0.00 0.00 2.83
346 347 2.546368 TCGGTCTCGTTGGTTGAATTTG 59.454 45.455 0.00 0.00 37.69 2.32
347 348 2.546789 GTCGGTCTCGTTGGTTGAATTT 59.453 45.455 0.00 0.00 37.69 1.82
348 349 2.140717 GTCGGTCTCGTTGGTTGAATT 58.859 47.619 0.00 0.00 37.69 2.17
349 350 1.343465 AGTCGGTCTCGTTGGTTGAAT 59.657 47.619 0.00 0.00 37.69 2.57
350 351 0.748450 AGTCGGTCTCGTTGGTTGAA 59.252 50.000 0.00 0.00 37.69 2.69
351 352 0.031585 CAGTCGGTCTCGTTGGTTGA 59.968 55.000 0.00 0.00 37.69 3.18
352 353 1.557443 GCAGTCGGTCTCGTTGGTTG 61.557 60.000 0.00 0.00 37.69 3.77
353 354 1.300697 GCAGTCGGTCTCGTTGGTT 60.301 57.895 0.00 0.00 37.69 3.67
354 355 2.338984 GCAGTCGGTCTCGTTGGT 59.661 61.111 0.00 0.00 37.69 3.67
355 356 2.805353 CGCAGTCGGTCTCGTTGG 60.805 66.667 0.00 0.00 37.69 3.77
371 372 2.281900 TTTTTCTCCCGCCCACCG 60.282 61.111 0.00 0.00 0.00 4.94
415 416 9.730420 GCAAAAATTATACCAGTGAATTCGTAT 57.270 29.630 0.04 5.16 0.00 3.06
416 417 8.952278 AGCAAAAATTATACCAGTGAATTCGTA 58.048 29.630 0.04 0.00 0.00 3.43
417 418 7.826690 AGCAAAAATTATACCAGTGAATTCGT 58.173 30.769 0.04 0.00 0.00 3.85
418 419 7.432252 GGAGCAAAAATTATACCAGTGAATTCG 59.568 37.037 0.04 0.00 0.00 3.34
419 420 7.706607 GGGAGCAAAAATTATACCAGTGAATTC 59.293 37.037 0.00 0.00 0.00 2.17
420 421 7.555965 GGGAGCAAAAATTATACCAGTGAATT 58.444 34.615 0.00 0.00 0.00 2.17
421 422 6.183360 CGGGAGCAAAAATTATACCAGTGAAT 60.183 38.462 0.00 0.00 0.00 2.57
422 423 5.124776 CGGGAGCAAAAATTATACCAGTGAA 59.875 40.000 0.00 0.00 0.00 3.18
423 424 4.638421 CGGGAGCAAAAATTATACCAGTGA 59.362 41.667 0.00 0.00 0.00 3.41
424 425 4.920376 CGGGAGCAAAAATTATACCAGTG 58.080 43.478 0.00 0.00 0.00 3.66
448 449 2.805353 CCAACGAGACCGACTGCG 60.805 66.667 0.00 0.00 39.50 5.18
449 450 0.038892 TAACCAACGAGACCGACTGC 60.039 55.000 0.00 0.00 39.50 4.40
450 451 2.427232 TTAACCAACGAGACCGACTG 57.573 50.000 0.00 0.00 39.50 3.51
451 452 3.672767 ATTTAACCAACGAGACCGACT 57.327 42.857 0.00 0.00 39.50 4.18
452 453 4.737353 AAATTTAACCAACGAGACCGAC 57.263 40.909 0.00 0.00 39.50 4.79
453 454 5.352016 CCATAAATTTAACCAACGAGACCGA 59.648 40.000 1.21 0.00 39.50 4.69
454 455 5.122711 ACCATAAATTTAACCAACGAGACCG 59.877 40.000 1.21 0.00 42.50 4.79
455 456 6.149807 TGACCATAAATTTAACCAACGAGACC 59.850 38.462 1.21 0.00 0.00 3.85
456 457 7.136289 TGACCATAAATTTAACCAACGAGAC 57.864 36.000 1.21 0.00 0.00 3.36
457 458 7.747155 TTGACCATAAATTTAACCAACGAGA 57.253 32.000 1.21 0.00 0.00 4.04
458 459 8.079809 ACTTTGACCATAAATTTAACCAACGAG 58.920 33.333 1.21 3.35 0.00 4.18
459 460 7.942990 ACTTTGACCATAAATTTAACCAACGA 58.057 30.769 1.21 0.00 0.00 3.85
460 461 8.484008 CAACTTTGACCATAAATTTAACCAACG 58.516 33.333 1.21 5.06 0.00 4.10
461 462 9.535878 TCAACTTTGACCATAAATTTAACCAAC 57.464 29.630 1.21 0.00 31.01 3.77
463 464 9.757227 CTTCAACTTTGACCATAAATTTAACCA 57.243 29.630 1.21 0.00 36.83 3.67
464 465 8.708742 GCTTCAACTTTGACCATAAATTTAACC 58.291 33.333 1.21 0.00 36.83 2.85
465 466 9.255304 TGCTTCAACTTTGACCATAAATTTAAC 57.745 29.630 1.21 0.00 36.83 2.01
466 467 9.255304 GTGCTTCAACTTTGACCATAAATTTAA 57.745 29.630 1.21 0.00 36.83 1.52
467 468 7.593273 CGTGCTTCAACTTTGACCATAAATTTA 59.407 33.333 0.00 0.00 36.83 1.40
468 469 6.420604 CGTGCTTCAACTTTGACCATAAATTT 59.579 34.615 0.00 0.00 36.83 1.82
469 470 5.920273 CGTGCTTCAACTTTGACCATAAATT 59.080 36.000 0.00 0.00 36.83 1.82
470 471 5.460646 CGTGCTTCAACTTTGACCATAAAT 58.539 37.500 0.00 0.00 36.83 1.40
471 472 4.261405 CCGTGCTTCAACTTTGACCATAAA 60.261 41.667 0.00 0.00 36.83 1.40
472 473 3.252215 CCGTGCTTCAACTTTGACCATAA 59.748 43.478 0.00 0.00 36.83 1.90
473 474 2.811431 CCGTGCTTCAACTTTGACCATA 59.189 45.455 0.00 0.00 36.83 2.74
474 475 1.608590 CCGTGCTTCAACTTTGACCAT 59.391 47.619 0.00 0.00 36.83 3.55
475 476 1.021202 CCGTGCTTCAACTTTGACCA 58.979 50.000 0.00 0.00 36.83 4.02
476 477 1.305201 TCCGTGCTTCAACTTTGACC 58.695 50.000 0.00 0.00 36.83 4.02
477 478 3.414549 TTTCCGTGCTTCAACTTTGAC 57.585 42.857 0.00 0.00 36.83 3.18
478 479 5.060506 TCTATTTCCGTGCTTCAACTTTGA 58.939 37.500 0.00 0.00 34.92 2.69
479 480 5.356882 TCTATTTCCGTGCTTCAACTTTG 57.643 39.130 0.00 0.00 0.00 2.77
480 481 4.455877 CCTCTATTTCCGTGCTTCAACTTT 59.544 41.667 0.00 0.00 0.00 2.66
481 482 4.003648 CCTCTATTTCCGTGCTTCAACTT 58.996 43.478 0.00 0.00 0.00 2.66
482 483 3.260884 TCCTCTATTTCCGTGCTTCAACT 59.739 43.478 0.00 0.00 0.00 3.16
483 484 3.596214 TCCTCTATTTCCGTGCTTCAAC 58.404 45.455 0.00 0.00 0.00 3.18
484 485 3.973206 TCCTCTATTTCCGTGCTTCAA 57.027 42.857 0.00 0.00 0.00 2.69
485 486 3.861840 CTTCCTCTATTTCCGTGCTTCA 58.138 45.455 0.00 0.00 0.00 3.02
486 487 2.609916 GCTTCCTCTATTTCCGTGCTTC 59.390 50.000 0.00 0.00 0.00 3.86
487 488 2.027192 TGCTTCCTCTATTTCCGTGCTT 60.027 45.455 0.00 0.00 0.00 3.91
488 489 1.555075 TGCTTCCTCTATTTCCGTGCT 59.445 47.619 0.00 0.00 0.00 4.40
489 490 1.666189 GTGCTTCCTCTATTTCCGTGC 59.334 52.381 0.00 0.00 0.00 5.34
490 491 3.252974 AGTGCTTCCTCTATTTCCGTG 57.747 47.619 0.00 0.00 0.00 4.94
491 492 6.919775 ATATAGTGCTTCCTCTATTTCCGT 57.080 37.500 0.00 0.00 31.97 4.69
492 493 8.499162 CAAAATATAGTGCTTCCTCTATTTCCG 58.501 37.037 0.00 0.00 31.97 4.30
493 494 8.787852 CCAAAATATAGTGCTTCCTCTATTTCC 58.212 37.037 0.00 0.00 31.97 3.13
494 495 9.561069 TCCAAAATATAGTGCTTCCTCTATTTC 57.439 33.333 0.00 0.00 31.97 2.17
495 496 9.920946 TTCCAAAATATAGTGCTTCCTCTATTT 57.079 29.630 0.00 0.00 31.97 1.40
496 497 9.343539 GTTCCAAAATATAGTGCTTCCTCTATT 57.656 33.333 0.00 0.00 31.97 1.73
497 498 7.657761 CGTTCCAAAATATAGTGCTTCCTCTAT 59.342 37.037 0.00 0.00 33.61 1.98
498 499 6.984474 CGTTCCAAAATATAGTGCTTCCTCTA 59.016 38.462 0.00 0.00 0.00 2.43
499 500 5.817816 CGTTCCAAAATATAGTGCTTCCTCT 59.182 40.000 0.00 0.00 0.00 3.69
500 501 5.007724 CCGTTCCAAAATATAGTGCTTCCTC 59.992 44.000 0.00 0.00 0.00 3.71
501 502 4.881850 CCGTTCCAAAATATAGTGCTTCCT 59.118 41.667 0.00 0.00 0.00 3.36
502 503 4.879545 TCCGTTCCAAAATATAGTGCTTCC 59.120 41.667 0.00 0.00 0.00 3.46
503 504 5.815740 TCTCCGTTCCAAAATATAGTGCTTC 59.184 40.000 0.00 0.00 0.00 3.86
504 505 5.741011 TCTCCGTTCCAAAATATAGTGCTT 58.259 37.500 0.00 0.00 0.00 3.91
505 506 5.353394 TCTCCGTTCCAAAATATAGTGCT 57.647 39.130 0.00 0.00 0.00 4.40
506 507 6.038271 ACATTCTCCGTTCCAAAATATAGTGC 59.962 38.462 0.00 0.00 0.00 4.40
507 508 7.553881 ACATTCTCCGTTCCAAAATATAGTG 57.446 36.000 0.00 0.00 0.00 2.74
508 509 9.490379 GATACATTCTCCGTTCCAAAATATAGT 57.510 33.333 0.00 0.00 0.00 2.12
509 510 9.489084 TGATACATTCTCCGTTCCAAAATATAG 57.511 33.333 0.00 0.00 0.00 1.31
510 511 9.839817 TTGATACATTCTCCGTTCCAAAATATA 57.160 29.630 0.00 0.00 0.00 0.86
511 512 8.746052 TTGATACATTCTCCGTTCCAAAATAT 57.254 30.769 0.00 0.00 0.00 1.28
512 513 8.455682 GTTTGATACATTCTCCGTTCCAAAATA 58.544 33.333 0.00 0.00 0.00 1.40
513 514 7.312899 GTTTGATACATTCTCCGTTCCAAAAT 58.687 34.615 0.00 0.00 0.00 1.82
514 515 6.294286 GGTTTGATACATTCTCCGTTCCAAAA 60.294 38.462 0.00 0.00 0.00 2.44
515 516 5.182380 GGTTTGATACATTCTCCGTTCCAAA 59.818 40.000 0.00 0.00 0.00 3.28
516 517 4.698304 GGTTTGATACATTCTCCGTTCCAA 59.302 41.667 0.00 0.00 0.00 3.53
517 518 4.258543 GGTTTGATACATTCTCCGTTCCA 58.741 43.478 0.00 0.00 0.00 3.53
518 519 4.094442 GTGGTTTGATACATTCTCCGTTCC 59.906 45.833 0.00 0.00 0.00 3.62
519 520 4.693566 TGTGGTTTGATACATTCTCCGTTC 59.306 41.667 0.00 0.00 0.00 3.95
520 521 4.647611 TGTGGTTTGATACATTCTCCGTT 58.352 39.130 0.00 0.00 0.00 4.44
521 522 4.280436 TGTGGTTTGATACATTCTCCGT 57.720 40.909 0.00 0.00 0.00 4.69
522 523 5.818136 AATGTGGTTTGATACATTCTCCG 57.182 39.130 0.00 0.00 42.17 4.63
523 524 7.156876 TGAAATGTGGTTTGATACATTCTCC 57.843 36.000 0.00 0.00 44.32 3.71
535 536 9.941325 TGCTAAATTCATTATGAAATGTGGTTT 57.059 25.926 11.88 8.97 40.12 3.27
536 537 9.941325 TTGCTAAATTCATTATGAAATGTGGTT 57.059 25.926 11.88 0.00 40.12 3.67
641 642 7.750458 CGTGTCTGCATATAATTTTCTTTGTGT 59.250 33.333 0.00 0.00 0.00 3.72
642 643 7.253420 GCGTGTCTGCATATAATTTTCTTTGTG 60.253 37.037 0.00 0.00 34.15 3.33
643 644 6.747280 GCGTGTCTGCATATAATTTTCTTTGT 59.253 34.615 0.00 0.00 34.15 2.83
644 645 6.075936 CGCGTGTCTGCATATAATTTTCTTTG 60.076 38.462 0.00 0.00 34.15 2.77
645 646 5.965334 CGCGTGTCTGCATATAATTTTCTTT 59.035 36.000 0.00 0.00 34.15 2.52
646 647 5.501715 CGCGTGTCTGCATATAATTTTCTT 58.498 37.500 0.00 0.00 34.15 2.52
647 648 4.552767 GCGCGTGTCTGCATATAATTTTCT 60.553 41.667 8.43 0.00 34.15 2.52
648 649 3.659444 GCGCGTGTCTGCATATAATTTTC 59.341 43.478 8.43 0.00 34.15 2.29
649 650 3.548014 GGCGCGTGTCTGCATATAATTTT 60.548 43.478 8.43 0.00 34.15 1.82
650 651 2.032030 GGCGCGTGTCTGCATATAATTT 60.032 45.455 8.43 0.00 34.15 1.82
651 652 1.531149 GGCGCGTGTCTGCATATAATT 59.469 47.619 8.43 0.00 34.15 1.40
652 653 1.148310 GGCGCGTGTCTGCATATAAT 58.852 50.000 8.43 0.00 34.15 1.28
653 654 0.104120 AGGCGCGTGTCTGCATATAA 59.896 50.000 8.43 0.00 34.15 0.98
654 655 0.318699 GAGGCGCGTGTCTGCATATA 60.319 55.000 8.35 0.00 34.15 0.86
655 656 1.592669 GAGGCGCGTGTCTGCATAT 60.593 57.895 8.35 0.00 34.15 1.78
656 657 2.202743 GAGGCGCGTGTCTGCATA 60.203 61.111 8.35 0.00 34.15 3.14
657 658 3.881952 TTGAGGCGCGTGTCTGCAT 62.882 57.895 8.35 0.00 34.15 3.96
658 659 3.952886 TATTTGAGGCGCGTGTCTGCA 62.953 52.381 8.35 2.94 34.15 4.41
659 660 1.358725 TATTTGAGGCGCGTGTCTGC 61.359 55.000 8.35 0.00 0.00 4.26
660 661 1.258982 GATATTTGAGGCGCGTGTCTG 59.741 52.381 8.35 0.00 0.00 3.51
661 662 1.137086 AGATATTTGAGGCGCGTGTCT 59.863 47.619 7.63 0.87 0.00 3.41
662 663 1.571919 AGATATTTGAGGCGCGTGTC 58.428 50.000 7.63 5.33 0.00 3.67
663 664 2.882927 TAGATATTTGAGGCGCGTGT 57.117 45.000 7.63 0.00 0.00 4.49
664 665 4.732285 ATTTAGATATTTGAGGCGCGTG 57.268 40.909 7.63 0.00 0.00 5.34
665 666 5.510671 CAAATTTAGATATTTGAGGCGCGT 58.489 37.500 8.43 0.27 44.49 6.01
666 667 4.379793 GCAAATTTAGATATTTGAGGCGCG 59.620 41.667 0.00 0.00 44.49 6.86
667 668 5.523369 AGCAAATTTAGATATTTGAGGCGC 58.477 37.500 11.97 0.00 44.49 6.53
668 669 7.195646 TCAAGCAAATTTAGATATTTGAGGCG 58.804 34.615 11.97 0.00 44.49 5.52
669 670 8.811378 GTTCAAGCAAATTTAGATATTTGAGGC 58.189 33.333 11.97 0.00 44.49 4.70
670 671 9.013490 CGTTCAAGCAAATTTAGATATTTGAGG 57.987 33.333 11.97 2.49 44.49 3.86
671 672 9.559958 ACGTTCAAGCAAATTTAGATATTTGAG 57.440 29.630 11.97 3.06 44.49 3.02
706 707 3.366679 CCATGAGCGAGCAAATTCAGTTT 60.367 43.478 0.00 0.00 0.00 2.66
707 708 2.163010 CCATGAGCGAGCAAATTCAGTT 59.837 45.455 0.00 0.00 0.00 3.16
708 709 1.741706 CCATGAGCGAGCAAATTCAGT 59.258 47.619 0.00 0.00 0.00 3.41
709 710 1.741706 ACCATGAGCGAGCAAATTCAG 59.258 47.619 0.00 0.00 0.00 3.02
710 711 1.739466 GACCATGAGCGAGCAAATTCA 59.261 47.619 0.00 0.00 0.00 2.57
711 712 1.739466 TGACCATGAGCGAGCAAATTC 59.261 47.619 0.00 0.00 0.00 2.17
912 960 1.001974 GGTGGTTTGAAAATGGAGGCC 59.998 52.381 0.00 0.00 0.00 5.19
939 994 2.331132 GGTGGAAGCTGAGCTGTGC 61.331 63.158 8.16 4.43 39.62 4.57
985 1041 2.165998 GTCCATCTTGCTTCCTTGCTT 58.834 47.619 0.00 0.00 0.00 3.91
992 1055 1.986575 GCTGCCGTCCATCTTGCTTC 61.987 60.000 0.00 0.00 0.00 3.86
1241 1344 1.075600 AGAGAGGCAGGAGTAGGGC 60.076 63.158 0.00 0.00 0.00 5.19
1246 1349 2.366570 GGGGAGAGAGGCAGGAGT 59.633 66.667 0.00 0.00 0.00 3.85
1250 1353 3.151022 GACCGGGGAGAGAGGCAG 61.151 72.222 6.32 0.00 0.00 4.85
1251 1354 3.673597 AGACCGGGGAGAGAGGCA 61.674 66.667 6.32 0.00 0.00 4.75
1253 1356 1.000486 TTCAGACCGGGGAGAGAGG 60.000 63.158 6.32 0.00 0.00 3.69
1272 1389 1.586154 AAACAAGATCGGCGGCTTGG 61.586 55.000 31.24 20.26 44.33 3.61
1274 1391 0.240945 CAAAACAAGATCGGCGGCTT 59.759 50.000 7.21 8.65 0.00 4.35
1618 1757 7.075741 CACACCACAGCTAACTTAATTAACAC 58.924 38.462 0.00 0.00 0.00 3.32
1622 1761 6.428771 GGAACACACCACAGCTAACTTAATTA 59.571 38.462 0.00 0.00 0.00 1.40
1623 1762 5.240844 GGAACACACCACAGCTAACTTAATT 59.759 40.000 0.00 0.00 0.00 1.40
1624 1763 4.760204 GGAACACACCACAGCTAACTTAAT 59.240 41.667 0.00 0.00 0.00 1.40
1656 1795 4.207841 GCAAAGCAAAAGTACAAGCTTGAG 59.792 41.667 32.50 7.94 45.73 3.02
1658 1797 3.245990 GGCAAAGCAAAAGTACAAGCTTG 59.754 43.478 24.84 24.84 45.73 4.01
1667 1806 2.421314 GCGGGGCAAAGCAAAAGT 59.579 55.556 0.00 0.00 0.00 2.66
1711 1850 4.285517 TCAGAAGAACAGAGGAAGCAAGAT 59.714 41.667 0.00 0.00 0.00 2.40
1746 1885 8.801715 ACATTTTAACAAACACTGCATTAGAG 57.198 30.769 0.00 0.00 0.00 2.43
1822 1961 9.739276 TGTTCCTAGATACAAATTTTCAGTGAT 57.261 29.630 0.00 0.00 0.00 3.06
1823 1962 9.219603 CTGTTCCTAGATACAAATTTTCAGTGA 57.780 33.333 0.00 0.00 0.00 3.41
1824 1963 9.003658 ACTGTTCCTAGATACAAATTTTCAGTG 57.996 33.333 0.00 0.00 0.00 3.66
1825 1964 9.003658 CACTGTTCCTAGATACAAATTTTCAGT 57.996 33.333 0.00 0.00 0.00 3.41
1826 1965 9.003658 ACACTGTTCCTAGATACAAATTTTCAG 57.996 33.333 0.00 0.00 0.00 3.02
1827 1966 8.918202 ACACTGTTCCTAGATACAAATTTTCA 57.082 30.769 0.00 0.00 0.00 2.69
1832 2076 7.259088 AGGAACACTGTTCCTAGATACAAAT 57.741 36.000 33.49 12.51 46.48 2.32
1844 2113 2.533266 TGCAGAGAGGAACACTGTTC 57.467 50.000 12.81 12.81 38.96 3.18
1845 2114 3.144506 CAATGCAGAGAGGAACACTGTT 58.855 45.455 0.00 0.00 38.96 3.16
1866 2135 9.677567 TTTCAGATTCTATTTGTAACTTGCAAC 57.322 29.630 0.00 0.00 0.00 4.17
1874 2143 8.596271 TGTCACGTTTCAGATTCTATTTGTAA 57.404 30.769 0.00 0.00 0.00 2.41
1875 2144 8.596271 TTGTCACGTTTCAGATTCTATTTGTA 57.404 30.769 0.00 0.00 0.00 2.41
1879 2148 9.214957 TGTATTTGTCACGTTTCAGATTCTATT 57.785 29.630 0.00 0.00 0.00 1.73
1881 2150 8.596271 TTGTATTTGTCACGTTTCAGATTCTA 57.404 30.769 0.00 0.00 0.00 2.10
1883 2152 8.728088 ATTTGTATTTGTCACGTTTCAGATTC 57.272 30.769 0.00 0.00 0.00 2.52
1886 2155 9.047371 TCTAATTTGTATTTGTCACGTTTCAGA 57.953 29.630 0.00 0.00 0.00 3.27
1887 2156 9.825972 ATCTAATTTGTATTTGTCACGTTTCAG 57.174 29.630 0.00 0.00 0.00 3.02
1900 2178 9.733556 TCTGTACACAACCATCTAATTTGTATT 57.266 29.630 0.00 0.00 32.19 1.89
1901 2179 9.905713 ATCTGTACACAACCATCTAATTTGTAT 57.094 29.630 0.00 0.00 32.19 2.29
1902 2180 9.733556 AATCTGTACACAACCATCTAATTTGTA 57.266 29.630 0.00 0.00 32.19 2.41
1903 2181 8.635765 AATCTGTACACAACCATCTAATTTGT 57.364 30.769 0.00 0.00 33.69 2.83
1904 2182 9.912634 AAAATCTGTACACAACCATCTAATTTG 57.087 29.630 0.00 0.00 0.00 2.32
1907 2185 9.077885 ACAAAAATCTGTACACAACCATCTAAT 57.922 29.630 0.00 0.00 0.00 1.73
1919 2197 7.446931 TCAGGCATAAGAACAAAAATCTGTACA 59.553 33.333 0.00 0.00 0.00 2.90
1929 2207 5.241506 CCTTCAAGTCAGGCATAAGAACAAA 59.758 40.000 0.00 0.00 0.00 2.83
1930 2208 4.761739 CCTTCAAGTCAGGCATAAGAACAA 59.238 41.667 0.00 0.00 0.00 2.83
1931 2209 4.326826 CCTTCAAGTCAGGCATAAGAACA 58.673 43.478 0.00 0.00 0.00 3.18
1932 2210 4.954092 CCTTCAAGTCAGGCATAAGAAC 57.046 45.455 0.00 0.00 0.00 3.01
1959 2237 9.860898 AATCTTGAAATGTTATTTTGTAGCCTC 57.139 29.630 0.00 0.00 0.00 4.70
2004 2283 2.618241 TGCAGATTTGTTGGTGTGACTC 59.382 45.455 0.00 0.00 0.00 3.36
2013 2292 7.063544 GGAGTACTAACTACTGCAGATTTGTTG 59.936 40.741 23.35 14.14 42.14 3.33
2023 2302 5.388408 ACAGTTGGAGTACTAACTACTGC 57.612 43.478 26.44 3.51 43.96 4.40
2043 2322 5.723672 TGTAACACAAACTTTTTGGGACA 57.276 34.783 7.88 0.29 0.00 4.02
2109 2388 4.748892 ACAGTTGTCTAGATTCGGATGTG 58.251 43.478 0.00 0.00 0.00 3.21
2116 2395 7.093992 AGCTTGTCTTACAGTTGTCTAGATTC 58.906 38.462 0.00 0.00 0.00 2.52
2128 2407 5.464168 CATCCCAAAAAGCTTGTCTTACAG 58.536 41.667 0.00 0.00 33.88 2.74
2130 2409 4.522789 TCCATCCCAAAAAGCTTGTCTTAC 59.477 41.667 0.00 0.00 33.88 2.34
2174 2453 6.127647 ACAATGGCCATTTAGACATACTGTTG 60.128 38.462 28.68 15.49 0.00 3.33
2212 2491 3.912248 ACCATGTCTCTCCCGTACTTAT 58.088 45.455 0.00 0.00 0.00 1.73
2213 2492 3.377253 ACCATGTCTCTCCCGTACTTA 57.623 47.619 0.00 0.00 0.00 2.24
2214 2493 2.233305 ACCATGTCTCTCCCGTACTT 57.767 50.000 0.00 0.00 0.00 2.24
2215 2494 2.100989 GAACCATGTCTCTCCCGTACT 58.899 52.381 0.00 0.00 0.00 2.73
2216 2495 2.100989 AGAACCATGTCTCTCCCGTAC 58.899 52.381 0.00 0.00 0.00 3.67
2219 2498 1.276421 ACAAGAACCATGTCTCTCCCG 59.724 52.381 0.00 0.00 0.00 5.14
2247 2526 6.499234 TCAACACACATAATGGTCATTCAG 57.501 37.500 0.00 0.00 32.50 3.02
2282 2605 8.901472 AATAGATTGGCATATCTAGTACTCCA 57.099 34.615 17.92 0.00 39.72 3.86
2345 2668 3.896888 ACAGAAATGGTTCTTGATGGCAA 59.103 39.130 0.00 0.00 41.55 4.52
2362 2685 7.286546 TGATTCCTTCACACCATAAAAACAGAA 59.713 33.333 0.00 0.00 0.00 3.02
2480 2806 2.661718 CCCCTGTGTTGTTGTTACCTT 58.338 47.619 0.00 0.00 0.00 3.50
2487 2813 1.326213 TTGGTGCCCCTGTGTTGTTG 61.326 55.000 0.00 0.00 0.00 3.33
2505 2831 4.494484 GCGAAATATTCTTTTGTGGCCTT 58.506 39.130 3.32 0.00 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.