Multiple sequence alignment - TraesCS1A01G038000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G038000 chr1A 100.000 3942 0 0 1 3942 20992207 20988266 0 7280
1 TraesCS1A01G038000 chr5A 97.677 1722 30 6 1095 2815 237539799 237538087 0 2950
2 TraesCS1A01G038000 chr5A 97.437 1717 35 5 1095 2810 237532820 237531112 0 2918
3 TraesCS1A01G038000 chr5A 97.216 1724 36 5 1095 2815 548260574 548258860 0 2907
4 TraesCS1A01G038000 chr5A 95.807 1097 43 2 1 1094 1240763 1241859 0 1768
5 TraesCS1A01G038000 chr5A 95.795 1094 45 1 1 1094 33881955 33880863 0 1764
6 TraesCS1A01G038000 chr5A 95.521 1094 49 0 1 1094 23905548 23904455 0 1749
7 TraesCS1A01G038000 chr5A 95.430 1094 50 0 1 1094 606886417 606885324 0 1744
8 TraesCS1A01G038000 chr5A 94.923 453 22 1 2810 3262 66824415 66824866 0 708
9 TraesCS1A01G038000 chr4A 97.506 1724 31 7 1093 2815 558141213 558142925 0 2935
10 TraesCS1A01G038000 chr4A 97.436 1716 31 8 1095 2809 558148220 558149923 0 2913
11 TraesCS1A01G038000 chr6A 97.387 1722 34 6 1095 2814 350964429 350966141 0 2920
12 TraesCS1A01G038000 chr6A 97.385 1721 34 5 1095 2814 346144290 346142580 0 2918
13 TraesCS1A01G038000 chr6A 97.100 1724 37 7 1092 2814 346151284 346149573 0 2894
14 TraesCS1A01G038000 chr6A 94.889 450 23 0 2810 3259 472970425 472970874 0 704
15 TraesCS1A01G038000 chr2A 97.026 1715 40 6 1095 2809 1914073 1915776 0 2874
16 TraesCS1A01G038000 chr2A 96.161 1094 41 1 1 1094 767163601 767162509 0 1786
17 TraesCS1A01G038000 chr2A 95.521 1094 49 0 1 1094 619740913 619739820 0 1749
18 TraesCS1A01G038000 chr2A 94.889 450 22 1 2809 3258 38299891 38300339 0 702
19 TraesCS1A01G038000 chr3A 96.164 1095 41 1 1 1094 11599031 11597937 0 1788
20 TraesCS1A01G038000 chr3A 95.982 1095 43 1 1 1094 11605919 11604825 0 1777
21 TraesCS1A01G038000 chr3A 95.803 1096 44 1 1 1096 684743942 684745035 0 1768
22 TraesCS1A01G038000 chr3A 95.133 452 22 0 2810 3261 27583552 27584003 0 713
23 TraesCS1A01G038000 chr1D 90.816 686 47 11 3260 3942 19139366 19138694 0 904
24 TraesCS1A01G038000 chr1B 90.159 691 54 9 3259 3942 28590953 28590270 0 887
25 TraesCS1A01G038000 chr7A 94.912 452 22 1 2810 3260 677975484 677975935 0 706
26 TraesCS1A01G038000 chr7A 94.678 451 23 1 2810 3259 71222199 71222649 0 699
27 TraesCS1A01G038000 chr5B 94.678 451 23 1 2810 3259 492815846 492815396 0 699
28 TraesCS1A01G038000 chr4B 94.667 450 24 0 2810 3259 604144073 604144522 0 699
29 TraesCS1A01G038000 chr4B 94.457 451 25 0 2810 3260 85986584 85987034 0 695


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G038000 chr1A 20988266 20992207 3941 True 7280 7280 100.000 1 3942 1 chr1A.!!$R1 3941
1 TraesCS1A01G038000 chr5A 237538087 237539799 1712 True 2950 2950 97.677 1095 2815 1 chr5A.!!$R4 1720
2 TraesCS1A01G038000 chr5A 237531112 237532820 1708 True 2918 2918 97.437 1095 2810 1 chr5A.!!$R3 1715
3 TraesCS1A01G038000 chr5A 548258860 548260574 1714 True 2907 2907 97.216 1095 2815 1 chr5A.!!$R5 1720
4 TraesCS1A01G038000 chr5A 1240763 1241859 1096 False 1768 1768 95.807 1 1094 1 chr5A.!!$F1 1093
5 TraesCS1A01G038000 chr5A 33880863 33881955 1092 True 1764 1764 95.795 1 1094 1 chr5A.!!$R2 1093
6 TraesCS1A01G038000 chr5A 23904455 23905548 1093 True 1749 1749 95.521 1 1094 1 chr5A.!!$R1 1093
7 TraesCS1A01G038000 chr5A 606885324 606886417 1093 True 1744 1744 95.430 1 1094 1 chr5A.!!$R6 1093
8 TraesCS1A01G038000 chr4A 558141213 558142925 1712 False 2935 2935 97.506 1093 2815 1 chr4A.!!$F1 1722
9 TraesCS1A01G038000 chr4A 558148220 558149923 1703 False 2913 2913 97.436 1095 2809 1 chr4A.!!$F2 1714
10 TraesCS1A01G038000 chr6A 350964429 350966141 1712 False 2920 2920 97.387 1095 2814 1 chr6A.!!$F1 1719
11 TraesCS1A01G038000 chr6A 346142580 346144290 1710 True 2918 2918 97.385 1095 2814 1 chr6A.!!$R1 1719
12 TraesCS1A01G038000 chr6A 346149573 346151284 1711 True 2894 2894 97.100 1092 2814 1 chr6A.!!$R2 1722
13 TraesCS1A01G038000 chr2A 1914073 1915776 1703 False 2874 2874 97.026 1095 2809 1 chr2A.!!$F1 1714
14 TraesCS1A01G038000 chr2A 767162509 767163601 1092 True 1786 1786 96.161 1 1094 1 chr2A.!!$R2 1093
15 TraesCS1A01G038000 chr2A 619739820 619740913 1093 True 1749 1749 95.521 1 1094 1 chr2A.!!$R1 1093
16 TraesCS1A01G038000 chr3A 11597937 11599031 1094 True 1788 1788 96.164 1 1094 1 chr3A.!!$R1 1093
17 TraesCS1A01G038000 chr3A 11604825 11605919 1094 True 1777 1777 95.982 1 1094 1 chr3A.!!$R2 1093
18 TraesCS1A01G038000 chr3A 684743942 684745035 1093 False 1768 1768 95.803 1 1096 1 chr3A.!!$F2 1095
19 TraesCS1A01G038000 chr1D 19138694 19139366 672 True 904 904 90.816 3260 3942 1 chr1D.!!$R1 682
20 TraesCS1A01G038000 chr1B 28590270 28590953 683 True 887 887 90.159 3259 3942 1 chr1B.!!$R1 683

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
981 987 2.899838 GTGTGGGTGCTGCGAACA 60.900 61.111 0.0 0.0 0.00 3.18 F
2810 2823 0.817634 CTGCAACGTTCCCCAACAGA 60.818 55.000 0.0 0.0 32.14 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2838 2851 0.036858 GCAAGGAGCTTCGTCTTCCT 60.037 55.0 0.0 0.0 41.15 3.36 R
3704 3723 0.320771 GGAAACTCCTCTCGCAAGCA 60.321 55.0 0.0 0.0 32.53 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 7.011763 CAGATATGTTGGATCATTCGAAACTGT 59.988 37.037 0.00 0.00 0.00 3.55
240 245 8.772250 TGAAGGATCTATTTATTGGAACTCAGT 58.228 33.333 0.00 0.00 0.00 3.41
770 775 4.965814 ACTCTGCATCTTGACTTCTTCAA 58.034 39.130 0.00 0.00 42.26 2.69
774 779 7.280428 ACTCTGCATCTTGACTTCTTCAATATG 59.720 37.037 7.61 7.61 45.35 1.78
860 866 6.012658 ACACATTTTCAATACAGCAATCGT 57.987 33.333 0.00 0.00 0.00 3.73
864 870 7.274033 CACATTTTCAATACAGCAATCGTCAAT 59.726 33.333 0.00 0.00 0.00 2.57
875 881 8.668510 ACAGCAATCGTCAATCTAAGATAATT 57.331 30.769 0.00 0.00 0.00 1.40
981 987 2.899838 GTGTGGGTGCTGCGAACA 60.900 61.111 0.00 0.00 0.00 3.18
1040 1046 1.995066 ATGCCCTGGACGTGGATGA 60.995 57.895 0.00 0.00 0.00 2.92
1533 1540 3.399440 AGGTAGACTACGGGTATCTCG 57.601 52.381 6.54 0.00 0.00 4.04
1830 1837 3.744942 GTGGTTCATCCGATGAGATCATG 59.255 47.826 10.91 0.00 40.94 3.07
2133 2140 1.197812 GGTATTGTACCGGGACCACT 58.802 55.000 16.09 0.67 39.39 4.00
2266 2274 4.815108 GCGCCTAGGGTTTGGGGG 62.815 72.222 11.72 0.00 36.87 5.40
2427 2437 3.264193 ACATCATACCTCAGTCTTTGGCA 59.736 43.478 0.00 0.00 0.00 4.92
2448 2458 1.344496 CCTCCCTCTCCCCTGTTACAT 60.344 57.143 0.00 0.00 0.00 2.29
2449 2459 2.043227 CTCCCTCTCCCCTGTTACATC 58.957 57.143 0.00 0.00 0.00 3.06
2450 2460 1.651770 TCCCTCTCCCCTGTTACATCT 59.348 52.381 0.00 0.00 0.00 2.90
2451 2461 2.043227 CCCTCTCCCCTGTTACATCTC 58.957 57.143 0.00 0.00 0.00 2.75
2510 2520 2.685366 CCCTGCATCCACCACCAT 59.315 61.111 0.00 0.00 0.00 3.55
2763 2773 8.313292 GCTAGATGAACTCATAGATGGATCTTT 58.687 37.037 0.00 0.00 38.32 2.52
2810 2823 0.817634 CTGCAACGTTCCCCAACAGA 60.818 55.000 0.00 0.00 32.14 3.41
2820 2833 2.514592 CCAACAGATGGCGGCGAT 60.515 61.111 12.98 0.00 43.80 4.58
2821 2834 2.711311 CAACAGATGGCGGCGATG 59.289 61.111 12.98 5.37 0.00 3.84
2822 2835 2.514592 AACAGATGGCGGCGATGG 60.515 61.111 12.98 0.00 0.00 3.51
2832 2845 3.353836 GGCGATGGCACGTGTGTT 61.354 61.111 18.38 1.38 42.47 3.32
2833 2846 2.173382 GCGATGGCACGTGTGTTC 59.827 61.111 18.38 10.16 39.62 3.18
2834 2847 2.860293 CGATGGCACGTGTGTTCC 59.140 61.111 18.38 10.22 0.00 3.62
2835 2848 2.677003 CGATGGCACGTGTGTTCCC 61.677 63.158 18.38 9.82 0.00 3.97
2836 2849 2.668212 ATGGCACGTGTGTTCCCG 60.668 61.111 18.38 0.00 0.00 5.14
2837 2850 3.171828 ATGGCACGTGTGTTCCCGA 62.172 57.895 18.38 0.00 0.00 5.14
2838 2851 2.589442 GGCACGTGTGTTCCCGAA 60.589 61.111 18.38 0.00 0.00 4.30
2839 2852 2.604174 GGCACGTGTGTTCCCGAAG 61.604 63.158 18.38 0.00 0.00 3.79
2853 2866 3.037485 CGAAGGAAGACGAAGCTCC 57.963 57.895 0.00 0.00 0.00 4.70
2854 2867 0.528470 CGAAGGAAGACGAAGCTCCT 59.472 55.000 0.00 0.00 0.00 3.69
2855 2868 1.067495 CGAAGGAAGACGAAGCTCCTT 60.067 52.381 10.98 10.98 42.80 3.36
2856 2869 2.342179 GAAGGAAGACGAAGCTCCTTG 58.658 52.381 14.50 0.00 40.49 3.61
2857 2870 0.036858 AGGAAGACGAAGCTCCTTGC 60.037 55.000 0.00 0.00 43.29 4.01
2864 2877 2.360475 AAGCTCCTTGCGCTTCCC 60.360 61.111 9.73 0.00 43.79 3.97
2865 2878 3.927481 AAGCTCCTTGCGCTTCCCC 62.927 63.158 9.73 0.00 43.79 4.81
2867 2880 4.033776 CTCCTTGCGCTTCCCCCA 62.034 66.667 9.73 0.00 0.00 4.96
2868 2881 3.338250 TCCTTGCGCTTCCCCCAT 61.338 61.111 9.73 0.00 0.00 4.00
2869 2882 2.830370 CCTTGCGCTTCCCCCATC 60.830 66.667 9.73 0.00 0.00 3.51
2870 2883 3.204827 CTTGCGCTTCCCCCATCG 61.205 66.667 9.73 0.00 0.00 3.84
2871 2884 3.976701 CTTGCGCTTCCCCCATCGT 62.977 63.158 9.73 0.00 0.00 3.73
2872 2885 4.776322 TGCGCTTCCCCCATCGTG 62.776 66.667 9.73 0.00 0.00 4.35
2875 2888 4.115199 GCTTCCCCCATCGTGGCT 62.115 66.667 0.00 0.00 35.79 4.75
2876 2889 2.742116 GCTTCCCCCATCGTGGCTA 61.742 63.158 0.00 0.00 35.79 3.93
2877 2890 1.447643 CTTCCCCCATCGTGGCTAG 59.552 63.158 0.00 0.00 35.79 3.42
2878 2891 2.666596 CTTCCCCCATCGTGGCTAGC 62.667 65.000 6.04 6.04 35.79 3.42
2879 2892 4.609018 CCCCCATCGTGGCTAGCG 62.609 72.222 9.00 0.00 35.79 4.26
2880 2893 3.849951 CCCCATCGTGGCTAGCGT 61.850 66.667 9.00 0.00 35.79 5.07
2881 2894 2.586079 CCCATCGTGGCTAGCGTG 60.586 66.667 9.00 0.54 35.79 5.34
2882 2895 3.264897 CCATCGTGGCTAGCGTGC 61.265 66.667 9.00 0.03 0.00 5.34
2883 2896 2.509111 CATCGTGGCTAGCGTGCA 60.509 61.111 9.00 0.00 34.04 4.57
2884 2897 1.884464 CATCGTGGCTAGCGTGCAT 60.884 57.895 9.00 0.00 34.04 3.96
2885 2898 1.884464 ATCGTGGCTAGCGTGCATG 60.884 57.895 9.00 6.97 34.04 4.06
2886 2899 2.296814 ATCGTGGCTAGCGTGCATGA 62.297 55.000 10.93 14.30 34.04 3.07
2887 2900 1.884464 CGTGGCTAGCGTGCATGAT 60.884 57.895 10.93 5.86 34.04 2.45
2888 2901 1.645455 GTGGCTAGCGTGCATGATG 59.355 57.895 10.93 0.00 34.04 3.07
2889 2902 1.524393 TGGCTAGCGTGCATGATGG 60.524 57.895 10.93 6.64 34.04 3.51
2890 2903 2.635899 GCTAGCGTGCATGATGGC 59.364 61.111 16.86 16.86 0.00 4.40
2891 2904 2.933666 CTAGCGTGCATGATGGCG 59.066 61.111 10.93 0.00 36.28 5.69
2892 2905 2.588596 TAGCGTGCATGATGGCGG 60.589 61.111 10.93 0.00 36.28 6.13
2895 2908 4.246206 CGTGCATGATGGCGGCAG 62.246 66.667 19.29 4.49 38.38 4.85
2896 2909 3.896133 GTGCATGATGGCGGCAGG 61.896 66.667 19.29 8.06 38.38 4.85
2913 2926 2.962253 GCGGCTCGCGATTAGCTT 60.962 61.111 10.36 0.00 44.55 3.74
2914 2927 2.933203 GCGGCTCGCGATTAGCTTC 61.933 63.158 10.36 2.28 44.55 3.86
2915 2928 2.303676 CGGCTCGCGATTAGCTTCC 61.304 63.158 10.36 1.65 45.59 3.46
2916 2929 1.068250 GGCTCGCGATTAGCTTCCT 59.932 57.895 10.36 0.00 45.59 3.36
2917 2930 0.314302 GGCTCGCGATTAGCTTCCTA 59.686 55.000 10.36 0.00 45.59 2.94
2918 2931 1.269621 GGCTCGCGATTAGCTTCCTAA 60.270 52.381 10.36 0.00 45.59 2.69
2919 2932 2.610727 GGCTCGCGATTAGCTTCCTAAT 60.611 50.000 10.36 0.00 44.80 1.73
2920 2933 3.367087 GGCTCGCGATTAGCTTCCTAATA 60.367 47.826 10.36 0.00 42.76 0.98
2921 2934 3.854809 GCTCGCGATTAGCTTCCTAATAG 59.145 47.826 10.36 0.00 42.76 1.73
2922 2935 4.416620 CTCGCGATTAGCTTCCTAATAGG 58.583 47.826 10.36 0.00 42.76 2.57
2923 2936 4.077108 TCGCGATTAGCTTCCTAATAGGA 58.923 43.478 3.71 4.61 42.76 2.94
2924 2937 4.705507 TCGCGATTAGCTTCCTAATAGGAT 59.294 41.667 10.21 0.00 42.76 3.24
2925 2938 4.800993 CGCGATTAGCTTCCTAATAGGATG 59.199 45.833 10.21 13.33 42.76 3.51
2926 2939 5.112686 GCGATTAGCTTCCTAATAGGATGG 58.887 45.833 19.76 12.78 42.76 3.51
2927 2940 5.105310 GCGATTAGCTTCCTAATAGGATGGA 60.105 44.000 19.76 2.28 42.76 3.41
2928 2941 6.407525 GCGATTAGCTTCCTAATAGGATGGAT 60.408 42.308 19.76 12.85 42.76 3.41
2929 2942 6.983307 CGATTAGCTTCCTAATAGGATGGATG 59.017 42.308 19.76 6.81 45.34 3.51
2930 2943 4.566426 AGCTTCCTAATAGGATGGATGC 57.434 45.455 19.76 14.11 45.34 3.91
2931 2944 3.055530 AGCTTCCTAATAGGATGGATGCG 60.056 47.826 19.76 2.61 45.34 4.73
2932 2945 3.307059 GCTTCCTAATAGGATGGATGCGT 60.307 47.826 19.76 0.00 45.34 5.24
2933 2946 4.499183 CTTCCTAATAGGATGGATGCGTC 58.501 47.826 10.21 0.00 45.34 5.19
2934 2947 2.832129 TCCTAATAGGATGGATGCGTCC 59.168 50.000 18.69 18.69 40.06 4.79
2935 2948 2.417379 CCTAATAGGATGGATGCGTCCG 60.417 54.545 20.05 5.22 42.25 4.79
2936 2949 4.683808 CCTAATAGGATGGATGCGTCCGA 61.684 52.174 20.05 14.76 42.25 4.55
2937 2950 6.459563 CCTAATAGGATGGATGCGTCCGAG 62.460 54.167 20.05 14.02 42.25 4.63
2946 2959 4.813296 GGATGCGTCCGAGATAAATTTT 57.187 40.909 9.75 0.00 34.13 1.82
2947 2960 5.169836 GGATGCGTCCGAGATAAATTTTT 57.830 39.130 9.75 0.00 34.13 1.94
2970 2983 9.973661 TTTTTAATAGGATGGATTTGTCTGAGA 57.026 29.630 0.00 0.00 0.00 3.27
2975 2988 6.821616 AGGATGGATTTGTCTGAGATTAGT 57.178 37.500 0.00 0.00 0.00 2.24
2976 2989 7.205515 AGGATGGATTTGTCTGAGATTAGTT 57.794 36.000 0.00 0.00 0.00 2.24
2977 2990 7.637511 AGGATGGATTTGTCTGAGATTAGTTT 58.362 34.615 0.00 0.00 0.00 2.66
2978 2991 7.772757 AGGATGGATTTGTCTGAGATTAGTTTC 59.227 37.037 0.00 0.00 0.00 2.78
2979 2992 7.012799 GGATGGATTTGTCTGAGATTAGTTTCC 59.987 40.741 0.00 0.00 0.00 3.13
2980 2993 7.020827 TGGATTTGTCTGAGATTAGTTTCCT 57.979 36.000 0.00 0.00 0.00 3.36
2981 2994 8.146053 TGGATTTGTCTGAGATTAGTTTCCTA 57.854 34.615 0.00 0.00 0.00 2.94
2982 2995 8.602424 TGGATTTGTCTGAGATTAGTTTCCTAA 58.398 33.333 0.00 0.00 37.56 2.69
2983 2996 8.884726 GGATTTGTCTGAGATTAGTTTCCTAAC 58.115 37.037 0.00 0.00 36.03 2.34
2984 2997 9.436957 GATTTGTCTGAGATTAGTTTCCTAACA 57.563 33.333 0.00 0.00 36.03 2.41
2985 2998 9.965902 ATTTGTCTGAGATTAGTTTCCTAACAT 57.034 29.630 0.00 0.00 36.03 2.71
2986 2999 8.777865 TTGTCTGAGATTAGTTTCCTAACATG 57.222 34.615 0.00 0.00 36.03 3.21
2987 3000 8.134202 TGTCTGAGATTAGTTTCCTAACATGA 57.866 34.615 0.00 0.00 36.03 3.07
2988 3001 8.762645 TGTCTGAGATTAGTTTCCTAACATGAT 58.237 33.333 0.00 0.00 36.03 2.45
2989 3002 9.039870 GTCTGAGATTAGTTTCCTAACATGATG 57.960 37.037 0.00 0.00 36.03 3.07
2990 3003 8.206867 TCTGAGATTAGTTTCCTAACATGATGG 58.793 37.037 0.00 0.00 36.03 3.51
2991 3004 8.089625 TGAGATTAGTTTCCTAACATGATGGA 57.910 34.615 0.00 0.47 36.03 3.41
2992 3005 8.717717 TGAGATTAGTTTCCTAACATGATGGAT 58.282 33.333 0.00 0.00 36.03 3.41
2993 3006 8.915057 AGATTAGTTTCCTAACATGATGGATG 57.085 34.615 0.00 0.00 36.03 3.51
2994 3007 6.942532 TTAGTTTCCTAACATGATGGATGC 57.057 37.500 0.00 0.60 36.70 3.91
2995 3008 4.858850 AGTTTCCTAACATGATGGATGCA 58.141 39.130 0.00 0.00 36.70 3.96
2996 3009 4.641989 AGTTTCCTAACATGATGGATGCAC 59.358 41.667 0.00 2.14 36.70 4.57
2997 3010 4.508551 TTCCTAACATGATGGATGCACT 57.491 40.909 0.00 0.00 35.15 4.40
2998 3011 4.077300 TCCTAACATGATGGATGCACTC 57.923 45.455 0.00 0.00 35.15 3.51
2999 3012 3.713248 TCCTAACATGATGGATGCACTCT 59.287 43.478 0.00 0.00 35.15 3.24
3000 3013 3.813724 CCTAACATGATGGATGCACTCTG 59.186 47.826 0.00 0.00 35.15 3.35
3001 3014 3.639672 AACATGATGGATGCACTCTGA 57.360 42.857 0.00 0.00 35.15 3.27
3002 3015 3.859061 ACATGATGGATGCACTCTGAT 57.141 42.857 0.00 0.00 35.15 2.90
3003 3016 4.166246 ACATGATGGATGCACTCTGATT 57.834 40.909 0.00 0.00 35.15 2.57
3004 3017 4.533815 ACATGATGGATGCACTCTGATTT 58.466 39.130 0.00 0.00 35.15 2.17
3005 3018 5.687780 ACATGATGGATGCACTCTGATTTA 58.312 37.500 0.00 0.00 35.15 1.40
3006 3019 5.763698 ACATGATGGATGCACTCTGATTTAG 59.236 40.000 0.00 0.00 35.15 1.85
3007 3020 5.363562 TGATGGATGCACTCTGATTTAGT 57.636 39.130 0.00 0.00 0.00 2.24
3008 3021 5.748402 TGATGGATGCACTCTGATTTAGTT 58.252 37.500 0.00 0.00 0.00 2.24
3009 3022 6.182627 TGATGGATGCACTCTGATTTAGTTT 58.817 36.000 0.00 0.00 0.00 2.66
3010 3023 6.660521 TGATGGATGCACTCTGATTTAGTTTT 59.339 34.615 0.00 0.00 0.00 2.43
3011 3024 6.500684 TGGATGCACTCTGATTTAGTTTTC 57.499 37.500 0.00 0.00 0.00 2.29
3012 3025 6.240894 TGGATGCACTCTGATTTAGTTTTCT 58.759 36.000 0.00 0.00 0.00 2.52
3013 3026 7.394016 TGGATGCACTCTGATTTAGTTTTCTA 58.606 34.615 0.00 0.00 0.00 2.10
3014 3027 7.550551 TGGATGCACTCTGATTTAGTTTTCTAG 59.449 37.037 0.00 0.00 33.61 2.43
3015 3028 7.766278 GGATGCACTCTGATTTAGTTTTCTAGA 59.234 37.037 0.00 0.00 33.61 2.43
3016 3029 9.155975 GATGCACTCTGATTTAGTTTTCTAGAA 57.844 33.333 0.00 0.00 33.61 2.10
3017 3030 9.678260 ATGCACTCTGATTTAGTTTTCTAGAAT 57.322 29.630 5.89 0.00 33.61 2.40
3027 3040 8.732746 TTTAGTTTTCTAGAATAGGATGCACC 57.267 34.615 5.89 0.00 39.78 5.01
3028 3041 5.685728 AGTTTTCTAGAATAGGATGCACCC 58.314 41.667 5.89 0.00 39.78 4.61
3029 3042 4.336889 TTTCTAGAATAGGATGCACCCG 57.663 45.455 5.89 0.00 39.78 5.28
3030 3043 2.958818 TCTAGAATAGGATGCACCCGT 58.041 47.619 0.00 0.00 39.78 5.28
3031 3044 2.628178 TCTAGAATAGGATGCACCCGTG 59.372 50.000 0.00 0.00 39.78 4.94
3032 3045 1.496060 AGAATAGGATGCACCCGTGA 58.504 50.000 0.00 0.00 40.05 4.35
3033 3046 2.050144 AGAATAGGATGCACCCGTGAT 58.950 47.619 0.00 0.00 40.05 3.06
3034 3047 2.439507 AGAATAGGATGCACCCGTGATT 59.560 45.455 0.00 0.00 40.05 2.57
3035 3048 3.646162 AGAATAGGATGCACCCGTGATTA 59.354 43.478 0.00 0.00 40.05 1.75
3036 3049 4.287067 AGAATAGGATGCACCCGTGATTAT 59.713 41.667 0.00 0.00 40.05 1.28
3037 3050 4.640771 ATAGGATGCACCCGTGATTATT 57.359 40.909 0.00 0.00 40.05 1.40
3038 3051 5.755409 ATAGGATGCACCCGTGATTATTA 57.245 39.130 0.00 0.00 40.05 0.98
3039 3052 4.008074 AGGATGCACCCGTGATTATTAG 57.992 45.455 0.00 0.00 40.05 1.73
3040 3053 3.391296 AGGATGCACCCGTGATTATTAGT 59.609 43.478 0.00 0.00 40.05 2.24
3041 3054 4.134563 GGATGCACCCGTGATTATTAGTT 58.865 43.478 0.00 0.00 0.00 2.24
3042 3055 4.578928 GGATGCACCCGTGATTATTAGTTT 59.421 41.667 0.00 0.00 0.00 2.66
3043 3056 5.277828 GGATGCACCCGTGATTATTAGTTTC 60.278 44.000 0.00 0.00 0.00 2.78
3044 3057 3.942748 TGCACCCGTGATTATTAGTTTCC 59.057 43.478 0.00 0.00 0.00 3.13
3045 3058 4.196971 GCACCCGTGATTATTAGTTTCCT 58.803 43.478 0.00 0.00 0.00 3.36
3046 3059 5.104859 TGCACCCGTGATTATTAGTTTCCTA 60.105 40.000 0.00 0.00 0.00 2.94
3047 3060 5.818857 GCACCCGTGATTATTAGTTTCCTAA 59.181 40.000 0.00 0.00 37.56 2.69
3048 3061 6.485648 GCACCCGTGATTATTAGTTTCCTAAT 59.514 38.462 0.00 0.00 44.29 1.73
3049 3062 7.012989 GCACCCGTGATTATTAGTTTCCTAATT 59.987 37.037 0.00 0.00 40.25 1.40
3050 3063 8.342634 CACCCGTGATTATTAGTTTCCTAATTG 58.657 37.037 0.73 0.00 40.25 2.32
3051 3064 7.012989 ACCCGTGATTATTAGTTTCCTAATTGC 59.987 37.037 0.73 0.00 40.25 3.56
3052 3065 7.228706 CCCGTGATTATTAGTTTCCTAATTGCT 59.771 37.037 0.73 0.00 40.25 3.91
3053 3066 8.283291 CCGTGATTATTAGTTTCCTAATTGCTC 58.717 37.037 0.73 0.00 40.25 4.26
3054 3067 8.826710 CGTGATTATTAGTTTCCTAATTGCTCA 58.173 33.333 0.73 0.82 40.25 4.26
3056 3069 9.342308 TGATTATTAGTTTCCTAATTGCTCAGG 57.658 33.333 0.73 0.00 40.25 3.86
3057 3070 7.568199 TTATTAGTTTCCTAATTGCTCAGGC 57.432 36.000 0.73 0.00 40.25 4.85
3058 3071 2.359900 AGTTTCCTAATTGCTCAGGCG 58.640 47.619 0.00 0.00 42.25 5.52
3059 3072 2.084546 GTTTCCTAATTGCTCAGGCGT 58.915 47.619 0.00 0.00 42.25 5.68
3060 3073 1.737838 TTCCTAATTGCTCAGGCGTG 58.262 50.000 0.00 0.00 42.25 5.34
3061 3074 0.107703 TCCTAATTGCTCAGGCGTGG 60.108 55.000 6.56 0.00 42.25 4.94
3062 3075 0.107703 CCTAATTGCTCAGGCGTGGA 60.108 55.000 6.56 0.00 42.25 4.02
3063 3076 1.293924 CTAATTGCTCAGGCGTGGAG 58.706 55.000 6.56 4.25 42.25 3.86
3064 3077 0.613260 TAATTGCTCAGGCGTGGAGT 59.387 50.000 6.56 0.00 42.25 3.85
3065 3078 0.250901 AATTGCTCAGGCGTGGAGTT 60.251 50.000 6.56 0.00 42.25 3.01
3066 3079 0.250901 ATTGCTCAGGCGTGGAGTTT 60.251 50.000 6.56 0.00 42.25 2.66
3067 3080 0.884704 TTGCTCAGGCGTGGAGTTTC 60.885 55.000 6.56 0.00 42.25 2.78
3068 3081 1.301716 GCTCAGGCGTGGAGTTTCA 60.302 57.895 6.56 0.00 34.83 2.69
3069 3082 0.674895 GCTCAGGCGTGGAGTTTCAT 60.675 55.000 6.56 0.00 34.83 2.57
3070 3083 1.405526 GCTCAGGCGTGGAGTTTCATA 60.406 52.381 6.56 0.00 34.83 2.15
3071 3084 2.743183 GCTCAGGCGTGGAGTTTCATAT 60.743 50.000 6.56 0.00 34.83 1.78
3072 3085 3.535561 CTCAGGCGTGGAGTTTCATATT 58.464 45.455 6.56 0.00 0.00 1.28
3073 3086 3.941483 CTCAGGCGTGGAGTTTCATATTT 59.059 43.478 6.56 0.00 0.00 1.40
3074 3087 4.331968 TCAGGCGTGGAGTTTCATATTTT 58.668 39.130 6.56 0.00 0.00 1.82
3075 3088 4.394920 TCAGGCGTGGAGTTTCATATTTTC 59.605 41.667 6.56 0.00 0.00 2.29
3076 3089 3.694566 AGGCGTGGAGTTTCATATTTTCC 59.305 43.478 0.00 0.00 0.00 3.13
3077 3090 3.694566 GGCGTGGAGTTTCATATTTTCCT 59.305 43.478 0.00 0.00 0.00 3.36
3078 3091 4.201920 GGCGTGGAGTTTCATATTTTCCTC 60.202 45.833 0.00 0.00 0.00 3.71
3079 3092 4.201920 GCGTGGAGTTTCATATTTTCCTCC 60.202 45.833 0.00 0.00 39.13 4.30
3080 3093 4.941263 CGTGGAGTTTCATATTTTCCTCCA 59.059 41.667 0.00 0.00 44.55 3.86
3082 3095 4.941263 TGGAGTTTCATATTTTCCTCCACG 59.059 41.667 0.00 0.00 42.54 4.94
3083 3096 4.335594 GGAGTTTCATATTTTCCTCCACGG 59.664 45.833 0.00 0.00 38.65 4.94
3084 3097 4.918588 AGTTTCATATTTTCCTCCACGGT 58.081 39.130 0.00 0.00 0.00 4.83
3085 3098 4.700213 AGTTTCATATTTTCCTCCACGGTG 59.300 41.667 0.00 0.00 0.00 4.94
3086 3099 3.275617 TCATATTTTCCTCCACGGTGG 57.724 47.619 21.27 21.27 39.43 4.61
3087 3100 2.841266 TCATATTTTCCTCCACGGTGGA 59.159 45.455 27.17 27.17 45.98 4.02
3094 3107 3.672293 TCCACGGTGGAGTACGAC 58.328 61.111 25.53 0.00 42.67 4.34
3095 3108 1.973281 TCCACGGTGGAGTACGACC 60.973 63.158 25.53 5.41 42.67 4.79
3096 3109 2.270257 CCACGGTGGAGTACGACCA 61.270 63.158 22.77 10.04 43.54 4.02
3097 3110 1.211969 CACGGTGGAGTACGACCAG 59.788 63.158 13.55 7.25 43.54 4.00
3098 3111 1.228367 ACGGTGGAGTACGACCAGT 60.228 57.895 13.55 7.77 43.54 4.00
3099 3112 1.239968 ACGGTGGAGTACGACCAGTC 61.240 60.000 13.55 9.15 43.54 3.51
3100 3113 1.239296 CGGTGGAGTACGACCAGTCA 61.239 60.000 13.55 0.00 43.54 3.41
3101 3114 0.963962 GGTGGAGTACGACCAGTCAA 59.036 55.000 13.55 0.00 43.01 3.18
3102 3115 1.549170 GGTGGAGTACGACCAGTCAAT 59.451 52.381 13.55 0.00 43.01 2.57
3103 3116 2.607187 GTGGAGTACGACCAGTCAATG 58.393 52.381 13.55 0.00 38.14 2.82
3104 3117 2.029290 GTGGAGTACGACCAGTCAATGT 60.029 50.000 13.55 0.00 38.14 2.71
3105 3118 3.192001 GTGGAGTACGACCAGTCAATGTA 59.808 47.826 13.55 0.00 38.14 2.29
3106 3119 3.827876 TGGAGTACGACCAGTCAATGTAA 59.172 43.478 10.04 0.00 33.22 2.41
3107 3120 4.281435 TGGAGTACGACCAGTCAATGTAAA 59.719 41.667 10.04 0.00 33.22 2.01
3108 3121 5.046878 TGGAGTACGACCAGTCAATGTAAAT 60.047 40.000 10.04 0.00 33.22 1.40
3109 3122 5.873164 GGAGTACGACCAGTCAATGTAAATT 59.127 40.000 7.16 0.00 0.00 1.82
3110 3123 7.037438 GGAGTACGACCAGTCAATGTAAATTA 58.963 38.462 7.16 0.00 0.00 1.40
3111 3124 7.009907 GGAGTACGACCAGTCAATGTAAATTAC 59.990 40.741 7.16 0.00 0.00 1.89
3112 3125 7.609056 AGTACGACCAGTCAATGTAAATTACT 58.391 34.615 4.67 0.00 0.00 2.24
3113 3126 8.742777 AGTACGACCAGTCAATGTAAATTACTA 58.257 33.333 4.67 0.00 0.00 1.82
3114 3127 9.357652 GTACGACCAGTCAATGTAAATTACTAA 57.642 33.333 4.67 0.00 0.00 2.24
3115 3128 8.475331 ACGACCAGTCAATGTAAATTACTAAG 57.525 34.615 4.67 0.00 0.00 2.18
3116 3129 8.092687 ACGACCAGTCAATGTAAATTACTAAGT 58.907 33.333 4.67 0.00 0.00 2.24
3117 3130 8.380644 CGACCAGTCAATGTAAATTACTAAGTG 58.619 37.037 4.67 0.00 0.00 3.16
3118 3131 8.040716 ACCAGTCAATGTAAATTACTAAGTGC 57.959 34.615 4.67 0.00 0.00 4.40
3119 3132 7.663905 ACCAGTCAATGTAAATTACTAAGTGCA 59.336 33.333 4.67 0.00 0.00 4.57
3120 3133 7.962918 CCAGTCAATGTAAATTACTAAGTGCAC 59.037 37.037 9.40 9.40 0.00 4.57
3121 3134 8.503196 CAGTCAATGTAAATTACTAAGTGCACA 58.497 33.333 21.04 0.00 0.00 4.57
3122 3135 8.504005 AGTCAATGTAAATTACTAAGTGCACAC 58.496 33.333 21.04 4.60 0.00 3.82
3123 3136 8.286800 GTCAATGTAAATTACTAAGTGCACACA 58.713 33.333 21.04 10.61 0.00 3.72
3124 3137 8.503196 TCAATGTAAATTACTAAGTGCACACAG 58.497 33.333 21.04 17.10 0.00 3.66
3125 3138 8.503196 CAATGTAAATTACTAAGTGCACACAGA 58.497 33.333 21.04 0.71 0.00 3.41
3126 3139 8.615878 ATGTAAATTACTAAGTGCACACAGAA 57.384 30.769 21.04 11.17 0.00 3.02
3127 3140 8.439993 TGTAAATTACTAAGTGCACACAGAAA 57.560 30.769 21.04 7.97 0.00 2.52
3128 3141 8.894731 TGTAAATTACTAAGTGCACACAGAAAA 58.105 29.630 21.04 14.10 0.00 2.29
3129 3142 9.893305 GTAAATTACTAAGTGCACACAGAAAAT 57.107 29.630 21.04 15.47 0.00 1.82
3132 3145 8.848474 ATTACTAAGTGCACACAGAAAATAGT 57.152 30.769 21.04 14.36 0.00 2.12
3133 3146 8.671384 TTACTAAGTGCACACAGAAAATAGTT 57.329 30.769 21.04 2.09 0.00 2.24
3134 3147 7.568199 ACTAAGTGCACACAGAAAATAGTTT 57.432 32.000 21.04 1.88 0.00 2.66
3135 3148 8.671384 ACTAAGTGCACACAGAAAATAGTTTA 57.329 30.769 21.04 3.04 0.00 2.01
3136 3149 8.774586 ACTAAGTGCACACAGAAAATAGTTTAG 58.225 33.333 21.04 14.46 0.00 1.85
3137 3150 6.560253 AGTGCACACAGAAAATAGTTTAGG 57.440 37.500 21.04 0.00 0.00 2.69
3138 3151 6.062095 AGTGCACACAGAAAATAGTTTAGGT 58.938 36.000 21.04 0.00 0.00 3.08
3139 3152 6.546034 AGTGCACACAGAAAATAGTTTAGGTT 59.454 34.615 21.04 0.00 0.00 3.50
3140 3153 7.717875 AGTGCACACAGAAAATAGTTTAGGTTA 59.282 33.333 21.04 0.00 0.00 2.85
3141 3154 8.347035 GTGCACACAGAAAATAGTTTAGGTTAA 58.653 33.333 13.17 0.00 0.00 2.01
3142 3155 8.564574 TGCACACAGAAAATAGTTTAGGTTAAG 58.435 33.333 0.00 0.00 0.00 1.85
3143 3156 8.021396 GCACACAGAAAATAGTTTAGGTTAAGG 58.979 37.037 0.00 0.00 0.00 2.69
3144 3157 8.021396 CACACAGAAAATAGTTTAGGTTAAGGC 58.979 37.037 0.00 0.00 0.00 4.35
3145 3158 7.942894 ACACAGAAAATAGTTTAGGTTAAGGCT 59.057 33.333 0.00 0.00 0.00 4.58
3146 3159 9.444600 CACAGAAAATAGTTTAGGTTAAGGCTA 57.555 33.333 0.00 0.00 0.00 3.93
3158 3171 5.729974 GGTTAAGGCTAACCGTTAGATTG 57.270 43.478 20.39 0.00 45.91 2.67
3159 3172 5.422145 GGTTAAGGCTAACCGTTAGATTGA 58.578 41.667 20.39 9.04 45.91 2.57
3160 3173 6.053650 GGTTAAGGCTAACCGTTAGATTGAT 58.946 40.000 20.39 5.45 45.91 2.57
3161 3174 6.541278 GGTTAAGGCTAACCGTTAGATTGATT 59.459 38.462 20.39 9.65 45.91 2.57
3162 3175 7.066645 GGTTAAGGCTAACCGTTAGATTGATTT 59.933 37.037 20.39 7.99 45.91 2.17
3163 3176 8.456471 GTTAAGGCTAACCGTTAGATTGATTTT 58.544 33.333 20.39 6.90 42.76 1.82
3164 3177 9.669887 TTAAGGCTAACCGTTAGATTGATTTTA 57.330 29.630 20.39 6.15 42.76 1.52
3165 3178 7.787725 AGGCTAACCGTTAGATTGATTTTAG 57.212 36.000 20.39 0.00 42.76 1.85
3166 3179 7.336396 AGGCTAACCGTTAGATTGATTTTAGT 58.664 34.615 20.39 0.00 42.76 2.24
3167 3180 7.280205 AGGCTAACCGTTAGATTGATTTTAGTG 59.720 37.037 20.39 0.00 42.76 2.74
3168 3181 7.407337 GCTAACCGTTAGATTGATTTTAGTGG 58.593 38.462 20.39 0.00 35.20 4.00
3169 3182 6.753107 AACCGTTAGATTGATTTTAGTGGG 57.247 37.500 0.00 0.00 0.00 4.61
3170 3183 4.638865 ACCGTTAGATTGATTTTAGTGGGC 59.361 41.667 0.00 0.00 0.00 5.36
3171 3184 4.036380 CCGTTAGATTGATTTTAGTGGGCC 59.964 45.833 0.00 0.00 0.00 5.80
3172 3185 4.881850 CGTTAGATTGATTTTAGTGGGCCT 59.118 41.667 4.53 0.00 0.00 5.19
3173 3186 6.053005 CGTTAGATTGATTTTAGTGGGCCTA 58.947 40.000 4.53 0.00 0.00 3.93
3174 3187 6.540914 CGTTAGATTGATTTTAGTGGGCCTAA 59.459 38.462 4.53 0.00 33.77 2.69
3175 3188 7.228706 CGTTAGATTGATTTTAGTGGGCCTAAT 59.771 37.037 4.53 0.00 35.59 1.73
3176 3189 8.568794 GTTAGATTGATTTTAGTGGGCCTAATC 58.431 37.037 4.53 6.97 35.59 1.75
3177 3190 5.765182 AGATTGATTTTAGTGGGCCTAATCG 59.235 40.000 4.53 0.00 35.59 3.34
3178 3191 4.497291 TGATTTTAGTGGGCCTAATCGT 57.503 40.909 4.53 0.00 35.59 3.73
3179 3192 4.196193 TGATTTTAGTGGGCCTAATCGTG 58.804 43.478 4.53 0.00 35.59 4.35
3180 3193 2.032680 TTTAGTGGGCCTAATCGTGC 57.967 50.000 4.53 0.00 35.59 5.34
3181 3194 0.179094 TTAGTGGGCCTAATCGTGCG 60.179 55.000 4.53 0.00 30.55 5.34
3182 3195 2.023414 TAGTGGGCCTAATCGTGCGG 62.023 60.000 4.53 0.00 0.00 5.69
3183 3196 3.395702 TGGGCCTAATCGTGCGGT 61.396 61.111 4.53 0.00 0.00 5.68
3184 3197 2.895372 GGGCCTAATCGTGCGGTG 60.895 66.667 0.84 0.00 0.00 4.94
3185 3198 2.895372 GGCCTAATCGTGCGGTGG 60.895 66.667 0.00 0.00 0.00 4.61
3186 3199 2.125269 GCCTAATCGTGCGGTGGT 60.125 61.111 0.00 0.00 0.00 4.16
3187 3200 1.142314 GCCTAATCGTGCGGTGGTA 59.858 57.895 0.00 0.00 0.00 3.25
3188 3201 0.249741 GCCTAATCGTGCGGTGGTAT 60.250 55.000 0.00 0.00 0.00 2.73
3189 3202 1.808891 GCCTAATCGTGCGGTGGTATT 60.809 52.381 0.00 0.00 0.00 1.89
3190 3203 1.864711 CCTAATCGTGCGGTGGTATTG 59.135 52.381 0.00 0.00 0.00 1.90
3191 3204 1.864711 CTAATCGTGCGGTGGTATTGG 59.135 52.381 0.00 0.00 0.00 3.16
3192 3205 0.250793 AATCGTGCGGTGGTATTGGA 59.749 50.000 0.00 0.00 0.00 3.53
3193 3206 0.468226 ATCGTGCGGTGGTATTGGAT 59.532 50.000 0.00 0.00 0.00 3.41
3194 3207 0.250793 TCGTGCGGTGGTATTGGATT 59.749 50.000 0.00 0.00 0.00 3.01
3195 3208 1.091537 CGTGCGGTGGTATTGGATTT 58.908 50.000 0.00 0.00 0.00 2.17
3196 3209 1.202132 CGTGCGGTGGTATTGGATTTG 60.202 52.381 0.00 0.00 0.00 2.32
3197 3210 1.816224 GTGCGGTGGTATTGGATTTGT 59.184 47.619 0.00 0.00 0.00 2.83
3198 3211 1.815613 TGCGGTGGTATTGGATTTGTG 59.184 47.619 0.00 0.00 0.00 3.33
3199 3212 1.816224 GCGGTGGTATTGGATTTGTGT 59.184 47.619 0.00 0.00 0.00 3.72
3200 3213 3.011119 GCGGTGGTATTGGATTTGTGTA 58.989 45.455 0.00 0.00 0.00 2.90
3201 3214 3.181504 GCGGTGGTATTGGATTTGTGTAC 60.182 47.826 0.00 0.00 0.00 2.90
3202 3215 3.062909 CGGTGGTATTGGATTTGTGTACG 59.937 47.826 0.00 0.00 0.00 3.67
3203 3216 3.181504 GGTGGTATTGGATTTGTGTACGC 60.182 47.826 0.00 0.00 0.00 4.42
3204 3217 3.687698 GTGGTATTGGATTTGTGTACGCT 59.312 43.478 8.10 0.00 0.00 5.07
3205 3218 4.155280 GTGGTATTGGATTTGTGTACGCTT 59.845 41.667 8.10 0.00 0.00 4.68
3206 3219 4.762765 TGGTATTGGATTTGTGTACGCTTT 59.237 37.500 8.10 0.00 0.00 3.51
3207 3220 5.092781 GGTATTGGATTTGTGTACGCTTTG 58.907 41.667 8.10 0.00 0.00 2.77
3208 3221 4.846779 ATTGGATTTGTGTACGCTTTGT 57.153 36.364 8.10 0.00 0.00 2.83
3209 3222 3.617540 TGGATTTGTGTACGCTTTGTG 57.382 42.857 8.10 0.00 0.00 3.33
3210 3223 2.292016 TGGATTTGTGTACGCTTTGTGG 59.708 45.455 8.10 0.00 0.00 4.17
3211 3224 2.351350 GGATTTGTGTACGCTTTGTGGG 60.351 50.000 8.10 0.00 0.00 4.61
3212 3225 1.025812 TTTGTGTACGCTTTGTGGGG 58.974 50.000 8.10 0.00 0.00 4.96
3213 3226 0.107116 TTGTGTACGCTTTGTGGGGT 60.107 50.000 8.10 0.00 36.39 4.95
3214 3227 0.816018 TGTGTACGCTTTGTGGGGTG 60.816 55.000 8.10 0.00 34.32 4.61
3215 3228 0.816421 GTGTACGCTTTGTGGGGTGT 60.816 55.000 0.00 0.00 34.32 4.16
3216 3229 0.816018 TGTACGCTTTGTGGGGTGTG 60.816 55.000 0.00 0.00 34.32 3.82
3217 3230 1.894756 TACGCTTTGTGGGGTGTGC 60.895 57.895 0.00 0.00 34.32 4.57
3218 3231 2.332312 TACGCTTTGTGGGGTGTGCT 62.332 55.000 0.00 0.00 34.32 4.40
3219 3232 2.489275 CGCTTTGTGGGGTGTGCTT 61.489 57.895 0.00 0.00 0.00 3.91
3220 3233 1.822615 GCTTTGTGGGGTGTGCTTT 59.177 52.632 0.00 0.00 0.00 3.51
3221 3234 1.036707 GCTTTGTGGGGTGTGCTTTA 58.963 50.000 0.00 0.00 0.00 1.85
3222 3235 1.410882 GCTTTGTGGGGTGTGCTTTAA 59.589 47.619 0.00 0.00 0.00 1.52
3223 3236 2.159028 GCTTTGTGGGGTGTGCTTTAAA 60.159 45.455 0.00 0.00 0.00 1.52
3224 3237 3.680196 GCTTTGTGGGGTGTGCTTTAAAA 60.680 43.478 0.00 0.00 0.00 1.52
3225 3238 4.508662 CTTTGTGGGGTGTGCTTTAAAAA 58.491 39.130 0.00 0.00 0.00 1.94
3226 3239 3.810310 TGTGGGGTGTGCTTTAAAAAG 57.190 42.857 0.00 0.00 39.03 2.27
3227 3240 3.100671 TGTGGGGTGTGCTTTAAAAAGT 58.899 40.909 4.50 0.00 38.28 2.66
3228 3241 3.515901 TGTGGGGTGTGCTTTAAAAAGTT 59.484 39.130 4.50 0.00 38.28 2.66
3229 3242 4.020128 TGTGGGGTGTGCTTTAAAAAGTTT 60.020 37.500 4.50 0.00 38.28 2.66
3230 3243 4.938832 GTGGGGTGTGCTTTAAAAAGTTTT 59.061 37.500 4.50 0.00 38.28 2.43
3231 3244 5.413213 GTGGGGTGTGCTTTAAAAAGTTTTT 59.587 36.000 17.26 17.26 38.28 1.94
3232 3245 6.594547 GTGGGGTGTGCTTTAAAAAGTTTTTA 59.405 34.615 15.29 15.29 38.28 1.52
3233 3246 7.281324 GTGGGGTGTGCTTTAAAAAGTTTTTAT 59.719 33.333 18.94 0.15 38.28 1.40
3234 3247 7.829706 TGGGGTGTGCTTTAAAAAGTTTTTATT 59.170 29.630 18.94 0.00 38.28 1.40
3235 3248 8.679100 GGGGTGTGCTTTAAAAAGTTTTTATTT 58.321 29.630 18.94 0.00 38.28 1.40
3236 3249 9.497030 GGGTGTGCTTTAAAAAGTTTTTATTTG 57.503 29.630 18.94 13.40 38.28 2.32
3405 3421 1.541310 TTACCTGGCGCACACTAGCT 61.541 55.000 10.83 0.00 0.00 3.32
3422 3438 3.214696 AGCTATCTTATTGGGCCACAC 57.785 47.619 5.23 0.00 0.00 3.82
3546 3565 8.961294 AAAATCATGAATTTCAGAAAACCACA 57.039 26.923 0.00 0.00 36.54 4.17
3610 3629 9.782028 CGAATTTGAAAACAGTTTGTGAATATG 57.218 29.630 0.00 0.00 0.00 1.78
3704 3723 6.296374 CCCTCAATCAAATTTAACCCACCATT 60.296 38.462 0.00 0.00 0.00 3.16
3711 3730 0.600557 TTAACCCACCATTGCTTGCG 59.399 50.000 0.00 0.00 0.00 4.85
3739 3758 4.500452 AGTTTCCCTTTGTACCCTAGTCT 58.500 43.478 0.00 0.00 0.00 3.24
3765 3784 0.546507 TAGGGAGTCACATGTGGGCA 60.547 55.000 25.16 3.63 0.00 5.36
3768 3787 0.537143 GGAGTCACATGTGGGCAACA 60.537 55.000 25.16 0.00 44.79 3.33
3783 3802 1.872237 GCAACACAAGCGTCCTACTCA 60.872 52.381 0.00 0.00 0.00 3.41
3835 3854 7.333779 TCATTACATGTCTCCCATTATCCAT 57.666 36.000 0.00 0.00 0.00 3.41
3891 3910 1.204704 ACTCGCATCGTCTCCATTTGA 59.795 47.619 0.00 0.00 0.00 2.69
3927 3949 8.960064 AGGAAAACCAATATCCTCAATACCTAT 58.040 33.333 0.00 0.00 39.36 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
240 245 6.055588 GGATCCAATGAAGAAACTAATCCGA 58.944 40.000 6.95 0.00 0.00 4.55
296 301 7.124298 TCTGTAAAGGTATGCAATCTCTACTGT 59.876 37.037 0.00 0.00 0.00 3.55
472 477 3.313274 AACTTTACACGCGTCACTTTG 57.687 42.857 9.86 0.00 0.00 2.77
566 571 4.756135 ACGTTGCTTTACCGGAAATTAAGA 59.244 37.500 9.46 0.00 0.00 2.10
574 579 2.609350 GTATGACGTTGCTTTACCGGA 58.391 47.619 9.46 0.00 0.00 5.14
576 581 2.688997 CGTATGACGTTGCTTTACCG 57.311 50.000 0.00 0.00 36.74 4.02
770 775 6.506538 ACAAAGTAGGATCAAGAGGCATAT 57.493 37.500 0.00 0.00 0.00 1.78
774 779 5.813157 GTCTTACAAAGTAGGATCAAGAGGC 59.187 44.000 0.00 0.00 0.00 4.70
819 824 9.891828 AAAATGTGTAATTATATATGGCACGTG 57.108 29.630 12.28 12.28 0.00 4.49
898 904 5.638596 AATAAGAATCGTGGGGTTTCAAC 57.361 39.130 0.00 0.00 0.00 3.18
981 987 1.373497 CCGCGTTGACTTCAGCTCT 60.373 57.895 4.92 0.00 0.00 4.09
1013 1019 3.473647 CCAGGGCATGCTCTCCGA 61.474 66.667 19.76 0.00 0.00 4.55
1533 1540 4.215613 GTGTCAACCCAACAGATACTTTCC 59.784 45.833 0.00 0.00 0.00 3.13
1830 1837 2.439156 GCTCCCACATGCTCCACC 60.439 66.667 0.00 0.00 0.00 4.61
2072 2079 2.869801 CGATGGCCGAAATAGCACTTTA 59.130 45.455 0.00 0.00 41.76 1.85
2073 2080 1.670811 CGATGGCCGAAATAGCACTTT 59.329 47.619 0.00 0.00 41.76 2.66
2180 2187 2.124151 CCCTACAGCCCATGTGCC 60.124 66.667 0.00 0.00 43.80 5.01
2181 2188 2.124151 CCCCTACAGCCCATGTGC 60.124 66.667 0.00 0.00 43.80 4.57
2331 2339 2.731339 AGATCCAATCTCCTAGGGGG 57.269 55.000 9.36 2.39 33.42 5.40
2419 2429 1.201429 GGAGAGGGAGGTGCCAAAGA 61.201 60.000 0.00 0.00 38.95 2.52
2427 2437 0.042881 GTAACAGGGGAGAGGGAGGT 59.957 60.000 0.00 0.00 0.00 3.85
2448 2458 5.184479 GCCTATACTACGAGAGAGAGAGAGA 59.816 48.000 0.00 0.00 0.00 3.10
2449 2459 5.408356 GCCTATACTACGAGAGAGAGAGAG 58.592 50.000 0.00 0.00 0.00 3.20
2450 2460 4.082625 CGCCTATACTACGAGAGAGAGAGA 60.083 50.000 0.00 0.00 0.00 3.10
2451 2461 4.082625 TCGCCTATACTACGAGAGAGAGAG 60.083 50.000 0.00 0.00 0.00 3.20
2763 2773 5.163499 ACAAAAATTTTCCTACGGCTTCACA 60.163 36.000 3.41 0.00 0.00 3.58
2815 2828 3.308878 GAACACACGTGCCATCGCC 62.309 63.158 17.22 0.00 0.00 5.54
2816 2829 2.173382 GAACACACGTGCCATCGC 59.827 61.111 17.22 0.00 0.00 4.58
2817 2830 2.677003 GGGAACACACGTGCCATCG 61.677 63.158 17.22 1.56 43.81 3.84
2818 2831 2.677003 CGGGAACACACGTGCCATC 61.677 63.158 17.22 10.86 43.81 3.51
2819 2832 2.668185 TTCGGGAACACACGTGCCAT 62.668 55.000 17.22 0.55 43.81 4.40
2820 2833 3.387225 TTCGGGAACACACGTGCCA 62.387 57.895 17.22 0.00 43.81 4.92
2821 2834 2.589442 TTCGGGAACACACGTGCC 60.589 61.111 17.22 8.54 40.73 5.01
2822 2835 2.604174 CCTTCGGGAACACACGTGC 61.604 63.158 17.22 0.00 37.25 5.34
2823 2836 1.068417 TCCTTCGGGAACACACGTG 59.932 57.895 15.48 15.48 41.89 4.49
2824 2837 3.541072 TCCTTCGGGAACACACGT 58.459 55.556 0.00 0.00 41.89 4.49
2832 2845 0.898789 AGCTTCGTCTTCCTTCGGGA 60.899 55.000 0.00 0.00 43.37 5.14
2833 2846 0.458716 GAGCTTCGTCTTCCTTCGGG 60.459 60.000 0.00 0.00 0.00 5.14
2834 2847 0.458716 GGAGCTTCGTCTTCCTTCGG 60.459 60.000 0.00 0.00 0.00 4.30
2835 2848 0.528470 AGGAGCTTCGTCTTCCTTCG 59.472 55.000 0.00 0.00 0.00 3.79
2836 2849 2.342179 CAAGGAGCTTCGTCTTCCTTC 58.658 52.381 2.17 0.00 38.60 3.46
2837 2850 1.609320 GCAAGGAGCTTCGTCTTCCTT 60.609 52.381 0.00 0.00 41.02 3.36
2838 2851 0.036858 GCAAGGAGCTTCGTCTTCCT 60.037 55.000 0.00 0.00 41.15 3.36
2839 2852 1.355066 CGCAAGGAGCTTCGTCTTCC 61.355 60.000 0.00 0.00 42.61 3.46
2840 2853 1.960994 GCGCAAGGAGCTTCGTCTTC 61.961 60.000 0.30 0.00 42.61 2.87
2841 2854 2.029844 GCGCAAGGAGCTTCGTCTT 61.030 57.895 0.30 0.00 42.61 3.01
2842 2855 2.433318 GCGCAAGGAGCTTCGTCT 60.433 61.111 0.30 0.00 42.61 4.18
2843 2856 2.433318 AGCGCAAGGAGCTTCGTC 60.433 61.111 11.47 0.00 43.24 4.20
2850 2863 3.350031 ATGGGGGAAGCGCAAGGAG 62.350 63.158 11.47 0.00 38.28 3.69
2851 2864 3.338250 ATGGGGGAAGCGCAAGGA 61.338 61.111 11.47 0.00 38.28 3.36
2852 2865 2.830370 GATGGGGGAAGCGCAAGG 60.830 66.667 11.47 0.00 38.28 3.61
2853 2866 3.204827 CGATGGGGGAAGCGCAAG 61.205 66.667 11.47 0.00 43.44 4.01
2854 2867 4.028490 ACGATGGGGGAAGCGCAA 62.028 61.111 11.47 0.00 0.00 4.85
2855 2868 4.776322 CACGATGGGGGAAGCGCA 62.776 66.667 11.47 0.00 0.00 6.09
2858 2871 2.666596 CTAGCCACGATGGGGGAAGC 62.667 65.000 0.00 0.00 38.19 3.86
2859 2872 1.447643 CTAGCCACGATGGGGGAAG 59.552 63.158 0.00 0.00 38.19 3.46
2860 2873 2.742116 GCTAGCCACGATGGGGGAA 61.742 63.158 2.29 0.00 38.19 3.97
2861 2874 3.161450 GCTAGCCACGATGGGGGA 61.161 66.667 2.29 0.00 38.19 4.81
2862 2875 4.609018 CGCTAGCCACGATGGGGG 62.609 72.222 9.66 0.00 38.19 5.40
2863 2876 3.849951 ACGCTAGCCACGATGGGG 61.850 66.667 9.66 0.00 38.19 4.96
2864 2877 2.586079 CACGCTAGCCACGATGGG 60.586 66.667 9.66 0.00 38.19 4.00
2865 2878 3.264897 GCACGCTAGCCACGATGG 61.265 66.667 9.66 0.00 41.55 3.51
2866 2879 1.884464 ATGCACGCTAGCCACGATG 60.884 57.895 9.66 1.30 0.00 3.84
2867 2880 1.884464 CATGCACGCTAGCCACGAT 60.884 57.895 9.66 0.00 0.00 3.73
2868 2881 2.296814 ATCATGCACGCTAGCCACGA 62.297 55.000 9.66 0.00 0.00 4.35
2869 2882 1.884464 ATCATGCACGCTAGCCACG 60.884 57.895 9.66 0.00 0.00 4.94
2870 2883 1.645455 CATCATGCACGCTAGCCAC 59.355 57.895 9.66 0.00 0.00 5.01
2871 2884 1.524393 CCATCATGCACGCTAGCCA 60.524 57.895 9.66 1.33 0.00 4.75
2872 2885 2.901292 GCCATCATGCACGCTAGCC 61.901 63.158 9.66 0.00 0.00 3.93
2873 2886 2.635899 GCCATCATGCACGCTAGC 59.364 61.111 4.06 4.06 0.00 3.42
2874 2887 2.601398 CCGCCATCATGCACGCTAG 61.601 63.158 0.00 0.00 0.00 3.42
2875 2888 2.588596 CCGCCATCATGCACGCTA 60.589 61.111 0.00 0.00 0.00 4.26
2878 2891 4.246206 CTGCCGCCATCATGCACG 62.246 66.667 0.00 0.00 0.00 5.34
2879 2892 3.896133 CCTGCCGCCATCATGCAC 61.896 66.667 0.00 0.00 0.00 4.57
2897 2910 2.303676 GGAAGCTAATCGCGAGCCG 61.304 63.158 16.66 5.93 45.59 5.52
2898 2911 0.314302 TAGGAAGCTAATCGCGAGCC 59.686 55.000 16.66 6.95 45.59 4.70
2899 2912 2.135664 TTAGGAAGCTAATCGCGAGC 57.864 50.000 16.66 13.26 45.59 5.03
2900 2913 4.156190 TCCTATTAGGAAGCTAATCGCGAG 59.844 45.833 16.66 1.42 42.51 5.03
2901 2914 4.077108 TCCTATTAGGAAGCTAATCGCGA 58.923 43.478 13.09 13.09 42.51 5.87
2902 2915 4.436242 TCCTATTAGGAAGCTAATCGCG 57.564 45.455 10.10 0.00 42.51 5.87
2911 2924 4.621747 GGACGCATCCATCCTATTAGGAAG 60.622 50.000 16.28 11.82 42.59 3.46
2912 2925 3.260884 GGACGCATCCATCCTATTAGGAA 59.739 47.826 16.28 0.83 42.59 3.36
2913 2926 2.832129 GGACGCATCCATCCTATTAGGA 59.168 50.000 14.77 14.77 45.47 2.94
2914 2927 2.417379 CGGACGCATCCATCCTATTAGG 60.417 54.545 0.00 3.07 46.67 2.69
2915 2928 2.492088 TCGGACGCATCCATCCTATTAG 59.508 50.000 0.00 0.00 46.67 1.73
2916 2929 2.492088 CTCGGACGCATCCATCCTATTA 59.508 50.000 0.00 0.00 46.67 0.98
2917 2930 1.273606 CTCGGACGCATCCATCCTATT 59.726 52.381 0.00 0.00 46.67 1.73
2918 2931 0.891373 CTCGGACGCATCCATCCTAT 59.109 55.000 0.00 0.00 46.67 2.57
2919 2932 0.179001 TCTCGGACGCATCCATCCTA 60.179 55.000 0.00 0.00 46.67 2.94
2920 2933 0.829602 ATCTCGGACGCATCCATCCT 60.830 55.000 0.00 0.00 46.67 3.24
2921 2934 0.888619 TATCTCGGACGCATCCATCC 59.111 55.000 0.00 0.00 46.67 3.51
2922 2935 2.724977 TTATCTCGGACGCATCCATC 57.275 50.000 0.00 0.00 46.67 3.51
2923 2936 3.685139 ATTTATCTCGGACGCATCCAT 57.315 42.857 0.00 0.00 46.67 3.41
2924 2937 3.469008 AATTTATCTCGGACGCATCCA 57.531 42.857 0.00 0.00 46.67 3.41
2925 2938 4.813296 AAAATTTATCTCGGACGCATCC 57.187 40.909 0.00 0.00 42.28 3.51
2944 2957 9.973661 TCTCAGACAAATCCATCCTATTAAAAA 57.026 29.630 0.00 0.00 0.00 1.94
2949 2962 8.943085 ACTAATCTCAGACAAATCCATCCTATT 58.057 33.333 0.00 0.00 0.00 1.73
2950 2963 8.503428 ACTAATCTCAGACAAATCCATCCTAT 57.497 34.615 0.00 0.00 0.00 2.57
2951 2964 7.921041 ACTAATCTCAGACAAATCCATCCTA 57.079 36.000 0.00 0.00 0.00 2.94
2952 2965 6.821616 ACTAATCTCAGACAAATCCATCCT 57.178 37.500 0.00 0.00 0.00 3.24
2953 2966 7.012799 GGAAACTAATCTCAGACAAATCCATCC 59.987 40.741 0.00 0.00 0.00 3.51
2954 2967 7.772757 AGGAAACTAATCTCAGACAAATCCATC 59.227 37.037 0.00 0.00 40.61 3.51
2955 2968 7.637511 AGGAAACTAATCTCAGACAAATCCAT 58.362 34.615 0.00 0.00 40.61 3.41
2956 2969 7.020827 AGGAAACTAATCTCAGACAAATCCA 57.979 36.000 0.00 0.00 40.61 3.41
2971 2984 6.318648 GTGCATCCATCATGTTAGGAAACTAA 59.681 38.462 7.43 0.00 43.58 2.24
2972 2985 5.822519 GTGCATCCATCATGTTAGGAAACTA 59.177 40.000 7.43 0.00 37.00 2.24
2973 2986 4.641989 GTGCATCCATCATGTTAGGAAACT 59.358 41.667 7.43 0.00 38.59 2.66
2974 2987 4.641989 AGTGCATCCATCATGTTAGGAAAC 59.358 41.667 7.43 6.94 34.62 2.78
2975 2988 4.858850 AGTGCATCCATCATGTTAGGAAA 58.141 39.130 7.43 0.00 34.62 3.13
2976 2989 4.164796 AGAGTGCATCCATCATGTTAGGAA 59.835 41.667 7.43 0.00 34.62 3.36
2977 2990 3.713248 AGAGTGCATCCATCATGTTAGGA 59.287 43.478 0.00 6.11 34.56 2.94
2978 2991 3.813724 CAGAGTGCATCCATCATGTTAGG 59.186 47.826 0.00 0.00 34.56 2.69
2979 2992 4.700700 TCAGAGTGCATCCATCATGTTAG 58.299 43.478 0.00 0.00 34.56 2.34
2980 2993 4.758773 TCAGAGTGCATCCATCATGTTA 57.241 40.909 0.00 0.00 34.56 2.41
2981 2994 3.639672 TCAGAGTGCATCCATCATGTT 57.360 42.857 0.00 0.00 34.56 2.71
2982 2995 3.859061 ATCAGAGTGCATCCATCATGT 57.141 42.857 0.00 0.00 34.56 3.21
2983 2996 5.763698 ACTAAATCAGAGTGCATCCATCATG 59.236 40.000 0.00 0.00 35.29 3.07
2984 2997 5.938279 ACTAAATCAGAGTGCATCCATCAT 58.062 37.500 0.00 0.00 0.00 2.45
2985 2998 5.363562 ACTAAATCAGAGTGCATCCATCA 57.636 39.130 0.00 0.00 0.00 3.07
2986 2999 6.690194 AAACTAAATCAGAGTGCATCCATC 57.310 37.500 0.00 0.00 0.00 3.51
2987 3000 6.888632 AGAAAACTAAATCAGAGTGCATCCAT 59.111 34.615 0.00 0.00 0.00 3.41
2988 3001 6.240894 AGAAAACTAAATCAGAGTGCATCCA 58.759 36.000 0.00 0.00 0.00 3.41
2989 3002 6.749923 AGAAAACTAAATCAGAGTGCATCC 57.250 37.500 0.00 0.00 0.00 3.51
2990 3003 8.709386 TCTAGAAAACTAAATCAGAGTGCATC 57.291 34.615 0.00 0.00 0.00 3.91
2991 3004 9.678260 ATTCTAGAAAACTAAATCAGAGTGCAT 57.322 29.630 9.71 0.00 0.00 3.96
3001 3014 9.343539 GGTGCATCCTATTCTAGAAAACTAAAT 57.656 33.333 9.71 0.00 0.00 1.40
3002 3015 7.773690 GGGTGCATCCTATTCTAGAAAACTAAA 59.226 37.037 9.39 0.00 36.25 1.85
3003 3016 7.280356 GGGTGCATCCTATTCTAGAAAACTAA 58.720 38.462 9.39 0.00 36.25 2.24
3004 3017 6.462487 CGGGTGCATCCTATTCTAGAAAACTA 60.462 42.308 15.59 0.00 36.25 2.24
3005 3018 5.685075 CGGGTGCATCCTATTCTAGAAAACT 60.685 44.000 15.59 0.00 36.25 2.66
3006 3019 4.511826 CGGGTGCATCCTATTCTAGAAAAC 59.488 45.833 15.59 0.00 36.25 2.43
3007 3020 4.163458 ACGGGTGCATCCTATTCTAGAAAA 59.837 41.667 15.59 0.00 36.25 2.29
3008 3021 3.709653 ACGGGTGCATCCTATTCTAGAAA 59.290 43.478 15.59 0.00 36.25 2.52
3009 3022 3.069586 CACGGGTGCATCCTATTCTAGAA 59.930 47.826 15.59 7.82 36.25 2.10
3010 3023 2.628178 CACGGGTGCATCCTATTCTAGA 59.372 50.000 15.59 0.00 36.25 2.43
3011 3024 2.628178 TCACGGGTGCATCCTATTCTAG 59.372 50.000 15.59 0.00 36.25 2.43
3012 3025 2.673258 TCACGGGTGCATCCTATTCTA 58.327 47.619 15.59 0.00 36.25 2.10
3013 3026 1.496060 TCACGGGTGCATCCTATTCT 58.504 50.000 15.59 0.00 36.25 2.40
3014 3027 2.550830 ATCACGGGTGCATCCTATTC 57.449 50.000 15.59 0.00 36.25 1.75
3015 3028 4.640771 ATAATCACGGGTGCATCCTATT 57.359 40.909 15.59 13.04 36.25 1.73
3016 3029 4.640771 AATAATCACGGGTGCATCCTAT 57.359 40.909 15.59 1.29 36.25 2.57
3017 3030 4.591498 ACTAATAATCACGGGTGCATCCTA 59.409 41.667 15.59 0.00 36.25 2.94
3018 3031 3.391296 ACTAATAATCACGGGTGCATCCT 59.609 43.478 15.59 0.00 36.25 3.24
3019 3032 3.740115 ACTAATAATCACGGGTGCATCC 58.260 45.455 5.70 5.70 0.00 3.51
3020 3033 5.277828 GGAAACTAATAATCACGGGTGCATC 60.278 44.000 0.00 0.00 0.00 3.91
3021 3034 4.578928 GGAAACTAATAATCACGGGTGCAT 59.421 41.667 0.00 0.00 0.00 3.96
3022 3035 3.942748 GGAAACTAATAATCACGGGTGCA 59.057 43.478 0.00 0.00 0.00 4.57
3023 3036 4.196971 AGGAAACTAATAATCACGGGTGC 58.803 43.478 0.00 0.00 40.61 5.01
3037 3050 3.055385 ACGCCTGAGCAATTAGGAAACTA 60.055 43.478 0.00 0.00 39.95 2.24
3038 3051 2.290323 ACGCCTGAGCAATTAGGAAACT 60.290 45.455 0.00 0.00 41.92 2.66
3039 3052 2.084546 ACGCCTGAGCAATTAGGAAAC 58.915 47.619 0.00 0.00 39.83 2.78
3040 3053 2.083774 CACGCCTGAGCAATTAGGAAA 58.916 47.619 0.00 0.00 39.83 3.13
3041 3054 1.678728 CCACGCCTGAGCAATTAGGAA 60.679 52.381 0.00 0.00 39.83 3.36
3042 3055 0.107703 CCACGCCTGAGCAATTAGGA 60.108 55.000 0.00 0.00 39.83 2.94
3043 3056 0.107703 TCCACGCCTGAGCAATTAGG 60.108 55.000 0.00 0.00 39.83 2.69
3044 3057 1.293924 CTCCACGCCTGAGCAATTAG 58.706 55.000 0.00 0.00 39.83 1.73
3045 3058 0.613260 ACTCCACGCCTGAGCAATTA 59.387 50.000 0.00 0.00 39.83 1.40
3046 3059 0.250901 AACTCCACGCCTGAGCAATT 60.251 50.000 0.00 0.00 39.83 2.32
3047 3060 0.250901 AAACTCCACGCCTGAGCAAT 60.251 50.000 0.00 0.00 39.83 3.56
3048 3061 0.884704 GAAACTCCACGCCTGAGCAA 60.885 55.000 0.00 0.00 39.83 3.91
3049 3062 1.301716 GAAACTCCACGCCTGAGCA 60.302 57.895 0.00 0.00 39.83 4.26
3050 3063 0.674895 ATGAAACTCCACGCCTGAGC 60.675 55.000 0.00 0.00 32.98 4.26
3051 3064 2.672961 TATGAAACTCCACGCCTGAG 57.327 50.000 0.00 0.00 35.92 3.35
3052 3065 3.627395 AATATGAAACTCCACGCCTGA 57.373 42.857 0.00 0.00 0.00 3.86
3053 3066 4.438744 GGAAAATATGAAACTCCACGCCTG 60.439 45.833 0.00 0.00 0.00 4.85
3054 3067 3.694566 GGAAAATATGAAACTCCACGCCT 59.305 43.478 0.00 0.00 0.00 5.52
3055 3068 3.694566 AGGAAAATATGAAACTCCACGCC 59.305 43.478 0.00 0.00 0.00 5.68
3056 3069 4.201920 GGAGGAAAATATGAAACTCCACGC 60.202 45.833 0.00 0.00 43.02 5.34
3057 3070 4.941263 TGGAGGAAAATATGAAACTCCACG 59.059 41.667 12.77 0.00 46.79 4.94
3060 3073 4.335594 CCGTGGAGGAAAATATGAAACTCC 59.664 45.833 0.00 0.00 45.00 3.85
3061 3074 4.941873 ACCGTGGAGGAAAATATGAAACTC 59.058 41.667 0.00 0.00 45.00 3.01
3062 3075 4.700213 CACCGTGGAGGAAAATATGAAACT 59.300 41.667 0.00 0.00 45.00 2.66
3063 3076 4.142469 CCACCGTGGAGGAAAATATGAAAC 60.142 45.833 12.68 0.00 45.00 2.78
3064 3077 4.013728 CCACCGTGGAGGAAAATATGAAA 58.986 43.478 12.68 0.00 45.00 2.69
3065 3078 3.264706 TCCACCGTGGAGGAAAATATGAA 59.735 43.478 16.73 0.00 42.67 2.57
3066 3079 2.841266 TCCACCGTGGAGGAAAATATGA 59.159 45.455 16.73 0.00 42.67 2.15
3067 3080 3.275617 TCCACCGTGGAGGAAAATATG 57.724 47.619 16.73 0.00 42.67 1.78
3077 3090 1.973281 GGTCGTACTCCACCGTGGA 60.973 63.158 19.39 19.39 45.98 4.02
3078 3091 2.209064 CTGGTCGTACTCCACCGTGG 62.209 65.000 11.73 11.73 39.43 4.94
3079 3092 1.211969 CTGGTCGTACTCCACCGTG 59.788 63.158 3.09 0.00 35.15 4.94
3080 3093 1.228367 ACTGGTCGTACTCCACCGT 60.228 57.895 3.09 0.00 35.15 4.83
3081 3094 1.239296 TGACTGGTCGTACTCCACCG 61.239 60.000 3.09 0.00 35.15 4.94
3082 3095 0.963962 TTGACTGGTCGTACTCCACC 59.036 55.000 3.09 1.40 0.00 4.61
3083 3096 2.029290 ACATTGACTGGTCGTACTCCAC 60.029 50.000 3.09 0.00 0.00 4.02
3084 3097 2.244695 ACATTGACTGGTCGTACTCCA 58.755 47.619 6.51 6.51 0.00 3.86
3085 3098 4.445452 TTACATTGACTGGTCGTACTCC 57.555 45.455 0.00 0.00 0.00 3.85
3086 3099 6.963049 AATTTACATTGACTGGTCGTACTC 57.037 37.500 0.00 0.00 0.00 2.59
3087 3100 7.609056 AGTAATTTACATTGACTGGTCGTACT 58.391 34.615 9.15 0.00 0.00 2.73
3088 3101 7.823149 AGTAATTTACATTGACTGGTCGTAC 57.177 36.000 9.15 0.00 0.00 3.67
3089 3102 9.577110 CTTAGTAATTTACATTGACTGGTCGTA 57.423 33.333 9.15 0.00 0.00 3.43
3090 3103 8.092687 ACTTAGTAATTTACATTGACTGGTCGT 58.907 33.333 9.15 0.00 0.00 4.34
3091 3104 8.380644 CACTTAGTAATTTACATTGACTGGTCG 58.619 37.037 9.15 0.00 0.00 4.79
3092 3105 8.175716 GCACTTAGTAATTTACATTGACTGGTC 58.824 37.037 9.15 0.00 0.00 4.02
3093 3106 7.663905 TGCACTTAGTAATTTACATTGACTGGT 59.336 33.333 9.15 0.00 0.00 4.00
3094 3107 7.962918 GTGCACTTAGTAATTTACATTGACTGG 59.037 37.037 10.32 0.00 0.00 4.00
3095 3108 8.503196 TGTGCACTTAGTAATTTACATTGACTG 58.497 33.333 19.41 0.00 0.00 3.51
3096 3109 8.504005 GTGTGCACTTAGTAATTTACATTGACT 58.496 33.333 19.41 0.00 0.00 3.41
3097 3110 8.286800 TGTGTGCACTTAGTAATTTACATTGAC 58.713 33.333 19.41 1.34 0.00 3.18
3098 3111 8.384607 TGTGTGCACTTAGTAATTTACATTGA 57.615 30.769 19.41 0.00 0.00 2.57
3099 3112 8.503196 TCTGTGTGCACTTAGTAATTTACATTG 58.497 33.333 19.41 0.00 0.00 2.82
3100 3113 8.615878 TCTGTGTGCACTTAGTAATTTACATT 57.384 30.769 19.41 0.00 0.00 2.71
3101 3114 8.615878 TTCTGTGTGCACTTAGTAATTTACAT 57.384 30.769 19.41 0.00 0.00 2.29
3102 3115 8.439993 TTTCTGTGTGCACTTAGTAATTTACA 57.560 30.769 19.41 8.66 0.00 2.41
3103 3116 9.893305 ATTTTCTGTGTGCACTTAGTAATTTAC 57.107 29.630 19.41 4.01 0.00 2.01
3106 3119 9.284968 ACTATTTTCTGTGTGCACTTAGTAATT 57.715 29.630 19.41 13.31 0.00 1.40
3107 3120 8.848474 ACTATTTTCTGTGTGCACTTAGTAAT 57.152 30.769 19.41 18.26 0.00 1.89
3108 3121 8.671384 AACTATTTTCTGTGTGCACTTAGTAA 57.329 30.769 19.41 12.61 0.00 2.24
3109 3122 8.671384 AAACTATTTTCTGTGTGCACTTAGTA 57.329 30.769 19.41 7.23 0.00 1.82
3110 3123 7.568199 AAACTATTTTCTGTGTGCACTTAGT 57.432 32.000 19.41 8.87 0.00 2.24
3111 3124 8.230486 CCTAAACTATTTTCTGTGTGCACTTAG 58.770 37.037 19.41 15.55 0.00 2.18
3112 3125 7.717875 ACCTAAACTATTTTCTGTGTGCACTTA 59.282 33.333 19.41 5.91 0.00 2.24
3113 3126 6.546034 ACCTAAACTATTTTCTGTGTGCACTT 59.454 34.615 19.41 1.31 0.00 3.16
3114 3127 6.062095 ACCTAAACTATTTTCTGTGTGCACT 58.938 36.000 19.41 0.00 0.00 4.40
3115 3128 6.313744 ACCTAAACTATTTTCTGTGTGCAC 57.686 37.500 10.75 10.75 0.00 4.57
3116 3129 6.952773 AACCTAAACTATTTTCTGTGTGCA 57.047 33.333 0.00 0.00 0.00 4.57
3117 3130 8.021396 CCTTAACCTAAACTATTTTCTGTGTGC 58.979 37.037 0.00 0.00 0.00 4.57
3118 3131 8.021396 GCCTTAACCTAAACTATTTTCTGTGTG 58.979 37.037 0.00 0.00 0.00 3.82
3119 3132 7.942894 AGCCTTAACCTAAACTATTTTCTGTGT 59.057 33.333 0.00 0.00 0.00 3.72
3120 3133 8.336801 AGCCTTAACCTAAACTATTTTCTGTG 57.663 34.615 0.00 0.00 0.00 3.66
3137 3150 7.549615 AATCAATCTAACGGTTAGCCTTAAC 57.450 36.000 20.49 0.00 38.74 2.01
3138 3151 8.570068 AAAATCAATCTAACGGTTAGCCTTAA 57.430 30.769 20.49 5.96 33.23 1.85
3139 3152 9.321562 CTAAAATCAATCTAACGGTTAGCCTTA 57.678 33.333 20.49 6.30 33.23 2.69
3140 3153 7.827729 ACTAAAATCAATCTAACGGTTAGCCTT 59.172 33.333 20.49 13.97 33.23 4.35
3141 3154 7.280205 CACTAAAATCAATCTAACGGTTAGCCT 59.720 37.037 20.49 9.37 33.23 4.58
3142 3155 7.407337 CACTAAAATCAATCTAACGGTTAGCC 58.593 38.462 20.49 0.00 33.23 3.93
3143 3156 7.407337 CCACTAAAATCAATCTAACGGTTAGC 58.593 38.462 20.49 0.00 33.23 3.09
3144 3157 7.466860 GCCCACTAAAATCAATCTAACGGTTAG 60.467 40.741 19.49 19.49 34.52 2.34
3145 3158 6.316890 GCCCACTAAAATCAATCTAACGGTTA 59.683 38.462 0.00 0.00 0.00 2.85
3146 3159 5.124936 GCCCACTAAAATCAATCTAACGGTT 59.875 40.000 0.00 0.00 0.00 4.44
3147 3160 4.638865 GCCCACTAAAATCAATCTAACGGT 59.361 41.667 0.00 0.00 0.00 4.83
3148 3161 4.036380 GGCCCACTAAAATCAATCTAACGG 59.964 45.833 0.00 0.00 0.00 4.44
3149 3162 4.881850 AGGCCCACTAAAATCAATCTAACG 59.118 41.667 0.00 0.00 0.00 3.18
3150 3163 7.875327 TTAGGCCCACTAAAATCAATCTAAC 57.125 36.000 0.00 0.00 38.68 2.34
3151 3164 7.444183 CGATTAGGCCCACTAAAATCAATCTAA 59.556 37.037 0.00 0.00 44.39 2.10
3152 3165 6.934645 CGATTAGGCCCACTAAAATCAATCTA 59.065 38.462 0.00 0.00 44.39 1.98
3153 3166 5.765182 CGATTAGGCCCACTAAAATCAATCT 59.235 40.000 0.00 0.00 44.39 2.40
3154 3167 5.531287 ACGATTAGGCCCACTAAAATCAATC 59.469 40.000 0.00 0.00 44.39 2.67
3155 3168 5.299279 CACGATTAGGCCCACTAAAATCAAT 59.701 40.000 0.00 0.00 44.39 2.57
3156 3169 4.638421 CACGATTAGGCCCACTAAAATCAA 59.362 41.667 0.00 0.00 44.39 2.57
3157 3170 4.196193 CACGATTAGGCCCACTAAAATCA 58.804 43.478 0.00 0.00 44.39 2.57
3158 3171 3.003378 GCACGATTAGGCCCACTAAAATC 59.997 47.826 0.00 0.00 44.39 2.17
3159 3172 2.949644 GCACGATTAGGCCCACTAAAAT 59.050 45.455 0.00 0.00 44.39 1.82
3160 3173 2.361789 GCACGATTAGGCCCACTAAAA 58.638 47.619 0.00 0.00 44.39 1.52
3161 3174 1.741055 CGCACGATTAGGCCCACTAAA 60.741 52.381 0.00 0.00 44.39 1.85
3162 3175 0.179094 CGCACGATTAGGCCCACTAA 60.179 55.000 0.00 0.00 45.24 2.24
3163 3176 1.440060 CGCACGATTAGGCCCACTA 59.560 57.895 0.00 0.00 0.00 2.74
3164 3177 2.186903 CGCACGATTAGGCCCACT 59.813 61.111 0.00 0.00 0.00 4.00
3165 3178 2.895372 CCGCACGATTAGGCCCAC 60.895 66.667 0.00 0.00 0.00 4.61
3166 3179 3.395702 ACCGCACGATTAGGCCCA 61.396 61.111 0.00 0.00 0.00 5.36
3167 3180 2.895372 CACCGCACGATTAGGCCC 60.895 66.667 0.00 0.00 0.00 5.80
3168 3181 2.300850 TACCACCGCACGATTAGGCC 62.301 60.000 0.00 0.00 0.00 5.19
3169 3182 0.249741 ATACCACCGCACGATTAGGC 60.250 55.000 0.00 0.00 0.00 3.93
3170 3183 1.864711 CAATACCACCGCACGATTAGG 59.135 52.381 0.00 0.00 0.00 2.69
3171 3184 1.864711 CCAATACCACCGCACGATTAG 59.135 52.381 0.00 0.00 0.00 1.73
3172 3185 1.481363 TCCAATACCACCGCACGATTA 59.519 47.619 0.00 0.00 0.00 1.75
3173 3186 0.250793 TCCAATACCACCGCACGATT 59.749 50.000 0.00 0.00 0.00 3.34
3174 3187 0.468226 ATCCAATACCACCGCACGAT 59.532 50.000 0.00 0.00 0.00 3.73
3175 3188 0.250793 AATCCAATACCACCGCACGA 59.749 50.000 0.00 0.00 0.00 4.35
3176 3189 1.091537 AAATCCAATACCACCGCACG 58.908 50.000 0.00 0.00 0.00 5.34
3177 3190 1.816224 ACAAATCCAATACCACCGCAC 59.184 47.619 0.00 0.00 0.00 5.34
3178 3191 1.815613 CACAAATCCAATACCACCGCA 59.184 47.619 0.00 0.00 0.00 5.69
3179 3192 1.816224 ACACAAATCCAATACCACCGC 59.184 47.619 0.00 0.00 0.00 5.68
3180 3193 3.062909 CGTACACAAATCCAATACCACCG 59.937 47.826 0.00 0.00 0.00 4.94
3181 3194 3.181504 GCGTACACAAATCCAATACCACC 60.182 47.826 0.00 0.00 0.00 4.61
3182 3195 3.687698 AGCGTACACAAATCCAATACCAC 59.312 43.478 0.00 0.00 0.00 4.16
3183 3196 3.945346 AGCGTACACAAATCCAATACCA 58.055 40.909 0.00 0.00 0.00 3.25
3184 3197 4.957759 AAGCGTACACAAATCCAATACC 57.042 40.909 0.00 0.00 0.00 2.73
3185 3198 5.567534 CACAAAGCGTACACAAATCCAATAC 59.432 40.000 0.00 0.00 0.00 1.89
3186 3199 5.335269 CCACAAAGCGTACACAAATCCAATA 60.335 40.000 0.00 0.00 0.00 1.90
3187 3200 4.545610 CACAAAGCGTACACAAATCCAAT 58.454 39.130 0.00 0.00 0.00 3.16
3188 3201 3.243234 CCACAAAGCGTACACAAATCCAA 60.243 43.478 0.00 0.00 0.00 3.53
3189 3202 2.292016 CCACAAAGCGTACACAAATCCA 59.708 45.455 0.00 0.00 0.00 3.41
3190 3203 2.351350 CCCACAAAGCGTACACAAATCC 60.351 50.000 0.00 0.00 0.00 3.01
3191 3204 2.351350 CCCCACAAAGCGTACACAAATC 60.351 50.000 0.00 0.00 0.00 2.17
3192 3205 1.611491 CCCCACAAAGCGTACACAAAT 59.389 47.619 0.00 0.00 0.00 2.32
3193 3206 1.025812 CCCCACAAAGCGTACACAAA 58.974 50.000 0.00 0.00 0.00 2.83
3194 3207 0.107116 ACCCCACAAAGCGTACACAA 60.107 50.000 0.00 0.00 0.00 3.33
3195 3208 0.816018 CACCCCACAAAGCGTACACA 60.816 55.000 0.00 0.00 0.00 3.72
3196 3209 0.816421 ACACCCCACAAAGCGTACAC 60.816 55.000 0.00 0.00 0.00 2.90
3197 3210 0.816018 CACACCCCACAAAGCGTACA 60.816 55.000 0.00 0.00 0.00 2.90
3198 3211 1.946267 CACACCCCACAAAGCGTAC 59.054 57.895 0.00 0.00 0.00 3.67
3199 3212 1.894756 GCACACCCCACAAAGCGTA 60.895 57.895 0.00 0.00 0.00 4.42
3200 3213 3.216292 GCACACCCCACAAAGCGT 61.216 61.111 0.00 0.00 0.00 5.07
3201 3214 2.015227 AAAGCACACCCCACAAAGCG 62.015 55.000 0.00 0.00 0.00 4.68
3202 3215 1.036707 TAAAGCACACCCCACAAAGC 58.963 50.000 0.00 0.00 0.00 3.51
3203 3216 3.810310 TTTAAAGCACACCCCACAAAG 57.190 42.857 0.00 0.00 0.00 2.77
3204 3217 4.020128 ACTTTTTAAAGCACACCCCACAAA 60.020 37.500 2.23 0.00 39.63 2.83
3205 3218 3.515901 ACTTTTTAAAGCACACCCCACAA 59.484 39.130 2.23 0.00 39.63 3.33
3206 3219 3.100671 ACTTTTTAAAGCACACCCCACA 58.899 40.909 2.23 0.00 39.63 4.17
3207 3220 3.812156 ACTTTTTAAAGCACACCCCAC 57.188 42.857 2.23 0.00 39.63 4.61
3208 3221 4.828072 AAACTTTTTAAAGCACACCCCA 57.172 36.364 2.23 0.00 39.63 4.96
3209 3222 7.795482 ATAAAAACTTTTTAAAGCACACCCC 57.205 32.000 10.12 0.00 39.63 4.95
3210 3223 9.497030 CAAATAAAAACTTTTTAAAGCACACCC 57.503 29.630 10.12 0.00 39.63 4.61
3350 3365 1.032114 GGCGCCTAATTGCACCTCTT 61.032 55.000 22.15 0.00 30.66 2.85
3357 3373 1.064783 GCTCAAGGCGCCTAATTGC 59.935 57.895 33.07 25.97 0.00 3.56
3390 3406 0.387202 AGATAGCTAGTGTGCGCCAG 59.613 55.000 4.18 0.00 38.13 4.85
3405 3421 2.502130 TGACGTGTGGCCCAATAAGATA 59.498 45.455 0.00 0.00 0.00 1.98
3422 3438 1.469308 AGCGAAAGAGGAGTAGTGACG 59.531 52.381 0.00 0.00 0.00 4.35
3453 3469 3.003275 ACCGAACGACAAAACGAGTAGTA 59.997 43.478 0.00 0.00 37.03 1.82
3454 3470 2.223572 ACCGAACGACAAAACGAGTAGT 60.224 45.455 0.00 0.00 37.03 2.73
3455 3471 2.152489 CACCGAACGACAAAACGAGTAG 59.848 50.000 0.00 0.00 37.03 2.57
3579 3598 7.543868 TCACAAACTGTTTTCAAATTCGTGAAT 59.456 29.630 13.14 0.00 37.36 2.57
3610 3629 8.604890 TCGGTTGGTTTAAATTTGATTGAAAAC 58.395 29.630 0.00 2.43 32.03 2.43
3704 3723 0.320771 GGAAACTCCTCTCGCAAGCA 60.321 55.000 0.00 0.00 32.53 3.91
3711 3730 3.307550 GGGTACAAAGGGAAACTCCTCTC 60.308 52.174 0.00 0.00 36.57 3.20
3739 3758 2.118679 CATGTGACTCCCTATGGGTCA 58.881 52.381 2.25 4.88 44.74 4.02
3765 3784 1.961394 TCTGAGTAGGACGCTTGTGTT 59.039 47.619 0.00 0.00 0.00 3.32
3768 3787 2.726832 GTTCTGAGTAGGACGCTTGT 57.273 50.000 0.00 0.00 0.00 3.16
3783 3802 3.192466 GTTAATATGTGTCGCCCGTTCT 58.808 45.455 0.00 0.00 0.00 3.01
3835 3854 9.733556 TTCAAGTTTTTATATTGGAGAGCACTA 57.266 29.630 0.00 0.00 0.00 2.74
3872 3891 1.926561 TCAAATGGAGACGATGCGAG 58.073 50.000 0.00 0.00 0.00 5.03
3874 3893 2.609002 TCAATCAAATGGAGACGATGCG 59.391 45.455 0.00 0.00 0.00 4.73
3891 3910 8.118600 AGGATATTGGTTTTCCTTCTCTTCAAT 58.881 33.333 0.00 0.00 36.46 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.