Multiple sequence alignment - TraesCS1A01G037900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G037900 chr1A 100.000 4083 0 0 1001 5083 20980678 20976596 0.000000e+00 7540
1 TraesCS1A01G037900 chr1A 100.000 534 0 0 1 534 20981678 20981145 0.000000e+00 987
2 TraesCS1A01G037900 chr1D 93.089 2923 122 22 2039 4915 19129212 19126324 0.000000e+00 4205
3 TraesCS1A01G037900 chr1D 89.684 601 49 4 1284 1884 19129863 19129276 0.000000e+00 754
4 TraesCS1A01G037900 chr1D 83.214 280 21 14 1001 1267 19130182 19129916 3.060000e-57 233
5 TraesCS1A01G037900 chr1B 89.633 3106 198 53 1893 4911 28563360 28560292 0.000000e+00 3838
6 TraesCS1A01G037900 chr1B 81.464 847 118 17 1001 1820 28564446 28563612 0.000000e+00 658
7 TraesCS1A01G037900 chr1B 90.826 327 15 2 1 315 188259781 188260104 1.690000e-114 424
8 TraesCS1A01G037900 chr1B 89.796 343 5 7 1 315 277964656 277964996 3.660000e-111 412
9 TraesCS1A01G037900 chr3B 92.771 332 10 3 1 320 141865296 141865625 7.710000e-128 468
10 TraesCS1A01G037900 chr7B 92.049 327 12 3 1 315 351929708 351929384 1.000000e-121 448
11 TraesCS1A01G037900 chr7B 91.131 327 14 3 1 315 246018774 246018451 3.640000e-116 429
12 TraesCS1A01G037900 chr4A 92.049 327 12 3 1 315 637414203 637413879 1.000000e-121 448
13 TraesCS1A01G037900 chr4A 89.796 343 6 7 1 315 674355547 674355888 3.660000e-111 412
14 TraesCS1A01G037900 chr4A 88.539 349 10 8 1 321 465208677 465209023 3.690000e-106 396
15 TraesCS1A01G037900 chr4A 84.639 332 26 14 1 318 620262308 620262628 1.780000e-79 307
16 TraesCS1A01G037900 chr7A 92.523 321 9 7 1 315 99701456 99701767 3.610000e-121 446
17 TraesCS1A01G037900 chr4B 92.260 323 12 2 1 311 671837012 671837333 3.610000e-121 446
18 TraesCS1A01G037900 chr5B 90.517 348 4 7 1 320 72093507 72093161 2.810000e-117 433
19 TraesCS1A01G037900 chr5B 90.663 332 12 11 1 315 679824173 679824502 1.690000e-114 424
20 TraesCS1A01G037900 chr5B 90.549 328 17 3 1 316 384739638 384739963 6.080000e-114 422
21 TraesCS1A01G037900 chr5B 89.337 347 8 7 1 319 50496700 50496355 4.740000e-110 409
22 TraesCS1A01G037900 chr5B 89.080 348 8 8 1 319 604719532 604719186 6.130000e-109 405
23 TraesCS1A01G037900 chr5B 89.837 246 5 12 1 231 294771584 294771344 1.070000e-76 298
24 TraesCS1A01G037900 chr2B 89.017 346 8 8 1 318 676743313 676742970 7.930000e-108 401
25 TraesCS1A01G037900 chr2B 87.572 346 10 9 1 317 557355092 557355433 2.240000e-98 370
26 TraesCS1A01G037900 chr2B 84.456 193 26 4 131 320 126946603 126946794 2.420000e-43 187
27 TraesCS1A01G037900 chr2B 82.237 152 24 3 166 317 671166208 671166356 1.490000e-25 128


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G037900 chr1A 20976596 20981678 5082 True 4263.500000 7540 100.000000 1 5083 2 chr1A.!!$R1 5082
1 TraesCS1A01G037900 chr1D 19126324 19130182 3858 True 1730.666667 4205 88.662333 1001 4915 3 chr1D.!!$R1 3914
2 TraesCS1A01G037900 chr1B 28560292 28564446 4154 True 2248.000000 3838 85.548500 1001 4911 2 chr1B.!!$R1 3910

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
409 410 0.030909 TCCCCCTCCGCCACTATTTA 60.031 55.0 0.00 0.00 0.00 1.40 F
1094 1116 0.040336 TTCTCGTCACTGTCGACTGC 60.040 55.0 20.88 5.55 33.54 4.40 F
1678 1742 0.107312 AGGACTCATGCTGTGATGCC 60.107 55.0 0.00 0.00 35.97 4.40 F
2871 3170 0.323360 TTGGCACCTCCATTGGTAGC 60.323 55.0 1.86 3.10 46.04 3.58 F
3363 3693 0.031817 CCCCTGCCCAATCCATCTTT 60.032 55.0 0.00 0.00 0.00 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1582 1646 0.178964 CCTTCTTCAACCCCAAGCCA 60.179 55.000 0.00 0.00 0.00 4.75 R
2940 3239 0.171231 GGAAGCTGGTTCCGCATTTC 59.829 55.000 21.45 0.00 45.69 2.17 R
3234 3564 4.149046 CGACCAGCGATTCTTTAGATAAGC 59.851 45.833 0.00 0.00 44.57 3.09 R
3732 4101 0.471211 TCGTGGGTCCTGATATCCCC 60.471 60.000 7.62 7.62 40.41 4.81 R
5040 5421 0.037232 GTGCTCGTAGTTGCTTCCCT 60.037 55.000 0.00 0.00 0.00 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 2.841044 CCCAGGTACGGCCCGTAT 60.841 66.667 20.41 0.60 44.12 3.06
39 40 2.420043 CCAGGTACGGCCCGTATG 59.580 66.667 20.41 14.26 44.12 2.39
40 41 2.279918 CAGGTACGGCCCGTATGC 60.280 66.667 20.41 7.34 44.12 3.14
41 42 2.443390 AGGTACGGCCCGTATGCT 60.443 61.111 20.41 0.00 44.12 3.79
42 43 1.152694 AGGTACGGCCCGTATGCTA 60.153 57.895 20.41 0.00 44.12 3.49
43 44 0.756442 AGGTACGGCCCGTATGCTAA 60.756 55.000 20.41 0.00 44.12 3.09
44 45 0.319405 GGTACGGCCCGTATGCTAAT 59.681 55.000 20.41 0.00 44.12 1.73
45 46 1.670967 GGTACGGCCCGTATGCTAATC 60.671 57.143 20.41 4.22 44.12 1.75
46 47 0.241749 TACGGCCCGTATGCTAATCG 59.758 55.000 12.92 0.00 41.54 3.34
47 48 1.736645 CGGCCCGTATGCTAATCGG 60.737 63.158 0.00 0.00 43.30 4.18
50 51 4.278956 CCGTATGCTAATCGGGCC 57.721 61.111 0.00 0.00 40.49 5.80
51 52 1.736645 CCGTATGCTAATCGGGCCG 60.737 63.158 22.51 22.51 40.49 6.13
52 53 1.736645 CGTATGCTAATCGGGCCGG 60.737 63.158 27.98 11.17 0.00 6.13
53 54 2.033194 GTATGCTAATCGGGCCGGC 61.033 63.158 27.98 21.18 0.00 6.13
54 55 3.248446 TATGCTAATCGGGCCGGCC 62.248 63.158 38.57 38.57 0.00 6.13
68 69 3.335711 GGCCCAGCCCACTAATCT 58.664 61.111 0.00 0.00 44.06 2.40
69 70 2.539983 GGCCCAGCCCACTAATCTA 58.460 57.895 0.00 0.00 44.06 1.98
70 71 0.108774 GGCCCAGCCCACTAATCTAC 59.891 60.000 0.00 0.00 44.06 2.59
71 72 0.108774 GCCCAGCCCACTAATCTACC 59.891 60.000 0.00 0.00 0.00 3.18
72 73 1.807814 CCCAGCCCACTAATCTACCT 58.192 55.000 0.00 0.00 0.00 3.08
73 74 1.694696 CCCAGCCCACTAATCTACCTC 59.305 57.143 0.00 0.00 0.00 3.85
74 75 1.694696 CCAGCCCACTAATCTACCTCC 59.305 57.143 0.00 0.00 0.00 4.30
75 76 2.683768 CAGCCCACTAATCTACCTCCT 58.316 52.381 0.00 0.00 0.00 3.69
76 77 3.438078 CCAGCCCACTAATCTACCTCCTA 60.438 52.174 0.00 0.00 0.00 2.94
77 78 4.421131 CAGCCCACTAATCTACCTCCTAT 58.579 47.826 0.00 0.00 0.00 2.57
78 79 4.841246 CAGCCCACTAATCTACCTCCTATT 59.159 45.833 0.00 0.00 0.00 1.73
79 80 5.308237 CAGCCCACTAATCTACCTCCTATTT 59.692 44.000 0.00 0.00 0.00 1.40
80 81 5.911766 AGCCCACTAATCTACCTCCTATTTT 59.088 40.000 0.00 0.00 0.00 1.82
81 82 5.998363 GCCCACTAATCTACCTCCTATTTTG 59.002 44.000 0.00 0.00 0.00 2.44
82 83 5.998363 CCCACTAATCTACCTCCTATTTTGC 59.002 44.000 0.00 0.00 0.00 3.68
83 84 5.696724 CCACTAATCTACCTCCTATTTTGCG 59.303 44.000 0.00 0.00 0.00 4.85
84 85 5.177696 CACTAATCTACCTCCTATTTTGCGC 59.822 44.000 0.00 0.00 0.00 6.09
85 86 3.838244 ATCTACCTCCTATTTTGCGCA 57.162 42.857 5.66 5.66 0.00 6.09
86 87 3.838244 TCTACCTCCTATTTTGCGCAT 57.162 42.857 12.75 0.00 0.00 4.73
87 88 4.150897 TCTACCTCCTATTTTGCGCATT 57.849 40.909 12.75 1.44 0.00 3.56
88 89 3.876914 TCTACCTCCTATTTTGCGCATTG 59.123 43.478 12.75 0.00 0.00 2.82
89 90 2.722094 ACCTCCTATTTTGCGCATTGA 58.278 42.857 12.75 0.00 0.00 2.57
90 91 2.684881 ACCTCCTATTTTGCGCATTGAG 59.315 45.455 12.75 10.76 0.00 3.02
91 92 2.542411 CCTCCTATTTTGCGCATTGAGC 60.542 50.000 12.75 5.34 40.87 4.26
119 120 5.907866 TTAGCCTATTTTTACCTGTTGGC 57.092 39.130 0.00 0.00 39.40 4.52
120 121 3.096852 AGCCTATTTTTACCTGTTGGCC 58.903 45.455 0.00 0.00 39.90 5.36
121 122 2.167693 GCCTATTTTTACCTGTTGGCCC 59.832 50.000 0.00 0.00 36.63 5.80
122 123 3.436243 CCTATTTTTACCTGTTGGCCCA 58.564 45.455 0.00 0.00 36.63 5.36
123 124 4.030216 CCTATTTTTACCTGTTGGCCCAT 58.970 43.478 0.00 0.00 36.63 4.00
124 125 5.205056 CCTATTTTTACCTGTTGGCCCATA 58.795 41.667 0.00 0.00 36.63 2.74
125 126 5.838521 CCTATTTTTACCTGTTGGCCCATAT 59.161 40.000 0.00 0.00 36.63 1.78
126 127 6.326323 CCTATTTTTACCTGTTGGCCCATATT 59.674 38.462 0.00 0.00 36.63 1.28
127 128 7.507616 CCTATTTTTACCTGTTGGCCCATATTA 59.492 37.037 0.00 0.00 36.63 0.98
128 129 6.783708 TTTTTACCTGTTGGCCCATATTAG 57.216 37.500 0.00 0.00 36.63 1.73
129 130 5.718801 TTTACCTGTTGGCCCATATTAGA 57.281 39.130 0.00 0.00 36.63 2.10
130 131 5.718801 TTACCTGTTGGCCCATATTAGAA 57.281 39.130 0.00 0.00 36.63 2.10
131 132 4.814224 ACCTGTTGGCCCATATTAGAAT 57.186 40.909 0.00 0.00 36.63 2.40
132 133 5.922960 ACCTGTTGGCCCATATTAGAATA 57.077 39.130 0.00 0.00 36.63 1.75
133 134 5.631119 ACCTGTTGGCCCATATTAGAATAC 58.369 41.667 0.00 0.00 36.63 1.89
134 135 5.133660 ACCTGTTGGCCCATATTAGAATACA 59.866 40.000 0.00 0.00 36.63 2.29
135 136 6.183361 ACCTGTTGGCCCATATTAGAATACAT 60.183 38.462 0.00 0.00 36.63 2.29
136 137 7.018149 ACCTGTTGGCCCATATTAGAATACATA 59.982 37.037 0.00 0.00 36.63 2.29
137 138 7.888021 CCTGTTGGCCCATATTAGAATACATAA 59.112 37.037 0.00 0.00 0.00 1.90
138 139 9.295825 CTGTTGGCCCATATTAGAATACATAAA 57.704 33.333 0.00 0.00 0.00 1.40
139 140 9.647918 TGTTGGCCCATATTAGAATACATAAAA 57.352 29.630 0.00 0.00 0.00 1.52
168 169 0.524414 AAAAGTTAATCGGGCCGTGC 59.476 50.000 27.32 12.25 0.00 5.34
206 207 4.748144 CCCTTCAGGCCCAGGCAC 62.748 72.222 11.50 0.00 44.11 5.01
247 248 4.733542 GGCCTGGCCCGTTTAGCA 62.734 66.667 27.77 0.00 44.06 3.49
248 249 3.440415 GCCTGGCCCGTTTAGCAC 61.440 66.667 7.66 0.00 0.00 4.40
253 254 4.097863 GCCCGTTTAGCACGTGCC 62.098 66.667 35.51 19.74 45.60 5.01
294 295 4.581093 GGCCGGCCCAACTATCCC 62.581 72.222 36.64 5.01 0.00 3.85
295 296 4.929707 GCCGGCCCAACTATCCCG 62.930 72.222 18.11 0.00 40.39 5.14
297 298 4.929707 CGGCCCAACTATCCCGGC 62.930 72.222 0.00 0.00 40.85 6.13
299 300 4.581093 GCCCAACTATCCCGGCCC 62.581 72.222 0.00 0.00 35.23 5.80
300 301 4.250305 CCCAACTATCCCGGCCCG 62.250 72.222 0.00 0.00 0.00 6.13
301 302 3.476419 CCAACTATCCCGGCCCGT 61.476 66.667 0.85 0.00 0.00 5.28
302 303 2.587889 CAACTATCCCGGCCCGTT 59.412 61.111 0.85 0.00 0.00 4.44
303 304 1.078001 CAACTATCCCGGCCCGTTT 60.078 57.895 0.85 0.00 0.00 3.60
304 305 1.078001 AACTATCCCGGCCCGTTTG 60.078 57.895 0.85 0.00 0.00 2.93
305 306 2.203153 CTATCCCGGCCCGTTTGG 60.203 66.667 0.85 0.00 37.09 3.28
315 316 2.702847 CCCGTTTGGCCAGCTATAC 58.297 57.895 5.11 0.00 0.00 1.47
316 317 0.818040 CCCGTTTGGCCAGCTATACC 60.818 60.000 5.11 0.00 0.00 2.73
317 318 0.818040 CCGTTTGGCCAGCTATACCC 60.818 60.000 5.11 0.00 0.00 3.69
318 319 0.818040 CGTTTGGCCAGCTATACCCC 60.818 60.000 5.11 0.00 0.00 4.95
319 320 0.818040 GTTTGGCCAGCTATACCCCG 60.818 60.000 5.11 0.00 0.00 5.73
320 321 1.990160 TTTGGCCAGCTATACCCCGG 61.990 60.000 5.11 0.00 0.00 5.73
321 322 3.637273 GGCCAGCTATACCCCGGG 61.637 72.222 15.80 15.80 0.00 5.73
322 323 3.637273 GCCAGCTATACCCCGGGG 61.637 72.222 39.18 39.18 42.03 5.73
323 324 3.637273 CCAGCTATACCCCGGGGC 61.637 72.222 40.67 24.99 39.32 5.80
324 325 4.003788 CAGCTATACCCCGGGGCG 62.004 72.222 40.67 25.13 39.32 6.13
327 328 4.309950 CTATACCCCGGGGCGCAC 62.310 72.222 40.67 4.83 39.32 5.34
354 355 4.947147 GACAAGCCGGCCACCACA 62.947 66.667 26.15 0.00 0.00 4.17
364 365 4.636435 CCACCACACGTGTCCCCC 62.636 72.222 20.49 0.00 41.26 5.40
379 380 2.192175 CCCCCTTATCCACACCGC 59.808 66.667 0.00 0.00 0.00 5.68
380 381 2.375345 CCCCCTTATCCACACCGCT 61.375 63.158 0.00 0.00 0.00 5.52
381 382 1.146263 CCCCTTATCCACACCGCTC 59.854 63.158 0.00 0.00 0.00 5.03
382 383 1.338136 CCCCTTATCCACACCGCTCT 61.338 60.000 0.00 0.00 0.00 4.09
383 384 0.105039 CCCTTATCCACACCGCTCTC 59.895 60.000 0.00 0.00 0.00 3.20
384 385 0.105039 CCTTATCCACACCGCTCTCC 59.895 60.000 0.00 0.00 0.00 3.71
385 386 0.105039 CTTATCCACACCGCTCTCCC 59.895 60.000 0.00 0.00 0.00 4.30
386 387 0.325296 TTATCCACACCGCTCTCCCT 60.325 55.000 0.00 0.00 0.00 4.20
387 388 0.755698 TATCCACACCGCTCTCCCTC 60.756 60.000 0.00 0.00 0.00 4.30
388 389 2.805313 ATCCACACCGCTCTCCCTCA 62.805 60.000 0.00 0.00 0.00 3.86
389 390 2.262915 CACACCGCTCTCCCTCAC 59.737 66.667 0.00 0.00 0.00 3.51
390 391 2.118513 ACACCGCTCTCCCTCACT 59.881 61.111 0.00 0.00 0.00 3.41
391 392 1.979693 ACACCGCTCTCCCTCACTC 60.980 63.158 0.00 0.00 0.00 3.51
392 393 2.363147 ACCGCTCTCCCTCACTCC 60.363 66.667 0.00 0.00 0.00 3.85
393 394 3.151022 CCGCTCTCCCTCACTCCC 61.151 72.222 0.00 0.00 0.00 4.30
394 395 3.151022 CGCTCTCCCTCACTCCCC 61.151 72.222 0.00 0.00 0.00 4.81
395 396 2.766229 GCTCTCCCTCACTCCCCC 60.766 72.222 0.00 0.00 0.00 5.40
396 397 3.114390 CTCTCCCTCACTCCCCCT 58.886 66.667 0.00 0.00 0.00 4.79
397 398 1.075600 CTCTCCCTCACTCCCCCTC 60.076 68.421 0.00 0.00 0.00 4.30
398 399 2.041405 CTCCCTCACTCCCCCTCC 60.041 72.222 0.00 0.00 0.00 4.30
399 400 4.075793 TCCCTCACTCCCCCTCCG 62.076 72.222 0.00 0.00 0.00 4.63
405 406 3.680196 ACTCCCCCTCCGCCACTA 61.680 66.667 0.00 0.00 0.00 2.74
406 407 2.122813 CTCCCCCTCCGCCACTAT 60.123 66.667 0.00 0.00 0.00 2.12
407 408 1.766461 CTCCCCCTCCGCCACTATT 60.766 63.158 0.00 0.00 0.00 1.73
408 409 1.307517 TCCCCCTCCGCCACTATTT 60.308 57.895 0.00 0.00 0.00 1.40
409 410 0.030909 TCCCCCTCCGCCACTATTTA 60.031 55.000 0.00 0.00 0.00 1.40
410 411 1.064825 CCCCCTCCGCCACTATTTAT 58.935 55.000 0.00 0.00 0.00 1.40
411 412 2.158127 TCCCCCTCCGCCACTATTTATA 60.158 50.000 0.00 0.00 0.00 0.98
412 413 2.640826 CCCCCTCCGCCACTATTTATAA 59.359 50.000 0.00 0.00 0.00 0.98
413 414 3.307480 CCCCCTCCGCCACTATTTATAAG 60.307 52.174 0.00 0.00 0.00 1.73
414 415 3.335579 CCCTCCGCCACTATTTATAAGC 58.664 50.000 0.00 0.00 0.00 3.09
415 416 3.008049 CCCTCCGCCACTATTTATAAGCT 59.992 47.826 0.00 0.00 0.00 3.74
416 417 4.246458 CCTCCGCCACTATTTATAAGCTC 58.754 47.826 0.00 0.00 0.00 4.09
417 418 4.246458 CTCCGCCACTATTTATAAGCTCC 58.754 47.826 0.00 0.00 0.00 4.70
418 419 3.007614 TCCGCCACTATTTATAAGCTCCC 59.992 47.826 0.00 0.00 0.00 4.30
419 420 3.335579 CGCCACTATTTATAAGCTCCCC 58.664 50.000 0.00 0.00 0.00 4.81
420 421 3.687125 GCCACTATTTATAAGCTCCCCC 58.313 50.000 0.00 0.00 0.00 5.40
421 422 3.868754 GCCACTATTTATAAGCTCCCCCG 60.869 52.174 0.00 0.00 0.00 5.73
422 423 3.581332 CCACTATTTATAAGCTCCCCCGA 59.419 47.826 0.00 0.00 0.00 5.14
423 424 4.322801 CCACTATTTATAAGCTCCCCCGAG 60.323 50.000 0.00 0.00 39.33 4.63
424 425 4.527038 CACTATTTATAAGCTCCCCCGAGA 59.473 45.833 0.00 0.00 38.52 4.04
425 426 5.011738 CACTATTTATAAGCTCCCCCGAGAA 59.988 44.000 0.00 0.00 38.52 2.87
426 427 4.625607 ATTTATAAGCTCCCCCGAGAAG 57.374 45.455 0.00 0.00 38.52 2.85
427 428 3.323774 TTATAAGCTCCCCCGAGAAGA 57.676 47.619 0.00 0.00 38.52 2.87
428 429 1.415200 ATAAGCTCCCCCGAGAAGAC 58.585 55.000 0.00 0.00 38.52 3.01
429 430 0.335361 TAAGCTCCCCCGAGAAGACT 59.665 55.000 0.00 0.00 38.52 3.24
430 431 0.545548 AAGCTCCCCCGAGAAGACTT 60.546 55.000 0.00 0.00 38.52 3.01
431 432 1.219393 GCTCCCCCGAGAAGACTTG 59.781 63.158 0.00 0.00 38.52 3.16
432 433 1.258445 GCTCCCCCGAGAAGACTTGA 61.258 60.000 0.00 0.00 38.52 3.02
433 434 0.533032 CTCCCCCGAGAAGACTTGAC 59.467 60.000 0.00 0.00 38.52 3.18
434 435 0.114560 TCCCCCGAGAAGACTTGACT 59.885 55.000 0.00 0.00 0.00 3.41
435 436 0.977395 CCCCCGAGAAGACTTGACTT 59.023 55.000 0.00 0.00 0.00 3.01
436 437 1.066787 CCCCCGAGAAGACTTGACTTC 60.067 57.143 0.00 0.00 44.36 3.01
437 438 1.066787 CCCCGAGAAGACTTGACTTCC 60.067 57.143 8.68 2.00 44.90 3.46
438 439 1.618837 CCCGAGAAGACTTGACTTCCA 59.381 52.381 8.68 0.00 44.90 3.53
439 440 2.234908 CCCGAGAAGACTTGACTTCCAT 59.765 50.000 8.68 0.00 44.90 3.41
440 441 3.307059 CCCGAGAAGACTTGACTTCCATT 60.307 47.826 8.68 0.00 44.90 3.16
441 442 3.929610 CCGAGAAGACTTGACTTCCATTC 59.070 47.826 8.68 1.62 44.90 2.67
442 443 3.610242 CGAGAAGACTTGACTTCCATTCG 59.390 47.826 8.68 8.22 44.90 3.34
443 444 3.330267 AGAAGACTTGACTTCCATTCGC 58.670 45.455 8.68 0.00 44.90 4.70
444 445 1.714794 AGACTTGACTTCCATTCGCG 58.285 50.000 0.00 0.00 0.00 5.87
445 446 1.272490 AGACTTGACTTCCATTCGCGA 59.728 47.619 3.71 3.71 0.00 5.87
446 447 1.390463 GACTTGACTTCCATTCGCGAC 59.610 52.381 9.15 0.00 0.00 5.19
447 448 0.366871 CTTGACTTCCATTCGCGACG 59.633 55.000 9.15 2.28 0.00 5.12
448 449 1.011968 TTGACTTCCATTCGCGACGG 61.012 55.000 9.15 13.50 0.00 4.79
449 450 2.799540 GACTTCCATTCGCGACGGC 61.800 63.158 9.15 0.00 0.00 5.68
450 451 2.813474 CTTCCATTCGCGACGGCA 60.813 61.111 9.15 1.41 39.92 5.69
451 452 3.083600 CTTCCATTCGCGACGGCAC 62.084 63.158 9.15 0.00 39.92 5.01
452 453 3.867700 TTCCATTCGCGACGGCACA 62.868 57.895 9.15 0.00 39.92 4.57
453 454 3.418913 CCATTCGCGACGGCACAA 61.419 61.111 9.15 0.00 39.92 3.33
454 455 2.096406 CATTCGCGACGGCACAAG 59.904 61.111 9.15 0.00 39.92 3.16
455 456 3.788766 ATTCGCGACGGCACAAGC 61.789 61.111 9.15 0.00 39.92 4.01
458 459 4.724697 CGCGACGGCACAAGCAAG 62.725 66.667 0.00 0.00 44.61 4.01
459 460 3.345808 GCGACGGCACAAGCAAGA 61.346 61.111 0.00 0.00 44.61 3.02
460 461 2.892334 GCGACGGCACAAGCAAGAA 61.892 57.895 0.00 0.00 44.61 2.52
461 462 1.205064 CGACGGCACAAGCAAGAAG 59.795 57.895 0.00 0.00 44.61 2.85
462 463 1.221466 CGACGGCACAAGCAAGAAGA 61.221 55.000 0.00 0.00 44.61 2.87
463 464 0.514691 GACGGCACAAGCAAGAAGAG 59.485 55.000 0.00 0.00 44.61 2.85
464 465 0.106708 ACGGCACAAGCAAGAAGAGA 59.893 50.000 0.00 0.00 44.61 3.10
465 466 0.795085 CGGCACAAGCAAGAAGAGAG 59.205 55.000 0.00 0.00 44.61 3.20
466 467 1.163554 GGCACAAGCAAGAAGAGAGG 58.836 55.000 0.00 0.00 44.61 3.69
467 468 1.271054 GGCACAAGCAAGAAGAGAGGA 60.271 52.381 0.00 0.00 44.61 3.71
468 469 2.498167 GCACAAGCAAGAAGAGAGGAA 58.502 47.619 0.00 0.00 41.58 3.36
469 470 2.880890 GCACAAGCAAGAAGAGAGGAAA 59.119 45.455 0.00 0.00 41.58 3.13
470 471 3.316308 GCACAAGCAAGAAGAGAGGAAAA 59.684 43.478 0.00 0.00 41.58 2.29
471 472 4.202050 GCACAAGCAAGAAGAGAGGAAAAA 60.202 41.667 0.00 0.00 41.58 1.94
490 491 2.159179 AAAAATCCCCAATCCCTCCG 57.841 50.000 0.00 0.00 0.00 4.63
491 492 0.397114 AAAATCCCCAATCCCTCCGC 60.397 55.000 0.00 0.00 0.00 5.54
492 493 2.298335 AAATCCCCAATCCCTCCGCC 62.298 60.000 0.00 0.00 0.00 6.13
495 496 4.506255 CCCAATCCCTCCGCCCAC 62.506 72.222 0.00 0.00 0.00 4.61
496 497 4.506255 CCAATCCCTCCGCCCACC 62.506 72.222 0.00 0.00 0.00 4.61
497 498 4.506255 CAATCCCTCCGCCCACCC 62.506 72.222 0.00 0.00 0.00 4.61
503 504 4.394712 CTCCGCCCACCCACTCAC 62.395 72.222 0.00 0.00 0.00 3.51
507 508 3.570212 GCCCACCCACTCACCACT 61.570 66.667 0.00 0.00 0.00 4.00
508 509 2.431683 CCCACCCACTCACCACTG 59.568 66.667 0.00 0.00 0.00 3.66
509 510 2.281761 CCACCCACTCACCACTGC 60.282 66.667 0.00 0.00 0.00 4.40
510 511 2.822637 CCACCCACTCACCACTGCT 61.823 63.158 0.00 0.00 0.00 4.24
511 512 1.302033 CACCCACTCACCACTGCTC 60.302 63.158 0.00 0.00 0.00 4.26
512 513 2.348998 CCCACTCACCACTGCTCC 59.651 66.667 0.00 0.00 0.00 4.70
513 514 2.219875 CCCACTCACCACTGCTCCT 61.220 63.158 0.00 0.00 0.00 3.69
514 515 1.294780 CCACTCACCACTGCTCCTC 59.705 63.158 0.00 0.00 0.00 3.71
515 516 1.080230 CACTCACCACTGCTCCTCG 60.080 63.158 0.00 0.00 0.00 4.63
516 517 2.125753 CTCACCACTGCTCCTCGC 60.126 66.667 0.00 0.00 39.77 5.03
517 518 3.655810 CTCACCACTGCTCCTCGCC 62.656 68.421 0.00 0.00 38.05 5.54
518 519 4.767255 CACCACTGCTCCTCGCCC 62.767 72.222 0.00 0.00 38.05 6.13
520 521 4.154347 CCACTGCTCCTCGCCCTC 62.154 72.222 0.00 0.00 38.05 4.30
521 522 4.154347 CACTGCTCCTCGCCCTCC 62.154 72.222 0.00 0.00 38.05 4.30
1047 1055 1.230314 CTTCCCCCTCCCCTTCCTT 60.230 63.158 0.00 0.00 0.00 3.36
1048 1056 1.543896 TTCCCCCTCCCCTTCCTTG 60.544 63.158 0.00 0.00 0.00 3.61
1057 1072 0.911525 CCCCTTCCTTGCTCCTCTCA 60.912 60.000 0.00 0.00 0.00 3.27
1059 1074 1.140652 CCCTTCCTTGCTCCTCTCATC 59.859 57.143 0.00 0.00 0.00 2.92
1073 1088 2.020720 TCTCATCGCTGGACTTCTCTC 58.979 52.381 0.00 0.00 0.00 3.20
1090 1112 1.157585 CTCCTTCTCGTCACTGTCGA 58.842 55.000 0.00 0.00 35.96 4.20
1091 1113 0.873054 TCCTTCTCGTCACTGTCGAC 59.127 55.000 9.11 9.11 33.71 4.20
1092 1114 0.875728 CCTTCTCGTCACTGTCGACT 59.124 55.000 17.92 0.00 33.54 4.18
1093 1115 1.400371 CCTTCTCGTCACTGTCGACTG 60.400 57.143 19.56 19.56 33.54 3.51
1094 1116 0.040336 TTCTCGTCACTGTCGACTGC 60.040 55.000 20.88 5.55 33.54 4.40
1095 1117 1.442857 CTCGTCACTGTCGACTGCC 60.443 63.158 20.88 9.28 33.54 4.85
1096 1118 2.430921 CGTCACTGTCGACTGCCC 60.431 66.667 20.88 8.96 33.54 5.36
1102 1124 3.241530 TGTCGACTGCCCTGCCTT 61.242 61.111 17.92 0.00 0.00 4.35
1107 1129 2.282745 ACTGCCCTGCCTTTGCTC 60.283 61.111 0.00 0.00 38.71 4.26
1174 1196 1.627329 ACCGACCCCCTCTCTTTTAAC 59.373 52.381 0.00 0.00 0.00 2.01
1234 1256 6.776094 AGCACTGTCGATCTTTTTAATTAGC 58.224 36.000 0.00 0.00 0.00 3.09
1252 1280 1.260561 AGCACTGCTGTTTAACGTTCG 59.739 47.619 2.82 0.00 37.57 3.95
1256 1284 4.782822 GCACTGCTGTTTAACGTTCGTTTA 60.783 41.667 15.40 4.37 0.00 2.01
1264 1292 7.566858 TGTTTAACGTTCGTTTAGGATCTAC 57.433 36.000 15.40 2.51 0.00 2.59
1272 1300 5.997732 TCGTTTAGGATCTACGAAAAACG 57.002 39.130 10.84 10.84 46.22 3.60
1273 1301 4.858692 TCGTTTAGGATCTACGAAAAACGG 59.141 41.667 15.44 1.48 45.41 4.44
1274 1302 5.335583 TCGTTTAGGATCTACGAAAAACGGA 60.336 40.000 15.44 3.38 45.41 4.69
1281 1345 1.925185 CTACGAAAAACGGAGCTAGCC 59.075 52.381 12.13 2.59 46.20 3.93
1315 1379 4.141846 TGGATCCTTAATCAGTCAGCTCAC 60.142 45.833 14.23 0.00 35.96 3.51
1320 1384 1.649664 AATCAGTCAGCTCACGATGC 58.350 50.000 0.00 0.00 0.00 3.91
1332 1396 1.150536 ACGATGCCCTTGTGGTTGT 59.849 52.632 0.00 0.00 36.04 3.32
1348 1412 0.950836 TTGTTTGATGGACGCAGGTG 59.049 50.000 0.00 0.00 0.00 4.00
1354 1418 2.731691 GATGGACGCAGGTGTGTGGT 62.732 60.000 0.00 0.00 39.12 4.16
1375 1439 2.543777 TGTGGTTGCTGTTCTAGGAC 57.456 50.000 0.00 0.00 0.00 3.85
1378 1442 1.019805 GGTTGCTGTTCTAGGACGCC 61.020 60.000 13.22 0.75 0.00 5.68
1396 1460 0.740737 CCGGTTTCTTGATGGATGGC 59.259 55.000 0.00 0.00 0.00 4.40
1417 1481 2.295885 CATTCCTGTGATCTTGGGAGC 58.704 52.381 0.00 0.00 0.00 4.70
1423 1487 2.892425 GATCTTGGGAGCGTGCCG 60.892 66.667 0.00 0.00 0.00 5.69
1448 1512 2.475466 GCATCTGATGGTGCGGGTG 61.475 63.158 18.60 0.00 0.00 4.61
1456 1520 4.021925 GGTGCGGGTGCCTCTTCT 62.022 66.667 0.00 0.00 41.78 2.85
1508 1572 0.833287 GAAGCAGTCTGCCCTGGATA 59.167 55.000 21.32 0.00 46.52 2.59
1517 1581 1.369321 GCCCTGGATAGAGCTTCGG 59.631 63.158 0.00 0.00 0.00 4.30
1519 1583 0.470080 CCCTGGATAGAGCTTCGGGA 60.470 60.000 0.00 0.00 31.85 5.14
1534 1598 2.308722 GGGACAGGGGGAGAATGCA 61.309 63.158 0.00 0.00 0.00 3.96
1544 1608 2.686915 GGGGAGAATGCAGATTGTTCAG 59.313 50.000 0.00 0.00 0.00 3.02
1564 1628 1.303561 GGAGGCTGGAATGTGTGCA 60.304 57.895 0.00 0.00 0.00 4.57
1577 1641 0.312102 GTGTGCAGGTTTCTCCAAGC 59.688 55.000 0.00 0.00 39.08 4.01
1581 1645 1.073199 CAGGTTTCTCCAAGCCGGT 59.927 57.895 1.90 0.00 37.94 5.28
1582 1646 0.537371 CAGGTTTCTCCAAGCCGGTT 60.537 55.000 1.90 0.00 37.94 4.44
1600 1664 1.341209 GTTGGCTTGGGGTTGAAGAAG 59.659 52.381 0.00 0.00 0.00 2.85
1637 1701 3.806591 ACGTTTCCGTCATCGTCAT 57.193 47.368 0.00 0.00 46.28 3.06
1638 1702 1.625616 ACGTTTCCGTCATCGTCATC 58.374 50.000 0.00 0.00 46.28 2.92
1644 1708 2.580470 CGTCATCGTCATCTGCCGC 61.580 63.158 0.00 0.00 0.00 6.53
1675 1739 0.463204 CGGAGGACTCATGCTGTGAT 59.537 55.000 1.32 0.00 35.97 3.06
1678 1742 0.107312 AGGACTCATGCTGTGATGCC 60.107 55.000 0.00 0.00 35.97 4.40
1679 1743 1.434622 GGACTCATGCTGTGATGCCG 61.435 60.000 0.00 0.00 35.97 5.69
1680 1744 0.460811 GACTCATGCTGTGATGCCGA 60.461 55.000 0.00 0.00 35.97 5.54
1782 1855 5.860941 TTTGCCAAAAGATCCACAAGTAA 57.139 34.783 0.00 0.00 0.00 2.24
1811 1884 6.174720 TGCTTTCGATCCATTTCCTACTAT 57.825 37.500 0.00 0.00 0.00 2.12
1812 1885 7.297936 TGCTTTCGATCCATTTCCTACTATA 57.702 36.000 0.00 0.00 0.00 1.31
1813 1886 7.152645 TGCTTTCGATCCATTTCCTACTATAC 58.847 38.462 0.00 0.00 0.00 1.47
1884 1957 9.128404 TGATCATGATTTTAAAATCTAGCAGCT 57.872 29.630 31.05 15.53 43.97 4.24
1926 2196 8.023021 AGGTAATGATATGCTGAACTACTGAA 57.977 34.615 0.00 0.00 0.00 3.02
1939 2215 6.464222 TGAACTACTGAAACAACTATCCAGG 58.536 40.000 0.00 0.00 0.00 4.45
1944 2220 5.941788 ACTGAAACAACTATCCAGGTTTCT 58.058 37.500 14.72 0.00 45.66 2.52
1974 2250 3.507162 TCACATTCTTTGGAGGCTCAA 57.493 42.857 17.69 0.76 0.00 3.02
1975 2251 3.415212 TCACATTCTTTGGAGGCTCAAG 58.585 45.455 17.69 12.23 0.00 3.02
1976 2252 2.490903 CACATTCTTTGGAGGCTCAAGG 59.509 50.000 17.69 9.29 0.00 3.61
1977 2253 1.475682 CATTCTTTGGAGGCTCAAGGC 59.524 52.381 17.69 0.00 41.43 4.35
1988 2264 3.978718 GGCTCAAGGCTTAATGCTTAG 57.021 47.619 0.00 0.00 42.39 2.18
1989 2265 2.620585 GGCTCAAGGCTTAATGCTTAGG 59.379 50.000 0.00 0.00 42.39 2.69
1990 2266 2.620585 GCTCAAGGCTTAATGCTTAGGG 59.379 50.000 0.00 0.00 42.39 3.53
1994 2275 5.518865 TCAAGGCTTAATGCTTAGGGATTT 58.481 37.500 0.00 0.00 42.39 2.17
2001 2282 8.951243 GGCTTAATGCTTAGGGATTTATAAGAG 58.049 37.037 0.00 0.00 42.39 2.85
2009 2290 9.343539 GCTTAGGGATTTATAAGAGTGTTGATT 57.656 33.333 0.00 0.00 31.87 2.57
2027 2308 9.423061 GTGTTGATTAATTTATGGCTTCTTTGT 57.577 29.630 0.00 0.00 0.00 2.83
2228 2516 4.277174 TGACCTGCATAAATCGTTGTGTTT 59.723 37.500 0.00 0.00 0.00 2.83
2397 2685 0.729116 CATGTGCTCCATGGAACGTC 59.271 55.000 17.00 9.28 46.03 4.34
2462 2761 4.453136 TGCGTAATGAGGAAACTAACCAAC 59.547 41.667 0.00 0.00 44.43 3.77
2790 3089 2.334977 TCTCCTGCTGTTAACTTCCCA 58.665 47.619 7.22 0.00 0.00 4.37
2792 3091 1.771854 TCCTGCTGTTAACTTCCCACA 59.228 47.619 7.22 0.00 0.00 4.17
2833 3132 2.172505 TGTTGATCTGTGGACCTTGTGT 59.827 45.455 0.00 0.00 0.00 3.72
2836 3135 3.897239 TGATCTGTGGACCTTGTGTTTT 58.103 40.909 0.00 0.00 0.00 2.43
2871 3170 0.323360 TTGGCACCTCCATTGGTAGC 60.323 55.000 1.86 3.10 46.04 3.58
2879 3178 2.589540 CATTGGTAGCGAGGCCCA 59.410 61.111 0.00 0.00 0.00 5.36
2939 3238 1.378250 GCATCAGCAGCCAAGAGGT 60.378 57.895 0.00 0.00 41.58 3.85
2951 3250 1.200020 CCAAGAGGTGAAATGCGGAAC 59.800 52.381 0.00 0.00 0.00 3.62
3092 3413 3.455849 TGTTATCACCATGTACCTCCCA 58.544 45.455 0.00 0.00 0.00 4.37
3161 3491 4.732784 GCAATCGCTTGAATTTTGGACTA 58.267 39.130 2.58 0.00 34.04 2.59
3166 3496 5.757886 TCGCTTGAATTTTGGACTAGTTTG 58.242 37.500 0.00 0.00 0.00 2.93
3234 3564 6.163476 TCTATTACTACACAACAGTTGCTGG 58.837 40.000 13.56 5.98 35.51 4.85
3247 3577 5.560724 ACAGTTGCTGGCTTATCTAAAGAA 58.439 37.500 1.08 0.00 35.51 2.52
3363 3693 0.031817 CCCCTGCCCAATCCATCTTT 60.032 55.000 0.00 0.00 0.00 2.52
3457 3787 4.870636 TCATCCCCATGAAACTTAGCATT 58.129 39.130 0.00 0.00 35.99 3.56
3522 3859 2.233431 ACTCCTGTCAGTGAGATGCTTC 59.767 50.000 19.34 0.00 32.84 3.86
3539 3876 7.436118 AGATGCTTCTTTTGCAAAATCAGTTA 58.564 30.769 24.06 15.13 44.01 2.24
3574 3911 3.518705 AGAGGATGAGGCATGCTAATAGG 59.481 47.826 18.92 0.00 42.36 2.57
3628 3965 3.213206 TGCATAATAAGCCTCAGTGGG 57.787 47.619 0.00 0.00 36.00 4.61
3717 4086 4.597004 ACCATGAAGATGCAACTGATCTT 58.403 39.130 0.00 0.00 41.83 2.40
3718 4087 5.748402 ACCATGAAGATGCAACTGATCTTA 58.252 37.500 0.00 0.00 39.72 2.10
3719 4088 5.821470 ACCATGAAGATGCAACTGATCTTAG 59.179 40.000 0.00 0.00 39.72 2.18
3720 4089 5.277876 CCATGAAGATGCAACTGATCTTAGC 60.278 44.000 0.00 0.00 39.72 3.09
3721 4090 4.835678 TGAAGATGCAACTGATCTTAGCA 58.164 39.130 0.00 0.00 39.72 3.49
3722 4091 4.874396 TGAAGATGCAACTGATCTTAGCAG 59.126 41.667 0.00 0.00 39.72 4.24
3723 4092 3.806380 AGATGCAACTGATCTTAGCAGG 58.194 45.455 0.00 0.00 38.75 4.85
3724 4093 3.199508 AGATGCAACTGATCTTAGCAGGT 59.800 43.478 0.00 0.00 38.75 4.00
3725 4094 4.406972 AGATGCAACTGATCTTAGCAGGTA 59.593 41.667 0.00 0.00 38.75 3.08
3726 4095 4.551702 TGCAACTGATCTTAGCAGGTAA 57.448 40.909 0.00 0.00 37.69 2.85
3727 4096 4.507710 TGCAACTGATCTTAGCAGGTAAG 58.492 43.478 12.51 12.51 39.80 2.34
3734 4103 2.478292 TCTTAGCAGGTAAGAAGGGGG 58.522 52.381 17.98 0.00 43.56 5.40
3785 4154 2.665649 AGGATACATTTGTCGTCGCA 57.334 45.000 0.00 0.00 41.41 5.10
3793 4162 1.149361 TTTGTCGTCGCACCAGTCAC 61.149 55.000 0.00 0.00 0.00 3.67
3927 4297 1.394917 CTTAAGGTAAGCAGCAGCACG 59.605 52.381 3.17 0.00 45.49 5.34
4133 4503 2.867368 CGGTTGTTACTACACAGTTGCA 59.133 45.455 0.00 0.00 36.14 4.08
4348 4718 5.935945 TCCACAACAACCATCTTCTTCTTA 58.064 37.500 0.00 0.00 0.00 2.10
4438 4808 3.321648 TCGTCCACAGCCATGCCT 61.322 61.111 0.00 0.00 0.00 4.75
4471 4841 0.727398 CCTACAGTAAAAGCGCAGGC 59.273 55.000 11.47 0.00 40.37 4.85
4479 4849 1.866853 AAAAGCGCAGGCCAGTTAGC 61.867 55.000 11.47 4.81 41.24 3.09
4492 4862 4.962155 GCCAGTTAGCCATGATACTAAGT 58.038 43.478 0.00 0.00 33.32 2.24
4516 4891 5.931441 ATCACTCTTTCTGCACTTGTAAC 57.069 39.130 0.00 0.00 0.00 2.50
4518 4893 4.811024 TCACTCTTTCTGCACTTGTAACAG 59.189 41.667 0.00 0.00 0.00 3.16
4523 4898 5.983720 TCTTTCTGCACTTGTAACAGAGTAC 59.016 40.000 0.00 0.00 41.21 2.73
4524 4899 4.929819 TCTGCACTTGTAACAGAGTACA 57.070 40.909 0.00 0.00 35.58 2.90
4525 4900 5.468540 TCTGCACTTGTAACAGAGTACAT 57.531 39.130 0.00 0.00 35.58 2.29
4527 4902 5.243954 TCTGCACTTGTAACAGAGTACATCT 59.756 40.000 0.00 0.00 39.56 2.90
4549 4928 6.778821 TCTGGAAGAAATGTTATGAGGACAA 58.221 36.000 0.00 0.00 42.31 3.18
4594 4973 4.764308 TGCAACATGGCAACTACAATTAGA 59.236 37.500 0.00 0.00 41.65 2.10
4660 5039 0.713883 CAATCGTCTGAACCGAACCG 59.286 55.000 0.00 0.00 37.93 4.44
4667 5046 3.000727 GTCTGAACCGAACCGATTCATT 58.999 45.455 0.00 0.00 34.14 2.57
4671 5050 1.086696 ACCGAACCGATTCATTGCAG 58.913 50.000 0.00 0.00 34.14 4.41
4717 5096 2.034879 CGCAAACGCCTGTCAGGAT 61.035 57.895 23.77 6.67 37.67 3.24
4765 5144 3.189287 CACTAAATGGGACTGTTCAGTGC 59.811 47.826 14.45 14.45 0.00 4.40
4766 5145 1.238439 AAATGGGACTGTTCAGTGCG 58.762 50.000 15.84 0.00 0.00 5.34
4783 5162 1.668294 CGTCTGAACCTCAGCTGGT 59.332 57.895 15.13 0.92 43.95 4.00
4842 5221 3.359033 CAGGTCCACATCCAACAATGAT 58.641 45.455 0.00 0.00 0.00 2.45
4849 5228 7.143340 GTCCACATCCAACAATGATATGATTG 58.857 38.462 12.69 12.69 38.97 2.67
4870 5249 4.733850 TGCAGATAACAGAGTGTAGAACG 58.266 43.478 0.00 0.00 0.00 3.95
4897 5278 5.191727 TGACCAAGGACCATAAATCATGT 57.808 39.130 0.00 0.00 32.21 3.21
4901 5282 5.418840 ACCAAGGACCATAAATCATGTTGAC 59.581 40.000 0.00 0.00 32.21 3.18
4922 5303 3.826236 GCTCAATGCGCAAGATATCAT 57.174 42.857 17.11 0.00 43.02 2.45
4923 5304 4.156664 GCTCAATGCGCAAGATATCATT 57.843 40.909 17.11 0.00 43.02 2.57
4924 5305 3.912563 GCTCAATGCGCAAGATATCATTG 59.087 43.478 17.11 12.24 44.12 2.82
4925 5306 4.556104 GCTCAATGCGCAAGATATCATTGT 60.556 41.667 17.11 0.00 43.56 2.71
4926 5307 5.503662 TCAATGCGCAAGATATCATTGTT 57.496 34.783 17.11 0.00 43.56 2.83
4927 5308 5.893687 TCAATGCGCAAGATATCATTGTTT 58.106 33.333 17.11 0.00 43.56 2.83
4928 5309 5.744819 TCAATGCGCAAGATATCATTGTTTG 59.255 36.000 17.11 9.81 43.56 2.93
4929 5310 4.961435 TGCGCAAGATATCATTGTTTGA 57.039 36.364 8.16 0.00 43.02 2.69
4930 5311 4.912214 TGCGCAAGATATCATTGTTTGAG 58.088 39.130 8.16 3.54 37.36 3.02
4931 5312 3.727723 GCGCAAGATATCATTGTTTGAGC 59.272 43.478 0.30 12.28 37.36 4.26
4932 5313 4.497006 GCGCAAGATATCATTGTTTGAGCT 60.497 41.667 17.35 0.00 40.07 4.09
4933 5314 5.575957 CGCAAGATATCATTGTTTGAGCTT 58.424 37.500 5.32 0.00 37.36 3.74
4934 5315 5.454554 CGCAAGATATCATTGTTTGAGCTTG 59.545 40.000 5.32 0.00 40.84 4.01
4935 5316 6.807708 CAAGATATCATTGTTTGAGCTTGC 57.192 37.500 5.32 0.00 37.89 4.01
4936 5317 6.327154 CAAGATATCATTGTTTGAGCTTGCA 58.673 36.000 5.32 0.00 37.89 4.08
4937 5318 6.710597 AGATATCATTGTTTGAGCTTGCAT 57.289 33.333 5.32 0.00 37.89 3.96
4938 5319 6.736123 AGATATCATTGTTTGAGCTTGCATC 58.264 36.000 5.32 0.00 37.89 3.91
4939 5320 6.546403 AGATATCATTGTTTGAGCTTGCATCT 59.454 34.615 5.32 0.00 37.89 2.90
4940 5321 4.859304 TCATTGTTTGAGCTTGCATCTT 57.141 36.364 0.00 0.00 0.00 2.40
4941 5322 4.552355 TCATTGTTTGAGCTTGCATCTTG 58.448 39.130 0.00 0.00 0.00 3.02
4942 5323 2.427232 TGTTTGAGCTTGCATCTTGC 57.573 45.000 0.00 0.00 45.29 4.01
4943 5324 1.958579 TGTTTGAGCTTGCATCTTGCT 59.041 42.857 0.75 4.15 45.31 3.91
4948 5329 2.941453 AGCTTGCATCTTGCTCAATG 57.059 45.000 0.75 0.00 45.31 2.82
4949 5330 1.135083 AGCTTGCATCTTGCTCAATGC 60.135 47.619 9.80 9.80 45.31 3.56
4951 5332 3.993103 GCATCTTGCTCAATGCGC 58.007 55.556 0.00 0.00 46.63 6.09
4952 5333 1.138036 GCATCTTGCTCAATGCGCA 59.862 52.632 14.96 14.96 46.63 6.09
4953 5334 0.457166 GCATCTTGCTCAATGCGCAA 60.457 50.000 17.11 10.35 46.63 4.85
4957 5338 3.477504 TTGCTCAATGCGCAAGAAC 57.522 47.368 17.11 11.94 46.63 3.01
4958 5339 0.953727 TTGCTCAATGCGCAAGAACT 59.046 45.000 17.11 0.00 46.63 3.01
4959 5340 0.953727 TGCTCAATGCGCAAGAACTT 59.046 45.000 17.11 0.00 46.63 2.66
4960 5341 1.334054 GCTCAATGCGCAAGAACTTG 58.666 50.000 17.11 14.71 43.14 3.16
4961 5342 1.069022 GCTCAATGCGCAAGAACTTGA 60.069 47.619 17.11 18.44 42.93 3.02
4962 5343 2.847901 CTCAATGCGCAAGAACTTGAG 58.152 47.619 27.03 27.03 42.93 3.02
4972 5353 4.500603 CAAGAACTTGAGCTTGCATCTT 57.499 40.909 8.65 0.00 42.93 2.40
4973 5354 4.474113 CAAGAACTTGAGCTTGCATCTTC 58.526 43.478 8.65 0.00 42.93 2.87
4974 5355 2.740981 AGAACTTGAGCTTGCATCTTCG 59.259 45.455 0.00 0.00 0.00 3.79
4975 5356 2.175878 ACTTGAGCTTGCATCTTCGT 57.824 45.000 0.00 0.00 0.00 3.85
4976 5357 2.072298 ACTTGAGCTTGCATCTTCGTC 58.928 47.619 0.00 0.00 0.00 4.20
4977 5358 2.289320 ACTTGAGCTTGCATCTTCGTCT 60.289 45.455 0.00 0.00 0.00 4.18
4978 5359 1.718396 TGAGCTTGCATCTTCGTCTG 58.282 50.000 0.00 0.00 0.00 3.51
4979 5360 1.273327 TGAGCTTGCATCTTCGTCTGA 59.727 47.619 0.00 0.00 0.00 3.27
4980 5361 2.289010 TGAGCTTGCATCTTCGTCTGAA 60.289 45.455 0.00 0.00 0.00 3.02
4981 5362 2.738846 GAGCTTGCATCTTCGTCTGAAA 59.261 45.455 0.00 0.00 32.66 2.69
4982 5363 3.341823 AGCTTGCATCTTCGTCTGAAAT 58.658 40.909 0.00 0.00 32.66 2.17
4983 5364 4.507710 AGCTTGCATCTTCGTCTGAAATA 58.492 39.130 0.00 0.00 32.66 1.40
4984 5365 4.937620 AGCTTGCATCTTCGTCTGAAATAA 59.062 37.500 0.00 0.00 32.66 1.40
4985 5366 5.587844 AGCTTGCATCTTCGTCTGAAATAAT 59.412 36.000 0.00 0.00 32.66 1.28
4986 5367 5.906285 GCTTGCATCTTCGTCTGAAATAATC 59.094 40.000 0.00 0.00 32.66 1.75
4987 5368 6.238320 GCTTGCATCTTCGTCTGAAATAATCT 60.238 38.462 0.00 0.00 32.66 2.40
4988 5369 6.834959 TGCATCTTCGTCTGAAATAATCTC 57.165 37.500 0.00 0.00 32.66 2.75
4989 5370 5.460091 TGCATCTTCGTCTGAAATAATCTCG 59.540 40.000 0.00 0.00 32.66 4.04
4990 5371 5.107683 GCATCTTCGTCTGAAATAATCTCGG 60.108 44.000 0.00 0.00 32.66 4.63
4991 5372 5.578005 TCTTCGTCTGAAATAATCTCGGT 57.422 39.130 0.00 0.00 32.66 4.69
4992 5373 5.962433 TCTTCGTCTGAAATAATCTCGGTT 58.038 37.500 0.00 0.00 32.66 4.44
4993 5374 6.034591 TCTTCGTCTGAAATAATCTCGGTTC 58.965 40.000 0.00 0.00 32.66 3.62
4994 5375 5.319140 TCGTCTGAAATAATCTCGGTTCA 57.681 39.130 0.00 0.00 0.00 3.18
4995 5376 5.902681 TCGTCTGAAATAATCTCGGTTCAT 58.097 37.500 0.00 0.00 30.06 2.57
4996 5377 6.338146 TCGTCTGAAATAATCTCGGTTCATT 58.662 36.000 0.00 0.00 30.06 2.57
4997 5378 6.255670 TCGTCTGAAATAATCTCGGTTCATTG 59.744 38.462 0.00 0.00 30.06 2.82
4998 5379 6.036083 CGTCTGAAATAATCTCGGTTCATTGT 59.964 38.462 0.00 0.00 30.06 2.71
4999 5380 7.413000 CGTCTGAAATAATCTCGGTTCATTGTT 60.413 37.037 0.00 0.00 30.06 2.83
5000 5381 8.237267 GTCTGAAATAATCTCGGTTCATTGTTT 58.763 33.333 0.00 0.00 30.06 2.83
5001 5382 8.792633 TCTGAAATAATCTCGGTTCATTGTTTT 58.207 29.630 0.00 0.00 30.06 2.43
5002 5383 8.964420 TGAAATAATCTCGGTTCATTGTTTTC 57.036 30.769 0.00 0.00 0.00 2.29
5003 5384 8.792633 TGAAATAATCTCGGTTCATTGTTTTCT 58.207 29.630 0.00 0.00 0.00 2.52
5004 5385 9.626045 GAAATAATCTCGGTTCATTGTTTTCTT 57.374 29.630 0.00 0.00 0.00 2.52
5005 5386 9.981114 AAATAATCTCGGTTCATTGTTTTCTTT 57.019 25.926 0.00 0.00 0.00 2.52
5006 5387 9.981114 AATAATCTCGGTTCATTGTTTTCTTTT 57.019 25.926 0.00 0.00 0.00 2.27
5007 5388 9.981114 ATAATCTCGGTTCATTGTTTTCTTTTT 57.019 25.926 0.00 0.00 0.00 1.94
5008 5389 7.930513 ATCTCGGTTCATTGTTTTCTTTTTC 57.069 32.000 0.00 0.00 0.00 2.29
5009 5390 6.270064 TCTCGGTTCATTGTTTTCTTTTTCC 58.730 36.000 0.00 0.00 0.00 3.13
5010 5391 6.096282 TCTCGGTTCATTGTTTTCTTTTTCCT 59.904 34.615 0.00 0.00 0.00 3.36
5011 5392 6.635755 TCGGTTCATTGTTTTCTTTTTCCTT 58.364 32.000 0.00 0.00 0.00 3.36
5012 5393 7.100409 TCGGTTCATTGTTTTCTTTTTCCTTT 58.900 30.769 0.00 0.00 0.00 3.11
5013 5394 7.604545 TCGGTTCATTGTTTTCTTTTTCCTTTT 59.395 29.630 0.00 0.00 0.00 2.27
5014 5395 7.902917 CGGTTCATTGTTTTCTTTTTCCTTTTC 59.097 33.333 0.00 0.00 0.00 2.29
5015 5396 8.726068 GGTTCATTGTTTTCTTTTTCCTTTTCA 58.274 29.630 0.00 0.00 0.00 2.69
5030 5411 3.381045 CTTTTCAAAAAGGAAGGTCGCC 58.619 45.455 7.24 0.00 41.23 5.54
5031 5412 2.060050 TTCAAAAAGGAAGGTCGCCA 57.940 45.000 0.00 0.00 0.00 5.69
5032 5413 2.286365 TCAAAAAGGAAGGTCGCCAT 57.714 45.000 0.00 0.00 0.00 4.40
5033 5414 2.593026 TCAAAAAGGAAGGTCGCCATT 58.407 42.857 0.00 0.00 0.00 3.16
5034 5415 2.556622 TCAAAAAGGAAGGTCGCCATTC 59.443 45.455 0.00 0.00 0.00 2.67
5035 5416 1.545841 AAAAGGAAGGTCGCCATTCC 58.454 50.000 0.80 0.80 44.49 3.01
5038 5419 2.482326 GGAAGGTCGCCATTCCTTG 58.518 57.895 2.06 0.00 43.12 3.61
5039 5420 0.322546 GGAAGGTCGCCATTCCTTGT 60.323 55.000 2.06 0.00 43.12 3.16
5040 5421 1.065709 GGAAGGTCGCCATTCCTTGTA 60.066 52.381 2.06 0.00 43.12 2.41
5041 5422 2.280628 GAAGGTCGCCATTCCTTGTAG 58.719 52.381 1.04 0.00 43.12 2.74
5042 5423 0.541863 AGGTCGCCATTCCTTGTAGG 59.458 55.000 0.00 0.00 36.46 3.18
5043 5424 0.463833 GGTCGCCATTCCTTGTAGGG 60.464 60.000 0.00 0.00 35.59 3.53
5044 5425 0.539986 GTCGCCATTCCTTGTAGGGA 59.460 55.000 0.00 0.00 35.59 4.20
5046 5427 1.209504 TCGCCATTCCTTGTAGGGAAG 59.790 52.381 1.91 0.00 46.81 3.46
5047 5428 1.393603 GCCATTCCTTGTAGGGAAGC 58.606 55.000 1.91 0.00 46.81 3.86
5048 5429 1.340991 GCCATTCCTTGTAGGGAAGCA 60.341 52.381 1.91 0.00 46.81 3.91
5049 5430 2.883888 GCCATTCCTTGTAGGGAAGCAA 60.884 50.000 1.91 0.00 46.81 3.91
5050 5431 2.755103 CCATTCCTTGTAGGGAAGCAAC 59.245 50.000 1.91 0.00 46.81 4.17
5051 5432 3.562176 CCATTCCTTGTAGGGAAGCAACT 60.562 47.826 1.91 0.00 46.81 3.16
5052 5433 4.324254 CCATTCCTTGTAGGGAAGCAACTA 60.324 45.833 1.91 0.00 46.81 2.24
5053 5434 3.975168 TCCTTGTAGGGAAGCAACTAC 57.025 47.619 0.00 0.00 39.91 2.73
5054 5435 2.232941 TCCTTGTAGGGAAGCAACTACG 59.767 50.000 0.00 0.00 41.84 3.51
5055 5436 2.232941 CCTTGTAGGGAAGCAACTACGA 59.767 50.000 0.00 0.00 41.84 3.43
5056 5437 3.512680 CTTGTAGGGAAGCAACTACGAG 58.487 50.000 0.00 0.00 42.26 4.18
5057 5438 1.203994 TGTAGGGAAGCAACTACGAGC 59.796 52.381 0.00 0.00 41.84 5.03
5058 5439 1.203994 GTAGGGAAGCAACTACGAGCA 59.796 52.381 0.00 0.00 31.34 4.26
5059 5440 0.037232 AGGGAAGCAACTACGAGCAC 60.037 55.000 0.00 0.00 0.00 4.40
5060 5441 0.037232 GGGAAGCAACTACGAGCACT 60.037 55.000 0.00 0.00 0.00 4.40
5061 5442 1.203994 GGGAAGCAACTACGAGCACTA 59.796 52.381 0.00 0.00 0.00 2.74
5062 5443 2.353406 GGGAAGCAACTACGAGCACTAA 60.353 50.000 0.00 0.00 0.00 2.24
5063 5444 3.522553 GGAAGCAACTACGAGCACTAAT 58.477 45.455 0.00 0.00 0.00 1.73
5064 5445 3.307242 GGAAGCAACTACGAGCACTAATG 59.693 47.826 0.00 0.00 0.00 1.90
5065 5446 3.594603 AGCAACTACGAGCACTAATGT 57.405 42.857 0.00 0.00 0.00 2.71
5066 5447 3.254060 AGCAACTACGAGCACTAATGTG 58.746 45.455 0.00 0.00 46.37 3.21
5079 5460 4.916870 CACTAATGTGCATCATGGAGTTG 58.083 43.478 0.00 0.00 37.38 3.16
5080 5461 4.397103 CACTAATGTGCATCATGGAGTTGT 59.603 41.667 0.00 0.00 37.38 3.32
5081 5462 4.637534 ACTAATGTGCATCATGGAGTTGTC 59.362 41.667 0.00 0.00 36.81 3.18
5082 5463 1.441738 TGTGCATCATGGAGTTGTCG 58.558 50.000 0.00 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 3.720601 TACCTGGGCTGCAGGCTG 61.721 66.667 35.64 27.27 43.42 4.85
12 13 3.721706 GTACCTGGGCTGCAGGCT 61.722 66.667 35.64 20.88 43.42 4.58
14 15 4.473520 CCGTACCTGGGCTGCAGG 62.474 72.222 17.12 8.10 45.06 4.85
24 25 0.756442 TTAGCATACGGGCCGTACCT 60.756 55.000 38.40 34.00 45.07 3.08
25 26 0.319405 ATTAGCATACGGGCCGTACC 59.681 55.000 38.40 29.95 45.07 3.34
26 27 1.706443 GATTAGCATACGGGCCGTAC 58.294 55.000 38.40 26.77 45.07 3.67
27 28 0.241749 CGATTAGCATACGGGCCGTA 59.758 55.000 37.76 37.76 46.28 4.02
28 29 1.006571 CGATTAGCATACGGGCCGT 60.007 57.895 35.91 35.91 44.35 5.68
29 30 1.736645 CCGATTAGCATACGGGCCG 60.737 63.158 27.06 27.06 42.48 6.13
30 31 4.278956 CCGATTAGCATACGGGCC 57.721 61.111 0.00 0.00 42.48 5.80
33 34 1.736645 CGGCCCGATTAGCATACGG 60.737 63.158 0.00 0.00 45.24 4.02
34 35 1.736645 CCGGCCCGATTAGCATACG 60.737 63.158 3.71 0.00 0.00 3.06
35 36 2.033194 GCCGGCCCGATTAGCATAC 61.033 63.158 18.11 0.00 0.00 2.39
36 37 2.345991 GCCGGCCCGATTAGCATA 59.654 61.111 18.11 0.00 0.00 3.14
37 38 4.643387 GGCCGGCCCGATTAGCAT 62.643 66.667 36.64 0.00 0.00 3.79
52 53 0.108774 GGTAGATTAGTGGGCTGGGC 59.891 60.000 0.00 0.00 0.00 5.36
53 54 1.694696 GAGGTAGATTAGTGGGCTGGG 59.305 57.143 0.00 0.00 0.00 4.45
54 55 1.694696 GGAGGTAGATTAGTGGGCTGG 59.305 57.143 0.00 0.00 0.00 4.85
55 56 2.683768 AGGAGGTAGATTAGTGGGCTG 58.316 52.381 0.00 0.00 0.00 4.85
56 57 4.768807 ATAGGAGGTAGATTAGTGGGCT 57.231 45.455 0.00 0.00 0.00 5.19
57 58 5.827326 AAATAGGAGGTAGATTAGTGGGC 57.173 43.478 0.00 0.00 0.00 5.36
58 59 5.998363 GCAAAATAGGAGGTAGATTAGTGGG 59.002 44.000 0.00 0.00 0.00 4.61
59 60 5.696724 CGCAAAATAGGAGGTAGATTAGTGG 59.303 44.000 0.00 0.00 0.00 4.00
60 61 5.177696 GCGCAAAATAGGAGGTAGATTAGTG 59.822 44.000 0.30 0.00 0.00 2.74
61 62 5.163343 TGCGCAAAATAGGAGGTAGATTAGT 60.163 40.000 8.16 0.00 0.00 2.24
62 63 5.297547 TGCGCAAAATAGGAGGTAGATTAG 58.702 41.667 8.16 0.00 0.00 1.73
63 64 5.284861 TGCGCAAAATAGGAGGTAGATTA 57.715 39.130 8.16 0.00 0.00 1.75
64 65 4.150897 TGCGCAAAATAGGAGGTAGATT 57.849 40.909 8.16 0.00 0.00 2.40
65 66 3.838244 TGCGCAAAATAGGAGGTAGAT 57.162 42.857 8.16 0.00 0.00 1.98
66 67 3.838244 ATGCGCAAAATAGGAGGTAGA 57.162 42.857 17.11 0.00 0.00 2.59
67 68 3.876914 TCAATGCGCAAAATAGGAGGTAG 59.123 43.478 17.11 0.00 0.00 3.18
68 69 3.876914 CTCAATGCGCAAAATAGGAGGTA 59.123 43.478 17.11 0.00 0.00 3.08
69 70 2.684881 CTCAATGCGCAAAATAGGAGGT 59.315 45.455 17.11 0.00 0.00 3.85
70 71 2.542411 GCTCAATGCGCAAAATAGGAGG 60.542 50.000 17.11 0.00 0.00 4.30
71 72 2.724349 GCTCAATGCGCAAAATAGGAG 58.276 47.619 17.11 15.51 0.00 3.69
72 73 2.849880 GCTCAATGCGCAAAATAGGA 57.150 45.000 17.11 5.01 0.00 2.94
94 95 7.156000 GCCAACAGGTAAAAATAGGCTAAAAA 58.844 34.615 0.00 0.00 37.89 1.94
95 96 6.295405 GGCCAACAGGTAAAAATAGGCTAAAA 60.295 38.462 0.00 0.00 40.61 1.52
96 97 5.186215 GGCCAACAGGTAAAAATAGGCTAAA 59.814 40.000 0.00 0.00 40.61 1.85
97 98 4.707934 GGCCAACAGGTAAAAATAGGCTAA 59.292 41.667 0.00 0.00 40.61 3.09
98 99 4.274978 GGCCAACAGGTAAAAATAGGCTA 58.725 43.478 0.00 0.00 40.61 3.93
99 100 3.096852 GGCCAACAGGTAAAAATAGGCT 58.903 45.455 0.00 0.00 40.61 4.58
100 101 2.167693 GGGCCAACAGGTAAAAATAGGC 59.832 50.000 4.39 0.00 40.08 3.93
101 102 3.436243 TGGGCCAACAGGTAAAAATAGG 58.564 45.455 2.13 0.00 0.00 2.57
102 103 6.976934 ATATGGGCCAACAGGTAAAAATAG 57.023 37.500 11.89 0.00 0.00 1.73
103 104 8.282982 TCTAATATGGGCCAACAGGTAAAAATA 58.717 33.333 11.89 0.00 0.00 1.40
104 105 7.129425 TCTAATATGGGCCAACAGGTAAAAAT 58.871 34.615 11.89 0.00 0.00 1.82
105 106 6.494952 TCTAATATGGGCCAACAGGTAAAAA 58.505 36.000 11.89 0.00 0.00 1.94
106 107 6.080969 TCTAATATGGGCCAACAGGTAAAA 57.919 37.500 11.89 0.00 0.00 1.52
107 108 5.718801 TCTAATATGGGCCAACAGGTAAA 57.281 39.130 11.89 0.00 0.00 2.01
108 109 5.718801 TTCTAATATGGGCCAACAGGTAA 57.281 39.130 11.89 0.00 0.00 2.85
109 110 5.922960 ATTCTAATATGGGCCAACAGGTA 57.077 39.130 11.89 0.00 0.00 3.08
110 111 4.814224 ATTCTAATATGGGCCAACAGGT 57.186 40.909 11.89 0.00 0.00 4.00
111 112 5.630121 TGTATTCTAATATGGGCCAACAGG 58.370 41.667 11.89 0.00 0.00 4.00
112 113 8.862325 TTATGTATTCTAATATGGGCCAACAG 57.138 34.615 11.89 5.47 0.00 3.16
113 114 9.647918 TTTTATGTATTCTAATATGGGCCAACA 57.352 29.630 11.89 7.42 0.00 3.33
148 149 1.068125 GCACGGCCCGATTAACTTTTT 60.068 47.619 11.71 0.00 0.00 1.94
149 150 0.524414 GCACGGCCCGATTAACTTTT 59.476 50.000 11.71 0.00 0.00 2.27
150 151 1.310216 GGCACGGCCCGATTAACTTT 61.310 55.000 11.71 0.00 44.06 2.66
151 152 1.747745 GGCACGGCCCGATTAACTT 60.748 57.895 11.71 0.00 44.06 2.66
152 153 2.124860 GGCACGGCCCGATTAACT 60.125 61.111 11.71 0.00 44.06 2.24
189 190 4.748144 GTGCCTGGGCCTGAAGGG 62.748 72.222 12.58 4.03 41.09 3.95
231 232 3.440415 GTGCTAAACGGGCCAGGC 61.440 66.667 8.08 1.26 0.00 4.85
277 278 4.581093 GGGATAGTTGGGCCGGCC 62.581 72.222 38.57 38.57 0.00 6.13
278 279 4.929707 CGGGATAGTTGGGCCGGC 62.930 72.222 21.18 21.18 0.00 6.13
279 280 4.250305 CCGGGATAGTTGGGCCGG 62.250 72.222 0.00 0.00 34.60 6.13
280 281 4.929707 GCCGGGATAGTTGGGCCG 62.930 72.222 2.18 0.00 39.67 6.13
282 283 4.581093 GGGCCGGGATAGTTGGGC 62.581 72.222 2.18 0.00 46.84 5.36
283 284 4.250305 CGGGCCGGGATAGTTGGG 62.250 72.222 20.56 0.00 0.00 4.12
284 285 2.546114 AAACGGGCCGGGATAGTTGG 62.546 60.000 31.78 0.00 0.00 3.77
285 286 1.078001 AAACGGGCCGGGATAGTTG 60.078 57.895 31.78 0.00 0.00 3.16
286 287 1.078001 CAAACGGGCCGGGATAGTT 60.078 57.895 31.78 11.46 0.00 2.24
287 288 2.587889 CAAACGGGCCGGGATAGT 59.412 61.111 31.78 4.41 0.00 2.12
288 289 2.203153 CCAAACGGGCCGGGATAG 60.203 66.667 31.78 14.48 0.00 2.08
297 298 0.818040 GGTATAGCTGGCCAAACGGG 60.818 60.000 7.01 0.00 40.85 5.28
298 299 0.818040 GGGTATAGCTGGCCAAACGG 60.818 60.000 7.01 0.00 0.00 4.44
299 300 0.818040 GGGGTATAGCTGGCCAAACG 60.818 60.000 7.01 0.00 0.00 3.60
300 301 0.818040 CGGGGTATAGCTGGCCAAAC 60.818 60.000 7.01 1.16 0.00 2.93
301 302 1.529796 CGGGGTATAGCTGGCCAAA 59.470 57.895 7.01 0.00 0.00 3.28
302 303 2.448582 CCGGGGTATAGCTGGCCAA 61.449 63.158 7.01 0.00 0.00 4.52
303 304 2.847234 CCGGGGTATAGCTGGCCA 60.847 66.667 4.71 4.71 0.00 5.36
304 305 3.637273 CCCGGGGTATAGCTGGCC 61.637 72.222 14.71 0.00 0.00 5.36
305 306 3.637273 CCCCGGGGTATAGCTGGC 61.637 72.222 33.25 0.00 0.00 4.85
306 307 3.637273 GCCCCGGGGTATAGCTGG 61.637 72.222 39.80 12.52 37.65 4.85
307 308 4.003788 CGCCCCGGGGTATAGCTG 62.004 72.222 39.80 17.20 37.65 4.24
310 311 4.309950 GTGCGCCCCGGGGTATAG 62.310 72.222 39.80 27.62 37.65 1.31
337 338 4.947147 TGTGGTGGCCGGCTTGTC 62.947 66.667 28.56 10.32 0.00 3.18
362 363 2.192175 GCGGTGTGGATAAGGGGG 59.808 66.667 0.00 0.00 0.00 5.40
363 364 1.146263 GAGCGGTGTGGATAAGGGG 59.854 63.158 0.00 0.00 0.00 4.79
364 365 0.105039 GAGAGCGGTGTGGATAAGGG 59.895 60.000 0.00 0.00 0.00 3.95
365 366 0.105039 GGAGAGCGGTGTGGATAAGG 59.895 60.000 0.00 0.00 0.00 2.69
366 367 0.105039 GGGAGAGCGGTGTGGATAAG 59.895 60.000 0.00 0.00 0.00 1.73
367 368 0.325296 AGGGAGAGCGGTGTGGATAA 60.325 55.000 0.00 0.00 0.00 1.75
368 369 0.755698 GAGGGAGAGCGGTGTGGATA 60.756 60.000 0.00 0.00 0.00 2.59
369 370 2.039624 AGGGAGAGCGGTGTGGAT 59.960 61.111 0.00 0.00 0.00 3.41
370 371 2.680352 GAGGGAGAGCGGTGTGGA 60.680 66.667 0.00 0.00 0.00 4.02
371 372 2.997315 TGAGGGAGAGCGGTGTGG 60.997 66.667 0.00 0.00 0.00 4.17
372 373 2.219325 GAGTGAGGGAGAGCGGTGTG 62.219 65.000 0.00 0.00 0.00 3.82
373 374 1.979693 GAGTGAGGGAGAGCGGTGT 60.980 63.158 0.00 0.00 0.00 4.16
374 375 2.716017 GGAGTGAGGGAGAGCGGTG 61.716 68.421 0.00 0.00 0.00 4.94
375 376 2.363147 GGAGTGAGGGAGAGCGGT 60.363 66.667 0.00 0.00 0.00 5.68
376 377 3.151022 GGGAGTGAGGGAGAGCGG 61.151 72.222 0.00 0.00 0.00 5.52
377 378 3.151022 GGGGAGTGAGGGAGAGCG 61.151 72.222 0.00 0.00 0.00 5.03
378 379 2.766229 GGGGGAGTGAGGGAGAGC 60.766 72.222 0.00 0.00 0.00 4.09
379 380 1.075600 GAGGGGGAGTGAGGGAGAG 60.076 68.421 0.00 0.00 0.00 3.20
380 381 2.637640 GGAGGGGGAGTGAGGGAGA 61.638 68.421 0.00 0.00 0.00 3.71
381 382 2.041405 GGAGGGGGAGTGAGGGAG 60.041 72.222 0.00 0.00 0.00 4.30
382 383 4.075793 CGGAGGGGGAGTGAGGGA 62.076 72.222 0.00 0.00 0.00 4.20
387 388 3.976490 TAGTGGCGGAGGGGGAGTG 62.976 68.421 0.00 0.00 0.00 3.51
388 389 2.547123 AATAGTGGCGGAGGGGGAGT 62.547 60.000 0.00 0.00 0.00 3.85
389 390 1.345715 AAATAGTGGCGGAGGGGGAG 61.346 60.000 0.00 0.00 0.00 4.30
390 391 0.030909 TAAATAGTGGCGGAGGGGGA 60.031 55.000 0.00 0.00 0.00 4.81
391 392 1.064825 ATAAATAGTGGCGGAGGGGG 58.935 55.000 0.00 0.00 0.00 5.40
392 393 3.868754 GCTTATAAATAGTGGCGGAGGGG 60.869 52.174 0.00 0.00 0.00 4.79
393 394 3.008049 AGCTTATAAATAGTGGCGGAGGG 59.992 47.826 0.00 0.00 0.00 4.30
394 395 4.246458 GAGCTTATAAATAGTGGCGGAGG 58.754 47.826 0.00 0.00 0.00 4.30
395 396 4.246458 GGAGCTTATAAATAGTGGCGGAG 58.754 47.826 0.00 0.00 0.00 4.63
396 397 3.007614 GGGAGCTTATAAATAGTGGCGGA 59.992 47.826 0.00 0.00 0.00 5.54
397 398 3.335579 GGGAGCTTATAAATAGTGGCGG 58.664 50.000 0.00 0.00 0.00 6.13
398 399 3.335579 GGGGAGCTTATAAATAGTGGCG 58.664 50.000 0.00 0.00 0.00 5.69
399 400 3.687125 GGGGGAGCTTATAAATAGTGGC 58.313 50.000 0.00 0.00 0.00 5.01
400 401 3.581332 TCGGGGGAGCTTATAAATAGTGG 59.419 47.826 0.00 0.00 0.00 4.00
401 402 4.527038 TCTCGGGGGAGCTTATAAATAGTG 59.473 45.833 0.00 0.00 0.00 2.74
402 403 4.748701 TCTCGGGGGAGCTTATAAATAGT 58.251 43.478 0.00 0.00 0.00 2.12
403 404 5.480772 TCTTCTCGGGGGAGCTTATAAATAG 59.519 44.000 0.00 0.00 0.00 1.73
404 405 5.245526 GTCTTCTCGGGGGAGCTTATAAATA 59.754 44.000 0.00 0.00 0.00 1.40
405 406 4.040584 GTCTTCTCGGGGGAGCTTATAAAT 59.959 45.833 0.00 0.00 0.00 1.40
406 407 3.387050 GTCTTCTCGGGGGAGCTTATAAA 59.613 47.826 0.00 0.00 0.00 1.40
407 408 2.963782 GTCTTCTCGGGGGAGCTTATAA 59.036 50.000 0.00 0.00 0.00 0.98
408 409 2.177233 AGTCTTCTCGGGGGAGCTTATA 59.823 50.000 0.00 0.00 0.00 0.98
409 410 1.062810 AGTCTTCTCGGGGGAGCTTAT 60.063 52.381 0.00 0.00 0.00 1.73
410 411 0.335361 AGTCTTCTCGGGGGAGCTTA 59.665 55.000 0.00 0.00 0.00 3.09
411 412 0.545548 AAGTCTTCTCGGGGGAGCTT 60.546 55.000 0.00 0.00 0.00 3.74
412 413 1.079438 AAGTCTTCTCGGGGGAGCT 59.921 57.895 0.00 0.00 0.00 4.09
413 414 1.219393 CAAGTCTTCTCGGGGGAGC 59.781 63.158 0.00 0.00 0.00 4.70
414 415 0.533032 GTCAAGTCTTCTCGGGGGAG 59.467 60.000 0.00 0.00 0.00 4.30
415 416 0.114560 AGTCAAGTCTTCTCGGGGGA 59.885 55.000 0.00 0.00 0.00 4.81
416 417 0.977395 AAGTCAAGTCTTCTCGGGGG 59.023 55.000 0.00 0.00 0.00 5.40
417 418 1.066787 GGAAGTCAAGTCTTCTCGGGG 60.067 57.143 6.93 0.00 42.19 5.73
418 419 1.618837 TGGAAGTCAAGTCTTCTCGGG 59.381 52.381 6.93 0.00 42.19 5.14
419 420 3.601443 ATGGAAGTCAAGTCTTCTCGG 57.399 47.619 6.93 0.00 42.19 4.63
420 421 3.610242 CGAATGGAAGTCAAGTCTTCTCG 59.390 47.826 6.93 5.38 42.19 4.04
421 422 3.369451 GCGAATGGAAGTCAAGTCTTCTC 59.631 47.826 6.93 0.00 42.19 2.87
422 423 3.330267 GCGAATGGAAGTCAAGTCTTCT 58.670 45.455 6.93 0.00 42.19 2.85
423 424 2.092838 CGCGAATGGAAGTCAAGTCTTC 59.907 50.000 0.00 0.00 41.92 2.87
424 425 2.069273 CGCGAATGGAAGTCAAGTCTT 58.931 47.619 0.00 0.00 0.00 3.01
425 426 1.272490 TCGCGAATGGAAGTCAAGTCT 59.728 47.619 6.20 0.00 0.00 3.24
426 427 1.390463 GTCGCGAATGGAAGTCAAGTC 59.610 52.381 12.06 0.00 0.00 3.01
427 428 1.429463 GTCGCGAATGGAAGTCAAGT 58.571 50.000 12.06 0.00 0.00 3.16
428 429 0.366871 CGTCGCGAATGGAAGTCAAG 59.633 55.000 12.06 0.00 0.00 3.02
429 430 1.011968 CCGTCGCGAATGGAAGTCAA 61.012 55.000 20.87 0.00 35.91 3.18
430 431 1.445410 CCGTCGCGAATGGAAGTCA 60.445 57.895 20.87 0.00 35.91 3.41
431 432 2.799540 GCCGTCGCGAATGGAAGTC 61.800 63.158 27.52 9.81 35.91 3.01
432 433 2.813908 GCCGTCGCGAATGGAAGT 60.814 61.111 27.52 0.00 35.91 3.01
433 434 2.813474 TGCCGTCGCGAATGGAAG 60.813 61.111 27.52 8.12 35.91 3.46
434 435 3.115892 GTGCCGTCGCGAATGGAA 61.116 61.111 27.52 17.65 35.91 3.53
435 436 3.867700 TTGTGCCGTCGCGAATGGA 62.868 57.895 27.52 13.73 35.91 3.41
436 437 3.367051 CTTGTGCCGTCGCGAATGG 62.367 63.158 21.08 21.08 38.08 3.16
437 438 2.096406 CTTGTGCCGTCGCGAATG 59.904 61.111 12.06 6.49 38.08 2.67
438 439 3.788766 GCTTGTGCCGTCGCGAAT 61.789 61.111 12.06 0.00 38.08 3.34
441 442 4.724697 CTTGCTTGTGCCGTCGCG 62.725 66.667 0.00 0.00 38.08 5.87
442 443 2.770587 CTTCTTGCTTGTGCCGTCGC 62.771 60.000 0.00 0.00 38.71 5.19
443 444 1.205064 CTTCTTGCTTGTGCCGTCG 59.795 57.895 0.00 0.00 38.71 5.12
444 445 0.514691 CTCTTCTTGCTTGTGCCGTC 59.485 55.000 0.00 0.00 38.71 4.79
445 446 0.106708 TCTCTTCTTGCTTGTGCCGT 59.893 50.000 0.00 0.00 38.71 5.68
446 447 0.795085 CTCTCTTCTTGCTTGTGCCG 59.205 55.000 0.00 0.00 38.71 5.69
447 448 1.163554 CCTCTCTTCTTGCTTGTGCC 58.836 55.000 0.00 0.00 38.71 5.01
448 449 2.175878 TCCTCTCTTCTTGCTTGTGC 57.824 50.000 0.00 0.00 40.20 4.57
449 450 5.505173 TTTTTCCTCTCTTCTTGCTTGTG 57.495 39.130 0.00 0.00 0.00 3.33
471 472 1.964830 GCGGAGGGATTGGGGATTTTT 60.965 52.381 0.00 0.00 0.00 1.94
472 473 0.397114 GCGGAGGGATTGGGGATTTT 60.397 55.000 0.00 0.00 0.00 1.82
473 474 1.230212 GCGGAGGGATTGGGGATTT 59.770 57.895 0.00 0.00 0.00 2.17
474 475 2.768022 GGCGGAGGGATTGGGGATT 61.768 63.158 0.00 0.00 0.00 3.01
475 476 3.178611 GGCGGAGGGATTGGGGAT 61.179 66.667 0.00 0.00 0.00 3.85
478 479 4.506255 GTGGGCGGAGGGATTGGG 62.506 72.222 0.00 0.00 0.00 4.12
479 480 4.506255 GGTGGGCGGAGGGATTGG 62.506 72.222 0.00 0.00 0.00 3.16
480 481 4.506255 GGGTGGGCGGAGGGATTG 62.506 72.222 0.00 0.00 0.00 2.67
486 487 4.394712 GTGAGTGGGTGGGCGGAG 62.395 72.222 0.00 0.00 0.00 4.63
490 491 3.570212 AGTGGTGAGTGGGTGGGC 61.570 66.667 0.00 0.00 0.00 5.36
491 492 2.431683 CAGTGGTGAGTGGGTGGG 59.568 66.667 0.00 0.00 0.00 4.61
492 493 2.281761 GCAGTGGTGAGTGGGTGG 60.282 66.667 0.00 0.00 0.00 4.61
493 494 1.302033 GAGCAGTGGTGAGTGGGTG 60.302 63.158 0.00 0.00 0.00 4.61
494 495 2.520536 GGAGCAGTGGTGAGTGGGT 61.521 63.158 0.00 0.00 0.00 4.51
495 496 2.177594 GAGGAGCAGTGGTGAGTGGG 62.178 65.000 0.00 0.00 0.00 4.61
496 497 1.294780 GAGGAGCAGTGGTGAGTGG 59.705 63.158 0.00 0.00 0.00 4.00
497 498 1.080230 CGAGGAGCAGTGGTGAGTG 60.080 63.158 0.00 0.00 0.00 3.51
498 499 3.371021 CGAGGAGCAGTGGTGAGT 58.629 61.111 0.00 0.00 0.00 3.41
1026 1027 4.387765 AAGGGGAGGGGGAAGGGG 62.388 72.222 0.00 0.00 0.00 4.79
1030 1034 1.543896 CAAGGAAGGGGAGGGGGAA 60.544 63.158 0.00 0.00 0.00 3.97
1036 1044 0.620121 AGAGGAGCAAGGAAGGGGAG 60.620 60.000 0.00 0.00 0.00 4.30
1047 1055 1.380380 TCCAGCGATGAGAGGAGCA 60.380 57.895 0.06 0.00 0.00 4.26
1048 1056 1.067250 GTCCAGCGATGAGAGGAGC 59.933 63.158 0.06 0.00 0.00 4.70
1057 1072 1.754226 GAAGGAGAGAAGTCCAGCGAT 59.246 52.381 0.00 0.00 39.34 4.58
1059 1074 1.134175 GAGAAGGAGAGAAGTCCAGCG 59.866 57.143 0.00 0.00 39.34 5.18
1073 1088 0.875728 AGTCGACAGTGACGAGAAGG 59.124 55.000 19.50 0.00 43.70 3.46
1090 1112 2.282745 GAGCAAAGGCAGGGCAGT 60.283 61.111 0.00 0.00 44.61 4.40
1091 1113 3.437795 CGAGCAAAGGCAGGGCAG 61.438 66.667 0.00 0.00 44.61 4.85
1092 1114 4.269523 ACGAGCAAAGGCAGGGCA 62.270 61.111 0.00 0.00 44.61 5.36
1093 1115 3.741476 CACGAGCAAAGGCAGGGC 61.741 66.667 0.00 0.00 44.61 5.19
1094 1116 3.058160 CCACGAGCAAAGGCAGGG 61.058 66.667 0.00 0.00 44.61 4.45
1095 1117 2.826777 ATCCCACGAGCAAAGGCAGG 62.827 60.000 0.00 0.00 44.61 4.85
1096 1118 0.962356 AATCCCACGAGCAAAGGCAG 60.962 55.000 0.00 0.00 44.61 4.85
1102 1124 0.461870 CGATCCAATCCCACGAGCAA 60.462 55.000 0.00 0.00 0.00 3.91
1107 1129 2.967076 CGGCGATCCAATCCCACG 60.967 66.667 0.00 0.00 0.00 4.94
1159 1181 1.407025 GCGAGGTTAAAAGAGAGGGGG 60.407 57.143 0.00 0.00 0.00 5.40
1193 1215 1.139654 TGCTATCACTGGATGCAGGTC 59.860 52.381 19.22 1.57 34.71 3.85
1216 1238 6.684555 CAGCAGTGCTAATTAAAAAGATCGAC 59.315 38.462 19.26 0.00 36.40 4.20
1219 1241 8.748380 AAACAGCAGTGCTAATTAAAAAGATC 57.252 30.769 19.26 0.00 36.40 2.75
1233 1255 1.004292 ACGAACGTTAAACAGCAGTGC 60.004 47.619 7.13 7.13 0.00 4.40
1234 1256 3.313274 AACGAACGTTAAACAGCAGTG 57.687 42.857 10.83 0.00 36.46 3.66
1252 1280 5.220359 GCTCCGTTTTTCGTAGATCCTAAAC 60.220 44.000 0.00 0.00 35.04 2.01
1256 1284 2.496470 AGCTCCGTTTTTCGTAGATCCT 59.504 45.455 0.00 0.00 35.04 3.24
1264 1292 1.708027 CGGCTAGCTCCGTTTTTCG 59.292 57.895 15.72 2.04 44.18 3.46
1276 1304 3.305471 GGATCCACTAAACTAGCGGCTAG 60.305 52.174 30.27 30.27 39.72 3.42
1280 1344 3.821421 AAGGATCCACTAAACTAGCGG 57.179 47.619 15.82 0.00 0.00 5.52
1281 1345 6.513180 TGATTAAGGATCCACTAAACTAGCG 58.487 40.000 15.82 0.00 33.60 4.26
1291 1355 4.141846 TGAGCTGACTGATTAAGGATCCAC 60.142 45.833 15.82 0.40 33.60 4.02
1296 1360 3.089284 TCGTGAGCTGACTGATTAAGGA 58.911 45.455 0.79 0.00 0.00 3.36
1297 1361 3.510388 TCGTGAGCTGACTGATTAAGG 57.490 47.619 0.79 0.00 0.00 2.69
1304 1368 1.812922 GGGCATCGTGAGCTGACTG 60.813 63.158 0.79 0.00 35.09 3.51
1315 1379 0.673437 AAACAACCACAAGGGCATCG 59.327 50.000 0.00 0.00 42.05 3.84
1320 1384 2.035832 GTCCATCAAACAACCACAAGGG 59.964 50.000 0.00 0.00 44.81 3.95
1332 1396 0.179032 ACACACCTGCGTCCATCAAA 60.179 50.000 0.00 0.00 0.00 2.69
1348 1412 0.530288 ACAGCAACCACAAACCACAC 59.470 50.000 0.00 0.00 0.00 3.82
1354 1418 3.211045 GTCCTAGAACAGCAACCACAAA 58.789 45.455 0.00 0.00 0.00 2.83
1375 1439 0.378257 CATCCATCAAGAAACCGGCG 59.622 55.000 0.00 0.00 0.00 6.46
1378 1442 0.740737 GGCCATCCATCAAGAAACCG 59.259 55.000 0.00 0.00 0.00 4.44
1396 1460 2.928334 CTCCCAAGATCACAGGAATGG 58.072 52.381 0.00 0.00 0.00 3.16
1423 1487 1.077212 ACCATCAGATGCCACTGCC 60.077 57.895 4.68 0.00 37.75 4.85
1474 1538 1.004745 TGCTTCCCTGGAGAAATGTCC 59.995 52.381 0.00 0.00 37.10 4.02
1508 1572 2.685380 CCCCTGTCCCGAAGCTCT 60.685 66.667 0.00 0.00 0.00 4.09
1517 1581 1.225704 CTGCATTCTCCCCCTGTCC 59.774 63.158 0.00 0.00 0.00 4.02
1519 1583 1.064166 CAATCTGCATTCTCCCCCTGT 60.064 52.381 0.00 0.00 0.00 4.00
1534 1598 1.004044 CCAGCCTCCACTGAACAATCT 59.996 52.381 0.00 0.00 40.25 2.40
1544 1608 1.589716 GCACACATTCCAGCCTCCAC 61.590 60.000 0.00 0.00 0.00 4.02
1564 1628 0.537371 CAACCGGCTTGGAGAAACCT 60.537 55.000 0.00 0.00 42.00 3.50
1577 1641 3.302344 CAACCCCAAGCCAACCGG 61.302 66.667 0.00 0.00 0.00 5.28
1581 1645 1.703411 CTTCTTCAACCCCAAGCCAA 58.297 50.000 0.00 0.00 0.00 4.52
1582 1646 0.178964 CCTTCTTCAACCCCAAGCCA 60.179 55.000 0.00 0.00 0.00 4.75
1600 1664 2.435059 GCGCACTTCTGGAGGTCC 60.435 66.667 0.30 0.00 0.00 4.46
1656 1720 0.463204 ATCACAGCATGAGTCCTCCG 59.537 55.000 0.00 0.00 41.91 4.63
1660 1724 1.434622 CGGCATCACAGCATGAGTCC 61.435 60.000 0.00 0.45 41.91 3.85
1678 1742 2.920964 CTTCGGCGCGTCATCATCG 61.921 63.158 12.89 2.90 0.00 3.84
1679 1743 2.589492 CCTTCGGCGCGTCATCATC 61.589 63.158 12.89 0.00 0.00 2.92
1680 1744 2.586079 CCTTCGGCGCGTCATCAT 60.586 61.111 12.89 0.00 0.00 2.45
1782 1855 6.243900 AGGAAATGGATCGAAAGCATGATAT 58.756 36.000 0.00 0.00 0.00 1.63
1812 1885 9.550406 GACTAGATGTTCATGTCTACTAGTAGT 57.450 37.037 25.58 8.14 38.98 2.73
1813 1886 9.772973 AGACTAGATGTTCATGTCTACTAGTAG 57.227 37.037 21.87 21.87 38.98 2.57
1884 1957 8.326765 TCATTACCTAGCTTAAAACCTGGATA 57.673 34.615 0.00 0.00 0.00 2.59
1886 1959 6.630203 TCATTACCTAGCTTAAAACCTGGA 57.370 37.500 0.00 0.00 0.00 3.86
1926 2196 4.652822 GGTCAGAAACCTGGATAGTTGTT 58.347 43.478 0.00 0.00 45.45 2.83
1939 2215 4.999950 AGAATGTGATGACAGGTCAGAAAC 59.000 41.667 8.24 6.62 43.61 2.78
1944 2220 4.074259 CCAAAGAATGTGATGACAGGTCA 58.926 43.478 4.37 4.37 44.59 4.02
1976 2252 9.508642 ACTCTTATAAATCCCTAAGCATTAAGC 57.491 33.333 0.00 0.00 46.19 3.09
1980 2256 9.125026 CAACACTCTTATAAATCCCTAAGCATT 57.875 33.333 0.00 0.00 0.00 3.56
1982 2258 7.857456 TCAACACTCTTATAAATCCCTAAGCA 58.143 34.615 0.00 0.00 0.00 3.91
2001 2282 9.423061 ACAAAGAAGCCATAAATTAATCAACAC 57.577 29.630 0.00 0.00 0.00 3.32
2014 2295 8.417106 TCAAACAAATACAACAAAGAAGCCATA 58.583 29.630 0.00 0.00 0.00 2.74
2017 2298 6.292328 GCTCAAACAAATACAACAAAGAAGCC 60.292 38.462 0.00 0.00 0.00 4.35
2021 2302 9.979578 ATAATGCTCAAACAAATACAACAAAGA 57.020 25.926 0.00 0.00 0.00 2.52
2031 2312 9.153721 CACATGGTTTATAATGCTCAAACAAAT 57.846 29.630 0.00 0.00 34.55 2.32
2032 2313 8.147058 ACACATGGTTTATAATGCTCAAACAAA 58.853 29.630 0.00 0.00 34.55 2.83
2033 2314 7.665690 ACACATGGTTTATAATGCTCAAACAA 58.334 30.769 0.00 0.00 34.55 2.83
2067 2348 7.509318 ACATGCTATCTATACCTTTCCACACTA 59.491 37.037 0.00 0.00 0.00 2.74
2068 2349 6.327626 ACATGCTATCTATACCTTTCCACACT 59.672 38.462 0.00 0.00 0.00 3.55
2069 2350 6.525629 ACATGCTATCTATACCTTTCCACAC 58.474 40.000 0.00 0.00 0.00 3.82
2070 2351 6.747414 ACATGCTATCTATACCTTTCCACA 57.253 37.500 0.00 0.00 0.00 4.17
2071 2352 6.073003 GCAACATGCTATCTATACCTTTCCAC 60.073 42.308 0.00 0.00 40.96 4.02
2174 2462 1.803334 TTGTCTTGCGGTGTCATACC 58.197 50.000 0.00 0.00 46.56 2.73
2228 2516 3.243367 GCAATACCACAACTGCAGAAACA 60.243 43.478 23.35 0.00 34.87 2.83
2309 2597 4.000988 ACGAAAAGCGATTCTGGTTGTAT 58.999 39.130 0.00 0.00 44.57 2.29
2310 2598 3.395639 ACGAAAAGCGATTCTGGTTGTA 58.604 40.909 0.00 0.00 44.57 2.41
2397 2685 0.597568 TTCTGGCTTGCCGACAAATG 59.402 50.000 7.18 0.00 34.74 2.32
2462 2761 3.330267 CGGAGACAAGAAAAGGAAGAGG 58.670 50.000 0.00 0.00 0.00 3.69
2645 2944 3.323979 TCTTGTCCTTCTTACGAGGCTTT 59.676 43.478 0.00 0.00 34.17 3.51
2651 2950 4.141892 TGTTTGGTCTTGTCCTTCTTACGA 60.142 41.667 0.00 0.00 0.00 3.43
2790 3089 2.037144 ACTTCGTCTACAGGTTGGTGT 58.963 47.619 0.00 0.00 34.21 4.16
2792 3091 3.118519 ACAAACTTCGTCTACAGGTTGGT 60.119 43.478 2.25 0.00 41.33 3.67
2824 3123 2.618709 CCAGTCTGGAAAACACAAGGTC 59.381 50.000 14.26 0.00 40.96 3.85
2836 3135 1.352083 CCAAGGTCTTCCAGTCTGGA 58.648 55.000 18.15 18.15 46.61 3.86
2895 3194 2.028930 GTCCAACATCTCGGTCTCAACT 60.029 50.000 0.00 0.00 0.00 3.16
2896 3195 2.028930 AGTCCAACATCTCGGTCTCAAC 60.029 50.000 0.00 0.00 0.00 3.18
2939 3238 0.881118 GAAGCTGGTTCCGCATTTCA 59.119 50.000 8.36 0.00 0.00 2.69
2940 3239 0.171231 GGAAGCTGGTTCCGCATTTC 59.829 55.000 21.45 0.00 45.69 2.17
3147 3476 8.908903 ACATACACAAACTAGTCCAAAATTCAA 58.091 29.630 0.00 0.00 0.00 2.69
3166 3496 8.755941 CAGCAGAACATACATAGTTACATACAC 58.244 37.037 0.00 0.00 0.00 2.90
3234 3564 4.149046 CGACCAGCGATTCTTTAGATAAGC 59.851 45.833 0.00 0.00 44.57 3.09
3413 3743 8.915871 ATGATTTGCAACATTTGTATGTAGAC 57.084 30.769 0.00 0.00 44.14 2.59
3457 3787 7.737869 TGACAGTAACCTAGGTTAAACATCAA 58.262 34.615 31.42 10.41 41.51 2.57
3522 3859 9.897744 TCAAGTATCTAACTGATTTTGCAAAAG 57.102 29.630 27.08 17.40 38.88 2.27
3539 3876 4.344679 CCTCATCCTCTGCTTCAAGTATCT 59.655 45.833 0.00 0.00 0.00 1.98
3628 3965 6.072508 TCACTGGTTCTTGAAACTAATGATGC 60.073 38.462 0.00 0.00 0.00 3.91
3731 4100 1.481056 CGTGGGTCCTGATATCCCCC 61.481 65.000 11.12 10.01 40.41 5.40
3732 4101 0.471211 TCGTGGGTCCTGATATCCCC 60.471 60.000 7.62 7.62 40.41 4.81
3733 4102 1.420430 TTCGTGGGTCCTGATATCCC 58.580 55.000 0.00 0.00 41.41 3.85
3734 4103 2.632996 TGATTCGTGGGTCCTGATATCC 59.367 50.000 0.00 0.00 0.00 2.59
3735 4104 4.058817 GTTGATTCGTGGGTCCTGATATC 58.941 47.826 0.00 0.00 0.00 1.63
3736 4105 3.454447 TGTTGATTCGTGGGTCCTGATAT 59.546 43.478 0.00 0.00 0.00 1.63
3737 4106 2.835156 TGTTGATTCGTGGGTCCTGATA 59.165 45.455 0.00 0.00 0.00 2.15
3738 4107 1.628340 TGTTGATTCGTGGGTCCTGAT 59.372 47.619 0.00 0.00 0.00 2.90
3739 4108 1.052617 TGTTGATTCGTGGGTCCTGA 58.947 50.000 0.00 0.00 0.00 3.86
3745 4114 1.890876 TCTGGTTGTTGATTCGTGGG 58.109 50.000 0.00 0.00 0.00 4.61
3785 4154 3.307059 GGAAGATGTAAGCTGTGACTGGT 60.307 47.826 0.00 0.00 24.31 4.00
3793 4162 4.080863 ACCACCTAAGGAAGATGTAAGCTG 60.081 45.833 0.00 0.00 24.31 4.24
3927 4297 2.345760 CCAACTGAGCACCATGGCC 61.346 63.158 13.04 2.82 0.00 5.36
4133 4503 1.670087 CCGCTCACTCTTCACAACGAT 60.670 52.381 0.00 0.00 0.00 3.73
4285 4655 2.482142 CCTGAACTATGAGGACTTCGCC 60.482 54.545 0.00 0.00 0.00 5.54
4288 4658 2.501723 TGCCCTGAACTATGAGGACTTC 59.498 50.000 0.00 0.00 0.00 3.01
4348 4718 7.312154 GCTTCATCATCTACAAGATAGACGAT 58.688 38.462 0.00 0.00 32.12 3.73
4438 4808 4.045771 TAGGCGAACGCTGCGTCA 62.046 61.111 29.07 6.79 39.99 4.35
4471 4841 8.367911 TGATTACTTAGTATCATGGCTAACTGG 58.632 37.037 0.00 0.00 0.00 4.00
4487 4857 7.386299 ACAAGTGCAGAAAGAGTGATTACTTAG 59.614 37.037 0.00 0.00 37.25 2.18
4492 4862 6.989759 TGTTACAAGTGCAGAAAGAGTGATTA 59.010 34.615 0.00 0.00 0.00 1.75
4518 4893 8.948631 TCATAACATTTCTTCCAGATGTACTC 57.051 34.615 0.00 0.00 33.88 2.59
4523 4898 6.825213 TGTCCTCATAACATTTCTTCCAGATG 59.175 38.462 0.00 0.00 0.00 2.90
4524 4899 6.962182 TGTCCTCATAACATTTCTTCCAGAT 58.038 36.000 0.00 0.00 0.00 2.90
4525 4900 6.373005 TGTCCTCATAACATTTCTTCCAGA 57.627 37.500 0.00 0.00 0.00 3.86
4527 4902 6.430925 CAGTTGTCCTCATAACATTTCTTCCA 59.569 38.462 0.00 0.00 0.00 3.53
4528 4903 6.655003 TCAGTTGTCCTCATAACATTTCTTCC 59.345 38.462 0.00 0.00 0.00 3.46
4529 4904 7.672983 TCAGTTGTCCTCATAACATTTCTTC 57.327 36.000 0.00 0.00 0.00 2.87
4530 4905 8.641498 AATCAGTTGTCCTCATAACATTTCTT 57.359 30.769 0.00 0.00 0.00 2.52
4531 4906 9.739276 TTAATCAGTTGTCCTCATAACATTTCT 57.261 29.630 0.00 0.00 0.00 2.52
4532 4907 9.774742 GTTAATCAGTTGTCCTCATAACATTTC 57.225 33.333 0.00 0.00 0.00 2.17
4534 4909 8.862325 TGTTAATCAGTTGTCCTCATAACATT 57.138 30.769 0.00 0.00 29.79 2.71
4536 4911 6.878923 CCTGTTAATCAGTTGTCCTCATAACA 59.121 38.462 0.00 0.00 42.19 2.41
4537 4912 6.879458 ACCTGTTAATCAGTTGTCCTCATAAC 59.121 38.462 4.93 0.00 42.19 1.89
4539 4914 6.406370 CACCTGTTAATCAGTTGTCCTCATA 58.594 40.000 4.93 0.00 42.19 2.15
4543 4922 3.394606 ACCACCTGTTAATCAGTTGTCCT 59.605 43.478 4.93 0.00 42.19 3.85
4549 4928 2.783135 CAGCACCACCTGTTAATCAGT 58.217 47.619 0.00 0.00 42.19 3.41
4594 4973 5.489792 TCTCACTCTTTAGAAAGGTGCAT 57.510 39.130 14.05 0.00 37.24 3.96
4660 5039 1.063174 GACAGGCGTCTGCAATGAATC 59.937 52.381 18.84 0.73 44.59 2.52
4667 5046 2.917227 TCCTGACAGGCGTCTGCA 60.917 61.111 18.84 14.98 44.59 4.41
4671 5050 2.927580 TTCGGTCCTGACAGGCGTC 61.928 63.158 17.33 9.27 42.93 5.19
4717 5096 1.868498 CCGTTTGTTCGAAAGCCACTA 59.132 47.619 0.00 0.00 0.00 2.74
4783 5162 2.565046 TGTGTCATGCTGATGTTCCA 57.435 45.000 0.00 0.00 0.00 3.53
4842 5221 8.237811 TCTACACTCTGTTATCTGCAATCATA 57.762 34.615 0.00 0.00 0.00 2.15
4849 5228 4.106197 CCGTTCTACACTCTGTTATCTGC 58.894 47.826 0.00 0.00 0.00 4.26
4915 5296 6.736123 AGATGCAAGCTCAAACAATGATATC 58.264 36.000 0.00 0.00 37.44 1.63
4916 5297 6.710597 AGATGCAAGCTCAAACAATGATAT 57.289 33.333 0.00 0.00 37.44 1.63
4917 5298 6.327154 CAAGATGCAAGCTCAAACAATGATA 58.673 36.000 0.00 0.00 37.44 2.15
4918 5299 5.168569 CAAGATGCAAGCTCAAACAATGAT 58.831 37.500 0.00 0.00 37.44 2.45
4919 5300 4.552355 CAAGATGCAAGCTCAAACAATGA 58.448 39.130 0.00 0.00 36.38 2.57
4920 5301 3.122948 GCAAGATGCAAGCTCAAACAATG 59.877 43.478 0.00 0.00 44.26 2.82
4921 5302 3.323243 GCAAGATGCAAGCTCAAACAAT 58.677 40.909 0.00 0.00 44.26 2.71
4922 5303 2.746269 GCAAGATGCAAGCTCAAACAA 58.254 42.857 0.00 0.00 44.26 2.83
4923 5304 2.427232 GCAAGATGCAAGCTCAAACA 57.573 45.000 0.00 0.00 44.26 2.83
4934 5315 1.138036 TGCGCATTGAGCAAGATGC 59.862 52.632 12.88 7.80 46.13 3.91
4940 5321 0.953727 AAGTTCTTGCGCATTGAGCA 59.046 45.000 12.75 11.22 46.13 4.26
4941 5322 1.069022 TCAAGTTCTTGCGCATTGAGC 60.069 47.619 12.75 14.92 40.87 4.26
4942 5323 2.847901 CTCAAGTTCTTGCGCATTGAG 58.152 47.619 27.03 27.03 40.45 3.02
4943 5324 1.069022 GCTCAAGTTCTTGCGCATTGA 60.069 47.619 19.16 19.16 33.26 2.57
4944 5325 1.068748 AGCTCAAGTTCTTGCGCATTG 60.069 47.619 23.14 13.05 35.30 2.82
4945 5326 1.242076 AGCTCAAGTTCTTGCGCATT 58.758 45.000 23.14 0.00 35.30 3.56
4946 5327 1.068748 CAAGCTCAAGTTCTTGCGCAT 60.069 47.619 23.14 12.94 35.30 4.73
4947 5328 0.308684 CAAGCTCAAGTTCTTGCGCA 59.691 50.000 23.14 5.66 35.30 6.09
4948 5329 3.083213 CAAGCTCAAGTTCTTGCGC 57.917 52.632 16.51 16.51 34.12 6.09
4951 5332 4.474113 GAAGATGCAAGCTCAAGTTCTTG 58.526 43.478 6.24 6.24 41.79 3.02
4952 5333 3.188048 CGAAGATGCAAGCTCAAGTTCTT 59.812 43.478 0.00 0.00 0.00 2.52
4953 5334 2.740981 CGAAGATGCAAGCTCAAGTTCT 59.259 45.455 0.00 0.00 0.00 3.01
4954 5335 2.481952 ACGAAGATGCAAGCTCAAGTTC 59.518 45.455 0.00 0.00 0.00 3.01
4955 5336 2.481952 GACGAAGATGCAAGCTCAAGTT 59.518 45.455 0.00 0.00 0.00 2.66
4956 5337 2.072298 GACGAAGATGCAAGCTCAAGT 58.928 47.619 0.00 0.00 0.00 3.16
4957 5338 2.093941 CAGACGAAGATGCAAGCTCAAG 59.906 50.000 0.00 0.00 0.00 3.02
4958 5339 2.071540 CAGACGAAGATGCAAGCTCAA 58.928 47.619 0.00 0.00 0.00 3.02
4959 5340 1.273327 TCAGACGAAGATGCAAGCTCA 59.727 47.619 0.00 0.00 0.00 4.26
4960 5341 2.001812 TCAGACGAAGATGCAAGCTC 57.998 50.000 0.00 0.00 0.00 4.09
4961 5342 2.462456 TTCAGACGAAGATGCAAGCT 57.538 45.000 0.00 0.00 0.00 3.74
4962 5343 3.754188 ATTTCAGACGAAGATGCAAGC 57.246 42.857 0.00 0.00 31.28 4.01
4963 5344 7.244166 AGATTATTTCAGACGAAGATGCAAG 57.756 36.000 0.00 0.00 31.28 4.01
4964 5345 6.019559 CGAGATTATTTCAGACGAAGATGCAA 60.020 38.462 0.00 0.00 31.28 4.08
4965 5346 5.460091 CGAGATTATTTCAGACGAAGATGCA 59.540 40.000 0.00 0.00 31.28 3.96
4966 5347 5.107683 CCGAGATTATTTCAGACGAAGATGC 60.108 44.000 0.00 0.00 31.28 3.91
4967 5348 5.980116 ACCGAGATTATTTCAGACGAAGATG 59.020 40.000 0.00 0.00 31.28 2.90
4968 5349 6.150396 ACCGAGATTATTTCAGACGAAGAT 57.850 37.500 0.00 0.00 31.28 2.40
4969 5350 5.578005 ACCGAGATTATTTCAGACGAAGA 57.422 39.130 0.00 0.00 31.28 2.87
4970 5351 5.805486 TGAACCGAGATTATTTCAGACGAAG 59.195 40.000 0.00 0.00 31.28 3.79
4971 5352 5.716094 TGAACCGAGATTATTTCAGACGAA 58.284 37.500 0.00 0.00 0.00 3.85
4972 5353 5.319140 TGAACCGAGATTATTTCAGACGA 57.681 39.130 0.00 0.00 0.00 4.20
4973 5354 6.036083 ACAATGAACCGAGATTATTTCAGACG 59.964 38.462 0.00 0.00 31.72 4.18
4974 5355 7.308782 ACAATGAACCGAGATTATTTCAGAC 57.691 36.000 0.00 0.00 31.72 3.51
4975 5356 7.921786 AACAATGAACCGAGATTATTTCAGA 57.078 32.000 0.00 0.00 31.72 3.27
4976 5357 8.970691 AAAACAATGAACCGAGATTATTTCAG 57.029 30.769 0.00 0.00 31.72 3.02
4977 5358 8.792633 AGAAAACAATGAACCGAGATTATTTCA 58.207 29.630 0.00 0.00 32.71 2.69
4978 5359 9.626045 AAGAAAACAATGAACCGAGATTATTTC 57.374 29.630 0.00 0.00 0.00 2.17
4979 5360 9.981114 AAAGAAAACAATGAACCGAGATTATTT 57.019 25.926 0.00 0.00 0.00 1.40
4980 5361 9.981114 AAAAGAAAACAATGAACCGAGATTATT 57.019 25.926 0.00 0.00 0.00 1.40
4981 5362 9.981114 AAAAAGAAAACAATGAACCGAGATTAT 57.019 25.926 0.00 0.00 0.00 1.28
4982 5363 9.458374 GAAAAAGAAAACAATGAACCGAGATTA 57.542 29.630 0.00 0.00 0.00 1.75
4983 5364 7.438160 GGAAAAAGAAAACAATGAACCGAGATT 59.562 33.333 0.00 0.00 0.00 2.40
4984 5365 6.923508 GGAAAAAGAAAACAATGAACCGAGAT 59.076 34.615 0.00 0.00 0.00 2.75
4985 5366 6.096282 AGGAAAAAGAAAACAATGAACCGAGA 59.904 34.615 0.00 0.00 0.00 4.04
4986 5367 6.273071 AGGAAAAAGAAAACAATGAACCGAG 58.727 36.000 0.00 0.00 0.00 4.63
4987 5368 6.215495 AGGAAAAAGAAAACAATGAACCGA 57.785 33.333 0.00 0.00 0.00 4.69
4988 5369 6.902224 AAGGAAAAAGAAAACAATGAACCG 57.098 33.333 0.00 0.00 0.00 4.44
4989 5370 8.726068 TGAAAAGGAAAAAGAAAACAATGAACC 58.274 29.630 0.00 0.00 0.00 3.62
5009 5390 3.181480 TGGCGACCTTCCTTTTTGAAAAG 60.181 43.478 8.83 8.83 43.82 2.27
5010 5391 2.761208 TGGCGACCTTCCTTTTTGAAAA 59.239 40.909 0.00 0.00 0.00 2.29
5011 5392 2.379972 TGGCGACCTTCCTTTTTGAAA 58.620 42.857 0.00 0.00 0.00 2.69
5012 5393 2.060050 TGGCGACCTTCCTTTTTGAA 57.940 45.000 0.00 0.00 0.00 2.69
5013 5394 2.286365 ATGGCGACCTTCCTTTTTGA 57.714 45.000 0.00 0.00 0.00 2.69
5014 5395 2.352715 GGAATGGCGACCTTCCTTTTTG 60.353 50.000 17.34 0.00 38.31 2.44
5015 5396 1.893137 GGAATGGCGACCTTCCTTTTT 59.107 47.619 17.34 0.00 38.31 1.94
5016 5397 1.545841 GGAATGGCGACCTTCCTTTT 58.454 50.000 17.34 0.00 38.31 2.27
5017 5398 3.266240 GGAATGGCGACCTTCCTTT 57.734 52.632 17.34 0.00 38.31 3.11
5019 5400 4.153957 AGGAATGGCGACCTTCCT 57.846 55.556 21.07 21.07 45.08 3.36
5020 5401 0.322546 ACAAGGAATGGCGACCTTCC 60.323 55.000 16.95 16.95 43.54 3.46
5021 5402 2.280628 CTACAAGGAATGGCGACCTTC 58.719 52.381 0.00 0.00 43.54 3.46
5022 5403 1.065418 CCTACAAGGAATGGCGACCTT 60.065 52.381 0.00 0.00 45.87 3.50
5023 5404 0.541863 CCTACAAGGAATGGCGACCT 59.458 55.000 0.00 0.00 37.67 3.85
5024 5405 0.463833 CCCTACAAGGAATGGCGACC 60.464 60.000 0.00 0.00 37.67 4.79
5025 5406 0.539986 TCCCTACAAGGAATGGCGAC 59.460 55.000 0.00 0.00 37.67 5.19
5026 5407 1.209504 CTTCCCTACAAGGAATGGCGA 59.790 52.381 0.00 0.00 44.87 5.54
5027 5408 1.668419 CTTCCCTACAAGGAATGGCG 58.332 55.000 0.00 0.00 44.87 5.69
5028 5409 1.340991 TGCTTCCCTACAAGGAATGGC 60.341 52.381 0.00 0.00 44.87 4.40
5029 5410 2.755103 GTTGCTTCCCTACAAGGAATGG 59.245 50.000 0.00 0.00 44.87 3.16
5030 5411 3.690460 AGTTGCTTCCCTACAAGGAATG 58.310 45.455 0.00 0.00 44.87 2.67
5031 5412 4.623171 CGTAGTTGCTTCCCTACAAGGAAT 60.623 45.833 0.00 0.00 44.87 3.01
5032 5413 3.306502 CGTAGTTGCTTCCCTACAAGGAA 60.307 47.826 0.00 0.00 43.77 3.36
5033 5414 2.232941 CGTAGTTGCTTCCCTACAAGGA 59.767 50.000 0.00 0.00 37.67 3.36
5034 5415 2.232941 TCGTAGTTGCTTCCCTACAAGG 59.767 50.000 0.00 0.00 34.52 3.61
5035 5416 3.512680 CTCGTAGTTGCTTCCCTACAAG 58.487 50.000 0.00 0.00 34.52 3.16
5036 5417 2.353406 GCTCGTAGTTGCTTCCCTACAA 60.353 50.000 0.00 0.00 34.52 2.41
5037 5418 1.203994 GCTCGTAGTTGCTTCCCTACA 59.796 52.381 0.00 0.00 34.52 2.74
5038 5419 1.203994 TGCTCGTAGTTGCTTCCCTAC 59.796 52.381 0.00 0.00 0.00 3.18
5039 5420 1.203994 GTGCTCGTAGTTGCTTCCCTA 59.796 52.381 0.00 0.00 0.00 3.53
5040 5421 0.037232 GTGCTCGTAGTTGCTTCCCT 60.037 55.000 0.00 0.00 0.00 4.20
5041 5422 0.037232 AGTGCTCGTAGTTGCTTCCC 60.037 55.000 0.00 0.00 0.00 3.97
5042 5423 2.649331 TAGTGCTCGTAGTTGCTTCC 57.351 50.000 0.00 0.00 0.00 3.46
5043 5424 3.927142 ACATTAGTGCTCGTAGTTGCTTC 59.073 43.478 0.00 0.00 0.00 3.86
5044 5425 3.679980 CACATTAGTGCTCGTAGTTGCTT 59.320 43.478 0.00 0.00 39.21 3.91
5045 5426 3.254060 CACATTAGTGCTCGTAGTTGCT 58.746 45.455 0.00 0.00 39.21 3.91
5046 5427 3.641439 CACATTAGTGCTCGTAGTTGC 57.359 47.619 0.00 0.00 39.21 4.17
5058 5439 4.592942 ACAACTCCATGATGCACATTAGT 58.407 39.130 0.00 0.00 37.07 2.24
5059 5440 4.260497 CGACAACTCCATGATGCACATTAG 60.260 45.833 0.00 0.00 37.07 1.73
5060 5441 3.622612 CGACAACTCCATGATGCACATTA 59.377 43.478 0.00 0.00 37.07 1.90
5061 5442 2.421073 CGACAACTCCATGATGCACATT 59.579 45.455 0.00 0.00 37.07 2.71
5062 5443 2.011947 CGACAACTCCATGATGCACAT 58.988 47.619 0.00 0.00 40.17 3.21
5063 5444 1.441738 CGACAACTCCATGATGCACA 58.558 50.000 0.00 0.00 0.00 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.