AutoCloner

Multiple sequence alignment - TraesCS1A01G037100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1A01G037100	chr1A	100.000	3083	0	0	1	3083	20874501	20871419	0.000000e+00	5694
1	TraesCS1A01G037100	chr1A	73.298	1131	226	49	1003	2098	570388606	570387517	2.280000e-91	346
2	TraesCS1A01G037100	chr1A	79.325	237	45	4	1003	1237	570374469	570374235	2.460000e-36	163
3	TraesCS1A01G037100	chr1A	85.333	150	22	0	1003	1152	570427050	570426901	4.120000e-34	156
4	TraesCS1A01G037100	chrUn	93.344	2599	81	26	498	3052	10320505	10323055	0.000000e+00	3757
5	TraesCS1A01G037100	chrUn	93.344	2599	81	26	498	3052	328149619	328152169	0.000000e+00	3757
6	TraesCS1A01G037100	chr1B	92.638	1141	46	10	977	2108	27345189	27344078	0.000000e+00	1607
7	TraesCS1A01G037100	chr1B	90.000	290	26	1	136	425	675985788	675986074	3.750000e-99	372
8	TraesCS1A01G037100	chr1B	72.478	1497	283	86	1008	2444	660013009	660011582	2.260000e-96	363
9	TraesCS1A01G037100	chr1B	88.621	290	30	1	136	425	17527112	17526826	1.760000e-92	350
10	TraesCS1A01G037100	chr1B	81.222	442	20	21	512	929	27345587	27345185	6.460000e-77	298
11	TraesCS1A01G037100	chr1B	97.561	123	3	0	1	123	120661501	120661623	8.660000e-51	211
12	TraesCS1A01G037100	chr1B	94.737	95	4	1	424	518	27346684	27346591	2.480000e-31	147
13	TraesCS1A01G037100	chr1D	90.301	299	26	1	126	424	423279339	423279044	3.730000e-104	388
14	TraesCS1A01G037100	chr1D	73.740	1131	219	49	1004	2098	474877368	474876280	3.750000e-99	372
15	TraesCS1A01G037100	chr1D	89.931	288	23	2	136	423	478251164	478251445	1.750000e-97	366
16	TraesCS1A01G037100	chr1D	96.032	126	5	0	1	126	9004936	9004811	4.030000e-49	206
17	TraesCS1A01G037100	chr1D	96.032	126	5	0	1	126	423279585	423279460	4.030000e-49	206
18	TraesCS1A01G037100	chr1D	84.416	154	24	0	1003	1156	81287251	81287404	5.320000e-33	152
19	TraesCS1A01G037100	chr6D	88.000	300	32	3	126	425	420557093	420556798	4.890000e-93	351
20	TraesCS1A01G037100	chr6D	87.000	300	31	4	126	425	223933003	223932712	6.370000e-87	331
21	TraesCS1A01G037100	chr5D	87.748	302	31	3	126	426	242920115	242919819	6.330000e-92	348
22	TraesCS1A01G037100	chr5D	96.032	126	5	0	1	126	57215394	57215519	4.030000e-49	206
23	TraesCS1A01G037100	chr7A	88.194	288	34	0	136	423	211211020	211211307	8.180000e-91	344
24	TraesCS1A01G037100	chr7A	95.385	130	5	1	1	130	134478695	134478823	4.030000e-49	206
25	TraesCS1A01G037100	chr6A	86.913	298	35	3	126	423	286335721	286335428	6.370000e-87	331
26	TraesCS1A01G037100	chr2D	96.154	130	4	1	1	130	536205605	536205477	8.660000e-51	211
27	TraesCS1A01G037100	chr2D	96.032	126	5	0	1	126	525938302	525938177	4.030000e-49	206
28	TraesCS1A01G037100	chr7D	96.032	126	5	0	1	126	607112792	607112667	4.030000e-49	206
29	TraesCS1A01G037100	chr4D	96.032	126	5	0	1	126	41197659	41197534	4.030000e-49	206

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1A01G037100	chr1A	20871419	20874501	3082	True	5694	5694	100.000000	1	3083	1	chr1A.!!$R1	3082
1	TraesCS1A01G037100	chr1A	570387517	570388606	1089	True	346	346	73.298000	1003	2098	1	chr1A.!!$R3	1095
2	TraesCS1A01G037100	chrUn	10320505	10323055	2550	False	3757	3757	93.344000	498	3052	1	chrUn.!!$F1	2554
3	TraesCS1A01G037100	chrUn	328149619	328152169	2550	False	3757	3757	93.344000	498	3052	1	chrUn.!!$F2	2554
4	TraesCS1A01G037100	chr1B	27344078	27346684	2606	True	684	1607	89.532333	424	2108	3	chr1B.!!$R3	1684
5	TraesCS1A01G037100	chr1B	660011582	660013009	1427	True	363	363	72.478000	1008	2444	1	chr1B.!!$R2	1436
6	TraesCS1A01G037100	chr1D	474876280	474877368	1088	True	372	372	73.740000	1004	2098	1	chr1D.!!$R2	1094
7	TraesCS1A01G037100	chr1D	423279044	423279585	541	True	297	388	93.166500	1	424	2	chr1D.!!$R3	423

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
880	2045	0.034896	CTACCGTGGCTTGTGAGGTT	59.965	55.0	0.0	0.0	36.49	3.5	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2853	4091	1.895131	GGGTAGACAGTACGGGACAAA	59.105	52.381	0.0	0.0	0.0	2.83	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
47	48	7.260558	AGAATCATACGACGAACTCATCTAA	57.739	36.000	0.00	0.00	0.00	2.10
54	55	6.153212	ACGACGAACTCATCTAAAATGTTG	57.847	37.500	0.00	0.00	0.00	3.33
94	95	5.528043	ACTACAATCAACATGCACCAAAA	57.472	34.783	0.00	0.00	0.00	2.44
129	251	1.670295	CAATACATACCTTGCAGCGCA	59.330	47.619	11.47	0.00	36.47	6.09
156	278	4.697756	CGGGGAAGCGCTGGAACA	62.698	66.667	12.58	0.00	0.00	3.18
287	409	2.092291	GCACGCGATGGAGTTTCGA	61.092	57.895	15.93	0.00	38.88	3.71
314	436	1.602920	CGCTGAACTAGATATGCCGCA	60.603	52.381	0.00	0.00	0.00	5.69
315	437	2.693069	GCTGAACTAGATATGCCGCAT	58.307	47.619	11.38	11.38	0.00	4.73
316	438	2.414481	GCTGAACTAGATATGCCGCATG	59.586	50.000	16.40	1.06	0.00	4.06
336	458	3.714963	CGGTTTTTACGCGCCGGT	61.715	61.111	5.73	0.00	40.45	5.28
342	464	2.992607	TTTTACGCGCCGGTTGGAGT	62.993	55.000	5.73	3.52	37.39	3.85
356	478	3.429960	GGTTGGAGTCACTATACCGGTTC	60.430	52.174	15.04	0.06	0.00	3.62
375	497	4.174129	GCGCGCGCTAAAATGGGT	62.174	61.111	44.38	0.00	38.26	4.51
388	510	0.892063	AATGGGTAATTTTGCGGCGT	59.108	45.000	9.37	0.00	0.00	5.68
390	512	1.153920	GGGTAATTTTGCGGCGTGG	60.154	57.895	9.37	0.00	0.00	4.94
391	513	1.582461	GGTAATTTTGCGGCGTGGT	59.418	52.632	9.37	0.00	0.00	4.16
401	523	2.027460	GGCGTGGTGCTTGTTTGG	59.973	61.111	0.00	0.00	45.43	3.28
402	524	2.658268	GCGTGGTGCTTGTTTGGC	60.658	61.111	0.00	0.00	41.73	4.52
413	535	4.999939	GTTTGGCGCGGCTGTTGG	63.000	66.667	33.23	0.00	0.00	3.77
427	549	2.349886	GCTGTTGGAGATGCTCTAAACG	59.650	50.000	0.00	0.00	33.06	3.60
460	582	2.284039	TGGTGCGGCCCACTACTA	60.284	61.111	19.69	0.72	44.08	1.82
531	1663	1.070105	TCGCGCGCCCCTTAATAAT	59.930	52.632	27.95	0.00	0.00	1.28
588	1720	0.966179	AAACCAATTGGGCCGTTCTC	59.034	50.000	27.89	0.00	42.05	2.87
589	1721	0.898326	AACCAATTGGGCCGTTCTCC	60.898	55.000	27.89	0.00	42.05	3.71
593	1748	2.536997	AATTGGGCCGTTCTCCCTCG	62.537	60.000	0.00	0.00	44.23	4.63
651	1806	0.993470	ACCCTAGACCTCGAGACAGT	59.007	55.000	15.71	2.73	0.00	3.55
654	1809	2.356330	CCCTAGACCTCGAGACAGTTCT	60.356	54.545	15.71	9.48	33.37	3.01
699	1858	1.811266	CGCTGATCCACAAGACGGG	60.811	63.158	0.00	0.00	0.00	5.28
700	1859	1.450312	GCTGATCCACAAGACGGGG	60.450	63.158	0.00	0.00	0.00	5.73
701	1860	1.983224	CTGATCCACAAGACGGGGT	59.017	57.895	0.00	0.00	0.00	4.95
702	1861	0.391661	CTGATCCACAAGACGGGGTG	60.392	60.000	0.00	0.00	34.82	4.61
706	1865	2.032071	CACAAGACGGGGTGGACC	59.968	66.667	0.00	0.00	39.11	4.46
726	1885	2.124768	TGGAGGATGCCACCAGGA	59.875	61.111	0.00	0.00	39.27	3.86
727	1886	1.997311	TGGAGGATGCCACCAGGAG	60.997	63.158	0.00	0.00	39.27	3.69
728	1887	2.750657	GGAGGATGCCACCAGGAGG	61.751	68.421	0.00	0.00	42.21	4.30
729	1888	1.690633	GAGGATGCCACCAGGAGGA	60.691	63.158	7.20	0.00	38.69	3.71
730	1889	1.692042	AGGATGCCACCAGGAGGAG	60.692	63.158	7.20	0.00	38.69	3.69
736	1895	4.371699	CACCAGGAGGAGGAGGAG	57.628	66.667	0.00	0.00	38.69	3.69
737	1896	1.382420	CACCAGGAGGAGGAGGAGG	60.382	68.421	0.00	0.00	38.69	4.30
738	1897	1.547755	ACCAGGAGGAGGAGGAGGA	60.548	63.158	0.00	0.00	38.69	3.71
739	1898	1.232792	CCAGGAGGAGGAGGAGGAG	59.767	68.421	0.00	0.00	36.89	3.69
740	1899	1.232792	CAGGAGGAGGAGGAGGAGG	59.767	68.421	0.00	0.00	0.00	4.30
880	2045	0.034896	CTACCGTGGCTTGTGAGGTT	59.965	55.000	0.00	0.00	36.49	3.50
881	2046	0.470766	TACCGTGGCTTGTGAGGTTT	59.529	50.000	0.00	0.00	36.49	3.27
882	2047	1.101049	ACCGTGGCTTGTGAGGTTTG	61.101	55.000	0.00	0.00	0.00	2.93
883	2048	1.008538	CGTGGCTTGTGAGGTTTGC	60.009	57.895	0.00	0.00	0.00	3.68
884	2049	1.447317	CGTGGCTTGTGAGGTTTGCT	61.447	55.000	0.00	0.00	0.00	3.91
885	2050	1.604604	GTGGCTTGTGAGGTTTGCTA	58.395	50.000	0.00	0.00	0.00	3.49
886	2051	1.953686	GTGGCTTGTGAGGTTTGCTAA	59.046	47.619	0.00	0.00	0.00	3.09
920	2085	3.118445	CCTCATCCTTCTTCCAGTCTTCC	60.118	52.174	0.00	0.00	0.00	3.46
931	2096	4.061131	TCCAGTCTTCCATCCAGAACTA	57.939	45.455	0.00	0.00	0.00	2.24
964	2129	2.927553	AAATCGTCTCTGCCATTTGC	57.072	45.000	0.00	0.00	41.77	3.68
1195	2367	3.537580	TGTGTCCGTAATTTATCTGGGC	58.462	45.455	0.00	0.00	0.00	5.36
1231	2403	1.825474	TCGACCTCAATCTCCAGTTCC	59.175	52.381	0.00	0.00	0.00	3.62
1275	2447	2.090524	GCTTGAACAATGCTGCGGC	61.091	57.895	11.65	11.65	39.26	6.53
1388	2566	2.104572	GAGTGGACTGTGCTGCCTCA	62.105	60.000	0.00	0.00	0.00	3.86
1542	2738	6.322456	TGTCTATCTACTCATCAGAAACTGGG	59.678	42.308	0.00	0.00	31.51	4.45
1581	2777	0.035343	GTAAGTGGGCCTCTGGAACC	60.035	60.000	9.21	0.00	0.00	3.62
1780	2992	5.128205	TGTATGCTTGGAGGATTGAGAATG	58.872	41.667	0.00	0.00	0.00	2.67
1852	3067	3.433306	AGTGGGCACTAAAGCATACAA	57.567	42.857	0.00	0.00	40.43	2.41
1883	3098	7.254252	CGTTTTAAAATTGTTCACAAGGCATCA	60.254	33.333	3.52	0.00	39.47	3.07
1918	3133	6.533730	TCCTATTCCTATACCATGTTTGCAG	58.466	40.000	0.00	0.00	0.00	4.41
1956	3171	8.188799	TGTAATGTGATTTTCGTTACCAACAAA	58.811	29.630	0.00	0.00	36.82	2.83
2004	3219	3.932710	TGGATAATCAGAAAGTGCGTGTC	59.067	43.478	0.00	0.00	0.00	3.67
2273	3503	6.097356	GGTAAATTGGTAAAGCTTAGTTGCC	58.903	40.000	0.00	0.00	0.00	4.52
2304	3534	7.283127	TGAACCTAGTCATTCAATCTATTTGCC	59.717	37.037	0.20	0.00	35.16	4.52
2495	3732	5.857471	TGCCAAATATTCATTTCTCCCTG	57.143	39.130	0.00	0.00	31.82	4.45
2555	3792	8.887717	CCTAGGAAACATAGTTCTTTCATCTTG	58.112	37.037	1.05	0.00	0.00	3.02
2579	3816	1.353091	GTGGTCAAGGGAAGAGGACT	58.647	55.000	0.00	0.00	0.00	3.85
2670	3908	6.851609	TGCATACAATAAGTTCACCATTCAC	58.148	36.000	0.00	0.00	0.00	3.18
2691	3929	2.434702	CCACTATCACTTACACTCCCCC	59.565	54.545	0.00	0.00	0.00	5.40
2786	4024	5.822519	AGATTGTTAAATTGATAGCTCGCCA	59.177	36.000	0.00	0.00	0.00	5.69
2853	4091	8.161425	ACCATAATGTTACCTCACAGTACTTTT	58.839	33.333	0.00	0.00	30.44	2.27
2879	4117	1.480954	CCGTACTGTCTACCCAGCATT	59.519	52.381	0.00	0.00	35.83	3.56
2954	4192	0.110823	ACTTTTGCGCGCTCTTTACG	60.111	50.000	33.29	15.55	0.00	3.18
2990	4228	6.039382	CAGGACACCCTTTATTTAGCAATACC	59.961	42.308	0.00	0.00	42.02	2.73
3001	4239	4.465632	TTAGCAATACCACACGAGACAT	57.534	40.909	0.00	0.00	0.00	3.06
3006	4244	4.032900	GCAATACCACACGAGACATGTTAG	59.967	45.833	0.00	0.00	0.00	2.34

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
19	20	5.705902	TGAGTTCGTCGTATGATTCTTTCA	58.294	37.500	0.00	0.00	39.12	2.69
21	22	6.565234	AGATGAGTTCGTCGTATGATTCTTT	58.435	36.000	0.00	0.00	36.99	2.52
94	95	7.776969	AGGTATGTATTGCTCAAACTTCATGAT	59.223	33.333	0.00	0.00	0.00	2.45
150	272	1.303236	CCATCCGGCAACTGTTCCA	60.303	57.895	0.00	0.00	0.00	3.53
206	328	4.373116	TCGCTCGCAACTCACCCC	62.373	66.667	0.00	0.00	0.00	4.95
207	329	2.811317	CTCGCTCGCAACTCACCC	60.811	66.667	0.00	0.00	0.00	4.61
208	330	3.482783	GCTCGCTCGCAACTCACC	61.483	66.667	0.00	0.00	0.00	4.02
287	409	4.796231	CTAGTTCAGCGCGCGGGT	62.796	66.667	33.06	17.47	0.00	5.28
320	442	1.726672	CAACCGGCGCGTAAAAACC	60.727	57.895	8.43	0.00	0.00	3.27
334	456	2.105766	ACCGGTATAGTGACTCCAACC	58.894	52.381	4.49	0.00	0.00	3.77
336	458	2.762327	GGAACCGGTATAGTGACTCCAA	59.238	50.000	8.00	0.00	0.00	3.53
342	464	1.729276	CGCGGAACCGGTATAGTGA	59.271	57.895	8.00	0.00	40.19	3.41
375	497	1.081108	GCACCACGCCGCAAAATTA	60.081	52.632	0.00	0.00	32.94	1.40
388	510	4.263209	CGCGCCAAACAAGCACCA	62.263	61.111	0.00	0.00	0.00	4.17
401	523	3.869272	CATCTCCAACAGCCGCGC	61.869	66.667	0.00	0.00	0.00	6.86
402	524	3.869272	GCATCTCCAACAGCCGCG	61.869	66.667	0.00	0.00	0.00	6.46
427	549	2.673326	GCACCAGTACCCTAGTTCGTTC	60.673	54.545	0.00	0.00	0.00	3.95
460	582	2.049063	GCTCGTCAACACGGAGCT	60.049	61.111	5.09	0.00	46.70	4.09
559	1691	2.534990	CCAATTGGTTTCCAGCCCTAA	58.465	47.619	16.90	0.00	33.81	2.69
699	1858	2.687566	ATCCTCCACCGGTCCACC	60.688	66.667	2.59	0.00	0.00	4.61
700	1859	2.584608	CATCCTCCACCGGTCCAC	59.415	66.667	2.59	0.00	0.00	4.02
701	1860	3.399181	GCATCCTCCACCGGTCCA	61.399	66.667	2.59	0.00	0.00	4.02
702	1861	4.176752	GGCATCCTCCACCGGTCC	62.177	72.222	2.59	0.00	0.00	4.46
703	1862	3.399181	TGGCATCCTCCACCGGTC	61.399	66.667	2.59	0.00	0.00	4.79
725	1884	0.996762	TCCTCCTCCTCCTCCTCCTC	60.997	65.000	0.00	0.00	0.00	3.71
726	1885	0.998945	CTCCTCCTCCTCCTCCTCCT	60.999	65.000	0.00	0.00	0.00	3.69
727	1886	1.541672	CTCCTCCTCCTCCTCCTCC	59.458	68.421	0.00	0.00	0.00	4.30
728	1887	0.996762	TCCTCCTCCTCCTCCTCCTC	60.997	65.000	0.00	0.00	0.00	3.71
729	1888	0.998945	CTCCTCCTCCTCCTCCTCCT	60.999	65.000	0.00	0.00	0.00	3.69
730	1889	1.541672	CTCCTCCTCCTCCTCCTCC	59.458	68.421	0.00	0.00	0.00	4.30
731	1890	0.996762	TCCTCCTCCTCCTCCTCCTC	60.997	65.000	0.00	0.00	0.00	3.71
732	1891	0.998945	CTCCTCCTCCTCCTCCTCCT	60.999	65.000	0.00	0.00	0.00	3.69
733	1892	1.541672	CTCCTCCTCCTCCTCCTCC	59.458	68.421	0.00	0.00	0.00	4.30
734	1893	0.996762	TCCTCCTCCTCCTCCTCCTC	60.997	65.000	0.00	0.00	0.00	3.71
735	1894	0.998945	CTCCTCCTCCTCCTCCTCCT	60.999	65.000	0.00	0.00	0.00	3.69
736	1895	1.541672	CTCCTCCTCCTCCTCCTCC	59.458	68.421	0.00	0.00	0.00	4.30
737	1896	0.996762	TCCTCCTCCTCCTCCTCCTC	60.997	65.000	0.00	0.00	0.00	3.71
738	1897	0.998945	CTCCTCCTCCTCCTCCTCCT	60.999	65.000	0.00	0.00	0.00	3.69
739	1898	1.541672	CTCCTCCTCCTCCTCCTCC	59.458	68.421	0.00	0.00	0.00	4.30
740	1899	1.541672	CCTCCTCCTCCTCCTCCTC	59.458	68.421	0.00	0.00	0.00	3.71
882	2047	0.885150	GAGGCGGGGTAGCAATTAGC	60.885	60.000	0.00	0.00	46.19	3.09
883	2048	0.468226	TGAGGCGGGGTAGCAATTAG	59.532	55.000	0.00	0.00	39.27	1.73
884	2049	1.071699	GATGAGGCGGGGTAGCAATTA	59.928	52.381	0.00	0.00	39.27	1.40
885	2050	0.179018	GATGAGGCGGGGTAGCAATT	60.179	55.000	0.00	0.00	39.27	2.32
886	2051	1.451936	GATGAGGCGGGGTAGCAAT	59.548	57.895	0.00	0.00	39.27	3.56
920	2085	9.720769	TTAGTTTTAGGTTTCTAGTTCTGGATG	57.279	33.333	0.00	0.00	0.00	3.51
931	2096	7.117956	GCAGAGACGATTTAGTTTTAGGTTTCT	59.882	37.037	0.00	0.00	0.00	2.52
964	2129	3.309682	TGTTGTTTCTGCTTCTTCTCGTG	59.690	43.478	0.00	0.00	0.00	4.35
1231	2403	0.091344	CGTTTGTAGTTCTCGCGCAG	59.909	55.000	8.75	4.17	0.00	5.18
1275	2447	2.047274	TCGCAAAGGAGAAGGCCG	60.047	61.111	0.00	0.00	0.00	6.13
1388	2566	7.706179	CGATGCCTTGAACCAAAAATTGTATAT	59.294	33.333	0.00	0.00	0.00	0.86
1455	2651	2.032071	ACAAAGCGGGAGGGAACG	59.968	61.111	0.00	0.00	0.00	3.95
1542	2738	0.033504	TCTGAACAGAAGTCCACCGC	59.966	55.000	1.79	0.00	33.91	5.68
1581	2777	2.941064	CCCTGCATGTCTATTCACAGTG	59.059	50.000	0.00	0.00	0.00	3.66
1812	3027	7.062957	CCCACTTTCCATTAATGTAATCCTCT	58.937	38.462	14.25	0.00	0.00	3.69
1852	3067	7.042791	CCTTGTGAACAATTTTAAAACGCTCAT	60.043	33.333	1.97	0.00	35.02	2.90
1918	3133	6.949352	AATCACATTACAATCTGGATGGAC	57.051	37.500	0.00	0.00	0.00	4.02
2004	3219	5.152623	TGGATTGTGTAGAAGTGGAGAAG	57.847	43.478	0.00	0.00	0.00	2.85
2304	3534	7.042119	TGCGACAATAACCAGTAATACATGATG	60.042	37.037	0.00	0.00	0.00	3.07
2495	3732	9.463443	AGAACTGTCTTACAAATGCATAAAAAC	57.537	29.630	0.00	0.00	0.00	2.43
2555	3792	2.623416	CCTCTTCCCTTGACCACAAAAC	59.377	50.000	0.00	0.00	35.49	2.43
2670	3908	2.434702	GGGGGAGTGTAAGTGATAGTGG	59.565	54.545	0.00	0.00	0.00	4.00
2780	4018	6.867662	AAATAGATTTAGTTGGATGGCGAG	57.132	37.500	0.00	0.00	0.00	5.03
2782	4020	7.479980	TGAAAAATAGATTTAGTTGGATGGCG	58.520	34.615	0.00	0.00	0.00	5.69
2853	4091	1.895131	GGGTAGACAGTACGGGACAAA	59.105	52.381	0.00	0.00	0.00	2.83
2879	4117	5.265191	AGGAACTCAATACAGTCTAGCAGA	58.735	41.667	0.00	0.00	0.00	4.26
2924	4162	4.268884	AGCGCGCAAAAGTAAAAATGAAAA	59.731	33.333	35.10	0.00	0.00	2.29
2929	4167	3.282831	AGAGCGCGCAAAAGTAAAAAT	57.717	38.095	35.10	7.44	0.00	1.82
2942	4180	1.057361	GCTTGTCGTAAAGAGCGCG	59.943	57.895	0.00	0.00	0.00	6.86
2954	4192	1.968540	GTGTCCTGCCCAGCTTGTC	60.969	63.158	0.00	0.00	0.00	3.18
2990	4228	3.665323	GCAAAGCTAACATGTCTCGTGTG	60.665	47.826	0.00	0.00	33.54	3.82
3001	4239	3.449746	AGTAATGGGGCAAAGCTAACA	57.550	42.857	0.00	0.00	0.00	2.41
3006	4244	3.257127	TGTTACAAGTAATGGGGCAAAGC	59.743	43.478	0.00	0.00	0.00	3.51

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.