Multiple sequence alignment - TraesCS1A01G036600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G036600 chr1A 100.000 1246 0 0 875 2120 20372045 20370800 0.000000e+00 2302.0
1 TraesCS1A01G036600 chr1A 100.000 465 0 0 1 465 20372919 20372455 0.000000e+00 859.0
2 TraesCS1A01G036600 chr1D 90.895 1263 78 20 890 2120 18396525 18395268 0.000000e+00 1661.0
3 TraesCS1A01G036600 chr1D 94.828 348 18 0 118 465 18397596 18397249 5.140000e-151 544.0
4 TraesCS1A01G036600 chr1D 96.644 149 5 0 1972 2120 18391908 18391760 4.520000e-62 248.0
5 TraesCS1A01G036600 chr1D 91.379 116 10 0 3 118 451853224 451853109 2.180000e-35 159.0
6 TraesCS1A01G036600 chr1B 92.109 773 37 12 875 1636 27150209 27149450 0.000000e+00 1068.0
7 TraesCS1A01G036600 chr1B 93.561 497 25 4 1628 2120 27149424 27148931 0.000000e+00 734.0
8 TraesCS1A01G036600 chr1B 94.136 324 19 0 118 441 27150780 27150457 5.260000e-136 494.0
9 TraesCS1A01G036600 chr1B 90.678 118 11 0 1 118 621463149 621463032 7.830000e-35 158.0
10 TraesCS1A01G036600 chr3D 88.415 164 14 5 1960 2120 381307008 381306847 2.150000e-45 193.0
11 TraesCS1A01G036600 chr6A 85.405 185 21 5 1936 2120 74672752 74672574 9.990000e-44 187.0
12 TraesCS1A01G036600 chr7D 91.736 121 8 1 1 121 391357462 391357344 1.300000e-37 167.0
13 TraesCS1A01G036600 chr7D 93.220 59 4 0 1857 1915 28214940 28214882 1.040000e-13 87.9
14 TraesCS1A01G036600 chr5D 92.373 118 8 1 1 118 138063791 138063907 1.300000e-37 167.0
15 TraesCS1A01G036600 chr5D 86.813 91 12 0 1850 1940 269731872 269731962 3.720000e-18 102.0
16 TraesCS1A01G036600 chr6D 90.323 124 11 1 1 123 5730094 5729971 6.050000e-36 161.0
17 TraesCS1A01G036600 chr6D 90.909 66 5 1 1844 1908 464777238 464777303 1.040000e-13 87.9
18 TraesCS1A01G036600 chr2A 89.683 126 13 0 1 126 456177186 456177061 6.050000e-36 161.0
19 TraesCS1A01G036600 chr2A 84.615 91 14 0 1849 1939 533899668 533899578 8.060000e-15 91.6
20 TraesCS1A01G036600 chr7B 91.379 116 10 0 2005 2120 93092106 93091991 2.180000e-35 159.0
21 TraesCS1A01G036600 chr4D 90.678 118 11 0 1 118 11121969 11122086 7.830000e-35 158.0
22 TraesCS1A01G036600 chr4D 90.678 118 11 0 1 118 11138521 11138638 7.830000e-35 158.0
23 TraesCS1A01G036600 chr4D 93.258 89 5 1 1857 1944 64349612 64349524 1.710000e-26 130.0
24 TraesCS1A01G036600 chr2D 90.678 118 11 0 1 118 410179041 410178924 7.830000e-35 158.0
25 TraesCS1A01G036600 chr3A 91.011 89 8 0 2031 2119 494722177 494722265 1.030000e-23 121.0
26 TraesCS1A01G036600 chr3B 92.683 82 6 0 1858 1939 828147173 828147254 3.700000e-23 119.0
27 TraesCS1A01G036600 chr2B 87.097 93 11 1 1854 1945 99268114 99268206 1.030000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G036600 chr1A 20370800 20372919 2119 True 1580.500000 2302 100.000000 1 2120 2 chr1A.!!$R1 2119
1 TraesCS1A01G036600 chr1D 18391760 18397596 5836 True 817.666667 1661 94.122333 118 2120 3 chr1D.!!$R2 2002
2 TraesCS1A01G036600 chr1B 27148931 27150780 1849 True 765.333333 1068 93.268667 118 2120 3 chr1B.!!$R2 2002

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
26 27 0.324943 TCACCAAGAGCCTGCTTACC 59.675 55.0 0.0 0.0 0.0 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1521 1843 0.457035 CGCCAGCATTTGTAGCCAAT 59.543 50.0 0.0 0.0 0.0 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.456627 TCTTCACCAAGAGCCTGCT 58.543 52.632 0.00 0.00 33.38 4.24
23 24 0.767375 TCTTCACCAAGAGCCTGCTT 59.233 50.000 0.00 0.00 33.38 3.91
24 25 1.977854 TCTTCACCAAGAGCCTGCTTA 59.022 47.619 0.00 0.00 33.38 3.09
25 26 2.079925 CTTCACCAAGAGCCTGCTTAC 58.920 52.381 0.00 0.00 0.00 2.34
26 27 0.324943 TCACCAAGAGCCTGCTTACC 59.675 55.000 0.00 0.00 0.00 2.85
27 28 0.326264 CACCAAGAGCCTGCTTACCT 59.674 55.000 0.00 0.00 0.00 3.08
28 29 1.068121 ACCAAGAGCCTGCTTACCTT 58.932 50.000 0.00 0.00 0.00 3.50
29 30 1.425448 ACCAAGAGCCTGCTTACCTTT 59.575 47.619 0.00 0.00 0.00 3.11
30 31 2.158460 ACCAAGAGCCTGCTTACCTTTT 60.158 45.455 0.00 0.00 0.00 2.27
31 32 2.893489 CCAAGAGCCTGCTTACCTTTTT 59.107 45.455 0.00 0.00 0.00 1.94
96 97 8.986929 AATTTATTTCTTATAGCCAGCTGACT 57.013 30.769 17.39 12.46 0.00 3.41
97 98 8.614469 ATTTATTTCTTATAGCCAGCTGACTC 57.386 34.615 17.39 3.75 0.00 3.36
98 99 5.620738 ATTTCTTATAGCCAGCTGACTCA 57.379 39.130 17.39 0.00 0.00 3.41
99 100 5.420725 TTTCTTATAGCCAGCTGACTCAA 57.579 39.130 17.39 6.06 0.00 3.02
100 101 4.392921 TCTTATAGCCAGCTGACTCAAC 57.607 45.455 17.39 0.00 0.00 3.18
101 102 4.026744 TCTTATAGCCAGCTGACTCAACT 58.973 43.478 17.39 5.02 0.00 3.16
102 103 2.977772 ATAGCCAGCTGACTCAACTC 57.022 50.000 17.39 0.00 0.00 3.01
103 104 1.930251 TAGCCAGCTGACTCAACTCT 58.070 50.000 17.39 1.60 0.00 3.24
104 105 1.930251 AGCCAGCTGACTCAACTCTA 58.070 50.000 17.39 0.00 0.00 2.43
105 106 2.465813 AGCCAGCTGACTCAACTCTAT 58.534 47.619 17.39 0.00 0.00 1.98
106 107 2.836981 AGCCAGCTGACTCAACTCTATT 59.163 45.455 17.39 0.00 0.00 1.73
107 108 2.935201 GCCAGCTGACTCAACTCTATTG 59.065 50.000 17.39 0.00 0.00 1.90
108 109 3.618507 GCCAGCTGACTCAACTCTATTGT 60.619 47.826 17.39 0.00 0.00 2.71
109 110 4.382040 GCCAGCTGACTCAACTCTATTGTA 60.382 45.833 17.39 0.00 0.00 2.41
110 111 5.105752 CCAGCTGACTCAACTCTATTGTAC 58.894 45.833 17.39 0.00 0.00 2.90
111 112 5.105554 CCAGCTGACTCAACTCTATTGTACT 60.106 44.000 17.39 0.00 0.00 2.73
112 113 6.393990 CAGCTGACTCAACTCTATTGTACTT 58.606 40.000 8.42 0.00 0.00 2.24
113 114 6.309980 CAGCTGACTCAACTCTATTGTACTTG 59.690 42.308 8.42 0.00 0.00 3.16
114 115 5.062809 GCTGACTCAACTCTATTGTACTTGC 59.937 44.000 0.00 0.00 0.00 4.01
115 116 6.346477 TGACTCAACTCTATTGTACTTGCT 57.654 37.500 0.00 0.00 0.00 3.91
116 117 6.390721 TGACTCAACTCTATTGTACTTGCTC 58.609 40.000 0.00 0.00 0.00 4.26
194 195 6.545666 TCAAAGGATTAGCACTGAAGAAACAA 59.454 34.615 0.00 0.00 0.00 2.83
237 238 5.163612 GGAAGATTGTCATGGGCTTAACTTC 60.164 44.000 0.00 0.00 0.00 3.01
274 275 2.918345 GCACAGTGCCCGCATTCAA 61.918 57.895 15.27 0.00 37.42 2.69
297 298 4.602107 TGCATTCTTGGAAGATTCATCCA 58.398 39.130 6.53 6.53 45.09 3.41
343 344 4.703897 GATCTATCGAGATCGGAGATCCT 58.296 47.826 23.41 7.57 46.64 3.24
355 356 2.649190 GGAGATCCTTTTCTTGGAGGC 58.351 52.381 0.00 0.00 36.99 4.70
370 371 0.459489 GAGGCACAAAACAACCTGCA 59.541 50.000 0.00 0.00 30.95 4.41
452 453 2.575735 TCCAGCATGTTCCTCCACAATA 59.424 45.455 0.00 0.00 0.00 1.90
462 463 5.104277 TGTTCCTCCACAATATAATCCCGTT 60.104 40.000 0.00 0.00 0.00 4.44
1152 1462 1.543941 CTGTTCGCCGCAGATCGATC 61.544 60.000 17.91 17.91 41.67 3.69
1154 1464 3.824117 TTCGCCGCAGATCGATCGG 62.824 63.158 19.66 19.66 45.46 4.18
1161 1471 1.600413 CGCAGATCGATCGGTGATCAA 60.600 52.381 28.10 0.00 43.73 2.57
1182 1492 1.798223 TCGTTTGTTTCAGCCGATCAG 59.202 47.619 0.00 0.00 0.00 2.90
1281 1599 2.423446 TGTAGTGCATGCATGGATGT 57.577 45.000 25.64 18.05 0.00 3.06
1319 1637 0.593263 GCATTGCGCTGCCTATGTTC 60.593 55.000 9.73 0.00 36.10 3.18
1355 1673 2.401583 TGATCGGTTGATGGGTTGAG 57.598 50.000 0.00 0.00 34.09 3.02
1356 1674 1.905894 TGATCGGTTGATGGGTTGAGA 59.094 47.619 0.00 0.00 34.09 3.27
1362 1680 3.505680 CGGTTGATGGGTTGAGATTTTCA 59.494 43.478 0.00 0.00 0.00 2.69
1423 1744 3.519930 GAGGAGAGGACGCCGGAC 61.520 72.222 5.05 0.00 40.86 4.79
1446 1767 4.067896 CACTCAGCTACAAAGGTTGATGT 58.932 43.478 0.00 0.00 37.42 3.06
1453 1774 2.949447 ACAAAGGTTGATGTGCTTCCT 58.051 42.857 0.00 0.00 0.00 3.36
1538 1864 3.872511 TCAATTGGCTACAAATGCTGG 57.127 42.857 5.42 0.00 40.55 4.85
1573 1899 4.569966 ACACGCATGATTCTGAAGAAGATC 59.430 41.667 0.00 0.00 37.48 2.75
1574 1900 3.801050 ACGCATGATTCTGAAGAAGATCG 59.199 43.478 0.00 0.00 37.48 3.69
1575 1901 4.047142 CGCATGATTCTGAAGAAGATCGA 58.953 43.478 0.00 0.00 37.48 3.59
1577 1903 5.332430 CGCATGATTCTGAAGAAGATCGAAG 60.332 44.000 0.00 0.00 37.48 3.79
1578 1904 5.752472 GCATGATTCTGAAGAAGATCGAAGA 59.248 40.000 0.00 0.00 38.19 2.87
1579 1905 6.424509 GCATGATTCTGAAGAAGATCGAAGAT 59.575 38.462 0.00 0.00 38.41 2.40
1582 1910 9.695526 ATGATTCTGAAGAAGATCGAAGATAAG 57.304 33.333 0.00 0.00 38.41 1.73
1695 2062 3.004734 GGACATGGTTTCTGTTCTTGTGG 59.995 47.826 0.00 0.00 0.00 4.17
1701 2068 4.638421 TGGTTTCTGTTCTTGTGGTTGTAG 59.362 41.667 0.00 0.00 0.00 2.74
1844 2212 8.553459 AGATTATCTCACACGATTTTGACTTT 57.447 30.769 0.00 0.00 0.00 2.66
1899 2268 0.179081 GCGGCGGACCTCTTCTAAAT 60.179 55.000 9.78 0.00 0.00 1.40
1901 2270 1.134788 CGGCGGACCTCTTCTAAATGT 60.135 52.381 0.00 0.00 0.00 2.71
1975 5850 8.763984 TTTCCCCCGCTTTATATTGTATAAAA 57.236 30.769 4.34 0.00 0.00 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 0.767375 AAGCAGGCTCTTGGTGAAGA 59.233 50.000 0.00 0.00 36.72 2.87
5 6 2.079925 GTAAGCAGGCTCTTGGTGAAG 58.920 52.381 8.77 0.00 0.00 3.02
6 7 1.271379 GGTAAGCAGGCTCTTGGTGAA 60.271 52.381 8.77 0.00 0.00 3.18
7 8 0.324943 GGTAAGCAGGCTCTTGGTGA 59.675 55.000 8.77 0.00 0.00 4.02
8 9 0.326264 AGGTAAGCAGGCTCTTGGTG 59.674 55.000 8.77 0.00 0.00 4.17
9 10 1.068121 AAGGTAAGCAGGCTCTTGGT 58.932 50.000 8.77 0.00 0.00 3.67
10 11 2.206576 AAAGGTAAGCAGGCTCTTGG 57.793 50.000 8.77 0.00 0.00 3.61
71 72 8.986929 AGTCAGCTGGCTATAAGAAATAAATT 57.013 30.769 21.80 0.00 0.00 1.82
72 73 8.213679 TGAGTCAGCTGGCTATAAGAAATAAAT 58.786 33.333 23.29 0.00 0.00 1.40
73 74 7.564793 TGAGTCAGCTGGCTATAAGAAATAAA 58.435 34.615 23.29 0.00 0.00 1.40
74 75 7.124573 TGAGTCAGCTGGCTATAAGAAATAA 57.875 36.000 23.29 0.00 0.00 1.40
75 76 6.731292 TGAGTCAGCTGGCTATAAGAAATA 57.269 37.500 23.29 0.00 0.00 1.40
76 77 5.620738 TGAGTCAGCTGGCTATAAGAAAT 57.379 39.130 23.29 0.00 0.00 2.17
77 78 5.046304 AGTTGAGTCAGCTGGCTATAAGAAA 60.046 40.000 23.29 6.39 0.00 2.52
78 79 4.467795 AGTTGAGTCAGCTGGCTATAAGAA 59.532 41.667 23.29 6.47 0.00 2.52
79 80 4.026744 AGTTGAGTCAGCTGGCTATAAGA 58.973 43.478 23.29 2.53 0.00 2.10
80 81 4.099266 AGAGTTGAGTCAGCTGGCTATAAG 59.901 45.833 23.29 0.00 0.00 1.73
81 82 4.026744 AGAGTTGAGTCAGCTGGCTATAA 58.973 43.478 23.29 16.67 0.00 0.98
82 83 3.636679 AGAGTTGAGTCAGCTGGCTATA 58.363 45.455 23.29 10.97 0.00 1.31
83 84 2.465813 AGAGTTGAGTCAGCTGGCTAT 58.534 47.619 23.29 7.73 0.00 2.97
84 85 1.930251 AGAGTTGAGTCAGCTGGCTA 58.070 50.000 23.29 3.12 0.00 3.93
85 86 1.930251 TAGAGTTGAGTCAGCTGGCT 58.070 50.000 23.48 23.48 0.00 4.75
86 87 2.935201 CAATAGAGTTGAGTCAGCTGGC 59.065 50.000 14.85 11.28 0.00 4.85
87 88 4.199432 ACAATAGAGTTGAGTCAGCTGG 57.801 45.455 14.85 1.61 0.00 4.85
88 89 5.960113 AGTACAATAGAGTTGAGTCAGCTG 58.040 41.667 14.85 7.63 0.00 4.24
89 90 6.393990 CAAGTACAATAGAGTTGAGTCAGCT 58.606 40.000 9.51 9.51 0.00 4.24
90 91 5.062809 GCAAGTACAATAGAGTTGAGTCAGC 59.937 44.000 0.00 0.00 0.00 4.26
91 92 6.393990 AGCAAGTACAATAGAGTTGAGTCAG 58.606 40.000 0.00 0.00 0.00 3.51
92 93 6.209589 AGAGCAAGTACAATAGAGTTGAGTCA 59.790 38.462 0.00 0.00 0.00 3.41
93 94 6.626302 AGAGCAAGTACAATAGAGTTGAGTC 58.374 40.000 0.00 0.00 0.00 3.36
94 95 6.597832 AGAGCAAGTACAATAGAGTTGAGT 57.402 37.500 0.00 0.00 0.00 3.41
95 96 7.221838 GCTTAGAGCAAGTACAATAGAGTTGAG 59.778 40.741 0.00 0.00 41.89 3.02
96 97 7.036220 GCTTAGAGCAAGTACAATAGAGTTGA 58.964 38.462 0.00 0.00 41.89 3.18
97 98 7.038659 AGCTTAGAGCAAGTACAATAGAGTTG 58.961 38.462 2.47 0.00 45.56 3.16
98 99 7.176589 AGCTTAGAGCAAGTACAATAGAGTT 57.823 36.000 2.47 0.00 45.56 3.01
99 100 6.783708 AGCTTAGAGCAAGTACAATAGAGT 57.216 37.500 2.47 0.00 45.56 3.24
100 101 6.019156 GCAAGCTTAGAGCAAGTACAATAGAG 60.019 42.308 0.00 0.00 45.56 2.43
101 102 5.812642 GCAAGCTTAGAGCAAGTACAATAGA 59.187 40.000 0.00 0.00 45.56 1.98
102 103 5.582269 TGCAAGCTTAGAGCAAGTACAATAG 59.418 40.000 7.44 0.00 45.56 1.73
103 104 5.487433 TGCAAGCTTAGAGCAAGTACAATA 58.513 37.500 7.44 0.00 45.56 1.90
104 105 4.326826 TGCAAGCTTAGAGCAAGTACAAT 58.673 39.130 7.44 0.00 45.56 2.71
105 106 3.738982 TGCAAGCTTAGAGCAAGTACAA 58.261 40.909 7.44 0.00 45.56 2.41
106 107 3.329386 CTGCAAGCTTAGAGCAAGTACA 58.671 45.455 10.73 0.00 45.56 2.90
130 131 0.538287 ACCAGCTCCTCCACAAAAGC 60.538 55.000 0.00 0.00 34.95 3.51
131 132 2.859165 TACCAGCTCCTCCACAAAAG 57.141 50.000 0.00 0.00 0.00 2.27
133 134 2.814097 GCTTTACCAGCTCCTCCACAAA 60.814 50.000 0.00 0.00 46.27 2.83
194 195 7.020827 TCTTCCACAAGATAGACATTCCTTT 57.979 36.000 0.00 0.00 33.38 3.11
237 238 4.155826 TGTGCGATCTTGGGAAATTGTAAG 59.844 41.667 0.00 0.00 0.00 2.34
274 275 5.205821 TGGATGAATCTTCCAAGAATGCAT 58.794 37.500 14.55 0.00 40.29 3.96
297 298 5.263599 TCTGGAATGGTGCAACTATGAAAT 58.736 37.500 2.04 0.00 36.85 2.17
340 341 2.746279 TTGTGCCTCCAAGAAAAGGA 57.254 45.000 0.00 0.00 34.35 3.36
343 344 4.249661 GTTGTTTTGTGCCTCCAAGAAAA 58.750 39.130 0.00 0.00 0.00 2.29
355 356 4.718858 CATGAATGCAGGTTGTTTTGTG 57.281 40.909 0.00 0.00 0.00 3.33
370 371 4.689612 AAGGTACGGTAGATGCATGAAT 57.310 40.909 2.46 0.00 0.00 2.57
411 412 4.040339 TGGACAAGATTGAGTTGACAGCTA 59.960 41.667 0.00 0.00 0.00 3.32
1142 1452 2.140065 TTGATCACCGATCGATCTGC 57.860 50.000 22.43 3.49 41.51 4.26
1152 1462 4.140518 TGAAACAAACGATTGATCACCG 57.859 40.909 12.79 13.32 38.94 4.94
1154 1464 3.914364 GGCTGAAACAAACGATTGATCAC 59.086 43.478 12.79 9.84 38.94 3.06
1161 1471 2.416547 CTGATCGGCTGAAACAAACGAT 59.583 45.455 0.00 0.00 45.70 3.73
1182 1492 5.791336 AAAAGATCCAAAACAGAAGGGAC 57.209 39.130 0.00 0.00 31.04 4.46
1207 1517 2.914756 AATGCATCATCGGCAGGGCA 62.915 55.000 0.00 0.00 45.68 5.36
1208 1518 2.138656 GAATGCATCATCGGCAGGGC 62.139 60.000 0.00 0.00 45.68 5.19
1211 1521 1.572941 CCGAATGCATCATCGGCAG 59.427 57.895 23.05 4.42 45.68 4.85
1231 1541 1.377725 CGCTGGAATCTGCAACCCT 60.378 57.895 0.00 0.00 37.65 4.34
1281 1599 7.650834 CAATGCATGCATCATGAATGAATAA 57.349 32.000 32.25 0.00 39.03 1.40
1319 1637 3.187227 CGATCAATCCCTCCTAAAATGCG 59.813 47.826 0.00 0.00 0.00 4.73
1382 1700 1.681666 CCTGCCTCCAGAGAAGCAA 59.318 57.895 0.00 0.00 41.77 3.91
1386 1704 1.920325 CACCCCTGCCTCCAGAGAA 60.920 63.158 0.00 0.00 41.77 2.87
1390 1708 2.930019 TCACACCCCTGCCTCCAG 60.930 66.667 0.00 0.00 38.85 3.86
1423 1744 3.126001 TCAACCTTTGTAGCTGAGTGG 57.874 47.619 0.00 0.00 0.00 4.00
1446 1767 3.576078 TTGTGGAAGAGAAAGGAAGCA 57.424 42.857 0.00 0.00 0.00 3.91
1453 1774 5.660864 ACCTTTTCCATTTGTGGAAGAGAAA 59.339 36.000 22.25 9.50 46.90 2.52
1521 1843 0.457035 CGCCAGCATTTGTAGCCAAT 59.543 50.000 0.00 0.00 0.00 3.16
1538 1864 2.322422 GCGTGTGATCAGCATCGC 59.678 61.111 18.57 18.57 42.04 4.58
1582 1910 9.255304 AGATCAGCGTCTTATTTAATCTTCTTC 57.745 33.333 0.00 0.00 0.00 2.87
1695 2062 3.999001 GGGTAAACCAGCTACACTACAAC 59.001 47.826 0.81 0.00 39.85 3.32
1740 2107 8.664798 CAGCCCAGCTTTTATTTTTATTTAACC 58.335 33.333 0.00 0.00 36.40 2.85
1844 2212 3.187637 GCGCTATTTAATACAATGGGCGA 59.812 43.478 14.93 0.00 39.68 5.54
1886 2255 6.979238 ACGTGCTATAACATTTAGAAGAGGTC 59.021 38.462 0.00 0.00 0.00 3.85
1975 5850 7.711846 TGTTCAATTTGTAATGCAGTAGTTGT 58.288 30.769 0.00 0.00 0.00 3.32
1980 5855 6.155827 GGCTTGTTCAATTTGTAATGCAGTA 58.844 36.000 0.00 0.00 0.00 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.