Multiple sequence alignment - TraesCS1A01G036200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G036200 chr1A 100.000 3709 0 0 1 3709 20155626 20159334 0.000000e+00 6850.0
1 TraesCS1A01G036200 chr1A 93.625 251 15 1 3340 3589 143817051 143817301 1.260000e-99 374.0
2 TraesCS1A01G036200 chr1A 79.919 493 71 10 20 498 20099034 20099512 1.650000e-88 337.0
3 TraesCS1A01G036200 chr1A 86.885 61 8 0 2808 2868 73096424 73096484 6.650000e-08 69.4
4 TraesCS1A01G036200 chr1D 90.326 2605 133 34 480 2984 18097061 18099646 0.000000e+00 3304.0
5 TraesCS1A01G036200 chr1D 94.615 650 33 2 3062 3709 18110090 18110739 0.000000e+00 1005.0
6 TraesCS1A01G036200 chr1D 94.290 648 31 3 3062 3707 18116403 18117046 0.000000e+00 987.0
7 TraesCS1A01G036200 chr1D 93.846 650 38 2 3062 3709 18113251 18113900 0.000000e+00 977.0
8 TraesCS1A01G036200 chr1D 94.221 398 21 2 3062 3457 18119566 18119963 1.140000e-169 606.0
9 TraesCS1A01G036200 chr1D 86.653 487 43 4 1 473 18078949 18079427 1.530000e-143 520.0
10 TraesCS1A01G036200 chr1D 91.321 265 20 2 3340 3601 101869480 101869744 3.520000e-95 359.0
11 TraesCS1A01G036200 chr1D 80.325 493 69 10 20 498 18072903 18073381 7.620000e-92 348.0
12 TraesCS1A01G036200 chr1D 94.558 147 7 1 3564 3709 18119962 18120108 3.730000e-55 226.0
13 TraesCS1A01G036200 chr1D 88.421 190 9 7 1700 1889 782777 782601 2.240000e-52 217.0
14 TraesCS1A01G036200 chr1D 81.667 180 29 4 504 681 18767784 18767961 2.980000e-31 147.0
15 TraesCS1A01G036200 chr1D 100.000 32 0 0 2993 3024 18099676 18099707 4.000000e-05 60.2
16 TraesCS1A01G036200 chr1B 91.045 1340 64 25 900 2215 26136051 26134744 0.000000e+00 1759.0
17 TraesCS1A01G036200 chr1B 85.380 513 44 11 52 550 26137021 26136526 1.540000e-138 503.0
18 TraesCS1A01G036200 chr1B 94.855 311 14 2 2503 2812 26134735 26134426 5.570000e-133 484.0
19 TraesCS1A01G036200 chr1B 83.645 428 54 11 1664 2087 4075287 4075702 4.490000e-104 388.0
20 TraesCS1A01G036200 chr1B 83.083 266 42 3 585 849 26136521 26136258 4.790000e-59 239.0
21 TraesCS1A01G036200 chr1B 85.388 219 27 4 1896 2110 3569811 3569594 4.820000e-54 222.0
22 TraesCS1A01G036200 chrUn 91.832 453 24 5 2356 2804 325811792 325811349 1.460000e-173 619.0
23 TraesCS1A01G036200 chrUn 91.648 455 24 5 1700 2154 325812229 325811789 5.260000e-173 617.0
24 TraesCS1A01G036200 chr4A 84.007 544 53 23 2808 3342 474748501 474749019 3.330000e-135 492.0
25 TraesCS1A01G036200 chr4A 79.524 210 39 4 504 711 665457326 665457119 2.980000e-31 147.0
26 TraesCS1A01G036200 chr7A 82.375 539 59 21 2812 3342 246260123 246260633 1.580000e-118 436.0
27 TraesCS1A01G036200 chr7A 80.220 182 32 3 559 738 611561743 611561922 2.320000e-27 134.0
28 TraesCS1A01G036200 chr7A 90.769 65 6 0 2814 2878 51350235 51350171 1.840000e-13 87.9
29 TraesCS1A01G036200 chr2A 81.481 513 60 25 2840 3345 724295287 724294803 4.490000e-104 388.0
30 TraesCS1A01G036200 chr5A 93.254 252 15 2 3340 3590 436200614 436200364 1.630000e-98 370.0
31 TraesCS1A01G036200 chr6D 93.227 251 15 2 3340 3589 449179804 449179555 5.850000e-98 368.0
32 TraesCS1A01G036200 chr4D 92.885 253 16 2 3340 3590 478256489 478256237 2.100000e-97 366.0
33 TraesCS1A01G036200 chr4D 81.466 464 49 18 2840 3296 509166558 509166991 2.740000e-91 346.0
34 TraesCS1A01G036200 chr3A 92.857 252 15 3 3339 3589 210579055 210579304 2.720000e-96 363.0
35 TraesCS1A01G036200 chr6A 81.915 376 30 11 2813 3187 74374032 74374370 2.180000e-72 283.0
36 TraesCS1A01G036200 chr7B 81.651 218 38 2 515 731 571712486 571712702 2.940000e-41 180.0
37 TraesCS1A01G036200 chr7D 82.320 181 30 2 502 681 22384627 22384806 4.960000e-34 156.0
38 TraesCS1A01G036200 chr7D 83.562 146 24 0 504 649 484426774 484426919 1.800000e-28 137.0
39 TraesCS1A01G036200 chr7D 77.660 188 37 2 551 738 531200138 531200320 3.920000e-20 110.0
40 TraesCS1A01G036200 chr5D 82.320 181 29 3 503 681 469517183 469517362 1.780000e-33 154.0
41 TraesCS1A01G036200 chr5B 86.429 140 17 2 504 643 544782008 544782145 6.420000e-33 152.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G036200 chr1A 20155626 20159334 3708 False 6850.00 6850 100.00000 1 3709 1 chr1A.!!$F2 3708
1 TraesCS1A01G036200 chr1D 18097061 18099707 2646 False 1682.10 3304 95.16300 480 3024 2 chr1D.!!$F5 2544
2 TraesCS1A01G036200 chr1D 18110090 18120108 10018 False 760.20 1005 94.30600 3062 3709 5 chr1D.!!$F6 647
3 TraesCS1A01G036200 chr1B 26134426 26137021 2595 True 746.25 1759 88.59075 52 2812 4 chr1B.!!$R2 2760
4 TraesCS1A01G036200 chrUn 325811349 325812229 880 True 618.00 619 91.74000 1700 2804 2 chrUn.!!$R1 1104
5 TraesCS1A01G036200 chr4A 474748501 474749019 518 False 492.00 492 84.00700 2808 3342 1 chr4A.!!$F1 534
6 TraesCS1A01G036200 chr7A 246260123 246260633 510 False 436.00 436 82.37500 2812 3342 1 chr7A.!!$F1 530

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
664 679 0.175760 ACCAATCATCGGACAGTCGG 59.824 55.0 1.59 1.59 0.0 4.79 F
1962 2197 0.736325 CTCGCCGGATTCAGAAACGT 60.736 55.0 5.05 0.00 0.0 3.99 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2145 2380 1.301716 TGCCCGCAGAAGAGTCAAC 60.302 57.895 0.00 0.00 0.0 3.18 R
3556 9990 0.397941 TGGCTCCTAGGTGCATATGC 59.602 55.000 31.19 21.09 42.5 3.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.183810 ACTAGTTTTAGTTGGGTTGCTAGT 57.816 37.500 0.00 0.00 36.75 2.57
26 27 4.788679 AGTTTTAGTTGGGTTGCTAGTGT 58.211 39.130 0.00 0.00 0.00 3.55
27 28 4.820173 AGTTTTAGTTGGGTTGCTAGTGTC 59.180 41.667 0.00 0.00 0.00 3.67
28 29 4.425180 TTTAGTTGGGTTGCTAGTGTCA 57.575 40.909 0.00 0.00 0.00 3.58
29 30 2.256117 AGTTGGGTTGCTAGTGTCAC 57.744 50.000 0.00 0.00 0.00 3.67
31 32 2.172717 AGTTGGGTTGCTAGTGTCACTT 59.827 45.455 11.54 0.00 0.00 3.16
32 33 2.949644 GTTGGGTTGCTAGTGTCACTTT 59.050 45.455 11.54 0.00 0.00 2.66
33 34 2.846193 TGGGTTGCTAGTGTCACTTTC 58.154 47.619 11.54 4.12 0.00 2.62
34 35 2.171659 TGGGTTGCTAGTGTCACTTTCA 59.828 45.455 11.54 6.77 0.00 2.69
36 37 3.467803 GGTTGCTAGTGTCACTTTCAGT 58.532 45.455 11.54 0.00 0.00 3.41
49 50 4.000331 ACTTTCAGTGACCATCTGACAG 58.000 45.455 0.00 0.00 42.15 3.51
50 51 3.389329 ACTTTCAGTGACCATCTGACAGT 59.611 43.478 1.59 8.35 43.54 3.55
58 59 4.516698 GTGACCATCTGACAGTCATTTTGT 59.483 41.667 2.97 0.00 42.14 2.83
81 82 5.594317 GTGAAACAGGGAATATAAGGTGCAT 59.406 40.000 0.00 0.00 36.32 3.96
97 98 2.758423 GTGCATAACCCCGGAAATCTTT 59.242 45.455 0.73 0.00 0.00 2.52
98 99 2.757868 TGCATAACCCCGGAAATCTTTG 59.242 45.455 0.73 0.00 0.00 2.77
172 174 5.907866 TTTCCCGATTGGTAAGGAAAATC 57.092 39.130 0.00 0.00 43.57 2.17
173 175 4.577988 TCCCGATTGGTAAGGAAAATCA 57.422 40.909 0.00 0.00 34.77 2.57
174 176 4.924625 TCCCGATTGGTAAGGAAAATCAA 58.075 39.130 0.00 0.00 34.77 2.57
175 177 5.326069 TCCCGATTGGTAAGGAAAATCAAA 58.674 37.500 0.00 0.00 34.77 2.69
178 180 7.616150 TCCCGATTGGTAAGGAAAATCAAATTA 59.384 33.333 0.00 0.00 34.77 1.40
179 181 7.704899 CCCGATTGGTAAGGAAAATCAAATTAC 59.295 37.037 0.00 0.00 31.88 1.89
180 182 8.247562 CCGATTGGTAAGGAAAATCAAATTACA 58.752 33.333 0.00 0.00 31.88 2.41
231 233 9.731819 GTAGAACTCATCATCTTTACGACAATA 57.268 33.333 0.00 0.00 0.00 1.90
261 263 4.454728 ACAGTTGCAAAACATTGACAGT 57.545 36.364 0.00 0.00 0.00 3.55
262 264 4.175516 ACAGTTGCAAAACATTGACAGTG 58.824 39.130 0.00 0.00 0.00 3.66
275 277 3.386768 TGACAGTGTGCTTTAGAGTCC 57.613 47.619 0.00 0.00 0.00 3.85
291 293 1.117150 GTCCAGTTCCCGCTACCATA 58.883 55.000 0.00 0.00 0.00 2.74
294 296 2.367567 TCCAGTTCCCGCTACCATAATC 59.632 50.000 0.00 0.00 0.00 1.75
306 308 5.437060 GCTACCATAATCTTGAAGAACCCA 58.563 41.667 0.00 0.00 0.00 4.51
334 349 8.494433 AGCCATTAAGATTATCTACACTCCAAA 58.506 33.333 0.00 0.00 0.00 3.28
346 361 2.366266 ACACTCCAAACATGCAAGCATT 59.634 40.909 4.52 0.00 33.90 3.56
351 366 2.028839 CCAAACATGCAAGCATTCCTGA 60.029 45.455 4.52 0.00 33.90 3.86
355 370 3.362706 ACATGCAAGCATTCCTGAGATT 58.637 40.909 4.52 0.00 33.90 2.40
357 372 3.361281 TGCAAGCATTCCTGAGATTCT 57.639 42.857 0.00 0.00 0.00 2.40
362 377 9.478524 ATGCAAGCATTCCTGAGATTCTCAGTA 62.479 40.741 31.80 23.05 43.58 2.74
369 384 3.232213 TGAGATTCTCAGTACAACGGC 57.768 47.619 12.38 0.00 35.39 5.68
426 441 6.158520 TCTCAAAATCATTCCCTCTATGTCCA 59.841 38.462 0.00 0.00 0.00 4.02
427 442 6.914665 TCAAAATCATTCCCTCTATGTCCAT 58.085 36.000 0.00 0.00 0.00 3.41
438 453 7.918076 TCCCTCTATGTCCATTATTACCATTC 58.082 38.462 0.00 0.00 0.00 2.67
490 505 3.905968 TGCCATCCATGAAGATGTCATT 58.094 40.909 10.04 0.00 45.13 2.57
500 515 8.680001 TCCATGAAGATGTCATTTTTATCAGTG 58.320 33.333 0.00 0.00 45.13 3.66
524 539 5.223382 CACACTATTAGAATCGCACCCTAG 58.777 45.833 0.00 0.00 0.00 3.02
528 543 1.461091 TAGAATCGCACCCTAGGCCG 61.461 60.000 2.05 5.81 0.00 6.13
529 544 2.762459 AATCGCACCCTAGGCCGA 60.762 61.111 16.33 16.33 35.08 5.54
605 620 1.880027 GTTGTTCTCGGCAAAGACCAT 59.120 47.619 0.00 0.00 0.00 3.55
639 654 5.308825 CCTCTCAGGTACACAGAAAATTGT 58.691 41.667 0.00 0.00 0.00 2.71
645 660 5.465390 CAGGTACACAGAAAATTGTCGAGAA 59.535 40.000 0.00 0.00 0.00 2.87
650 665 5.299279 ACACAGAAAATTGTCGAGAACCAAT 59.701 36.000 0.00 0.00 32.83 3.16
663 678 1.927174 GAACCAATCATCGGACAGTCG 59.073 52.381 0.00 0.00 0.00 4.18
664 679 0.175760 ACCAATCATCGGACAGTCGG 59.824 55.000 1.59 1.59 0.00 4.79
693 709 2.928801 TGCTGAGAGCCAAACTGTAA 57.071 45.000 0.00 0.00 41.51 2.41
731 747 4.434713 GTGACTTCACAGTTGTTGGTTT 57.565 40.909 4.43 0.00 45.75 3.27
767 783 2.852449 TGTCTTCACGGCCAACATTAA 58.148 42.857 2.24 0.00 0.00 1.40
803 819 2.038952 AGATTGTGTGCAGGCTTACTCA 59.961 45.455 0.00 0.00 0.00 3.41
814 830 7.609918 TGTGCAGGCTTACTCATATTTTTCTTA 59.390 33.333 0.00 0.00 0.00 2.10
817 833 9.455847 GCAGGCTTACTCATATTTTTCTTATTG 57.544 33.333 0.00 0.00 0.00 1.90
1218 1429 2.778299 TGCATTTCTCACGCCTTTACT 58.222 42.857 0.00 0.00 0.00 2.24
1224 1435 3.232213 TCTCACGCCTTTACTGATCAC 57.768 47.619 0.00 0.00 0.00 3.06
1256 1467 4.815269 CTGGAGAACCTGTAACTTCAGAG 58.185 47.826 0.00 0.00 38.98 3.35
1259 1470 5.544176 TGGAGAACCTGTAACTTCAGAGAAT 59.456 40.000 0.00 0.00 37.61 2.40
1262 1473 7.122948 GGAGAACCTGTAACTTCAGAGAATAGA 59.877 40.741 0.00 0.00 37.61 1.98
1373 1588 5.604758 TGCTAACTCATAAGCATGACTCT 57.395 39.130 0.00 0.00 43.56 3.24
1552 1772 3.064545 CCATGTCCTTCTTTCGAGATTGC 59.935 47.826 0.00 0.00 0.00 3.56
1781 2005 1.950909 AGAACCAGACTCGATCGATCC 59.049 52.381 19.78 13.09 0.00 3.36
1787 2011 3.058570 CCAGACTCGATCGATCCAACTAG 60.059 52.174 19.78 6.73 0.00 2.57
1789 2013 2.290916 GACTCGATCGATCCAACTAGCA 59.709 50.000 19.78 0.00 0.00 3.49
1818 2042 2.027561 CCAAGGAGTGGGTTCGTGAATA 60.028 50.000 0.00 0.00 44.64 1.75
1962 2197 0.736325 CTCGCCGGATTCAGAAACGT 60.736 55.000 5.05 0.00 0.00 3.99
2145 2380 6.097915 TCTAGAGTTGTTGGTAGGAAACAG 57.902 41.667 0.00 0.00 38.67 3.16
2167 2402 0.884704 GACTCTTCTGCGGGCACAAA 60.885 55.000 0.00 0.00 0.00 2.83
2199 2435 5.301551 ACACAGGCATATCTTGTTGTGAAAA 59.698 36.000 9.15 0.00 41.53 2.29
2252 2488 5.007332 GTGGATTGAATTACTTTACCGCGAT 59.993 40.000 8.23 0.00 0.00 4.58
2363 2599 2.430332 AGCTGTATCTCACCTCTGAAGC 59.570 50.000 0.00 0.00 0.00 3.86
2736 2985 3.062763 GAGCAGGATCAATGTATGGTCG 58.937 50.000 0.00 0.00 40.31 4.79
2901 3181 4.265904 TGTCCTGTCTTTAAGATTCGCA 57.734 40.909 0.00 0.00 0.00 5.10
3140 9556 1.021390 AGGAAGGCACAGCGATTTCG 61.021 55.000 0.00 0.00 43.27 3.46
3147 9563 1.069227 GCACAGCGATTTCGTCCTTTT 60.069 47.619 1.55 0.00 42.22 2.27
3156 9575 6.027749 GCGATTTCGTCCTTTTGTGATTAAT 58.972 36.000 1.55 0.00 42.22 1.40
3157 9576 7.065324 AGCGATTTCGTCCTTTTGTGATTAATA 59.935 33.333 1.55 0.00 42.22 0.98
3158 9577 7.694784 GCGATTTCGTCCTTTTGTGATTAATAA 59.305 33.333 1.55 0.00 42.22 1.40
3190 9610 6.701400 TCTTTTTCTTGCCTAAAAGAATGTGC 59.299 34.615 7.36 0.00 43.56 4.57
3366 9799 2.290641 ACGATGTTCTTTGTGGCTTGTC 59.709 45.455 0.00 0.00 0.00 3.18
3373 9806 6.872920 TGTTCTTTGTGGCTTGTCTAAAAAT 58.127 32.000 0.00 0.00 0.00 1.82
3422 9856 8.462016 AGTTGTAATGAAGCATAGAAATTGTCC 58.538 33.333 0.00 0.00 0.00 4.02
3438 9872 5.897377 ATTGTCCTTTATACACAAGCCAC 57.103 39.130 0.00 0.00 33.64 5.01
3464 9898 6.563398 AAAACCTCGTTTTTCATCGAAAAC 57.437 33.333 1.50 0.00 42.11 2.43
3465 9899 5.494632 AACCTCGTTTTTCATCGAAAACT 57.505 34.783 8.39 0.00 43.77 2.66
3466 9900 5.494632 ACCTCGTTTTTCATCGAAAACTT 57.505 34.783 8.39 0.00 43.77 2.66
3467 9901 5.886992 ACCTCGTTTTTCATCGAAAACTTT 58.113 33.333 8.39 0.00 43.77 2.66
3468 9902 5.741982 ACCTCGTTTTTCATCGAAAACTTTG 59.258 36.000 8.39 0.00 43.77 2.77
3469 9903 5.741982 CCTCGTTTTTCATCGAAAACTTTGT 59.258 36.000 8.39 0.00 43.77 2.83
3470 9904 6.291060 CCTCGTTTTTCATCGAAAACTTTGTG 60.291 38.462 8.39 0.00 43.77 3.33
3471 9905 5.003967 TCGTTTTTCATCGAAAACTTTGTGC 59.996 36.000 8.39 0.00 43.77 4.57
3472 9906 5.220117 CGTTTTTCATCGAAAACTTTGTGCA 60.220 36.000 8.39 0.00 43.77 4.57
3473 9907 5.694674 TTTTCATCGAAAACTTTGTGCAC 57.305 34.783 10.75 10.75 36.73 4.57
3474 9908 2.980586 TCATCGAAAACTTTGTGCACG 58.019 42.857 13.13 0.00 0.00 5.34
3475 9909 1.447938 CATCGAAAACTTTGTGCACGC 59.552 47.619 13.13 0.00 0.00 5.34
3476 9910 0.448197 TCGAAAACTTTGTGCACGCA 59.552 45.000 13.13 0.00 0.00 5.24
3477 9911 0.565679 CGAAAACTTTGTGCACGCAC 59.434 50.000 15.20 15.20 46.33 5.34
3488 9922 3.253371 GTGCACGCACATATAATGTCC 57.747 47.619 17.03 0.00 45.53 4.02
3496 9930 6.749216 CGCACATATAATGTCCGGATATAC 57.251 41.667 14.71 0.00 40.59 1.47
3497 9931 6.270064 CGCACATATAATGTCCGGATATACA 58.730 40.000 14.71 5.01 40.59 2.29
3498 9932 6.198403 CGCACATATAATGTCCGGATATACAC 59.802 42.308 14.71 0.00 40.59 2.90
3499 9933 6.198403 GCACATATAATGTCCGGATATACACG 59.802 42.308 14.71 5.24 42.70 4.49
3500 9934 6.198403 CACATATAATGTCCGGATATACACGC 59.802 42.308 14.71 0.00 42.70 5.34
3501 9935 2.060326 AATGTCCGGATATACACGCG 57.940 50.000 14.71 3.53 0.00 6.01
3502 9936 1.241165 ATGTCCGGATATACACGCGA 58.759 50.000 15.93 0.00 0.00 5.87
3503 9937 0.589708 TGTCCGGATATACACGCGAG 59.410 55.000 15.93 7.88 0.00 5.03
3504 9938 0.870393 GTCCGGATATACACGCGAGA 59.130 55.000 15.93 0.00 0.00 4.04
3505 9939 1.467734 GTCCGGATATACACGCGAGAT 59.532 52.381 15.93 5.15 0.00 2.75
3506 9940 2.095364 GTCCGGATATACACGCGAGATT 60.095 50.000 15.93 0.02 0.00 2.40
3507 9941 2.555325 TCCGGATATACACGCGAGATTT 59.445 45.455 15.93 0.00 0.00 2.17
3508 9942 3.005050 TCCGGATATACACGCGAGATTTT 59.995 43.478 15.93 0.00 0.00 1.82
3509 9943 3.739300 CCGGATATACACGCGAGATTTTT 59.261 43.478 15.93 0.00 0.00 1.94
3510 9944 4.376008 CCGGATATACACGCGAGATTTTTG 60.376 45.833 15.93 0.00 0.00 2.44
3511 9945 4.208460 CGGATATACACGCGAGATTTTTGT 59.792 41.667 15.93 7.40 0.00 2.83
3512 9946 5.276678 CGGATATACACGCGAGATTTTTGTT 60.277 40.000 15.93 0.00 0.00 2.83
3513 9947 6.127403 GGATATACACGCGAGATTTTTGTTC 58.873 40.000 15.93 0.00 0.00 3.18
3514 9948 2.294479 ACACGCGAGATTTTTGTTCG 57.706 45.000 15.93 0.00 37.40 3.95
3515 9949 1.070175 ACACGCGAGATTTTTGTTCGG 60.070 47.619 15.93 0.00 35.05 4.30
3516 9950 1.193650 CACGCGAGATTTTTGTTCGGA 59.806 47.619 15.93 0.00 35.05 4.55
3517 9951 1.868498 ACGCGAGATTTTTGTTCGGAA 59.132 42.857 15.93 0.00 35.05 4.30
3518 9952 2.482721 ACGCGAGATTTTTGTTCGGAAT 59.517 40.909 15.93 0.00 35.05 3.01
3519 9953 3.058501 ACGCGAGATTTTTGTTCGGAATT 60.059 39.130 15.93 0.00 35.05 2.17
3520 9954 3.911964 CGCGAGATTTTTGTTCGGAATTT 59.088 39.130 0.00 0.00 35.05 1.82
3521 9955 4.381566 CGCGAGATTTTTGTTCGGAATTTT 59.618 37.500 0.00 0.00 35.05 1.82
3522 9956 5.108027 CGCGAGATTTTTGTTCGGAATTTTT 60.108 36.000 0.00 0.00 35.05 1.94
3523 9957 6.289160 GCGAGATTTTTGTTCGGAATTTTTC 58.711 36.000 0.00 0.00 35.05 2.29
3524 9958 6.074569 GCGAGATTTTTGTTCGGAATTTTTCA 60.075 34.615 0.00 0.00 35.05 2.69
3525 9959 7.493313 CGAGATTTTTGTTCGGAATTTTTCAG 58.507 34.615 0.00 0.00 0.00 3.02
3526 9960 7.167468 CGAGATTTTTGTTCGGAATTTTTCAGT 59.833 33.333 0.00 0.00 0.00 3.41
3527 9961 8.716646 AGATTTTTGTTCGGAATTTTTCAGTT 57.283 26.923 0.00 0.00 0.00 3.16
3528 9962 9.161629 AGATTTTTGTTCGGAATTTTTCAGTTT 57.838 25.926 0.00 0.00 0.00 2.66
3529 9963 9.767684 GATTTTTGTTCGGAATTTTTCAGTTTT 57.232 25.926 0.00 0.00 0.00 2.43
3531 9965 9.600646 TTTTTGTTCGGAATTTTTCAGTTTTTC 57.399 25.926 0.00 0.00 0.00 2.29
3532 9966 7.891183 TTGTTCGGAATTTTTCAGTTTTTCA 57.109 28.000 0.00 0.00 0.00 2.69
3533 9967 7.891183 TGTTCGGAATTTTTCAGTTTTTCAA 57.109 28.000 0.00 0.00 0.00 2.69
3534 9968 8.311650 TGTTCGGAATTTTTCAGTTTTTCAAA 57.688 26.923 0.00 0.00 0.00 2.69
3535 9969 8.774586 TGTTCGGAATTTTTCAGTTTTTCAAAA 58.225 25.926 0.00 0.00 0.00 2.44
3536 9970 9.767684 GTTCGGAATTTTTCAGTTTTTCAAAAT 57.232 25.926 0.00 0.00 31.57 1.82
3537 9971 9.766277 TTCGGAATTTTTCAGTTTTTCAAAATG 57.234 25.926 0.00 0.00 30.89 2.32
3538 9972 8.940952 TCGGAATTTTTCAGTTTTTCAAAATGT 58.059 25.926 0.00 0.00 30.89 2.71
3539 9973 8.997960 CGGAATTTTTCAGTTTTTCAAAATGTG 58.002 29.630 0.00 0.00 30.89 3.21
3540 9974 9.838975 GGAATTTTTCAGTTTTTCAAAATGTGT 57.161 25.926 0.00 0.00 30.89 3.72
3554 9988 9.703892 TTTCAAAATGTGTATTTAGACAATGGG 57.296 29.630 0.00 0.00 35.50 4.00
3555 9989 8.415950 TCAAAATGTGTATTTAGACAATGGGT 57.584 30.769 0.00 0.00 35.50 4.51
3556 9990 8.303156 TCAAAATGTGTATTTAGACAATGGGTG 58.697 33.333 0.00 0.00 35.50 4.61
3557 9991 5.835113 ATGTGTATTTAGACAATGGGTGC 57.165 39.130 0.00 0.00 32.98 5.01
3558 9992 4.657013 TGTGTATTTAGACAATGGGTGCA 58.343 39.130 0.00 0.00 0.00 4.57
3559 9993 5.260424 TGTGTATTTAGACAATGGGTGCAT 58.740 37.500 0.00 0.00 0.00 3.96
3560 9994 6.418946 TGTGTATTTAGACAATGGGTGCATA 58.581 36.000 0.00 0.00 0.00 3.14
3561 9995 7.059788 TGTGTATTTAGACAATGGGTGCATAT 58.940 34.615 0.00 0.00 0.00 1.78
3562 9996 7.013178 TGTGTATTTAGACAATGGGTGCATATG 59.987 37.037 0.00 0.00 0.00 1.78
3591 10025 0.246086 GCCATTGCCAATTTCCGACA 59.754 50.000 0.00 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 4.788679 ACACTAGCAACCCAACTAAAACT 58.211 39.130 0.00 0.00 0.00 2.66
5 6 4.577283 TGACACTAGCAACCCAACTAAAAC 59.423 41.667 0.00 0.00 0.00 2.43
7 8 4.131596 GTGACACTAGCAACCCAACTAAA 58.868 43.478 0.00 0.00 0.00 1.85
8 9 3.389983 AGTGACACTAGCAACCCAACTAA 59.610 43.478 6.24 0.00 0.00 2.24
9 10 2.969950 AGTGACACTAGCAACCCAACTA 59.030 45.455 6.24 0.00 0.00 2.24
10 11 1.768870 AGTGACACTAGCAACCCAACT 59.231 47.619 6.24 0.00 0.00 3.16
12 13 3.211045 GAAAGTGACACTAGCAACCCAA 58.789 45.455 8.91 0.00 0.00 4.12
13 14 2.171659 TGAAAGTGACACTAGCAACCCA 59.828 45.455 8.91 0.00 0.00 4.51
14 15 2.808543 CTGAAAGTGACACTAGCAACCC 59.191 50.000 8.91 0.00 0.00 4.11
31 32 2.965147 TGACTGTCAGATGGTCACTGAA 59.035 45.455 6.36 0.00 44.29 3.02
32 33 2.597455 TGACTGTCAGATGGTCACTGA 58.403 47.619 6.36 0.00 41.26 3.41
33 34 3.606595 ATGACTGTCAGATGGTCACTG 57.393 47.619 16.46 0.00 41.75 3.66
34 35 4.630644 AAATGACTGTCAGATGGTCACT 57.369 40.909 16.46 0.00 41.75 3.41
36 37 4.516321 CACAAAATGACTGTCAGATGGTCA 59.484 41.667 16.46 9.79 42.85 4.02
37 38 4.756642 TCACAAAATGACTGTCAGATGGTC 59.243 41.667 16.46 0.00 29.99 4.02
38 39 4.717877 TCACAAAATGACTGTCAGATGGT 58.282 39.130 16.46 8.06 29.99 3.55
39 40 5.694231 TTCACAAAATGACTGTCAGATGG 57.306 39.130 16.46 7.44 36.92 3.51
40 41 6.497437 TGTTTCACAAAATGACTGTCAGATG 58.503 36.000 16.46 15.46 36.92 2.90
41 42 6.238842 CCTGTTTCACAAAATGACTGTCAGAT 60.239 38.462 16.46 4.92 36.92 2.90
42 43 5.066375 CCTGTTTCACAAAATGACTGTCAGA 59.934 40.000 16.46 3.98 36.92 3.27
43 44 5.276270 CCTGTTTCACAAAATGACTGTCAG 58.724 41.667 16.46 5.01 36.92 3.51
45 46 4.338118 TCCCTGTTTCACAAAATGACTGTC 59.662 41.667 0.00 0.00 36.92 3.51
46 47 4.277476 TCCCTGTTTCACAAAATGACTGT 58.723 39.130 0.00 0.00 36.92 3.55
47 48 4.916983 TCCCTGTTTCACAAAATGACTG 57.083 40.909 0.00 0.00 36.92 3.51
48 49 7.781324 ATATTCCCTGTTTCACAAAATGACT 57.219 32.000 0.00 0.00 36.92 3.41
49 50 9.573133 CTTATATTCCCTGTTTCACAAAATGAC 57.427 33.333 0.00 0.00 36.92 3.06
50 51 8.748412 CCTTATATTCCCTGTTTCACAAAATGA 58.252 33.333 0.00 0.00 34.65 2.57
58 59 5.186256 TGCACCTTATATTCCCTGTTTCA 57.814 39.130 0.00 0.00 0.00 2.69
81 82 3.074836 ACTTCCAAAGATTTCCGGGGTTA 59.925 43.478 0.00 0.00 0.00 2.85
97 98 6.772716 GGAAAGGCATCTAATCAATACTTCCA 59.227 38.462 0.00 0.00 0.00 3.53
98 99 6.073003 CGGAAAGGCATCTAATCAATACTTCC 60.073 42.308 0.00 0.00 0.00 3.46
133 135 5.305386 TCGGGAAATGACAGTCTCATATGAT 59.695 40.000 5.72 0.00 38.82 2.45
139 141 3.599343 CAATCGGGAAATGACAGTCTCA 58.401 45.455 1.31 0.00 0.00 3.27
170 172 7.439381 GCCATTCATCCAGATTGTAATTTGAT 58.561 34.615 0.00 0.00 0.00 2.57
172 174 5.987347 GGCCATTCATCCAGATTGTAATTTG 59.013 40.000 0.00 0.00 0.00 2.32
173 175 5.901276 AGGCCATTCATCCAGATTGTAATTT 59.099 36.000 5.01 0.00 0.00 1.82
174 176 5.461327 AGGCCATTCATCCAGATTGTAATT 58.539 37.500 5.01 0.00 0.00 1.40
175 177 5.070823 AGGCCATTCATCCAGATTGTAAT 57.929 39.130 5.01 0.00 0.00 1.89
178 180 3.202818 TGTAGGCCATTCATCCAGATTGT 59.797 43.478 5.01 0.00 0.00 2.71
179 181 3.824133 TGTAGGCCATTCATCCAGATTG 58.176 45.455 5.01 0.00 0.00 2.67
180 182 4.105217 TGATGTAGGCCATTCATCCAGATT 59.895 41.667 22.70 0.00 37.67 2.40
214 216 5.983720 CGGAAGGTATTGTCGTAAAGATGAT 59.016 40.000 0.00 0.00 0.00 2.45
223 225 2.298163 ACTGTTCGGAAGGTATTGTCGT 59.702 45.455 0.00 0.00 0.00 4.34
231 233 1.757682 TTTGCAACTGTTCGGAAGGT 58.242 45.000 0.00 0.00 0.00 3.50
261 263 2.038557 GGGAACTGGACTCTAAAGCACA 59.961 50.000 0.00 0.00 0.00 4.57
262 264 2.701107 GGGAACTGGACTCTAAAGCAC 58.299 52.381 0.00 0.00 0.00 4.40
275 277 3.753294 AGATTATGGTAGCGGGAACTG 57.247 47.619 0.00 0.00 38.10 3.16
291 293 3.575805 TGGCTTTGGGTTCTTCAAGATT 58.424 40.909 0.00 0.00 0.00 2.40
294 296 5.243730 TCTTAATGGCTTTGGGTTCTTCAAG 59.756 40.000 0.00 0.00 0.00 3.02
306 308 8.494433 TGGAGTGTAGATAATCTTAATGGCTTT 58.506 33.333 0.00 0.00 0.00 3.51
334 349 2.502142 TCTCAGGAATGCTTGCATGT 57.498 45.000 8.98 0.00 0.00 3.21
351 366 1.544691 ACGCCGTTGTACTGAGAATCT 59.455 47.619 0.00 0.00 34.92 2.40
355 370 1.812235 TAGACGCCGTTGTACTGAGA 58.188 50.000 0.00 0.00 0.00 3.27
357 372 1.400113 CGTTAGACGCCGTTGTACTGA 60.400 52.381 0.00 0.00 33.65 3.41
362 377 0.662374 CACTCGTTAGACGCCGTTGT 60.662 55.000 0.00 0.00 42.21 3.32
366 381 1.800315 CCACACTCGTTAGACGCCG 60.800 63.158 0.00 0.00 42.21 6.46
369 384 0.039437 AGTGCCACACTCGTTAGACG 60.039 55.000 0.00 0.00 41.21 4.18
395 410 9.933240 ATAGAGGGAATGATTTTGAGAGAAATT 57.067 29.630 0.00 0.00 29.75 1.82
396 411 9.352191 CATAGAGGGAATGATTTTGAGAGAAAT 57.648 33.333 0.00 0.00 32.16 2.17
397 412 8.331740 ACATAGAGGGAATGATTTTGAGAGAAA 58.668 33.333 0.00 0.00 0.00 2.52
490 505 8.817100 CGATTCTAATAGTGTGCACTGATAAAA 58.183 33.333 19.41 3.73 42.52 1.52
500 515 2.544267 GGGTGCGATTCTAATAGTGTGC 59.456 50.000 0.00 0.00 0.00 4.57
534 549 1.237285 CCCTTTGCCGAGTGTTCCTG 61.237 60.000 0.00 0.00 0.00 3.86
537 552 2.954611 GCCCTTTGCCGAGTGTTC 59.045 61.111 0.00 0.00 0.00 3.18
581 596 2.032808 GTCTTTGCCGAGAACAACTCAC 60.033 50.000 0.00 0.00 45.14 3.51
605 620 0.536687 CCTGAGAGGTATACGCCGGA 60.537 60.000 5.05 0.00 0.00 5.14
627 642 4.811555 TGGTTCTCGACAATTTTCTGTG 57.188 40.909 0.00 0.00 0.00 3.66
639 654 1.822371 TGTCCGATGATTGGTTCTCGA 59.178 47.619 0.00 0.00 33.07 4.04
645 660 0.175760 CCGACTGTCCGATGATTGGT 59.824 55.000 1.55 0.00 0.00 3.67
650 665 0.389817 CTTTGCCGACTGTCCGATGA 60.390 55.000 1.55 0.00 0.00 2.92
693 709 6.206634 TGAAGTCACTTTATTTTGCCGAGAAT 59.793 34.615 0.00 0.00 0.00 2.40
853 869 9.901172 TTCTTTCAAGAAAGTTCTAGTTAACCT 57.099 29.630 18.90 0.00 45.88 3.50
875 891 3.053619 GTGGTGTCCCTTATCCCATTCTT 60.054 47.826 0.00 0.00 0.00 2.52
1011 1213 3.827898 GGAGAGGGCACGACGGAG 61.828 72.222 0.00 0.00 0.00 4.63
1218 1429 7.455953 AGGTTCTCCAGCTAATATATGTGATCA 59.544 37.037 0.00 0.00 35.89 2.92
1224 1435 8.589338 AGTTACAGGTTCTCCAGCTAATATATG 58.411 37.037 0.00 0.00 35.89 1.78
1259 1470 9.162764 GCACAGAAGTAAAATTTACATCCTCTA 57.837 33.333 17.00 0.00 0.00 2.43
1262 1473 8.409358 AAGCACAGAAGTAAAATTTACATCCT 57.591 30.769 17.00 8.30 0.00 3.24
1352 1567 6.045318 TGAAGAGTCATGCTTATGAGTTAGC 58.955 40.000 0.00 0.00 34.59 3.09
1552 1772 7.834068 AGTACTACACATTTATGCAAGTCAG 57.166 36.000 0.00 0.00 0.00 3.51
1781 2005 4.016444 TCCTTGGGCTATTTTGCTAGTTG 58.984 43.478 0.00 0.00 0.00 3.16
1787 2011 1.478105 CCACTCCTTGGGCTATTTTGC 59.522 52.381 0.00 0.00 42.54 3.68
1812 2036 9.428097 TCTGATCAGCATGTATTACATATTCAC 57.572 33.333 18.36 1.88 36.53 3.18
1962 2197 4.956700 AGTGAAGATTCTTCCTCATCGGTA 59.043 41.667 20.87 0.00 0.00 4.02
2145 2380 1.301716 TGCCCGCAGAAGAGTCAAC 60.302 57.895 0.00 0.00 0.00 3.18
2167 2402 5.536161 ACAAGATATGCCTGTGTTTTCTTGT 59.464 36.000 9.03 9.03 44.03 3.16
2348 2584 3.987745 TCTAAGGCTTCAGAGGTGAGAT 58.012 45.455 1.30 0.00 32.98 2.75
2363 2599 6.521151 ACAAGCTGATTTGGAAATCTAAGG 57.479 37.500 12.22 3.11 43.97 2.69
2736 2985 2.032204 CACTCTGCACTTTGTCTTCAGC 60.032 50.000 0.00 0.00 0.00 4.26
2838 3092 9.853555 AGATTTAGATGTGAGATAGCTATTTCG 57.146 33.333 16.95 0.00 0.00 3.46
2901 3181 2.362077 GGAGGCAGAAAAATGTGTGTGT 59.638 45.455 0.00 0.00 0.00 3.72
3042 3344 6.676237 AACAGGCCAACAAAAACATAAAAG 57.324 33.333 5.01 0.00 0.00 2.27
3156 9575 9.877178 TTTTAGGCAAGAAAAAGAACACATTTA 57.123 25.926 0.00 0.00 0.00 1.40
3157 9576 8.785329 TTTTAGGCAAGAAAAAGAACACATTT 57.215 26.923 0.00 0.00 0.00 2.32
3158 9577 8.257306 TCTTTTAGGCAAGAAAAAGAACACATT 58.743 29.630 7.57 0.00 44.53 2.71
3166 9585 6.703165 AGCACATTCTTTTAGGCAAGAAAAAG 59.297 34.615 3.03 5.61 44.18 2.27
3346 9779 2.549754 AGACAAGCCACAAAGAACATCG 59.450 45.455 0.00 0.00 0.00 3.84
3455 9889 1.447938 GCGTGCACAAAGTTTTCGATG 59.552 47.619 18.64 0.00 0.00 3.84
3456 9890 1.064803 TGCGTGCACAAAGTTTTCGAT 59.935 42.857 18.64 0.00 0.00 3.59
3457 9891 0.448197 TGCGTGCACAAAGTTTTCGA 59.552 45.000 18.64 0.00 0.00 3.71
3458 9892 0.565679 GTGCGTGCACAAAGTTTTCG 59.434 50.000 19.45 0.00 45.53 3.46
3468 9902 3.253371 GGACATTATATGTGCGTGCAC 57.747 47.619 17.72 17.72 45.03 4.57
3474 9908 6.198403 CGTGTATATCCGGACATTATATGTGC 59.802 42.308 6.12 0.00 45.03 4.57
3475 9909 6.198403 GCGTGTATATCCGGACATTATATGTG 59.802 42.308 6.12 1.04 45.03 3.21
3477 9911 5.398416 CGCGTGTATATCCGGACATTATATG 59.602 44.000 6.12 4.12 0.00 1.78
3478 9912 5.297527 TCGCGTGTATATCCGGACATTATAT 59.702 40.000 6.12 2.53 0.00 0.86
3479 9913 4.635324 TCGCGTGTATATCCGGACATTATA 59.365 41.667 6.12 2.22 0.00 0.98
3480 9914 3.441222 TCGCGTGTATATCCGGACATTAT 59.559 43.478 6.12 3.39 0.00 1.28
3481 9915 2.813172 TCGCGTGTATATCCGGACATTA 59.187 45.455 6.12 0.00 0.00 1.90
3482 9916 1.610038 TCGCGTGTATATCCGGACATT 59.390 47.619 6.12 0.00 0.00 2.71
3483 9917 1.199327 CTCGCGTGTATATCCGGACAT 59.801 52.381 6.12 2.01 0.00 3.06
3484 9918 0.589708 CTCGCGTGTATATCCGGACA 59.410 55.000 6.12 0.00 0.00 4.02
3485 9919 0.870393 TCTCGCGTGTATATCCGGAC 59.130 55.000 6.12 0.00 0.00 4.79
3486 9920 1.817357 ATCTCGCGTGTATATCCGGA 58.183 50.000 6.61 6.61 0.00 5.14
3487 9921 2.631418 AATCTCGCGTGTATATCCGG 57.369 50.000 5.77 0.00 0.00 5.14
3488 9922 4.208460 ACAAAAATCTCGCGTGTATATCCG 59.792 41.667 5.77 0.00 0.00 4.18
3489 9923 5.652744 ACAAAAATCTCGCGTGTATATCC 57.347 39.130 5.77 0.00 0.00 2.59
3490 9924 5.834135 CGAACAAAAATCTCGCGTGTATATC 59.166 40.000 5.77 0.00 0.00 1.63
3491 9925 5.276678 CCGAACAAAAATCTCGCGTGTATAT 60.277 40.000 5.77 0.00 0.00 0.86
3492 9926 4.031991 CCGAACAAAAATCTCGCGTGTATA 59.968 41.667 5.77 0.00 0.00 1.47
3493 9927 3.181524 CCGAACAAAAATCTCGCGTGTAT 60.182 43.478 5.77 0.00 0.00 2.29
3494 9928 2.156117 CCGAACAAAAATCTCGCGTGTA 59.844 45.455 5.77 0.00 0.00 2.90
3495 9929 1.070175 CCGAACAAAAATCTCGCGTGT 60.070 47.619 5.77 0.00 0.00 4.49
3496 9930 1.193650 TCCGAACAAAAATCTCGCGTG 59.806 47.619 5.77 3.13 0.00 5.34
3497 9931 1.504359 TCCGAACAAAAATCTCGCGT 58.496 45.000 5.77 0.00 0.00 6.01
3498 9932 2.587612 TTCCGAACAAAAATCTCGCG 57.412 45.000 0.00 0.00 0.00 5.87
3499 9933 5.822584 AAAATTCCGAACAAAAATCTCGC 57.177 34.783 0.00 0.00 0.00 5.03
3500 9934 7.167468 ACTGAAAAATTCCGAACAAAAATCTCG 59.833 33.333 0.00 0.00 0.00 4.04
3501 9935 8.352752 ACTGAAAAATTCCGAACAAAAATCTC 57.647 30.769 0.00 0.00 0.00 2.75
3502 9936 8.716646 AACTGAAAAATTCCGAACAAAAATCT 57.283 26.923 0.00 0.00 0.00 2.40
3503 9937 9.767684 AAAACTGAAAAATTCCGAACAAAAATC 57.232 25.926 0.00 0.00 0.00 2.17
3505 9939 9.600646 GAAAAACTGAAAAATTCCGAACAAAAA 57.399 25.926 0.00 0.00 0.00 1.94
3506 9940 8.774586 TGAAAAACTGAAAAATTCCGAACAAAA 58.225 25.926 0.00 0.00 0.00 2.44
3507 9941 8.311650 TGAAAAACTGAAAAATTCCGAACAAA 57.688 26.923 0.00 0.00 0.00 2.83
3508 9942 7.891183 TGAAAAACTGAAAAATTCCGAACAA 57.109 28.000 0.00 0.00 0.00 2.83
3509 9943 7.891183 TTGAAAAACTGAAAAATTCCGAACA 57.109 28.000 0.00 0.00 0.00 3.18
3510 9944 9.767684 ATTTTGAAAAACTGAAAAATTCCGAAC 57.232 25.926 0.00 0.00 30.10 3.95
3511 9945 9.766277 CATTTTGAAAAACTGAAAAATTCCGAA 57.234 25.926 0.00 0.00 31.57 4.30
3512 9946 8.940952 ACATTTTGAAAAACTGAAAAATTCCGA 58.059 25.926 0.00 0.00 31.57 4.55
3513 9947 8.997960 CACATTTTGAAAAACTGAAAAATTCCG 58.002 29.630 0.00 0.00 31.57 4.30
3514 9948 9.838975 ACACATTTTGAAAAACTGAAAAATTCC 57.161 25.926 0.00 0.00 31.57 3.01
3528 9962 9.703892 CCCATTGTCTAAATACACATTTTGAAA 57.296 29.630 0.00 0.00 37.54 2.69
3529 9963 8.865090 ACCCATTGTCTAAATACACATTTTGAA 58.135 29.630 0.00 0.00 37.54 2.69
3530 9964 8.303156 CACCCATTGTCTAAATACACATTTTGA 58.697 33.333 0.00 0.00 35.88 2.69
3531 9965 7.063308 GCACCCATTGTCTAAATACACATTTTG 59.937 37.037 0.00 0.00 35.88 2.44
3532 9966 7.096551 GCACCCATTGTCTAAATACACATTTT 58.903 34.615 0.00 0.00 35.88 1.82
3533 9967 6.210385 TGCACCCATTGTCTAAATACACATTT 59.790 34.615 0.00 0.00 38.02 2.32
3534 9968 5.714333 TGCACCCATTGTCTAAATACACATT 59.286 36.000 0.00 0.00 0.00 2.71
3535 9969 5.260424 TGCACCCATTGTCTAAATACACAT 58.740 37.500 0.00 0.00 0.00 3.21
3536 9970 4.657013 TGCACCCATTGTCTAAATACACA 58.343 39.130 0.00 0.00 0.00 3.72
3537 9971 5.835113 ATGCACCCATTGTCTAAATACAC 57.165 39.130 0.00 0.00 0.00 2.90
3538 9972 6.016360 GCATATGCACCCATTGTCTAAATACA 60.016 38.462 22.84 0.00 41.59 2.29
3539 9973 6.381801 GCATATGCACCCATTGTCTAAATAC 58.618 40.000 22.84 0.00 41.59 1.89
3540 9974 6.573664 GCATATGCACCCATTGTCTAAATA 57.426 37.500 22.84 0.00 41.59 1.40
3541 9975 5.458041 GCATATGCACCCATTGTCTAAAT 57.542 39.130 22.84 0.00 41.59 1.40
3542 9976 4.916983 GCATATGCACCCATTGTCTAAA 57.083 40.909 22.84 0.00 41.59 1.85
3556 9990 0.397941 TGGCTCCTAGGTGCATATGC 59.602 55.000 31.19 21.09 42.50 3.14
3557 9991 3.079578 CAATGGCTCCTAGGTGCATATG 58.920 50.000 31.19 22.47 36.47 1.78
3558 9992 2.553904 GCAATGGCTCCTAGGTGCATAT 60.554 50.000 31.19 22.72 36.47 1.78
3559 9993 1.202806 GCAATGGCTCCTAGGTGCATA 60.203 52.381 31.19 21.70 36.47 3.14
3560 9994 0.466922 GCAATGGCTCCTAGGTGCAT 60.467 55.000 31.19 21.04 36.47 3.96
3561 9995 1.077501 GCAATGGCTCCTAGGTGCA 60.078 57.895 31.19 19.96 36.47 4.57
3562 9996 1.825622 GGCAATGGCTCCTAGGTGC 60.826 63.158 24.68 24.68 40.87 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.