Multiple sequence alignment - TraesCS1A01G035600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G035600 chr1A 100.000 3125 0 0 1 3125 19064368 19061244 0.000000e+00 5771.0
1 TraesCS1A01G035600 chr1A 91.867 332 13 9 194 519 19085240 19084917 4.750000e-123 451.0
2 TraesCS1A01G035600 chr1A 84.568 324 35 8 1705 2013 19134262 19134585 1.090000e-79 307.0
3 TraesCS1A01G035600 chr1A 82.051 351 26 18 187 514 19086126 19086462 6.650000e-67 265.0
4 TraesCS1A01G035600 chr1A 90.374 187 18 0 1 187 35209724 35209910 2.410000e-61 246.0
5 TraesCS1A01G035600 chr1A 89.005 191 20 1 1 191 471486480 471486291 5.210000e-58 235.0
6 TraesCS1A01G035600 chr1A 87.692 195 10 3 194 374 19550744 19550938 6.790000e-52 215.0
7 TraesCS1A01G035600 chr1A 77.485 342 38 22 187 511 19064830 19065149 5.360000e-38 169.0
8 TraesCS1A01G035600 chr1B 91.698 1602 88 21 830 2408 25114148 25112569 0.000000e+00 2180.0
9 TraesCS1A01G035600 chr1B 85.084 476 23 18 213 659 25115445 25114989 2.860000e-120 442.0
10 TraesCS1A01G035600 chr1B 92.308 221 13 2 274 494 25114497 25114281 8.420000e-81 311.0
11 TraesCS1A01G035600 chr1D 88.081 1636 110 39 830 2408 17237865 17236258 0.000000e+00 1862.0
12 TraesCS1A01G035600 chr1D 88.585 1279 89 33 964 2196 17248004 17249271 0.000000e+00 1500.0
13 TraesCS1A01G035600 chr1D 86.686 353 16 7 194 525 17238464 17238122 2.290000e-96 363.0
14 TraesCS1A01G035600 chr1D 83.287 359 26 17 187 525 17247206 17247550 1.820000e-77 300.0
15 TraesCS1A01G035600 chr1D 85.268 224 29 4 2406 2627 317980001 317980222 8.720000e-56 228.0
16 TraesCS1A01G035600 chr3A 90.054 734 62 8 2403 3125 370616242 370616975 0.000000e+00 941.0
17 TraesCS1A01G035600 chr3A 89.067 750 51 8 2407 3125 745276131 745276880 0.000000e+00 902.0
18 TraesCS1A01G035600 chr3A 85.714 245 11 1 2407 2627 745627531 745627287 1.450000e-58 237.0
19 TraesCS1A01G035600 chr3A 95.556 45 2 0 659 703 589314614 589314570 4.320000e-09 73.1
20 TraesCS1A01G035600 chr6A 89.973 748 45 16 2406 3123 27428021 27427274 0.000000e+00 939.0
21 TraesCS1A01G035600 chr4A 89.840 748 46 13 2404 3122 127280219 127279473 0.000000e+00 933.0
22 TraesCS1A01G035600 chr4A 89.558 747 49 15 2408 3125 555753528 555754274 0.000000e+00 920.0
23 TraesCS1A01G035600 chr5A 90.550 709 55 7 2408 3105 552222332 552221625 0.000000e+00 928.0
24 TraesCS1A01G035600 chr5A 89.524 735 57 12 2406 3122 218317145 218316413 0.000000e+00 913.0
25 TraesCS1A01G035600 chr5A 84.828 145 18 2 1229 1373 524016354 524016494 3.250000e-30 143.0
26 TraesCS1A01G035600 chr5A 80.769 78 13 2 2213 2290 264423325 264423250 3.370000e-05 60.2
27 TraesCS1A01G035600 chr7A 89.664 745 51 13 2407 3125 186075395 186076139 0.000000e+00 926.0
28 TraesCS1A01G035600 chr7A 89.865 740 46 16 2408 3122 113270622 113271357 0.000000e+00 924.0
29 TraesCS1A01G035600 chr7A 88.750 80 6 1 1806 1885 626940749 626940825 9.230000e-16 95.3
30 TraesCS1A01G035600 chr7D 88.981 726 66 7 2408 3120 56104955 56105679 0.000000e+00 885.0
31 TraesCS1A01G035600 chr7D 90.395 177 17 0 11 187 242766323 242766147 1.870000e-57 233.0
32 TraesCS1A01G035600 chr7D 85.650 223 28 4 2407 2627 61155889 61156109 6.740000e-57 231.0
33 TraesCS1A01G035600 chr7D 80.995 221 19 10 1713 1932 510018647 510018449 1.500000e-33 154.0
34 TraesCS1A01G035600 chr5D 86.740 724 78 10 2411 3123 484740400 484739684 0.000000e+00 789.0
35 TraesCS1A01G035600 chr3D 93.194 191 12 1 1 191 419520979 419521168 2.370000e-71 279.0
36 TraesCS1A01G035600 chr3D 85.333 225 29 4 2405 2627 613955327 613955549 2.420000e-56 230.0
37 TraesCS1A01G035600 chr4B 78.959 461 55 24 1486 1944 233678237 233678657 3.070000e-70 276.0
38 TraesCS1A01G035600 chr2B 95.266 169 8 0 661 829 496596880 496596712 5.140000e-68 268.0
39 TraesCS1A01G035600 chr2B 77.778 135 25 5 2224 2356 198641278 198641147 9.290000e-11 78.7
40 TraesCS1A01G035600 chr7B 78.308 461 61 22 1486 1944 655258228 655258651 8.600000e-66 261.0
41 TraesCS1A01G035600 chr6B 90.055 181 18 0 1 181 98396528 98396708 5.210000e-58 235.0
42 TraesCS1A01G035600 chr6B 90.055 181 18 0 1 181 98439519 98439699 5.210000e-58 235.0
43 TraesCS1A01G035600 chr6B 90.055 181 18 0 1 181 98525526 98525706 5.210000e-58 235.0
44 TraesCS1A01G035600 chr6B 89.503 181 19 0 1 181 98414333 98414513 2.420000e-56 230.0
45 TraesCS1A01G035600 chr6B 89.503 181 19 0 1 181 98613048 98613228 2.420000e-56 230.0
46 TraesCS1A01G035600 chr3B 86.550 171 21 2 659 828 8517373 8517204 1.480000e-43 187.0
47 TraesCS1A01G035600 chr3B 85.380 171 23 2 659 828 8513759 8513590 3.200000e-40 176.0
48 TraesCS1A01G035600 chr6D 81.707 82 13 2 2210 2291 445898476 445898397 2.010000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G035600 chr1A 19061244 19064368 3124 True 5771.000000 5771 100.000000 1 3125 1 chr1A.!!$R1 3124
1 TraesCS1A01G035600 chr1B 25112569 25115445 2876 True 977.666667 2180 89.696667 213 2408 3 chr1B.!!$R1 2195
2 TraesCS1A01G035600 chr1D 17236258 17238464 2206 True 1112.500000 1862 87.383500 194 2408 2 chr1D.!!$R1 2214
3 TraesCS1A01G035600 chr1D 17247206 17249271 2065 False 900.000000 1500 85.936000 187 2196 2 chr1D.!!$F2 2009
4 TraesCS1A01G035600 chr3A 370616242 370616975 733 False 941.000000 941 90.054000 2403 3125 1 chr3A.!!$F1 722
5 TraesCS1A01G035600 chr3A 745276131 745276880 749 False 902.000000 902 89.067000 2407 3125 1 chr3A.!!$F2 718
6 TraesCS1A01G035600 chr6A 27427274 27428021 747 True 939.000000 939 89.973000 2406 3123 1 chr6A.!!$R1 717
7 TraesCS1A01G035600 chr4A 127279473 127280219 746 True 933.000000 933 89.840000 2404 3122 1 chr4A.!!$R1 718
8 TraesCS1A01G035600 chr4A 555753528 555754274 746 False 920.000000 920 89.558000 2408 3125 1 chr4A.!!$F1 717
9 TraesCS1A01G035600 chr5A 552221625 552222332 707 True 928.000000 928 90.550000 2408 3105 1 chr5A.!!$R3 697
10 TraesCS1A01G035600 chr5A 218316413 218317145 732 True 913.000000 913 89.524000 2406 3122 1 chr5A.!!$R1 716
11 TraesCS1A01G035600 chr7A 186075395 186076139 744 False 926.000000 926 89.664000 2407 3125 1 chr7A.!!$F2 718
12 TraesCS1A01G035600 chr7A 113270622 113271357 735 False 924.000000 924 89.865000 2408 3122 1 chr7A.!!$F1 714
13 TraesCS1A01G035600 chr7D 56104955 56105679 724 False 885.000000 885 88.981000 2408 3120 1 chr7D.!!$F1 712
14 TraesCS1A01G035600 chr5D 484739684 484740400 716 True 789.000000 789 86.740000 2411 3123 1 chr5D.!!$R1 712

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
67 68 0.038166 AAATGTGCCGACCAGGACAT 59.962 50.0 0.00 0.00 45.00 3.06 F
1045 2158 0.036765 AGCCCATGCATGCAAACAAG 60.037 50.0 26.68 12.85 41.13 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1059 2172 0.179234 TTGACGTGATGTGTGTGGGT 59.821 50.0 0.0 0.0 0.00 4.51 R
2315 3507 0.365523 CGAAGCCGTTCACATACACG 59.634 55.0 0.0 0.0 36.12 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.912149 AATCCATAGTGTGTGGGATACAT 57.088 39.130 0.00 0.00 42.24 2.29
23 24 4.955811 TCCATAGTGTGTGGGATACATC 57.044 45.455 0.00 0.00 42.24 3.06
24 25 4.556697 TCCATAGTGTGTGGGATACATCT 58.443 43.478 0.00 0.00 42.24 2.90
25 26 4.588951 TCCATAGTGTGTGGGATACATCTC 59.411 45.833 0.00 0.00 42.24 2.75
26 27 4.590647 CCATAGTGTGTGGGATACATCTCT 59.409 45.833 0.00 0.00 42.24 3.10
27 28 5.510349 CCATAGTGTGTGGGATACATCTCTG 60.510 48.000 0.00 0.00 42.24 3.35
28 29 2.768527 AGTGTGTGGGATACATCTCTGG 59.231 50.000 0.00 0.00 42.24 3.86
29 30 2.501723 GTGTGTGGGATACATCTCTGGT 59.498 50.000 0.00 0.00 42.24 4.00
30 31 2.766263 TGTGTGGGATACATCTCTGGTC 59.234 50.000 0.00 0.00 42.24 4.02
31 32 2.766263 GTGTGGGATACATCTCTGGTCA 59.234 50.000 0.00 0.00 42.24 4.02
32 33 3.389329 GTGTGGGATACATCTCTGGTCAT 59.611 47.826 0.00 0.00 42.24 3.06
33 34 3.389002 TGTGGGATACATCTCTGGTCATG 59.611 47.826 0.00 0.00 33.42 3.07
34 35 2.974794 TGGGATACATCTCTGGTCATGG 59.025 50.000 0.00 0.00 39.74 3.66
35 36 2.304180 GGGATACATCTCTGGTCATGGG 59.696 54.545 0.00 0.00 39.74 4.00
36 37 3.242867 GGATACATCTCTGGTCATGGGA 58.757 50.000 0.00 0.00 0.00 4.37
37 38 3.843027 GGATACATCTCTGGTCATGGGAT 59.157 47.826 0.00 0.00 0.00 3.85
38 39 4.288105 GGATACATCTCTGGTCATGGGATT 59.712 45.833 0.00 0.00 0.00 3.01
39 40 3.572632 ACATCTCTGGTCATGGGATTG 57.427 47.619 0.00 0.00 0.00 2.67
40 41 2.174210 ACATCTCTGGTCATGGGATTGG 59.826 50.000 0.00 0.00 0.00 3.16
41 42 0.548031 TCTCTGGTCATGGGATTGGC 59.452 55.000 0.00 0.00 0.00 4.52
42 43 0.466922 CTCTGGTCATGGGATTGGCC 60.467 60.000 0.00 0.00 41.95 5.36
56 57 2.347114 GGCCCAACCAAATGTGCC 59.653 61.111 0.00 0.00 38.86 5.01
57 58 2.048316 GCCCAACCAAATGTGCCG 60.048 61.111 0.00 0.00 0.00 5.69
58 59 2.569354 GCCCAACCAAATGTGCCGA 61.569 57.895 0.00 0.00 0.00 5.54
59 60 1.288752 CCCAACCAAATGTGCCGAC 59.711 57.895 0.00 0.00 0.00 4.79
60 61 1.288752 CCAACCAAATGTGCCGACC 59.711 57.895 0.00 0.00 0.00 4.79
61 62 1.459455 CCAACCAAATGTGCCGACCA 61.459 55.000 0.00 0.00 0.00 4.02
62 63 0.039256 CAACCAAATGTGCCGACCAG 60.039 55.000 0.00 0.00 0.00 4.00
63 64 1.178534 AACCAAATGTGCCGACCAGG 61.179 55.000 0.00 0.00 44.97 4.45
64 65 1.303236 CCAAATGTGCCGACCAGGA 60.303 57.895 0.00 0.00 45.00 3.86
65 66 1.586154 CCAAATGTGCCGACCAGGAC 61.586 60.000 0.00 0.00 45.00 3.85
66 67 0.888736 CAAATGTGCCGACCAGGACA 60.889 55.000 0.00 0.00 45.00 4.02
67 68 0.038166 AAATGTGCCGACCAGGACAT 59.962 50.000 0.00 0.00 45.00 3.06
68 69 0.908910 AATGTGCCGACCAGGACATA 59.091 50.000 0.00 0.00 45.00 2.29
69 70 0.908910 ATGTGCCGACCAGGACATAA 59.091 50.000 0.00 0.00 45.00 1.90
70 71 0.687920 TGTGCCGACCAGGACATAAA 59.312 50.000 0.00 0.00 45.00 1.40
71 72 1.338674 TGTGCCGACCAGGACATAAAG 60.339 52.381 0.00 0.00 45.00 1.85
72 73 1.066430 GTGCCGACCAGGACATAAAGA 60.066 52.381 0.00 0.00 45.00 2.52
73 74 1.207089 TGCCGACCAGGACATAAAGAG 59.793 52.381 0.00 0.00 45.00 2.85
74 75 1.480954 GCCGACCAGGACATAAAGAGA 59.519 52.381 0.00 0.00 45.00 3.10
75 76 2.482142 GCCGACCAGGACATAAAGAGAG 60.482 54.545 0.00 0.00 45.00 3.20
76 77 2.761208 CCGACCAGGACATAAAGAGAGT 59.239 50.000 0.00 0.00 45.00 3.24
77 78 3.429547 CCGACCAGGACATAAAGAGAGTG 60.430 52.174 0.00 0.00 45.00 3.51
78 79 3.526534 GACCAGGACATAAAGAGAGTGC 58.473 50.000 0.00 0.00 0.00 4.40
79 80 2.906389 ACCAGGACATAAAGAGAGTGCA 59.094 45.455 0.00 0.00 0.00 4.57
80 81 3.327757 ACCAGGACATAAAGAGAGTGCAA 59.672 43.478 0.00 0.00 0.00 4.08
81 82 4.202461 ACCAGGACATAAAGAGAGTGCAAA 60.202 41.667 0.00 0.00 0.00 3.68
82 83 4.946157 CCAGGACATAAAGAGAGTGCAAAT 59.054 41.667 0.00 0.00 0.00 2.32
83 84 5.416952 CCAGGACATAAAGAGAGTGCAAATT 59.583 40.000 0.00 0.00 0.00 1.82
84 85 6.071728 CCAGGACATAAAGAGAGTGCAAATTT 60.072 38.462 0.00 0.00 0.00 1.82
85 86 6.805271 CAGGACATAAAGAGAGTGCAAATTTG 59.195 38.462 14.03 14.03 0.00 2.32
86 87 6.071728 AGGACATAAAGAGAGTGCAAATTTGG 60.072 38.462 19.47 2.11 0.00 3.28
87 88 5.473039 ACATAAAGAGAGTGCAAATTTGGC 58.527 37.500 19.47 12.02 0.00 4.52
88 89 5.244626 ACATAAAGAGAGTGCAAATTTGGCT 59.755 36.000 19.47 0.00 0.00 4.75
89 90 6.434028 ACATAAAGAGAGTGCAAATTTGGCTA 59.566 34.615 19.47 1.68 0.00 3.93
90 91 5.789643 AAAGAGAGTGCAAATTTGGCTAA 57.210 34.783 19.47 0.00 0.00 3.09
91 92 5.990120 AAGAGAGTGCAAATTTGGCTAAT 57.010 34.783 19.47 3.39 0.00 1.73
92 93 5.573337 AGAGAGTGCAAATTTGGCTAATC 57.427 39.130 19.47 10.61 0.00 1.75
93 94 5.259632 AGAGAGTGCAAATTTGGCTAATCT 58.740 37.500 19.47 14.07 0.00 2.40
94 95 6.418101 AGAGAGTGCAAATTTGGCTAATCTA 58.582 36.000 19.47 0.00 0.00 1.98
95 96 7.059156 AGAGAGTGCAAATTTGGCTAATCTAT 58.941 34.615 19.47 10.34 0.00 1.98
96 97 7.013083 AGAGAGTGCAAATTTGGCTAATCTATG 59.987 37.037 19.47 0.00 0.00 2.23
97 98 6.604795 AGAGTGCAAATTTGGCTAATCTATGT 59.395 34.615 19.47 0.00 0.00 2.29
98 99 6.567050 AGTGCAAATTTGGCTAATCTATGTG 58.433 36.000 19.47 0.00 0.00 3.21
99 100 5.232838 GTGCAAATTTGGCTAATCTATGTGC 59.767 40.000 19.47 2.10 0.00 4.57
100 101 5.105432 TGCAAATTTGGCTAATCTATGTGCA 60.105 36.000 19.47 6.70 0.00 4.57
101 102 5.987347 GCAAATTTGGCTAATCTATGTGCAT 59.013 36.000 19.47 0.00 0.00 3.96
102 103 7.147312 GCAAATTTGGCTAATCTATGTGCATA 58.853 34.615 19.47 0.00 0.00 3.14
103 104 7.327761 GCAAATTTGGCTAATCTATGTGCATAG 59.672 37.037 19.47 11.81 41.58 2.23
114 115 5.052481 TCTATGTGCATAGACATTGACTGC 58.948 41.667 15.59 0.00 43.39 4.40
115 116 3.056588 TGTGCATAGACATTGACTGCA 57.943 42.857 0.00 0.00 40.29 4.41
117 118 2.001872 TGCATAGACATTGACTGCACG 58.998 47.619 0.00 0.00 37.88 5.34
118 119 2.270923 GCATAGACATTGACTGCACGA 58.729 47.619 0.00 0.00 33.13 4.35
119 120 2.868583 GCATAGACATTGACTGCACGAT 59.131 45.455 0.00 0.00 33.13 3.73
120 121 3.060003 GCATAGACATTGACTGCACGATC 60.060 47.826 0.00 0.00 33.13 3.69
121 122 4.366586 CATAGACATTGACTGCACGATCT 58.633 43.478 0.00 0.00 0.00 2.75
122 123 3.325293 AGACATTGACTGCACGATCTT 57.675 42.857 0.00 0.00 0.00 2.40
123 124 3.257393 AGACATTGACTGCACGATCTTC 58.743 45.455 0.00 0.00 0.00 2.87
124 125 2.995939 GACATTGACTGCACGATCTTCA 59.004 45.455 0.00 0.00 0.00 3.02
125 126 3.402110 ACATTGACTGCACGATCTTCAA 58.598 40.909 0.00 0.00 0.00 2.69
126 127 3.814842 ACATTGACTGCACGATCTTCAAA 59.185 39.130 0.00 0.00 30.34 2.69
127 128 4.275689 ACATTGACTGCACGATCTTCAAAA 59.724 37.500 0.00 0.00 30.34 2.44
128 129 4.472691 TTGACTGCACGATCTTCAAAAG 57.527 40.909 0.00 0.00 0.00 2.27
129 130 3.466836 TGACTGCACGATCTTCAAAAGT 58.533 40.909 0.00 0.00 0.00 2.66
130 131 4.627058 TGACTGCACGATCTTCAAAAGTA 58.373 39.130 0.00 0.00 0.00 2.24
131 132 5.053811 TGACTGCACGATCTTCAAAAGTAA 58.946 37.500 0.00 0.00 0.00 2.24
132 133 5.525745 TGACTGCACGATCTTCAAAAGTAAA 59.474 36.000 0.00 0.00 0.00 2.01
133 134 6.204688 TGACTGCACGATCTTCAAAAGTAAAT 59.795 34.615 0.00 0.00 0.00 1.40
134 135 6.970484 ACTGCACGATCTTCAAAAGTAAATT 58.030 32.000 0.00 0.00 0.00 1.82
135 136 7.425606 ACTGCACGATCTTCAAAAGTAAATTT 58.574 30.769 0.00 0.00 0.00 1.82
136 137 8.564574 ACTGCACGATCTTCAAAAGTAAATTTA 58.435 29.630 0.00 0.00 0.00 1.40
137 138 8.722342 TGCACGATCTTCAAAAGTAAATTTAC 57.278 30.769 18.77 18.77 0.00 2.01
138 139 8.346300 TGCACGATCTTCAAAAGTAAATTTACA 58.654 29.630 26.06 6.22 36.12 2.41
139 140 8.840867 GCACGATCTTCAAAAGTAAATTTACAG 58.159 33.333 26.06 15.28 36.12 2.74
140 141 9.878599 CACGATCTTCAAAAGTAAATTTACAGT 57.121 29.630 26.06 13.35 36.12 3.55
148 149 9.643735 TCAAAAGTAAATTTACAGTTTAGGGGA 57.356 29.630 26.06 16.04 36.12 4.81
153 154 9.404848 AGTAAATTTACAGTTTAGGGGAATAGC 57.595 33.333 26.06 0.00 36.12 2.97
154 155 9.404848 GTAAATTTACAGTTTAGGGGAATAGCT 57.595 33.333 20.95 0.00 33.88 3.32
159 160 9.443365 TTTACAGTTTAGGGGAATAGCTATACT 57.557 33.333 6.68 1.11 0.00 2.12
176 177 8.865420 AGCTATACTATTAATCTTCTGGACGA 57.135 34.615 0.00 0.00 0.00 4.20
177 178 9.469097 AGCTATACTATTAATCTTCTGGACGAT 57.531 33.333 0.00 0.00 0.00 3.73
178 179 9.509855 GCTATACTATTAATCTTCTGGACGATG 57.490 37.037 0.00 0.00 0.00 3.84
180 181 5.542779 ACTATTAATCTTCTGGACGATGGC 58.457 41.667 0.00 0.00 0.00 4.40
181 182 2.509052 TAATCTTCTGGACGATGGCG 57.491 50.000 0.00 0.00 44.79 5.69
182 183 0.824109 AATCTTCTGGACGATGGCGA 59.176 50.000 0.00 0.00 41.64 5.54
183 184 0.103208 ATCTTCTGGACGATGGCGAC 59.897 55.000 0.00 0.00 41.64 5.19
200 201 4.210832 GCGACATTTAGCCTAAATCCAC 57.789 45.455 6.73 1.83 36.29 4.02
211 212 4.215613 AGCCTAAATCCACGAACAGAAAAC 59.784 41.667 0.00 0.00 0.00 2.43
224 228 6.769341 ACGAACAGAAAACTGGGTATTACTTT 59.231 34.615 0.00 0.00 0.00 2.66
397 1304 1.271163 CCGGCCTTCTCCAACACTAAA 60.271 52.381 0.00 0.00 0.00 1.85
425 1332 8.599624 AGTCCATGGATTGTTCTTAATTTCAT 57.400 30.769 19.62 0.00 0.00 2.57
452 1363 4.882671 AACAATGGCTTAACTATGCGAG 57.117 40.909 0.00 0.00 0.00 5.03
478 1390 2.544694 CGTTTTGGGTTAAGCACATGCA 60.545 45.455 6.64 0.00 45.16 3.96
479 1391 3.663025 GTTTTGGGTTAAGCACATGCAT 58.337 40.909 6.64 0.00 45.16 3.96
480 1392 3.316071 TTTGGGTTAAGCACATGCATG 57.684 42.857 25.09 25.09 45.16 4.06
481 1393 2.212812 TGGGTTAAGCACATGCATGA 57.787 45.000 32.75 7.36 45.16 3.07
494 1406 6.184242 GCACATGCATGACCAAGATAACTTG 61.184 44.000 32.75 15.90 45.04 3.16
529 1441 4.608948 GGTATGACCTAGCTAAGCACAT 57.391 45.455 0.00 1.81 34.73 3.21
530 1442 4.310769 GGTATGACCTAGCTAAGCACATG 58.689 47.826 10.81 0.00 34.73 3.21
531 1443 2.988010 TGACCTAGCTAAGCACATGG 57.012 50.000 0.00 0.00 0.00 3.66
538 1594 0.308993 GCTAAGCACATGGCCGATTC 59.691 55.000 0.00 0.00 46.50 2.52
555 1611 5.585047 GCCGATTCCCTAGCGATTAATTAAT 59.415 40.000 10.51 10.51 0.00 1.40
556 1612 6.093633 GCCGATTCCCTAGCGATTAATTAATT 59.906 38.462 11.92 5.89 0.00 1.40
557 1613 7.279313 GCCGATTCCCTAGCGATTAATTAATTA 59.721 37.037 11.92 3.71 0.00 1.40
558 1614 9.158233 CCGATTCCCTAGCGATTAATTAATTAA 57.842 33.333 20.11 20.11 36.75 1.40
563 1619 8.143193 TCCCTAGCGATTAATTAATTAACACGA 58.857 33.333 30.96 20.07 37.46 4.35
567 1623 8.913625 AGCGATTAATTAATTAACACGAATCG 57.086 30.769 30.96 27.73 37.46 3.34
591 1647 3.691118 TCATAAACAAGTGAGCATGGAGC 59.309 43.478 0.00 0.00 46.19 4.70
624 1680 2.576893 CGTGCATGCCTACGTAGCG 61.577 63.158 19.28 11.34 35.70 4.26
625 1681 2.584970 TGCATGCCTACGTAGCGC 60.585 61.111 21.88 21.88 0.00 5.92
639 1695 2.347292 CGTAGCGCGCTTAATTAGTTGG 60.347 50.000 41.04 11.93 0.00 3.77
644 1700 1.065551 GCGCTTAATTAGTTGGGCAGG 59.934 52.381 0.00 0.00 38.10 4.85
645 1701 2.639065 CGCTTAATTAGTTGGGCAGGA 58.361 47.619 0.00 0.00 0.00 3.86
647 1703 3.181500 CGCTTAATTAGTTGGGCAGGAAC 60.181 47.826 0.00 0.00 0.00 3.62
648 1704 3.761752 GCTTAATTAGTTGGGCAGGAACA 59.238 43.478 0.00 0.00 0.00 3.18
649 1705 4.219725 GCTTAATTAGTTGGGCAGGAACAA 59.780 41.667 0.00 0.00 0.00 2.83
650 1706 5.105351 GCTTAATTAGTTGGGCAGGAACAAT 60.105 40.000 0.00 0.00 0.00 2.71
651 1707 6.524101 TTAATTAGTTGGGCAGGAACAATC 57.476 37.500 0.00 0.00 0.00 2.67
664 1720 4.718940 GGAACAATCCACATCCGAAATT 57.281 40.909 0.00 0.00 45.79 1.82
665 1721 4.423732 GGAACAATCCACATCCGAAATTG 58.576 43.478 0.00 0.00 45.79 2.32
666 1722 3.508744 ACAATCCACATCCGAAATTGC 57.491 42.857 0.00 0.00 31.96 3.56
667 1723 3.091545 ACAATCCACATCCGAAATTGCT 58.908 40.909 0.00 0.00 31.96 3.91
668 1724 3.511146 ACAATCCACATCCGAAATTGCTT 59.489 39.130 0.00 0.00 31.96 3.91
669 1725 4.021192 ACAATCCACATCCGAAATTGCTTT 60.021 37.500 0.00 0.00 31.96 3.51
670 1726 5.184864 ACAATCCACATCCGAAATTGCTTTA 59.815 36.000 0.00 0.00 31.96 1.85
671 1727 4.695217 TCCACATCCGAAATTGCTTTAC 57.305 40.909 0.00 0.00 0.00 2.01
672 1728 3.126171 TCCACATCCGAAATTGCTTTACG 59.874 43.478 0.00 0.00 0.00 3.18
673 1729 3.425404 CACATCCGAAATTGCTTTACGG 58.575 45.455 0.00 0.00 44.09 4.02
676 1732 1.727880 TCCGAAATTGCTTTACGGACG 59.272 47.619 0.00 0.00 45.87 4.79
677 1733 1.727880 CCGAAATTGCTTTACGGACGA 59.272 47.619 0.00 0.00 45.31 4.20
678 1734 2.473376 CCGAAATTGCTTTACGGACGAC 60.473 50.000 0.00 0.00 45.31 4.34
679 1735 2.156117 CGAAATTGCTTTACGGACGACA 59.844 45.455 0.00 0.00 0.00 4.35
680 1736 3.476181 GAAATTGCTTTACGGACGACAC 58.524 45.455 0.00 0.00 0.00 3.67
681 1737 2.450609 ATTGCTTTACGGACGACACT 57.549 45.000 0.00 0.00 0.00 3.55
682 1738 1.493772 TTGCTTTACGGACGACACTG 58.506 50.000 0.00 0.00 0.00 3.66
683 1739 0.942410 TGCTTTACGGACGACACTGC 60.942 55.000 0.00 0.00 0.00 4.40
684 1740 1.623973 GCTTTACGGACGACACTGCC 61.624 60.000 0.00 0.00 0.00 4.85
685 1741 1.005867 TTTACGGACGACACTGCCC 60.006 57.895 0.00 0.00 0.00 5.36
686 1742 2.752322 TTTACGGACGACACTGCCCG 62.752 60.000 0.00 0.00 46.65 6.13
703 1759 2.586792 GCAGGACCTGGAAGCGAT 59.413 61.111 23.09 0.00 31.21 4.58
704 1760 1.823295 GCAGGACCTGGAAGCGATA 59.177 57.895 23.09 0.00 31.21 2.92
705 1761 0.530870 GCAGGACCTGGAAGCGATAC 60.531 60.000 23.09 0.00 31.21 2.24
706 1762 1.115467 CAGGACCTGGAAGCGATACT 58.885 55.000 14.26 0.00 0.00 2.12
707 1763 1.482593 CAGGACCTGGAAGCGATACTT 59.517 52.381 14.26 0.00 42.98 2.24
716 1772 2.693267 AAGCGATACTTCCTCCCAAC 57.307 50.000 0.00 0.00 30.77 3.77
717 1773 0.460311 AGCGATACTTCCTCCCAACG 59.540 55.000 0.00 0.00 0.00 4.10
718 1774 0.529992 GCGATACTTCCTCCCAACGG 60.530 60.000 0.00 0.00 0.00 4.44
719 1775 0.529992 CGATACTTCCTCCCAACGGC 60.530 60.000 0.00 0.00 0.00 5.68
720 1776 0.831307 GATACTTCCTCCCAACGGCT 59.169 55.000 0.00 0.00 0.00 5.52
721 1777 0.831307 ATACTTCCTCCCAACGGCTC 59.169 55.000 0.00 0.00 0.00 4.70
722 1778 0.252103 TACTTCCTCCCAACGGCTCT 60.252 55.000 0.00 0.00 0.00 4.09
723 1779 0.252103 ACTTCCTCCCAACGGCTCTA 60.252 55.000 0.00 0.00 0.00 2.43
724 1780 0.902531 CTTCCTCCCAACGGCTCTAA 59.097 55.000 0.00 0.00 0.00 2.10
725 1781 0.902531 TTCCTCCCAACGGCTCTAAG 59.097 55.000 0.00 0.00 0.00 2.18
726 1782 1.153349 CCTCCCAACGGCTCTAAGC 60.153 63.158 0.00 0.00 41.46 3.09
727 1783 1.596934 CTCCCAACGGCTCTAAGCA 59.403 57.895 0.86 0.00 44.75 3.91
728 1784 0.179000 CTCCCAACGGCTCTAAGCAT 59.821 55.000 0.86 0.00 44.75 3.79
729 1785 0.178068 TCCCAACGGCTCTAAGCATC 59.822 55.000 0.86 0.00 44.75 3.91
730 1786 0.107703 CCCAACGGCTCTAAGCATCA 60.108 55.000 0.86 0.00 44.75 3.07
731 1787 1.293924 CCAACGGCTCTAAGCATCAG 58.706 55.000 0.86 0.00 44.75 2.90
732 1788 0.654683 CAACGGCTCTAAGCATCAGC 59.345 55.000 0.86 0.00 44.75 4.26
738 1794 3.417690 GCTCTAAGCATCAGCCAAAAG 57.582 47.619 0.00 0.00 41.89 2.27
739 1795 3.012518 GCTCTAAGCATCAGCCAAAAGA 58.987 45.455 0.00 0.00 41.89 2.52
740 1796 3.441572 GCTCTAAGCATCAGCCAAAAGAA 59.558 43.478 0.00 0.00 41.89 2.52
741 1797 4.082571 GCTCTAAGCATCAGCCAAAAGAAA 60.083 41.667 0.00 0.00 41.89 2.52
742 1798 5.565439 GCTCTAAGCATCAGCCAAAAGAAAA 60.565 40.000 0.00 0.00 41.89 2.29
743 1799 6.403866 TCTAAGCATCAGCCAAAAGAAAAA 57.596 33.333 0.00 0.00 43.56 1.94
744 1800 6.215845 TCTAAGCATCAGCCAAAAGAAAAAC 58.784 36.000 0.00 0.00 43.56 2.43
745 1801 4.405116 AGCATCAGCCAAAAGAAAAACA 57.595 36.364 0.00 0.00 43.56 2.83
746 1802 4.768583 AGCATCAGCCAAAAGAAAAACAA 58.231 34.783 0.00 0.00 43.56 2.83
747 1803 5.370679 AGCATCAGCCAAAAGAAAAACAAT 58.629 33.333 0.00 0.00 43.56 2.71
748 1804 5.824097 AGCATCAGCCAAAAGAAAAACAATT 59.176 32.000 0.00 0.00 43.56 2.32
749 1805 5.910723 GCATCAGCCAAAAGAAAAACAATTG 59.089 36.000 3.24 3.24 33.58 2.32
750 1806 5.482686 TCAGCCAAAAGAAAAACAATTGC 57.517 34.783 5.05 0.00 0.00 3.56
751 1807 4.335037 TCAGCCAAAAGAAAAACAATTGCC 59.665 37.500 5.05 0.00 0.00 4.52
752 1808 4.336153 CAGCCAAAAGAAAAACAATTGCCT 59.664 37.500 5.05 0.00 0.00 4.75
753 1809 4.576053 AGCCAAAAGAAAAACAATTGCCTC 59.424 37.500 5.05 0.00 0.00 4.70
754 1810 4.335037 GCCAAAAGAAAAACAATTGCCTCA 59.665 37.500 5.05 0.00 0.00 3.86
755 1811 5.008911 GCCAAAAGAAAAACAATTGCCTCAT 59.991 36.000 5.05 0.00 0.00 2.90
756 1812 6.432107 CCAAAAGAAAAACAATTGCCTCATG 58.568 36.000 5.05 0.00 0.00 3.07
757 1813 5.678132 AAAGAAAAACAATTGCCTCATGC 57.322 34.783 5.05 0.00 41.77 4.06
758 1814 3.319755 AGAAAAACAATTGCCTCATGCG 58.680 40.909 5.05 0.00 45.60 4.73
759 1815 1.431496 AAAACAATTGCCTCATGCGC 58.569 45.000 5.05 0.00 45.60 6.09
760 1816 0.317799 AAACAATTGCCTCATGCGCA 59.682 45.000 14.96 14.96 45.60 6.09
761 1817 0.388907 AACAATTGCCTCATGCGCAC 60.389 50.000 14.90 0.00 45.60 5.34
762 1818 1.246056 ACAATTGCCTCATGCGCACT 61.246 50.000 14.90 0.00 45.60 4.40
763 1819 0.800683 CAATTGCCTCATGCGCACTG 60.801 55.000 14.90 12.98 45.60 3.66
764 1820 1.246056 AATTGCCTCATGCGCACTGT 61.246 50.000 14.90 0.00 45.60 3.55
765 1821 1.246056 ATTGCCTCATGCGCACTGTT 61.246 50.000 14.90 0.00 45.60 3.16
766 1822 2.132517 TTGCCTCATGCGCACTGTTG 62.133 55.000 14.90 7.46 45.60 3.33
767 1823 2.872557 CCTCATGCGCACTGTTGG 59.127 61.111 14.90 14.41 0.00 3.77
782 1838 2.030412 TGGTGCTGCCACGTACAG 59.970 61.111 12.25 12.25 43.61 2.74
783 1839 2.030562 GGTGCTGCCACGTACAGT 59.969 61.111 16.52 0.00 43.00 3.55
784 1840 2.027625 GGTGCTGCCACGTACAGTC 61.028 63.158 16.52 10.72 43.00 3.51
786 1842 0.670546 GTGCTGCCACGTACAGTCAT 60.671 55.000 16.52 0.00 37.47 3.06
792 1848 1.290203 CCACGTACAGTCATCCATGC 58.710 55.000 0.00 0.00 0.00 4.06
794 1850 2.554142 CACGTACAGTCATCCATGCAT 58.446 47.619 0.00 0.00 0.00 3.96
796 1852 1.788886 CGTACAGTCATCCATGCATCG 59.211 52.381 0.00 0.00 0.00 3.84
797 1853 2.138320 GTACAGTCATCCATGCATCGG 58.862 52.381 0.00 2.19 0.00 4.18
800 1856 2.281002 TCATCCATGCATCGGCCG 60.281 61.111 22.12 22.12 40.13 6.13
801 1857 4.034258 CATCCATGCATCGGCCGC 62.034 66.667 23.51 7.33 40.13 6.53
802 1858 4.567488 ATCCATGCATCGGCCGCA 62.567 61.111 23.51 14.12 44.94 5.69
804 1860 4.260355 CCATGCATCGGCCGCAAG 62.260 66.667 23.51 13.79 43.84 4.01
805 1861 3.511595 CATGCATCGGCCGCAAGT 61.512 61.111 23.51 2.90 43.84 3.16
806 1862 2.751436 ATGCATCGGCCGCAAGTT 60.751 55.556 23.51 1.45 43.84 2.66
807 1863 2.342650 ATGCATCGGCCGCAAGTTT 61.343 52.632 23.51 0.00 43.84 2.66
808 1864 2.504681 GCATCGGCCGCAAGTTTG 60.505 61.111 23.51 11.57 0.00 2.93
809 1865 2.953821 CATCGGCCGCAAGTTTGT 59.046 55.556 23.51 0.00 0.00 2.83
810 1866 1.154225 CATCGGCCGCAAGTTTGTC 60.154 57.895 23.51 0.00 0.00 3.18
811 1867 2.677003 ATCGGCCGCAAGTTTGTCG 61.677 57.895 23.51 0.00 0.00 4.35
812 1868 3.645975 CGGCCGCAAGTTTGTCGT 61.646 61.111 14.67 0.00 0.00 4.34
813 1869 2.051345 GGCCGCAAGTTTGTCGTG 60.051 61.111 0.00 0.00 0.00 4.35
814 1870 2.713154 GCCGCAAGTTTGTCGTGT 59.287 55.556 7.51 0.00 0.00 4.49
815 1871 1.654137 GCCGCAAGTTTGTCGTGTG 60.654 57.895 7.51 0.00 36.19 3.82
816 1872 1.719117 CCGCAAGTTTGTCGTGTGT 59.281 52.632 7.51 0.00 35.03 3.72
817 1873 0.931702 CCGCAAGTTTGTCGTGTGTA 59.068 50.000 7.51 0.00 35.03 2.90
818 1874 1.529438 CCGCAAGTTTGTCGTGTGTAT 59.471 47.619 7.51 0.00 35.03 2.29
819 1875 2.732500 CCGCAAGTTTGTCGTGTGTATA 59.267 45.455 7.51 0.00 35.03 1.47
820 1876 3.181534 CCGCAAGTTTGTCGTGTGTATAG 60.182 47.826 7.51 0.00 35.03 1.31
821 1877 3.720920 CGCAAGTTTGTCGTGTGTATAGC 60.721 47.826 0.00 0.00 32.89 2.97
822 1878 3.185594 GCAAGTTTGTCGTGTGTATAGCA 59.814 43.478 0.00 0.00 0.00 3.49
823 1879 4.319190 GCAAGTTTGTCGTGTGTATAGCAA 60.319 41.667 0.00 0.00 0.00 3.91
824 1880 4.985044 AGTTTGTCGTGTGTATAGCAAC 57.015 40.909 0.00 0.00 0.00 4.17
825 1881 4.373527 AGTTTGTCGTGTGTATAGCAACA 58.626 39.130 0.00 0.00 0.00 3.33
889 1948 2.401766 GGATCAAGTGCCGCCACAG 61.402 63.158 0.00 0.00 44.53 3.66
890 1949 1.672356 GATCAAGTGCCGCCACAGT 60.672 57.895 0.00 0.00 44.53 3.55
891 1950 1.639298 GATCAAGTGCCGCCACAGTC 61.639 60.000 0.00 0.00 44.53 3.51
892 1951 3.357079 CAAGTGCCGCCACAGTCC 61.357 66.667 0.00 0.00 44.53 3.85
893 1952 3.872603 AAGTGCCGCCACAGTCCA 61.873 61.111 0.00 0.00 44.53 4.02
894 1953 4.626081 AGTGCCGCCACAGTCCAC 62.626 66.667 0.00 0.00 44.53 4.02
895 1954 4.927782 GTGCCGCCACAGTCCACA 62.928 66.667 0.00 0.00 41.67 4.17
896 1955 4.927782 TGCCGCCACAGTCCACAC 62.928 66.667 0.00 0.00 0.00 3.82
928 1987 6.486657 TCTCCAACCATTAAAACACAAGAGAG 59.513 38.462 0.00 0.00 0.00 3.20
962 2025 1.368019 CGTCAATTATGGCTGCGCG 60.368 57.895 0.00 0.00 0.00 6.86
998 2101 1.954362 ATCACTCACTGCCCGCTCTC 61.954 60.000 0.00 0.00 0.00 3.20
999 2102 2.283532 ACTCACTGCCCGCTCTCT 60.284 61.111 0.00 0.00 0.00 3.10
1000 2103 2.347322 ACTCACTGCCCGCTCTCTC 61.347 63.158 0.00 0.00 0.00 3.20
1001 2104 2.036414 TCACTGCCCGCTCTCTCT 59.964 61.111 0.00 0.00 0.00 3.10
1010 2113 3.898123 TGCCCGCTCTCTCTATAAGAATT 59.102 43.478 0.00 0.00 32.23 2.17
1013 2116 5.474825 CCCGCTCTCTCTATAAGAATTTCC 58.525 45.833 0.00 0.00 32.23 3.13
1045 2158 0.036765 AGCCCATGCATGCAAACAAG 60.037 50.000 26.68 12.85 41.13 3.16
1051 2164 2.495409 TGCATGCAAACAAGTCACTG 57.505 45.000 20.30 0.00 0.00 3.66
1057 2170 1.266989 GCAAACAAGTCACTGGTAGCC 59.733 52.381 0.00 0.00 0.00 3.93
1058 2171 2.851195 CAAACAAGTCACTGGTAGCCT 58.149 47.619 0.00 0.00 0.00 4.58
1059 2172 3.805807 GCAAACAAGTCACTGGTAGCCTA 60.806 47.826 0.00 0.00 0.00 3.93
1060 2173 3.679824 AACAAGTCACTGGTAGCCTAC 57.320 47.619 0.00 0.00 0.00 3.18
1074 2203 1.019278 GCCTACCCACACACATCACG 61.019 60.000 0.00 0.00 0.00 4.35
1122 2261 1.662438 CTCCTCGTCTCCACTGCTCC 61.662 65.000 0.00 0.00 0.00 4.70
1133 2272 2.360100 CTGCTCCTGCTGCTGCTT 60.360 61.111 17.00 0.00 40.48 3.91
1454 2593 2.039818 TCTACGACTACTGCCTCCTG 57.960 55.000 0.00 0.00 0.00 3.86
1648 2787 2.126228 CACGACGCGGCTAGGAAA 60.126 61.111 11.76 0.00 0.00 3.13
1649 2788 1.518572 CACGACGCGGCTAGGAAAT 60.519 57.895 11.76 0.00 0.00 2.17
1709 2848 1.675641 GTGCACCAGGGACATCACC 60.676 63.158 5.22 0.00 37.84 4.02
1848 2987 0.243907 CTTCTTCTTCCCGCTCGACA 59.756 55.000 0.00 0.00 0.00 4.35
1933 3076 2.166664 GGGTGGAGTACAGCTAGTCAAG 59.833 54.545 4.19 0.00 46.60 3.02
2050 3202 2.043252 TCCAACCGGGGTCCAAATAATT 59.957 45.455 6.32 0.00 37.22 1.40
2051 3203 3.268856 TCCAACCGGGGTCCAAATAATTA 59.731 43.478 6.32 0.00 37.22 1.40
2052 3204 4.024670 CCAACCGGGGTCCAAATAATTAA 58.975 43.478 6.32 0.00 0.00 1.40
2053 3205 4.651962 CCAACCGGGGTCCAAATAATTAAT 59.348 41.667 6.32 0.00 0.00 1.40
2079 3258 6.148645 TCTCGTGAAGTGCAAAATAATAAGCA 59.851 34.615 0.00 0.00 34.10 3.91
2115 3294 5.353400 TCGTGGTTGTTTGTGTACATGTTTA 59.647 36.000 2.30 0.00 0.00 2.01
2146 3329 6.921332 AAATAAATTTCGTGCAAACTACCG 57.079 33.333 0.00 0.00 0.00 4.02
2254 3444 2.820059 TATTATGCCGGCTCAGTCTG 57.180 50.000 29.70 0.00 0.00 3.51
2271 3463 7.043961 TCAGTCTGTCGAAGATGCTTATAAT 57.956 36.000 0.00 0.00 40.67 1.28
2282 3474 8.297426 CGAAGATGCTTATAATGGTAGAGTGTA 58.703 37.037 0.00 0.00 0.00 2.90
2315 3507 6.306837 GCATTTATAGAGACGAGTGTATGCTC 59.693 42.308 0.00 0.00 33.70 4.26
2326 3518 4.421058 GAGTGTATGCTCGTGTATGTGAA 58.579 43.478 0.00 0.00 0.00 3.18
2342 3534 1.392510 GTGAACGGCTTCGATTGTACC 59.607 52.381 0.00 0.00 37.63 3.34
2348 3540 1.670674 GGCTTCGATTGTACCGTGTCA 60.671 52.381 0.00 0.00 0.00 3.58
2507 3700 0.668096 CATTCGTCCCGGTTCGTGAA 60.668 55.000 13.60 5.16 0.00 3.18
2521 3714 1.988406 GTGAACCTAGAGGGGCGGT 60.988 63.158 0.00 0.00 40.27 5.68
2716 3933 1.962822 CCGCAGCAGAGCACTTCAA 60.963 57.895 0.00 0.00 0.00 2.69
2751 3968 2.039624 GGCCAGTGAGGAGAGGGA 59.960 66.667 0.00 0.00 41.22 4.20
2772 3989 0.037326 TTTGGGTGCTCTAGCTCACG 60.037 55.000 3.26 0.00 40.52 4.35
2836 4054 3.878160 AGTTAAGCTTTCTCCTCTCGG 57.122 47.619 3.20 0.00 0.00 4.63
2860 4080 2.162681 CGACCTCCAAGCTCCATTTTT 58.837 47.619 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 5.158141 AGATGTATCCCACACACTATGGAT 58.842 41.667 0.00 0.00 40.86 3.41
2 3 4.556697 AGATGTATCCCACACACTATGGA 58.443 43.478 0.00 0.00 40.86 3.41
3 4 4.590647 AGAGATGTATCCCACACACTATGG 59.409 45.833 0.00 0.00 40.86 2.74
5 6 4.590647 CCAGAGATGTATCCCACACACTAT 59.409 45.833 0.00 0.00 40.86 2.12
6 7 3.960755 CCAGAGATGTATCCCACACACTA 59.039 47.826 0.00 0.00 40.86 2.74
7 8 2.768527 CCAGAGATGTATCCCACACACT 59.231 50.000 0.00 0.00 40.86 3.55
8 9 2.501723 ACCAGAGATGTATCCCACACAC 59.498 50.000 0.00 0.00 40.86 3.82
9 10 2.766263 GACCAGAGATGTATCCCACACA 59.234 50.000 0.00 0.00 40.86 3.72
10 11 2.766263 TGACCAGAGATGTATCCCACAC 59.234 50.000 0.00 0.00 40.86 3.82
11 12 3.114643 TGACCAGAGATGTATCCCACA 57.885 47.619 0.00 0.00 42.69 4.17
12 13 3.244353 CCATGACCAGAGATGTATCCCAC 60.244 52.174 0.00 0.00 0.00 4.61
13 14 2.974794 CCATGACCAGAGATGTATCCCA 59.025 50.000 0.00 0.00 0.00 4.37
14 15 2.304180 CCCATGACCAGAGATGTATCCC 59.696 54.545 0.00 0.00 0.00 3.85
15 16 3.242867 TCCCATGACCAGAGATGTATCC 58.757 50.000 0.00 0.00 0.00 2.59
16 17 5.243981 CAATCCCATGACCAGAGATGTATC 58.756 45.833 0.00 0.00 0.00 2.24
17 18 4.042560 CCAATCCCATGACCAGAGATGTAT 59.957 45.833 0.00 0.00 0.00 2.29
18 19 3.392285 CCAATCCCATGACCAGAGATGTA 59.608 47.826 0.00 0.00 0.00 2.29
19 20 2.174210 CCAATCCCATGACCAGAGATGT 59.826 50.000 0.00 0.00 0.00 3.06
20 21 2.860009 CCAATCCCATGACCAGAGATG 58.140 52.381 0.00 0.00 0.00 2.90
21 22 1.144503 GCCAATCCCATGACCAGAGAT 59.855 52.381 0.00 0.00 0.00 2.75
22 23 0.548031 GCCAATCCCATGACCAGAGA 59.452 55.000 0.00 0.00 0.00 3.10
23 24 0.466922 GGCCAATCCCATGACCAGAG 60.467 60.000 0.00 0.00 0.00 3.35
24 25 1.614711 GGCCAATCCCATGACCAGA 59.385 57.895 0.00 0.00 0.00 3.86
25 26 4.265206 GGCCAATCCCATGACCAG 57.735 61.111 0.00 0.00 0.00 4.00
40 41 2.048316 CGGCACATTTGGTTGGGC 60.048 61.111 0.00 0.00 45.53 5.36
41 42 1.288752 GTCGGCACATTTGGTTGGG 59.711 57.895 0.00 0.00 0.00 4.12
42 43 1.288752 GGTCGGCACATTTGGTTGG 59.711 57.895 0.00 0.00 0.00 3.77
43 44 0.039256 CTGGTCGGCACATTTGGTTG 60.039 55.000 0.00 0.00 0.00 3.77
44 45 1.178534 CCTGGTCGGCACATTTGGTT 61.179 55.000 0.00 0.00 0.00 3.67
45 46 1.603455 CCTGGTCGGCACATTTGGT 60.603 57.895 0.00 0.00 0.00 3.67
46 47 1.303236 TCCTGGTCGGCACATTTGG 60.303 57.895 0.00 0.00 0.00 3.28
47 48 0.888736 TGTCCTGGTCGGCACATTTG 60.889 55.000 0.00 0.00 0.00 2.32
48 49 0.038166 ATGTCCTGGTCGGCACATTT 59.962 50.000 0.00 0.00 32.90 2.32
49 50 0.908910 TATGTCCTGGTCGGCACATT 59.091 50.000 3.64 0.00 36.03 2.71
50 51 0.908910 TTATGTCCTGGTCGGCACAT 59.091 50.000 3.79 3.79 37.34 3.21
51 52 0.687920 TTTATGTCCTGGTCGGCACA 59.312 50.000 0.00 0.00 0.00 4.57
52 53 1.066430 TCTTTATGTCCTGGTCGGCAC 60.066 52.381 0.00 0.00 0.00 5.01
53 54 1.207089 CTCTTTATGTCCTGGTCGGCA 59.793 52.381 0.00 0.00 0.00 5.69
54 55 1.480954 TCTCTTTATGTCCTGGTCGGC 59.519 52.381 0.00 0.00 0.00 5.54
55 56 2.761208 ACTCTCTTTATGTCCTGGTCGG 59.239 50.000 0.00 0.00 0.00 4.79
56 57 3.775202 CACTCTCTTTATGTCCTGGTCG 58.225 50.000 0.00 0.00 0.00 4.79
57 58 3.055819 TGCACTCTCTTTATGTCCTGGTC 60.056 47.826 0.00 0.00 0.00 4.02
58 59 2.906389 TGCACTCTCTTTATGTCCTGGT 59.094 45.455 0.00 0.00 0.00 4.00
59 60 3.616956 TGCACTCTCTTTATGTCCTGG 57.383 47.619 0.00 0.00 0.00 4.45
60 61 6.506500 AATTTGCACTCTCTTTATGTCCTG 57.493 37.500 0.00 0.00 0.00 3.86
61 62 6.071728 CCAAATTTGCACTCTCTTTATGTCCT 60.072 38.462 12.92 0.00 0.00 3.85
62 63 6.095377 CCAAATTTGCACTCTCTTTATGTCC 58.905 40.000 12.92 0.00 0.00 4.02
63 64 5.574443 GCCAAATTTGCACTCTCTTTATGTC 59.426 40.000 12.92 0.00 0.00 3.06
64 65 5.244626 AGCCAAATTTGCACTCTCTTTATGT 59.755 36.000 12.92 0.00 0.00 2.29
65 66 5.717119 AGCCAAATTTGCACTCTCTTTATG 58.283 37.500 12.92 0.00 0.00 1.90
66 67 5.990120 AGCCAAATTTGCACTCTCTTTAT 57.010 34.783 12.92 0.00 0.00 1.40
67 68 6.892658 TTAGCCAAATTTGCACTCTCTTTA 57.107 33.333 12.92 0.00 0.00 1.85
68 69 5.789643 TTAGCCAAATTTGCACTCTCTTT 57.210 34.783 12.92 0.00 0.00 2.52
69 70 5.713861 AGATTAGCCAAATTTGCACTCTCTT 59.286 36.000 12.92 0.00 0.00 2.85
70 71 5.259632 AGATTAGCCAAATTTGCACTCTCT 58.740 37.500 12.92 13.13 0.00 3.10
71 72 5.573337 AGATTAGCCAAATTTGCACTCTC 57.427 39.130 12.92 11.47 0.00 3.20
72 73 6.604795 ACATAGATTAGCCAAATTTGCACTCT 59.395 34.615 12.92 11.10 0.00 3.24
73 74 6.694411 CACATAGATTAGCCAAATTTGCACTC 59.306 38.462 12.92 4.85 0.00 3.51
74 75 6.567050 CACATAGATTAGCCAAATTTGCACT 58.433 36.000 12.92 13.66 0.00 4.40
75 76 5.232838 GCACATAGATTAGCCAAATTTGCAC 59.767 40.000 12.92 6.97 0.00 4.57
76 77 5.105432 TGCACATAGATTAGCCAAATTTGCA 60.105 36.000 12.92 0.07 0.00 4.08
77 78 5.350633 TGCACATAGATTAGCCAAATTTGC 58.649 37.500 12.92 8.39 0.00 3.68
78 79 8.570488 TCTATGCACATAGATTAGCCAAATTTG 58.430 33.333 14.85 11.40 43.39 2.32
79 80 8.696043 TCTATGCACATAGATTAGCCAAATTT 57.304 30.769 14.85 0.00 43.39 1.82
91 92 5.052481 GCAGTCAATGTCTATGCACATAGA 58.948 41.667 14.85 14.85 45.35 1.98
92 93 4.812626 TGCAGTCAATGTCTATGCACATAG 59.187 41.667 10.79 10.79 41.65 2.23
93 94 4.768583 TGCAGTCAATGTCTATGCACATA 58.231 39.130 0.00 0.00 41.65 2.29
94 95 3.613030 TGCAGTCAATGTCTATGCACAT 58.387 40.909 0.00 0.00 41.65 3.21
95 96 3.056588 TGCAGTCAATGTCTATGCACA 57.943 42.857 0.00 0.00 41.65 4.57
97 98 2.001872 CGTGCAGTCAATGTCTATGCA 58.998 47.619 0.00 0.00 44.10 3.96
98 99 2.270923 TCGTGCAGTCAATGTCTATGC 58.729 47.619 0.00 0.00 37.40 3.14
99 100 4.366586 AGATCGTGCAGTCAATGTCTATG 58.633 43.478 0.00 0.00 0.00 2.23
100 101 4.662468 AGATCGTGCAGTCAATGTCTAT 57.338 40.909 0.00 0.00 0.00 1.98
101 102 4.082245 TGAAGATCGTGCAGTCAATGTCTA 60.082 41.667 0.00 0.00 0.00 2.59
102 103 3.257393 GAAGATCGTGCAGTCAATGTCT 58.743 45.455 0.00 0.00 0.00 3.41
103 104 2.995939 TGAAGATCGTGCAGTCAATGTC 59.004 45.455 0.00 0.00 0.00 3.06
104 105 3.044235 TGAAGATCGTGCAGTCAATGT 57.956 42.857 0.00 0.00 0.00 2.71
105 106 4.408993 TTTGAAGATCGTGCAGTCAATG 57.591 40.909 0.00 0.00 0.00 2.82
106 107 4.516698 ACTTTTGAAGATCGTGCAGTCAAT 59.483 37.500 0.00 0.00 0.00 2.57
107 108 3.876914 ACTTTTGAAGATCGTGCAGTCAA 59.123 39.130 0.00 0.00 0.00 3.18
108 109 3.466836 ACTTTTGAAGATCGTGCAGTCA 58.533 40.909 0.00 0.00 0.00 3.41
109 110 5.591643 TTACTTTTGAAGATCGTGCAGTC 57.408 39.130 0.00 0.00 0.00 3.51
110 111 6.560253 ATTTACTTTTGAAGATCGTGCAGT 57.440 33.333 0.00 0.00 0.00 4.40
111 112 7.858052 AAATTTACTTTTGAAGATCGTGCAG 57.142 32.000 0.00 0.00 0.00 4.41
112 113 8.346300 TGTAAATTTACTTTTGAAGATCGTGCA 58.654 29.630 24.81 0.54 34.77 4.57
113 114 8.722342 TGTAAATTTACTTTTGAAGATCGTGC 57.278 30.769 24.81 0.00 34.77 5.34
114 115 9.878599 ACTGTAAATTTACTTTTGAAGATCGTG 57.121 29.630 24.81 0.00 34.77 4.35
122 123 9.643735 TCCCCTAAACTGTAAATTTACTTTTGA 57.356 29.630 24.81 15.02 34.77 2.69
127 128 9.404848 GCTATTCCCCTAAACTGTAAATTTACT 57.595 33.333 24.81 10.57 34.77 2.24
128 129 9.404848 AGCTATTCCCCTAAACTGTAAATTTAC 57.595 33.333 19.44 19.44 0.00 2.01
133 134 9.443365 AGTATAGCTATTCCCCTAAACTGTAAA 57.557 33.333 12.39 0.00 0.00 2.01
136 137 9.617053 AATAGTATAGCTATTCCCCTAAACTGT 57.383 33.333 12.39 2.20 44.68 3.55
150 151 9.955102 TCGTCCAGAAGATTAATAGTATAGCTA 57.045 33.333 0.00 0.00 0.00 3.32
151 152 8.865420 TCGTCCAGAAGATTAATAGTATAGCT 57.135 34.615 0.00 0.00 0.00 3.32
152 153 9.509855 CATCGTCCAGAAGATTAATAGTATAGC 57.490 37.037 0.00 0.00 0.00 2.97
154 155 8.467598 GCCATCGTCCAGAAGATTAATAGTATA 58.532 37.037 0.00 0.00 0.00 1.47
155 156 7.324178 GCCATCGTCCAGAAGATTAATAGTAT 58.676 38.462 0.00 0.00 0.00 2.12
156 157 6.569801 CGCCATCGTCCAGAAGATTAATAGTA 60.570 42.308 0.00 0.00 0.00 1.82
157 158 5.542779 GCCATCGTCCAGAAGATTAATAGT 58.457 41.667 0.00 0.00 0.00 2.12
158 159 4.623167 CGCCATCGTCCAGAAGATTAATAG 59.377 45.833 0.00 0.00 0.00 1.73
159 160 4.279922 TCGCCATCGTCCAGAAGATTAATA 59.720 41.667 0.00 0.00 36.96 0.98
160 161 3.069586 TCGCCATCGTCCAGAAGATTAAT 59.930 43.478 0.00 0.00 36.96 1.40
161 162 2.429250 TCGCCATCGTCCAGAAGATTAA 59.571 45.455 0.00 0.00 36.96 1.40
162 163 2.028876 TCGCCATCGTCCAGAAGATTA 58.971 47.619 0.00 0.00 36.96 1.75
163 164 0.824109 TCGCCATCGTCCAGAAGATT 59.176 50.000 0.00 0.00 36.96 2.40
164 165 0.103208 GTCGCCATCGTCCAGAAGAT 59.897 55.000 0.00 0.00 36.96 2.40
165 166 1.248101 TGTCGCCATCGTCCAGAAGA 61.248 55.000 0.00 0.00 36.96 2.87
166 167 0.179100 ATGTCGCCATCGTCCAGAAG 60.179 55.000 0.00 0.00 36.96 2.85
167 168 0.249120 AATGTCGCCATCGTCCAGAA 59.751 50.000 0.00 0.00 36.96 3.02
168 169 0.249120 AAATGTCGCCATCGTCCAGA 59.751 50.000 0.00 0.00 36.96 3.86
169 170 1.860950 CTAAATGTCGCCATCGTCCAG 59.139 52.381 0.00 0.00 36.96 3.86
170 171 1.934589 CTAAATGTCGCCATCGTCCA 58.065 50.000 0.00 0.00 36.96 4.02
171 172 0.582005 GCTAAATGTCGCCATCGTCC 59.418 55.000 0.00 0.00 36.96 4.79
172 173 0.582005 GGCTAAATGTCGCCATCGTC 59.418 55.000 0.00 0.00 45.59 4.20
173 174 2.690326 GGCTAAATGTCGCCATCGT 58.310 52.632 0.00 0.00 45.59 3.73
178 179 3.003378 GTGGATTTAGGCTAAATGTCGCC 59.997 47.826 31.39 25.29 46.65 5.54
179 180 3.303132 CGTGGATTTAGGCTAAATGTCGC 60.303 47.826 31.39 25.41 38.42 5.19
180 181 4.116961 TCGTGGATTTAGGCTAAATGTCG 58.883 43.478 31.39 27.55 38.42 4.35
181 182 5.353123 TGTTCGTGGATTTAGGCTAAATGTC 59.647 40.000 31.39 23.03 38.42 3.06
182 183 5.250200 TGTTCGTGGATTTAGGCTAAATGT 58.750 37.500 31.39 14.16 38.42 2.71
183 184 5.584649 TCTGTTCGTGGATTTAGGCTAAATG 59.415 40.000 31.39 19.14 38.42 2.32
184 185 5.741011 TCTGTTCGTGGATTTAGGCTAAAT 58.259 37.500 27.85 27.85 40.84 1.40
185 186 5.155278 TCTGTTCGTGGATTTAGGCTAAA 57.845 39.130 21.05 21.05 0.00 1.85
186 187 4.811969 TCTGTTCGTGGATTTAGGCTAA 57.188 40.909 2.04 2.04 0.00 3.09
187 188 4.811969 TTCTGTTCGTGGATTTAGGCTA 57.188 40.909 0.00 0.00 0.00 3.93
188 189 3.695830 TTCTGTTCGTGGATTTAGGCT 57.304 42.857 0.00 0.00 0.00 4.58
189 190 4.215613 AGTTTTCTGTTCGTGGATTTAGGC 59.784 41.667 0.00 0.00 0.00 3.93
190 191 5.334879 CCAGTTTTCTGTTCGTGGATTTAGG 60.335 44.000 0.00 0.00 45.68 2.69
191 192 5.334879 CCCAGTTTTCTGTTCGTGGATTTAG 60.335 44.000 0.00 0.00 45.68 1.85
192 193 4.517453 CCCAGTTTTCTGTTCGTGGATTTA 59.483 41.667 0.00 0.00 45.68 1.40
200 201 6.796705 AAGTAATACCCAGTTTTCTGTTCG 57.203 37.500 0.00 0.00 45.68 3.95
362 1265 0.534427 GCCGGTTATTAGGACCTGCC 60.534 60.000 3.53 0.00 40.30 4.85
363 1266 0.534427 GGCCGGTTATTAGGACCTGC 60.534 60.000 3.53 0.00 43.93 4.85
364 1267 1.129058 AGGCCGGTTATTAGGACCTG 58.871 55.000 3.53 0.00 35.72 4.00
365 1268 1.767088 GAAGGCCGGTTATTAGGACCT 59.233 52.381 1.90 0.00 35.72 3.85
425 1332 6.329496 GCATAGTTAAGCCATTGTTTAGCAA 58.671 36.000 0.00 0.00 41.89 3.91
444 1355 2.800544 CCCAAAACGTATCCTCGCATAG 59.199 50.000 0.00 0.00 0.00 2.23
452 1363 3.502979 TGTGCTTAACCCAAAACGTATCC 59.497 43.478 0.00 0.00 0.00 2.59
525 1437 0.886490 GCTAGGGAATCGGCCATGTG 60.886 60.000 2.24 0.00 0.00 3.21
526 1438 1.451936 GCTAGGGAATCGGCCATGT 59.548 57.895 2.24 0.00 0.00 3.21
527 1439 1.669115 CGCTAGGGAATCGGCCATG 60.669 63.158 2.24 0.00 0.00 3.66
528 1440 1.194781 ATCGCTAGGGAATCGGCCAT 61.195 55.000 14.09 0.00 0.00 4.40
529 1441 1.407656 AATCGCTAGGGAATCGGCCA 61.408 55.000 14.09 0.00 0.00 5.36
530 1442 0.606604 TAATCGCTAGGGAATCGGCC 59.393 55.000 14.09 0.00 0.00 6.13
531 1443 2.450609 TTAATCGCTAGGGAATCGGC 57.549 50.000 14.09 0.00 0.00 5.54
538 1594 8.301730 TCGTGTTAATTAATTAATCGCTAGGG 57.698 34.615 25.82 0.00 35.02 3.53
555 1611 8.166066 CACTTGTTTATGATCGATTCGTGTTAA 58.834 33.333 5.89 0.00 0.00 2.01
556 1612 7.542824 TCACTTGTTTATGATCGATTCGTGTTA 59.457 33.333 5.89 0.00 0.00 2.41
557 1613 6.367695 TCACTTGTTTATGATCGATTCGTGTT 59.632 34.615 5.89 0.00 0.00 3.32
558 1614 5.867174 TCACTTGTTTATGATCGATTCGTGT 59.133 36.000 5.89 0.00 0.00 4.49
561 1617 5.005682 TGCTCACTTGTTTATGATCGATTCG 59.994 40.000 0.00 0.00 0.00 3.34
563 1619 6.238566 CCATGCTCACTTGTTTATGATCGATT 60.239 38.462 0.00 0.00 0.00 3.34
567 1623 5.505324 GCTCCATGCTCACTTGTTTATGATC 60.505 44.000 0.00 0.00 38.95 2.92
571 1627 3.689347 TGCTCCATGCTCACTTGTTTAT 58.311 40.909 0.00 0.00 43.37 1.40
621 1677 1.014352 CCCAACTAATTAAGCGCGCT 58.986 50.000 31.32 31.32 0.00 5.92
624 1680 1.065551 CCTGCCCAACTAATTAAGCGC 59.934 52.381 0.00 0.00 0.00 5.92
625 1681 2.639065 TCCTGCCCAACTAATTAAGCG 58.361 47.619 0.00 0.00 0.00 4.68
639 1695 1.106285 GGATGTGGATTGTTCCTGCC 58.894 55.000 0.00 0.00 43.07 4.85
644 1700 3.859386 GCAATTTCGGATGTGGATTGTTC 59.141 43.478 0.00 0.00 31.96 3.18
645 1701 3.511146 AGCAATTTCGGATGTGGATTGTT 59.489 39.130 0.00 0.00 31.96 2.83
647 1703 3.788333 AGCAATTTCGGATGTGGATTG 57.212 42.857 0.00 0.00 0.00 2.67
648 1704 4.806640 AAAGCAATTTCGGATGTGGATT 57.193 36.364 0.00 0.00 0.00 3.01
649 1705 4.201910 CGTAAAGCAATTTCGGATGTGGAT 60.202 41.667 0.00 0.00 0.00 3.41
650 1706 3.126171 CGTAAAGCAATTTCGGATGTGGA 59.874 43.478 0.00 0.00 0.00 4.02
651 1707 3.425404 CGTAAAGCAATTTCGGATGTGG 58.575 45.455 0.00 0.00 0.00 4.17
658 1714 2.156117 TGTCGTCCGTAAAGCAATTTCG 59.844 45.455 0.00 0.00 0.00 3.46
659 1715 3.185797 AGTGTCGTCCGTAAAGCAATTTC 59.814 43.478 0.00 0.00 0.00 2.17
660 1716 3.059188 CAGTGTCGTCCGTAAAGCAATTT 60.059 43.478 0.00 0.00 0.00 1.82
661 1717 2.478894 CAGTGTCGTCCGTAAAGCAATT 59.521 45.455 0.00 0.00 0.00 2.32
662 1718 2.066262 CAGTGTCGTCCGTAAAGCAAT 58.934 47.619 0.00 0.00 0.00 3.56
663 1719 1.493772 CAGTGTCGTCCGTAAAGCAA 58.506 50.000 0.00 0.00 0.00 3.91
664 1720 0.942410 GCAGTGTCGTCCGTAAAGCA 60.942 55.000 0.00 0.00 0.00 3.91
665 1721 1.623973 GGCAGTGTCGTCCGTAAAGC 61.624 60.000 0.00 0.00 0.00 3.51
666 1722 1.012486 GGGCAGTGTCGTCCGTAAAG 61.012 60.000 0.00 0.00 0.00 1.85
667 1723 1.005867 GGGCAGTGTCGTCCGTAAA 60.006 57.895 0.00 0.00 0.00 2.01
668 1724 2.652530 GGGCAGTGTCGTCCGTAA 59.347 61.111 0.00 0.00 0.00 3.18
669 1725 3.740397 CGGGCAGTGTCGTCCGTA 61.740 66.667 0.00 0.00 37.92 4.02
682 1738 4.785453 CTTCCAGGTCCTGCGGGC 62.785 72.222 13.99 1.54 0.00 6.13
683 1739 4.785453 GCTTCCAGGTCCTGCGGG 62.785 72.222 13.99 4.71 0.00 6.13
685 1741 2.016393 TATCGCTTCCAGGTCCTGCG 62.016 60.000 13.99 13.82 46.71 5.18
686 1742 0.530870 GTATCGCTTCCAGGTCCTGC 60.531 60.000 13.99 0.73 0.00 4.85
687 1743 1.115467 AGTATCGCTTCCAGGTCCTG 58.885 55.000 12.40 12.40 0.00 3.86
688 1744 1.757699 GAAGTATCGCTTCCAGGTCCT 59.242 52.381 0.00 0.00 45.95 3.85
689 1745 2.226602 GAAGTATCGCTTCCAGGTCC 57.773 55.000 0.00 0.00 45.95 4.46
697 1753 1.134788 CGTTGGGAGGAAGTATCGCTT 60.135 52.381 0.00 0.00 40.76 4.68
698 1754 0.460311 CGTTGGGAGGAAGTATCGCT 59.540 55.000 0.00 0.00 0.00 4.93
699 1755 0.529992 CCGTTGGGAGGAAGTATCGC 60.530 60.000 0.00 0.00 34.06 4.58
700 1756 0.529992 GCCGTTGGGAGGAAGTATCG 60.530 60.000 0.00 0.00 34.06 2.92
701 1757 0.831307 AGCCGTTGGGAGGAAGTATC 59.169 55.000 0.00 0.00 34.06 2.24
702 1758 0.831307 GAGCCGTTGGGAGGAAGTAT 59.169 55.000 0.00 0.00 34.06 2.12
703 1759 0.252103 AGAGCCGTTGGGAGGAAGTA 60.252 55.000 0.00 0.00 34.06 2.24
704 1760 0.252103 TAGAGCCGTTGGGAGGAAGT 60.252 55.000 0.00 0.00 34.06 3.01
705 1761 0.902531 TTAGAGCCGTTGGGAGGAAG 59.097 55.000 0.00 0.00 34.06 3.46
706 1762 0.902531 CTTAGAGCCGTTGGGAGGAA 59.097 55.000 0.00 0.00 34.06 3.36
707 1763 1.614241 GCTTAGAGCCGTTGGGAGGA 61.614 60.000 0.00 0.00 34.48 3.71
708 1764 1.153349 GCTTAGAGCCGTTGGGAGG 60.153 63.158 0.00 0.00 34.48 4.30
709 1765 0.179000 ATGCTTAGAGCCGTTGGGAG 59.821 55.000 0.00 0.00 41.51 4.30
710 1766 0.178068 GATGCTTAGAGCCGTTGGGA 59.822 55.000 0.00 0.00 41.51 4.37
711 1767 0.107703 TGATGCTTAGAGCCGTTGGG 60.108 55.000 0.00 0.00 41.51 4.12
712 1768 1.293924 CTGATGCTTAGAGCCGTTGG 58.706 55.000 0.00 0.00 41.51 3.77
713 1769 0.654683 GCTGATGCTTAGAGCCGTTG 59.345 55.000 0.00 0.00 41.51 4.10
714 1770 0.462759 GGCTGATGCTTAGAGCCGTT 60.463 55.000 6.42 0.00 42.84 4.44
715 1771 1.144936 GGCTGATGCTTAGAGCCGT 59.855 57.895 6.42 0.00 42.84 5.68
716 1772 4.040068 GGCTGATGCTTAGAGCCG 57.960 61.111 6.42 0.00 42.84 5.52
718 1774 3.012518 TCTTTTGGCTGATGCTTAGAGC 58.987 45.455 0.00 0.00 42.82 4.09
719 1775 5.633830 TTTCTTTTGGCTGATGCTTAGAG 57.366 39.130 0.00 0.00 39.59 2.43
720 1776 6.183360 TGTTTTTCTTTTGGCTGATGCTTAGA 60.183 34.615 0.00 0.00 39.59 2.10
721 1777 5.984926 TGTTTTTCTTTTGGCTGATGCTTAG 59.015 36.000 0.00 0.00 39.59 2.18
722 1778 5.911752 TGTTTTTCTTTTGGCTGATGCTTA 58.088 33.333 0.00 0.00 39.59 3.09
723 1779 4.768583 TGTTTTTCTTTTGGCTGATGCTT 58.231 34.783 0.00 0.00 39.59 3.91
724 1780 4.405116 TGTTTTTCTTTTGGCTGATGCT 57.595 36.364 0.00 0.00 39.59 3.79
725 1781 5.678132 ATTGTTTTTCTTTTGGCTGATGC 57.322 34.783 0.00 0.00 38.76 3.91
726 1782 5.910723 GCAATTGTTTTTCTTTTGGCTGATG 59.089 36.000 7.40 0.00 0.00 3.07
727 1783 5.008911 GGCAATTGTTTTTCTTTTGGCTGAT 59.991 36.000 7.40 0.00 39.11 2.90
728 1784 4.335037 GGCAATTGTTTTTCTTTTGGCTGA 59.665 37.500 7.40 0.00 39.11 4.26
729 1785 4.600032 GGCAATTGTTTTTCTTTTGGCTG 58.400 39.130 7.40 0.00 39.11 4.85
730 1786 4.525996 AGGCAATTGTTTTTCTTTTGGCT 58.474 34.783 7.40 4.44 45.07 4.75
731 1787 4.335037 TGAGGCAATTGTTTTTCTTTTGGC 59.665 37.500 7.40 0.00 41.57 4.52
732 1788 6.432107 CATGAGGCAATTGTTTTTCTTTTGG 58.568 36.000 7.40 0.00 0.00 3.28
733 1789 5.910723 GCATGAGGCAATTGTTTTTCTTTTG 59.089 36.000 7.40 2.40 43.97 2.44
734 1790 5.277442 CGCATGAGGCAATTGTTTTTCTTTT 60.277 36.000 7.40 0.00 45.17 2.27
735 1791 4.211794 CGCATGAGGCAATTGTTTTTCTTT 59.788 37.500 7.40 0.00 45.17 2.52
736 1792 3.742369 CGCATGAGGCAATTGTTTTTCTT 59.258 39.130 7.40 0.00 45.17 2.52
737 1793 3.319755 CGCATGAGGCAATTGTTTTTCT 58.680 40.909 7.40 0.00 45.17 2.52
738 1794 2.159801 GCGCATGAGGCAATTGTTTTTC 60.160 45.455 0.30 1.07 45.17 2.29
739 1795 1.799994 GCGCATGAGGCAATTGTTTTT 59.200 42.857 0.30 0.00 45.17 1.94
740 1796 1.270199 TGCGCATGAGGCAATTGTTTT 60.270 42.857 5.66 0.00 45.17 2.43
741 1797 0.317799 TGCGCATGAGGCAATTGTTT 59.682 45.000 5.66 0.00 45.17 2.83
742 1798 0.388907 GTGCGCATGAGGCAATTGTT 60.389 50.000 15.91 0.00 45.17 2.83
743 1799 1.213537 GTGCGCATGAGGCAATTGT 59.786 52.632 15.91 0.00 45.17 2.71
744 1800 0.800683 CAGTGCGCATGAGGCAATTG 60.801 55.000 15.91 0.00 45.17 2.32
745 1801 1.246056 ACAGTGCGCATGAGGCAATT 61.246 50.000 15.91 3.26 45.17 2.32
746 1802 1.246056 AACAGTGCGCATGAGGCAAT 61.246 50.000 15.91 9.50 45.17 3.56
747 1803 1.898094 AACAGTGCGCATGAGGCAA 60.898 52.632 15.91 0.00 45.17 4.52
748 1804 2.281692 AACAGTGCGCATGAGGCA 60.282 55.556 15.91 7.68 45.17 4.75
749 1805 2.177531 CAACAGTGCGCATGAGGC 59.822 61.111 15.91 0.00 39.90 4.70
750 1806 1.968017 ACCAACAGTGCGCATGAGG 60.968 57.895 15.91 19.84 0.00 3.86
751 1807 1.208358 CACCAACAGTGCGCATGAG 59.792 57.895 15.91 9.44 40.28 2.90
752 1808 3.342909 CACCAACAGTGCGCATGA 58.657 55.556 15.91 0.00 40.28 3.07
766 1822 2.027625 GACTGTACGTGGCAGCACC 61.028 63.158 17.96 7.49 37.47 5.01
767 1823 0.670546 ATGACTGTACGTGGCAGCAC 60.671 55.000 17.96 13.73 37.47 4.40
771 1827 0.901827 ATGGATGACTGTACGTGGCA 59.098 50.000 0.00 0.00 0.00 4.92
781 1837 1.228063 GGCCGATGCATGGATGACT 60.228 57.895 10.66 0.00 40.13 3.41
782 1838 2.610694 CGGCCGATGCATGGATGAC 61.611 63.158 24.07 0.00 40.13 3.06
783 1839 2.281002 CGGCCGATGCATGGATGA 60.281 61.111 24.07 0.00 40.13 2.92
784 1840 4.034258 GCGGCCGATGCATGGATG 62.034 66.667 33.48 6.52 40.13 3.51
786 1842 4.792804 TTGCGGCCGATGCATGGA 62.793 61.111 33.48 0.00 42.84 3.41
792 1848 1.154225 GACAAACTTGCGGCCGATG 60.154 57.895 33.48 19.83 0.00 3.84
794 1850 3.342627 CGACAAACTTGCGGCCGA 61.343 61.111 33.48 11.82 0.00 5.54
796 1852 2.051345 CACGACAAACTTGCGGCC 60.051 61.111 0.00 0.00 33.95 6.13
797 1853 1.654137 CACACGACAAACTTGCGGC 60.654 57.895 0.00 0.00 33.95 6.53
800 1856 3.185594 TGCTATACACACGACAAACTTGC 59.814 43.478 0.00 0.00 0.00 4.01
801 1857 4.983215 TGCTATACACACGACAAACTTG 57.017 40.909 0.00 0.00 0.00 3.16
802 1858 4.812091 TGTTGCTATACACACGACAAACTT 59.188 37.500 0.00 0.00 0.00 2.66
804 1860 4.451557 GTGTTGCTATACACACGACAAAC 58.548 43.478 10.93 0.00 46.00 2.93
805 1861 4.718858 GTGTTGCTATACACACGACAAA 57.281 40.909 10.93 0.00 46.00 2.83
813 1869 4.503910 TGTGGATGAGTGTTGCTATACAC 58.496 43.478 8.62 8.62 46.86 2.90
814 1870 4.817318 TGTGGATGAGTGTTGCTATACA 57.183 40.909 0.00 0.00 0.00 2.29
815 1871 4.752101 GGATGTGGATGAGTGTTGCTATAC 59.248 45.833 0.00 0.00 0.00 1.47
816 1872 4.408596 TGGATGTGGATGAGTGTTGCTATA 59.591 41.667 0.00 0.00 0.00 1.31
817 1873 3.200605 TGGATGTGGATGAGTGTTGCTAT 59.799 43.478 0.00 0.00 0.00 2.97
818 1874 2.571202 TGGATGTGGATGAGTGTTGCTA 59.429 45.455 0.00 0.00 0.00 3.49
819 1875 1.352017 TGGATGTGGATGAGTGTTGCT 59.648 47.619 0.00 0.00 0.00 3.91
820 1876 1.825090 TGGATGTGGATGAGTGTTGC 58.175 50.000 0.00 0.00 0.00 4.17
821 1877 2.686405 CCATGGATGTGGATGAGTGTTG 59.314 50.000 5.56 0.00 42.02 3.33
822 1878 2.577563 TCCATGGATGTGGATGAGTGTT 59.422 45.455 11.44 0.00 43.20 3.32
823 1879 2.199208 TCCATGGATGTGGATGAGTGT 58.801 47.619 11.44 0.00 43.20 3.55
889 1948 1.664965 GGAGACTGTGCGTGTGGAC 60.665 63.158 0.00 0.00 36.89 4.02
890 1949 1.681486 TTGGAGACTGTGCGTGTGGA 61.681 55.000 0.00 0.00 0.00 4.02
891 1950 1.227527 TTGGAGACTGTGCGTGTGG 60.228 57.895 0.00 0.00 0.00 4.17
892 1951 1.498865 GGTTGGAGACTGTGCGTGTG 61.499 60.000 0.00 0.00 0.00 3.82
893 1952 1.227556 GGTTGGAGACTGTGCGTGT 60.228 57.895 0.00 0.00 0.00 4.49
894 1953 0.603707 ATGGTTGGAGACTGTGCGTG 60.604 55.000 0.00 0.00 0.00 5.34
895 1954 0.108585 AATGGTTGGAGACTGTGCGT 59.891 50.000 0.00 0.00 0.00 5.24
896 1955 2.093306 TAATGGTTGGAGACTGTGCG 57.907 50.000 0.00 0.00 0.00 5.34
897 1956 4.037446 TGTTTTAATGGTTGGAGACTGTGC 59.963 41.667 0.00 0.00 0.00 4.57
928 1987 3.103447 TGACGAGAAGATGCATCCATC 57.897 47.619 23.06 20.15 46.61 3.51
962 2025 1.669999 GATGGGTGCTTGGTCCATGC 61.670 60.000 20.28 20.28 40.96 4.06
998 2101 3.184581 GTGCGCGGGAAATTCTTATAGAG 59.815 47.826 8.83 0.00 0.00 2.43
999 2102 3.128349 GTGCGCGGGAAATTCTTATAGA 58.872 45.455 8.83 0.00 0.00 1.98
1000 2103 2.223377 GGTGCGCGGGAAATTCTTATAG 59.777 50.000 8.83 0.00 0.00 1.31
1001 2104 2.215196 GGTGCGCGGGAAATTCTTATA 58.785 47.619 8.83 0.00 0.00 0.98
1025 2132 0.320858 TTGTTTGCATGCATGGGCTG 60.321 50.000 27.34 4.17 41.91 4.85
1057 2170 1.000394 TGACGTGATGTGTGTGGGTAG 60.000 52.381 0.00 0.00 0.00 3.18
1058 2171 1.041437 TGACGTGATGTGTGTGGGTA 58.959 50.000 0.00 0.00 0.00 3.69
1059 2172 0.179234 TTGACGTGATGTGTGTGGGT 59.821 50.000 0.00 0.00 0.00 4.51
1060 2173 1.264020 CTTTGACGTGATGTGTGTGGG 59.736 52.381 0.00 0.00 0.00 4.61
1074 2203 0.665369 ATTGCTTGCTGCGCTTTGAC 60.665 50.000 9.73 0.00 46.63 3.18
1122 2261 2.818714 CGGGAGAAGCAGCAGCAG 60.819 66.667 3.17 0.00 45.49 4.24
1748 2887 2.103042 GCAGTAGTTGGGCAGCTCG 61.103 63.158 0.00 0.00 0.00 5.03
1787 2926 0.609662 TGCAGCTGCTGTAGATCACA 59.390 50.000 36.61 14.49 42.66 3.58
2051 3203 9.559958 CTTATTATTTTGCACTTCACGAGAATT 57.440 29.630 0.00 0.00 32.31 2.17
2052 3204 7.698130 GCTTATTATTTTGCACTTCACGAGAAT 59.302 33.333 0.00 0.00 32.31 2.40
2053 3205 7.021196 GCTTATTATTTTGCACTTCACGAGAA 58.979 34.615 0.00 0.00 0.00 2.87
2079 3258 6.015772 ACAAACAACCACGAGGCTATTATTTT 60.016 34.615 0.00 0.00 39.06 1.82
2115 3294 7.763172 TTGCACGAAATTTATTTTCACAAGT 57.237 28.000 0.00 0.00 43.32 3.16
2146 3329 9.971744 GTTTTGCAAATATGGAAATTACATGAC 57.028 29.630 13.65 0.00 44.81 3.06
2254 3444 7.327275 CACTCTACCATTATAAGCATCTTCGAC 59.673 40.741 0.00 0.00 0.00 4.20
2271 3463 2.235898 TGCATGCACATACACTCTACCA 59.764 45.455 18.46 0.00 0.00 3.25
2282 3474 5.299949 TCGTCTCTATAAATGCATGCACAT 58.700 37.500 25.37 18.26 0.00 3.21
2315 3507 0.365523 CGAAGCCGTTCACATACACG 59.634 55.000 0.00 0.00 36.12 4.49
2326 3518 4.489249 CGGTACAATCGAAGCCGT 57.511 55.556 0.00 0.00 37.87 5.68
2375 3568 4.986034 TCAAAATTGCAATCAACTGCTCTG 59.014 37.500 13.38 0.00 43.07 3.35
2507 3700 4.835891 CCGACCGCCCCTCTAGGT 62.836 72.222 0.00 0.00 41.63 3.08
2567 3784 2.688666 AGGAGCGAGGCCCATTGA 60.689 61.111 0.00 0.00 0.00 2.57
2751 3968 2.716217 GTGAGCTAGAGCACCCAAATT 58.284 47.619 4.01 0.00 45.16 1.82
2772 3989 2.412089 GAACACCTCGTGTGCATAGAAC 59.588 50.000 0.00 0.00 46.79 3.01
2836 4054 1.251527 TGGAGCTTGGAGGTCGAGTC 61.252 60.000 0.00 0.00 43.29 3.36
2860 4080 4.142004 GCTAAACCTAGACAAATCTCGGGA 60.142 45.833 0.00 0.00 41.26 5.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.