Multiple sequence alignment - TraesCS1A01G035000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G035000 chr1A 100.000 5548 0 0 1 5548 18294816 18289269 0.000000e+00 10246.0
1 TraesCS1A01G035000 chr1B 94.075 1654 85 4 2974 4622 30881030 30879385 0.000000e+00 2499.0
2 TraesCS1A01G035000 chr1B 90.508 1201 77 22 1773 2942 30882210 30881016 0.000000e+00 1552.0
3 TraesCS1A01G035000 chr1B 94.240 816 35 7 904 1717 30883201 30882396 0.000000e+00 1236.0
4 TraesCS1A01G035000 chr1B 88.462 416 37 7 4901 5313 30879141 30878734 4.990000e-135 492.0
5 TraesCS1A01G035000 chr1B 86.184 304 21 9 404 707 24771885 24771603 5.400000e-80 309.0
6 TraesCS1A01G035000 chr1B 81.921 177 17 9 4625 4787 30879346 30879171 9.690000e-28 135.0
7 TraesCS1A01G035000 chr1D 94.853 952 43 3 2974 3925 16970766 16969821 0.000000e+00 1482.0
8 TraesCS1A01G035000 chr1D 96.680 723 18 1 904 1620 16972797 16972075 0.000000e+00 1197.0
9 TraesCS1A01G035000 chr1D 93.901 705 31 3 3923 4622 16966543 16965846 0.000000e+00 1053.0
10 TraesCS1A01G035000 chr1D 94.003 617 34 3 2328 2942 16971367 16970752 0.000000e+00 931.0
11 TraesCS1A01G035000 chr1D 83.758 825 83 29 4748 5536 16965642 16964833 0.000000e+00 734.0
12 TraesCS1A01G035000 chr1D 87.107 605 47 19 3291 3888 17012310 17012890 0.000000e+00 656.0
13 TraesCS1A01G035000 chr1D 88.000 550 43 10 3925 4452 17012890 17013438 3.650000e-176 628.0
14 TraesCS1A01G035000 chr1D 85.484 620 64 10 4934 5536 16962418 16961808 1.700000e-174 623.0
15 TraesCS1A01G035000 chr1D 89.969 319 20 7 39 353 16973633 16973323 8.660000e-108 401.0
16 TraesCS1A01G035000 chr1D 86.435 317 38 4 4905 5217 17013889 17014204 5.320000e-90 342.0
17 TraesCS1A01G035000 chr1D 85.256 156 20 3 742 897 16972993 16972841 2.070000e-34 158.0
18 TraesCS1A01G035000 chr1D 93.506 77 3 1 4625 4699 16965807 16965731 4.540000e-21 113.0
19 TraesCS1A01G035000 chr1D 89.247 93 5 3 352 443 16973226 16973138 1.630000e-20 111.0
20 TraesCS1A01G035000 chr7D 79.743 311 46 10 4903 5198 606955976 606956284 5.630000e-50 209.0
21 TraesCS1A01G035000 chr7D 83.099 213 35 1 4984 5196 606946214 606946425 5.670000e-45 193.0
22 TraesCS1A01G035000 chr7B 85.149 202 28 2 4990 5191 693004695 693004496 7.290000e-49 206.0
23 TraesCS1A01G035000 chr7A 79.470 302 46 8 4909 5196 699387244 699386945 3.390000e-47 200.0
24 TraesCS1A01G035000 chr7A 84.080 201 26 5 4990 5187 699418986 699418789 7.340000e-44 189.0
25 TraesCS1A01G035000 chr4B 100.000 29 0 0 2943 2971 10408170 10408198 3.000000e-03 54.7
26 TraesCS1A01G035000 chr6A 100.000 28 0 0 2946 2973 600778859 600778886 1.000000e-02 52.8
27 TraesCS1A01G035000 chr5A 100.000 28 0 0 2946 2973 208305725 208305752 1.000000e-02 52.8
28 TraesCS1A01G035000 chr2B 100.000 28 0 0 2946 2973 390632729 390632702 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G035000 chr1A 18289269 18294816 5547 True 10246.0 10246 100.000000 1 5548 1 chr1A.!!$R1 5547
1 TraesCS1A01G035000 chr1B 30878734 30883201 4467 True 1182.8 2499 89.841200 904 5313 5 chr1B.!!$R2 4409
2 TraesCS1A01G035000 chr1D 16961808 16973633 11825 True 680.3 1482 90.665700 39 5536 10 chr1D.!!$R1 5497
3 TraesCS1A01G035000 chr1D 17012310 17014204 1894 False 542.0 656 87.180667 3291 5217 3 chr1D.!!$F1 1926

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
837 1002 0.036483 TATTCACTTCGGCAGCTGCA 60.036 50.0 37.63 18.09 44.36 4.41 F
1648 1858 0.249699 TCGAAAGCGCTCAGTTTCCA 60.250 50.0 12.06 0.00 37.46 3.53 F
2050 2472 0.464870 TGGAAAGTTTGGACGTCCGA 59.535 50.0 28.70 25.14 37.55 4.55 F
3860 4294 0.109412 GCAAGGTGATTGAGCTGCAC 60.109 55.0 1.02 0.00 41.83 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2108 2530 0.177604 CTGGGAGGCTACAGCTGAAG 59.822 60.0 23.35 0.00 41.70 3.02 R
2699 3124 0.397254 ATCCGGTCCAGACACCTAGG 60.397 60.0 7.41 7.41 33.77 3.02 R
3982 7697 0.696501 GGAGCCTCCCACCTACAAAA 59.303 55.0 0.00 0.00 0.00 2.44 R
5279 12183 0.102481 CCGTCATCTACTCGTTGGGG 59.898 60.0 0.00 0.00 0.00 4.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.309582 GCAGGGGTGTGCTAGCTA 58.690 61.111 17.23 1.87 40.54 3.32
22 23 1.144936 GCAGGGGTGTGCTAGCTAG 59.855 63.158 16.84 16.84 40.54 3.42
23 24 1.826024 CAGGGGTGTGCTAGCTAGG 59.174 63.158 22.10 4.48 0.00 3.02
24 25 1.383248 AGGGGTGTGCTAGCTAGGG 60.383 63.158 22.10 0.00 0.00 3.53
25 26 1.689582 GGGGTGTGCTAGCTAGGGT 60.690 63.158 22.10 0.00 0.00 4.34
26 27 1.272554 GGGGTGTGCTAGCTAGGGTT 61.273 60.000 22.10 0.00 0.00 4.11
27 28 0.618981 GGGTGTGCTAGCTAGGGTTT 59.381 55.000 22.10 0.00 0.00 3.27
28 29 1.835531 GGGTGTGCTAGCTAGGGTTTA 59.164 52.381 22.10 0.00 0.00 2.01
29 30 2.419713 GGGTGTGCTAGCTAGGGTTTAC 60.420 54.545 22.10 3.35 0.00 2.01
30 31 2.235402 GGTGTGCTAGCTAGGGTTTACA 59.765 50.000 22.10 6.21 0.00 2.41
31 32 3.307199 GGTGTGCTAGCTAGGGTTTACAA 60.307 47.826 22.10 0.13 0.00 2.41
32 33 3.933332 GTGTGCTAGCTAGGGTTTACAAG 59.067 47.826 22.10 0.00 0.00 3.16
33 34 2.937149 GTGCTAGCTAGGGTTTACAAGC 59.063 50.000 22.10 6.86 35.16 4.01
34 35 2.569853 TGCTAGCTAGGGTTTACAAGCA 59.430 45.455 22.10 9.55 37.44 3.91
35 36 3.008594 TGCTAGCTAGGGTTTACAAGCAA 59.991 43.478 22.10 0.00 35.91 3.91
36 37 4.007659 GCTAGCTAGGGTTTACAAGCAAA 58.992 43.478 22.10 0.00 37.44 3.68
37 38 4.095036 GCTAGCTAGGGTTTACAAGCAAAG 59.905 45.833 22.10 0.00 37.44 2.77
48 49 0.320946 CAAGCAAAGCACATTGGGGG 60.321 55.000 0.00 0.00 0.00 5.40
70 71 4.094590 GGAAAGCATCTCTCACATGAACAG 59.905 45.833 0.00 0.00 0.00 3.16
78 79 0.184692 TCACATGAACAGCCCCACAA 59.815 50.000 0.00 0.00 0.00 3.33
91 92 1.617804 CCCCACAATCAAGCTCCATGT 60.618 52.381 0.00 0.00 0.00 3.21
92 93 2.357050 CCCCACAATCAAGCTCCATGTA 60.357 50.000 0.00 0.00 0.00 2.29
93 94 3.355378 CCCACAATCAAGCTCCATGTAA 58.645 45.455 0.00 0.00 0.00 2.41
105 106 6.491714 AGCTCCATGTAATAACATCTCAGT 57.508 37.500 0.00 0.00 44.70 3.41
149 150 7.385778 TCACATGTAGGGCTTACAAAAATAC 57.614 36.000 13.74 0.00 45.00 1.89
160 161 6.384224 GCTTACAAAAATACCTACACAACCC 58.616 40.000 0.00 0.00 0.00 4.11
161 162 6.016108 GCTTACAAAAATACCTACACAACCCA 60.016 38.462 0.00 0.00 0.00 4.51
166 167 8.268605 ACAAAAATACCTACACAACCCATTTTT 58.731 29.630 0.00 0.00 35.57 1.94
202 206 7.952930 ACCGCATATCCTCATATATATCCTCTT 59.047 37.037 0.00 0.00 0.00 2.85
251 255 5.762218 CAGCCTCAATTTATAGACCCTTCAG 59.238 44.000 0.00 0.00 0.00 3.02
258 262 5.957771 TTTATAGACCCTTCAGTCATGCT 57.042 39.130 0.00 0.00 39.34 3.79
283 287 5.008911 TCCAGTATGCAATTCATGTACATGC 59.991 40.000 27.71 19.17 36.63 4.06
287 291 4.048241 TGCAATTCATGTACATGCATGG 57.952 40.909 29.41 21.66 44.54 3.66
288 292 3.700038 TGCAATTCATGTACATGCATGGA 59.300 39.130 29.41 20.48 44.54 3.41
289 293 4.342665 TGCAATTCATGTACATGCATGGAT 59.657 37.500 29.41 15.56 44.56 3.41
290 294 4.684242 GCAATTCATGTACATGCATGGATG 59.316 41.667 29.41 24.00 42.53 3.51
291 295 5.508320 GCAATTCATGTACATGCATGGATGA 60.508 40.000 31.07 26.05 42.53 2.92
306 310 1.324383 GATGACATGCATGATGCCCA 58.676 50.000 32.75 19.64 44.23 5.36
307 311 1.000607 GATGACATGCATGATGCCCAC 60.001 52.381 32.75 12.61 44.23 4.61
310 314 0.612453 ACATGCATGATGCCCACACA 60.612 50.000 32.75 0.00 44.23 3.72
357 361 9.423061 ACTTTTCATTTTAGTAATCCACAATGC 57.577 29.630 1.06 0.00 0.00 3.56
358 362 9.421806 CTTTTCATTTTAGTAATCCACAATGCA 57.578 29.630 0.00 0.00 0.00 3.96
394 496 5.321983 GCACGAAAGAGCTCATTATGTAG 57.678 43.478 17.77 8.49 44.60 2.74
417 519 1.123928 AGATCAAGGGGGTCTTAGCG 58.876 55.000 0.00 0.00 33.68 4.26
418 520 0.831307 GATCAAGGGGGTCTTAGCGT 59.169 55.000 0.00 0.00 33.68 5.07
425 527 1.614413 GGGGGTCTTAGCGTCATCTAG 59.386 57.143 0.00 0.00 0.00 2.43
426 528 1.000052 GGGGTCTTAGCGTCATCTAGC 60.000 57.143 0.00 0.00 0.00 3.42
428 530 3.147629 GGGTCTTAGCGTCATCTAGCTA 58.852 50.000 0.00 0.00 44.15 3.32
467 631 6.391227 AAACATTAGTGTGGGAAACTCTTG 57.609 37.500 0.00 0.00 38.92 3.02
470 634 1.680338 AGTGTGGGAAACTCTTGCAC 58.320 50.000 0.00 0.00 28.00 4.57
472 636 1.065551 GTGTGGGAAACTCTTGCACAC 59.934 52.381 0.00 0.00 32.43 3.82
481 645 6.992715 GGGAAACTCTTGCACACTATATATGT 59.007 38.462 0.00 0.00 0.00 2.29
520 685 8.157476 ACATATCCTTGTTTCTGTAGACAAACT 58.843 33.333 0.00 0.00 35.54 2.66
521 686 9.653287 CATATCCTTGTTTCTGTAGACAAACTA 57.347 33.333 0.00 0.00 35.54 2.24
522 687 9.877178 ATATCCTTGTTTCTGTAGACAAACTAG 57.123 33.333 0.00 0.00 35.54 2.57
523 688 7.356089 TCCTTGTTTCTGTAGACAAACTAGA 57.644 36.000 0.00 0.00 37.47 2.43
524 689 7.434492 TCCTTGTTTCTGTAGACAAACTAGAG 58.566 38.462 0.00 0.00 41.85 2.43
525 690 6.647067 CCTTGTTTCTGTAGACAAACTAGAGG 59.353 42.308 0.00 5.84 41.15 3.69
527 692 7.540474 TGTTTCTGTAGACAAACTAGAGGAT 57.460 36.000 0.00 0.00 41.15 3.24
528 693 8.645814 TGTTTCTGTAGACAAACTAGAGGATA 57.354 34.615 0.00 0.00 41.15 2.59
529 694 8.521176 TGTTTCTGTAGACAAACTAGAGGATAC 58.479 37.037 0.00 0.00 41.15 2.24
530 695 8.741841 GTTTCTGTAGACAAACTAGAGGATACT 58.258 37.037 0.00 0.00 41.15 2.12
546 711 3.869246 GGATACTCCATACGTTGTTGTGG 59.131 47.826 0.00 0.00 36.28 4.17
547 712 2.178912 ACTCCATACGTTGTTGTGGG 57.821 50.000 0.00 0.00 32.58 4.61
548 713 1.695242 ACTCCATACGTTGTTGTGGGA 59.305 47.619 0.00 0.00 32.58 4.37
549 714 2.105134 ACTCCATACGTTGTTGTGGGAA 59.895 45.455 0.00 0.00 32.58 3.97
550 715 3.244770 ACTCCATACGTTGTTGTGGGAAT 60.245 43.478 0.00 0.00 32.58 3.01
551 716 3.756434 CTCCATACGTTGTTGTGGGAATT 59.244 43.478 0.00 0.00 32.58 2.17
552 717 3.504134 TCCATACGTTGTTGTGGGAATTG 59.496 43.478 0.00 0.00 32.58 2.32
553 718 3.504134 CCATACGTTGTTGTGGGAATTGA 59.496 43.478 0.00 0.00 0.00 2.57
554 719 4.022762 CCATACGTTGTTGTGGGAATTGAA 60.023 41.667 0.00 0.00 0.00 2.69
555 720 5.336372 CCATACGTTGTTGTGGGAATTGAAT 60.336 40.000 0.00 0.00 0.00 2.57
556 721 3.976169 ACGTTGTTGTGGGAATTGAATG 58.024 40.909 0.00 0.00 0.00 2.67
557 722 2.730928 CGTTGTTGTGGGAATTGAATGC 59.269 45.455 0.00 0.00 0.00 3.56
558 723 3.726607 GTTGTTGTGGGAATTGAATGCA 58.273 40.909 0.00 0.00 0.00 3.96
559 724 4.125703 GTTGTTGTGGGAATTGAATGCAA 58.874 39.130 0.00 0.00 38.60 4.08
560 725 4.620589 TGTTGTGGGAATTGAATGCAAT 57.379 36.364 0.00 0.00 46.35 3.56
561 726 5.735285 TGTTGTGGGAATTGAATGCAATA 57.265 34.783 0.00 0.00 43.71 1.90
562 727 6.297080 TGTTGTGGGAATTGAATGCAATAT 57.703 33.333 0.00 0.00 43.71 1.28
563 728 7.415592 TGTTGTGGGAATTGAATGCAATATA 57.584 32.000 0.00 0.00 43.71 0.86
564 729 8.020777 TGTTGTGGGAATTGAATGCAATATAT 57.979 30.769 0.00 0.00 43.71 0.86
565 730 7.927092 TGTTGTGGGAATTGAATGCAATATATG 59.073 33.333 0.00 0.00 43.71 1.78
566 731 7.600231 TGTGGGAATTGAATGCAATATATGT 57.400 32.000 0.00 0.00 43.71 2.29
567 732 7.660112 TGTGGGAATTGAATGCAATATATGTC 58.340 34.615 0.00 0.00 43.71 3.06
568 733 7.287235 TGTGGGAATTGAATGCAATATATGTCA 59.713 33.333 0.00 0.00 43.71 3.58
569 734 8.143193 GTGGGAATTGAATGCAATATATGTCAA 58.857 33.333 0.00 0.00 43.71 3.18
570 735 8.872134 TGGGAATTGAATGCAATATATGTCAAT 58.128 29.630 0.00 0.00 43.71 2.57
571 736 9.146984 GGGAATTGAATGCAATATATGTCAATG 57.853 33.333 0.00 0.00 43.71 2.82
572 737 9.917129 GGAATTGAATGCAATATATGTCAATGA 57.083 29.630 0.00 0.00 43.71 2.57
792 957 7.512992 AGAGATAGGGACCATTTTCATTACTG 58.487 38.462 0.00 0.00 0.00 2.74
824 989 9.832445 TTAGGATAGACCATTTTCACTATTCAC 57.168 33.333 0.00 0.00 42.04 3.18
826 991 8.552296 AGGATAGACCATTTTCACTATTCACTT 58.448 33.333 0.00 0.00 42.04 3.16
827 992 8.831550 GGATAGACCATTTTCACTATTCACTTC 58.168 37.037 0.00 0.00 38.79 3.01
828 993 6.727824 AGACCATTTTCACTATTCACTTCG 57.272 37.500 0.00 0.00 0.00 3.79
829 994 5.643777 AGACCATTTTCACTATTCACTTCGG 59.356 40.000 0.00 0.00 0.00 4.30
830 995 4.156008 ACCATTTTCACTATTCACTTCGGC 59.844 41.667 0.00 0.00 0.00 5.54
831 996 4.155826 CCATTTTCACTATTCACTTCGGCA 59.844 41.667 0.00 0.00 0.00 5.69
833 998 2.010145 TCACTATTCACTTCGGCAGC 57.990 50.000 0.00 0.00 0.00 5.25
836 1001 0.654683 CTATTCACTTCGGCAGCTGC 59.345 55.000 30.88 30.88 41.14 5.25
837 1002 0.036483 TATTCACTTCGGCAGCTGCA 60.036 50.000 37.63 18.09 44.36 4.41
838 1003 1.303799 ATTCACTTCGGCAGCTGCAG 61.304 55.000 37.63 33.82 44.36 4.41
839 1004 4.099170 CACTTCGGCAGCTGCAGC 62.099 66.667 37.63 31.53 44.36 5.25
850 1015 4.767255 CTGCAGCCCAGGGACGTC 62.767 72.222 10.89 7.13 37.93 4.34
858 1023 1.221021 CCAGGGACGTCTAAAGGCC 59.779 63.158 16.46 6.85 0.00 5.19
897 1062 4.202121 CGAAGAGAATTCCCCATAGACGAA 60.202 45.833 0.65 0.00 0.00 3.85
898 1063 4.674281 AGAGAATTCCCCATAGACGAAC 57.326 45.455 0.65 0.00 0.00 3.95
900 1065 3.028850 AGAATTCCCCATAGACGAACGA 58.971 45.455 0.65 0.00 0.00 3.85
902 1067 1.548081 TTCCCCATAGACGAACGACA 58.452 50.000 0.14 0.00 0.00 4.35
987 1195 2.203567 CGCCCCAAACCCTCCAAA 60.204 61.111 0.00 0.00 0.00 3.28
1051 1259 1.384989 GCTCCCCTTCTCGATCGACA 61.385 60.000 15.15 0.00 0.00 4.35
1149 1357 4.815108 TCGCGCCTCAGCCTCCTA 62.815 66.667 0.00 0.00 34.57 2.94
1464 1672 1.614711 GGATGGGAAGGGCATGTCA 59.385 57.895 0.00 0.00 0.00 3.58
1603 1811 2.743928 GGTGAGTGCCGGCTCTTG 60.744 66.667 30.10 0.00 36.51 3.02
1633 1843 0.320334 TGCTTGGTTGATCGCTCGAA 60.320 50.000 0.00 0.00 0.00 3.71
1636 1846 0.796312 TTGGTTGATCGCTCGAAAGC 59.204 50.000 0.00 0.00 45.56 3.51
1648 1858 0.249699 TCGAAAGCGCTCAGTTTCCA 60.250 50.000 12.06 0.00 37.46 3.53
1655 1885 2.004583 CGCTCAGTTTCCACCGATTA 57.995 50.000 0.00 0.00 0.00 1.75
1717 1952 0.701731 TCTGGGTATGGTTGGTTGGG 59.298 55.000 0.00 0.00 0.00 4.12
1723 1958 3.585289 GGGTATGGTTGGTTGGGAAATTT 59.415 43.478 0.00 0.00 0.00 1.82
1736 2053 4.671831 TGGGAAATTTTATCTCAGTGGCA 58.328 39.130 0.00 0.00 0.00 4.92
1746 2063 2.730382 TCTCAGTGGCAATGCATTGAT 58.270 42.857 37.36 19.29 40.14 2.57
1753 2070 1.675483 GGCAATGCATTGATACACGGA 59.325 47.619 37.36 0.00 40.14 4.69
1767 2084 7.534085 TGATACACGGATACTTCATTTCAAC 57.466 36.000 0.00 0.00 0.00 3.18
1784 2146 7.552687 TCATTTCAACCAGATACCTATGTGTTC 59.447 37.037 0.00 0.00 0.00 3.18
1817 2209 7.830697 TGGTCTCATGTCAAGATGATTATGTTT 59.169 33.333 0.00 0.00 31.88 2.83
1822 2214 9.112725 TCATGTCAAGATGATTATGTTTGGTAG 57.887 33.333 0.00 0.00 30.73 3.18
1871 2288 2.292845 GCTTGGAGGCTATTGCTCATTC 59.707 50.000 0.00 0.00 39.59 2.67
1872 2289 3.818180 CTTGGAGGCTATTGCTCATTCT 58.182 45.455 0.00 0.00 39.59 2.40
1873 2290 3.939740 TGGAGGCTATTGCTCATTCTT 57.060 42.857 0.00 0.00 39.59 2.52
1968 2390 5.439721 TGTCTGCCTATGTTTGAAGCATAT 58.560 37.500 2.21 0.00 32.11 1.78
1974 2396 6.039270 TGCCTATGTTTGAAGCATATTGTACC 59.961 38.462 2.21 0.00 0.00 3.34
1989 2411 9.929180 GCATATTGTACCACTAAGATATTCTCA 57.071 33.333 0.00 0.00 0.00 3.27
1996 2418 9.601217 GTACCACTAAGATATTCTCAAATGTGT 57.399 33.333 0.00 0.00 0.00 3.72
1999 2421 8.393366 CCACTAAGATATTCTCAAATGTGTGTG 58.607 37.037 0.00 0.00 0.00 3.82
2011 2433 0.758734 TGTGTGTGCTAGCTGGTTCT 59.241 50.000 17.23 0.00 0.00 3.01
2050 2472 0.464870 TGGAAAGTTTGGACGTCCGA 59.535 50.000 28.70 25.14 37.55 4.55
2053 2475 0.754472 AAAGTTTGGACGTCCGAGGA 59.246 50.000 28.70 11.16 39.43 3.71
2055 2477 1.843368 AGTTTGGACGTCCGAGGATA 58.157 50.000 28.70 9.99 39.43 2.59
2062 2484 2.030981 GGACGTCCGAGGATATTCAGAC 60.031 54.545 20.85 0.00 0.00 3.51
2069 2491 6.868864 CGTCCGAGGATATTCAGACAATTTAT 59.131 38.462 0.00 0.00 0.00 1.40
2087 2509 7.016170 ACAATTTATGGCTTTTAGGTCCAAGTT 59.984 33.333 0.00 0.00 33.04 2.66
2092 2514 4.825085 TGGCTTTTAGGTCCAAGTTTACTG 59.175 41.667 0.00 0.00 0.00 2.74
2132 2554 3.890527 CTGTAGCCTCCCAGCAAAT 57.109 52.632 0.00 0.00 34.23 2.32
2162 2584 1.578583 ACGGTCAAGGTTCTTTCACG 58.421 50.000 0.00 0.00 0.00 4.35
2179 2601 4.465632 TCACGTGTTCTAATATGGCACT 57.534 40.909 16.51 0.00 0.00 4.40
2180 2602 4.180817 TCACGTGTTCTAATATGGCACTG 58.819 43.478 16.51 0.00 0.00 3.66
2182 2604 4.811024 CACGTGTTCTAATATGGCACTGAT 59.189 41.667 7.58 0.00 0.00 2.90
2187 2609 7.306807 CGTGTTCTAATATGGCACTGATTGTAG 60.307 40.741 0.00 0.00 0.00 2.74
2246 2670 5.990386 GTCTACTGTCGATATCTAGTCCACA 59.010 44.000 0.34 0.00 0.00 4.17
2258 2682 4.430007 TCTAGTCCACAATTGATACGCAC 58.570 43.478 13.59 0.00 0.00 5.34
2277 2701 4.540824 GCACATTCCTCTTTGAACTGTTC 58.459 43.478 13.49 13.49 0.00 3.18
2323 2747 8.309656 CAAGATCATATCTGCTAACCTGTGATA 58.690 37.037 0.00 0.00 40.13 2.15
2364 2788 2.553602 TGATCATTGTCTTTGCGCTGTT 59.446 40.909 9.73 0.00 0.00 3.16
2533 2958 5.425217 TGTCTGTGTGGTATGGTCAATATCT 59.575 40.000 0.00 0.00 0.00 1.98
2551 2976 7.712639 TCAATATCTCTCTTTACATGAACTGGC 59.287 37.037 0.00 0.00 0.00 4.85
2585 3010 3.788434 ATGTTCACTTCAGTTTACGCG 57.212 42.857 3.53 3.53 0.00 6.01
2587 3012 2.283086 TGTTCACTTCAGTTTACGCGTG 59.717 45.455 24.59 4.33 0.00 5.34
2700 3125 3.884091 AGGATATCCTCGTCGTATATGCC 59.116 47.826 19.18 0.00 44.77 4.40
2734 3159 2.628178 CCGGATATGAGTACCTGCAAGA 59.372 50.000 0.00 0.00 34.07 3.02
2736 3161 4.262635 CCGGATATGAGTACCTGCAAGAAT 60.263 45.833 0.00 0.00 34.07 2.40
2737 3162 4.926238 CGGATATGAGTACCTGCAAGAATC 59.074 45.833 0.00 0.00 34.07 2.52
2739 3164 3.895232 ATGAGTACCTGCAAGAATCGT 57.105 42.857 0.00 0.00 34.07 3.73
2741 3166 3.325870 TGAGTACCTGCAAGAATCGTTG 58.674 45.455 0.00 0.00 34.07 4.10
2742 3167 3.244078 TGAGTACCTGCAAGAATCGTTGT 60.244 43.478 0.00 0.00 34.07 3.32
2783 3209 2.722487 CTAGGTCGGCGGTGCTAG 59.278 66.667 7.21 0.00 0.00 3.42
2790 3216 2.280865 GGCGGTGCTAGGTATGGC 60.281 66.667 0.00 0.00 0.00 4.40
2804 3230 2.772515 GGTATGGCCCTCTTAGTCTTGT 59.227 50.000 0.00 0.00 0.00 3.16
2815 3241 3.006537 TCTTAGTCTTGTGTACACCTGCC 59.993 47.826 22.91 8.85 0.00 4.85
2841 3267 6.043938 CCCTTATGGCCCGTTATATGGTATAT 59.956 42.308 0.00 0.00 0.00 0.86
2842 3268 7.236019 CCCTTATGGCCCGTTATATGGTATATA 59.764 40.741 0.00 0.00 0.00 0.86
2843 3269 8.822805 CCTTATGGCCCGTTATATGGTATATAT 58.177 37.037 0.00 0.00 0.00 0.86
2879 3307 1.942657 GTAGTGCGACTACCCATCGTA 59.057 52.381 12.68 0.00 43.96 3.43
2924 3352 7.967854 TGAAAGTCAAACAACTTAGTGTCAATG 59.032 33.333 0.00 0.00 38.52 2.82
2931 3359 5.364778 ACAACTTAGTGTCAATGTACAGCA 58.635 37.500 0.33 0.00 0.00 4.41
2932 3360 5.820423 ACAACTTAGTGTCAATGTACAGCAA 59.180 36.000 0.33 0.00 0.00 3.91
2933 3361 6.486657 ACAACTTAGTGTCAATGTACAGCAAT 59.513 34.615 0.33 0.11 0.00 3.56
2934 3362 7.659799 ACAACTTAGTGTCAATGTACAGCAATA 59.340 33.333 0.33 0.00 0.00 1.90
2935 3363 8.668353 CAACTTAGTGTCAATGTACAGCAATAT 58.332 33.333 0.33 0.00 0.00 1.28
2936 3364 8.201554 ACTTAGTGTCAATGTACAGCAATATG 57.798 34.615 0.33 6.54 0.00 1.78
2937 3365 8.040727 ACTTAGTGTCAATGTACAGCAATATGA 58.959 33.333 0.33 0.00 0.00 2.15
2938 3366 6.668541 AGTGTCAATGTACAGCAATATGAC 57.331 37.500 0.33 9.17 38.55 3.06
2939 3367 5.586243 AGTGTCAATGTACAGCAATATGACC 59.414 40.000 0.33 4.21 37.91 4.02
2940 3368 5.353956 GTGTCAATGTACAGCAATATGACCA 59.646 40.000 0.33 0.00 37.91 4.02
2941 3369 5.942826 TGTCAATGTACAGCAATATGACCAA 59.057 36.000 0.33 0.00 37.91 3.67
2942 3370 6.432472 TGTCAATGTACAGCAATATGACCAAA 59.568 34.615 0.33 0.00 37.91 3.28
2943 3371 7.122501 TGTCAATGTACAGCAATATGACCAAAT 59.877 33.333 0.33 0.00 37.91 2.32
2944 3372 8.620416 GTCAATGTACAGCAATATGACCAAATA 58.380 33.333 0.33 0.00 35.27 1.40
2945 3373 9.353431 TCAATGTACAGCAATATGACCAAATAT 57.647 29.630 0.33 0.00 0.00 1.28
2946 3374 9.970395 CAATGTACAGCAATATGACCAAATATT 57.030 29.630 0.33 0.00 33.85 1.28
2952 3380 9.590451 ACAGCAATATGACCAAATATTTTTGAG 57.410 29.630 9.87 3.62 44.11 3.02
2953 3381 9.037737 CAGCAATATGACCAAATATTTTTGAGG 57.962 33.333 9.87 5.92 44.11 3.86
2954 3382 8.206189 AGCAATATGACCAAATATTTTTGAGGG 58.794 33.333 9.87 5.61 44.11 4.30
2955 3383 8.203485 GCAATATGACCAAATATTTTTGAGGGA 58.797 33.333 9.87 0.00 44.11 4.20
2959 3387 6.405538 TGACCAAATATTTTTGAGGGAATGC 58.594 36.000 9.87 0.00 44.11 3.56
2960 3388 5.744171 ACCAAATATTTTTGAGGGAATGCC 58.256 37.500 9.87 0.00 44.11 4.40
2961 3389 5.250313 ACCAAATATTTTTGAGGGAATGCCA 59.750 36.000 9.87 0.00 44.11 4.92
2962 3390 6.069498 ACCAAATATTTTTGAGGGAATGCCAT 60.069 34.615 9.87 0.00 44.11 4.40
2963 3391 6.484308 CCAAATATTTTTGAGGGAATGCCATC 59.516 38.462 9.87 0.00 44.11 3.51
3057 3485 5.812286 ACATTTACGTCTATCCCCAAAACT 58.188 37.500 0.00 0.00 0.00 2.66
3212 3640 3.378112 GGCAGCAGTTGTTATGAATAGCA 59.622 43.478 0.00 0.00 0.00 3.49
3338 3766 0.762082 TGGGTTGGATGCTTTTGCCA 60.762 50.000 0.00 0.00 46.87 4.92
3356 3784 4.522114 TGCCAATTTCATCGTAATCCTCA 58.478 39.130 0.00 0.00 0.00 3.86
3370 3798 4.434545 AATCCTCAGAAGCTATGCACAT 57.565 40.909 0.00 0.00 0.00 3.21
3398 3826 6.299023 TCCATGTTAAGCTTATATTGTGCG 57.701 37.500 7.08 0.00 0.00 5.34
3403 3831 7.837202 TGTTAAGCTTATATTGTGCGTAACT 57.163 32.000 20.93 0.00 45.09 2.24
3452 3884 5.755849 AGGGCTTAATAGTATTGTGCAACT 58.244 37.500 17.65 13.61 38.04 3.16
3552 3986 5.175859 TCCTACATTTACCAAAGAAGAGCG 58.824 41.667 0.00 0.00 0.00 5.03
3600 4034 4.797471 TGTGATAAACAACAATGAGCTGC 58.203 39.130 0.00 0.00 35.24 5.25
3601 4035 4.277921 TGTGATAAACAACAATGAGCTGCA 59.722 37.500 1.02 0.00 35.24 4.41
3620 4054 5.031066 TGCAAGTGTTACTTACCTCAACT 57.969 39.130 0.00 0.00 36.03 3.16
3623 4057 6.704493 TGCAAGTGTTACTTACCTCAACTAAG 59.296 38.462 0.00 0.00 36.03 2.18
3648 4082 8.587608 AGGATGCTCTAATTTTTCATTGTGAAA 58.412 29.630 1.24 1.24 43.84 2.69
3767 4201 3.063452 GCATCTGTGGTTTGTATACGTGG 59.937 47.826 0.00 0.00 0.00 4.94
3820 4254 1.411041 GCCTAGGAAGTGGTACGGAT 58.589 55.000 14.75 0.00 0.00 4.18
3860 4294 0.109412 GCAAGGTGATTGAGCTGCAC 60.109 55.000 1.02 0.00 41.83 4.57
4079 7802 0.788391 GTGTAGGCCTTGACGAAACG 59.212 55.000 12.58 0.00 0.00 3.60
4230 7953 2.672714 CAATCGTCGAACAAGGTGAGA 58.327 47.619 0.00 0.00 0.00 3.27
4246 7969 3.496160 GGTGAGACTTTACCCAGAAAGCA 60.496 47.826 0.00 0.00 39.60 3.91
4461 8197 8.134895 TGTACTTGCTTTAATTTTCTCCTTGTG 58.865 33.333 0.00 0.00 0.00 3.33
4462 8198 5.985530 ACTTGCTTTAATTTTCTCCTTGTGC 59.014 36.000 0.00 0.00 0.00 4.57
4463 8199 5.789643 TGCTTTAATTTTCTCCTTGTGCT 57.210 34.783 0.00 0.00 0.00 4.40
4464 8200 6.160576 TGCTTTAATTTTCTCCTTGTGCTT 57.839 33.333 0.00 0.00 0.00 3.91
4465 8201 6.215845 TGCTTTAATTTTCTCCTTGTGCTTC 58.784 36.000 0.00 0.00 0.00 3.86
4466 8202 6.040842 TGCTTTAATTTTCTCCTTGTGCTTCT 59.959 34.615 0.00 0.00 0.00 2.85
4550 8287 3.093717 GCAATGGCAGAGGAATGAATG 57.906 47.619 0.00 0.00 40.72 2.67
4622 8359 2.632544 CCCGTGGCGTGACTACTCA 61.633 63.158 0.00 0.00 0.00 3.41
4623 8360 1.443872 CCGTGGCGTGACTACTCAC 60.444 63.158 0.00 0.00 43.17 3.51
4700 8539 3.724508 ATCATTTGCGGTTTTGTGTGA 57.275 38.095 0.00 0.00 0.00 3.58
4705 8544 3.510388 TTGCGGTTTTGTGTGAAATCA 57.490 38.095 0.00 0.00 0.00 2.57
4727 8566 4.874970 ACGGATCGTGTAAAACTTACTGT 58.125 39.130 0.00 0.00 39.18 3.55
4743 8582 8.596781 AACTTACTGTAACTCTGGATCATACT 57.403 34.615 0.00 0.00 0.00 2.12
4788 8627 3.983044 AGGTGAAATCGGAAGCTTACT 57.017 42.857 7.19 0.00 0.00 2.24
4793 8632 6.148976 AGGTGAAATCGGAAGCTTACTTTTAC 59.851 38.462 7.19 8.23 35.82 2.01
4802 8641 6.183360 CGGAAGCTTACTTTTACTGTTCTAGC 60.183 42.308 7.19 0.00 35.82 3.42
4806 8645 7.093992 AGCTTACTTTTACTGTTCTAGCTCAG 58.906 38.462 10.85 10.85 31.28 3.35
4830 8669 4.310769 ACTTCTGCATACCGAATCTATGC 58.689 43.478 7.34 7.34 44.63 3.14
4831 8670 4.039730 ACTTCTGCATACCGAATCTATGCT 59.960 41.667 13.33 0.00 44.65 3.79
4835 8674 2.663602 GCATACCGAATCTATGCTGTCG 59.336 50.000 7.10 0.00 42.20 4.35
4839 8678 2.950309 ACCGAATCTATGCTGTCGTAGT 59.050 45.455 0.00 0.00 34.26 2.73
4840 8679 3.243101 ACCGAATCTATGCTGTCGTAGTG 60.243 47.826 0.00 0.00 34.26 2.74
4841 8680 3.300857 CGAATCTATGCTGTCGTAGTGG 58.699 50.000 0.00 0.00 34.26 4.00
4842 8681 3.003378 CGAATCTATGCTGTCGTAGTGGA 59.997 47.826 0.00 0.00 34.26 4.02
4843 8682 4.541779 GAATCTATGCTGTCGTAGTGGAG 58.458 47.826 0.00 0.00 34.26 3.86
4845 8684 3.617284 TCTATGCTGTCGTAGTGGAGAA 58.383 45.455 0.00 0.00 34.26 2.87
4846 8685 2.949451 ATGCTGTCGTAGTGGAGAAG 57.051 50.000 0.00 0.00 0.00 2.85
4848 8687 1.269723 TGCTGTCGTAGTGGAGAAGTG 59.730 52.381 0.00 0.00 0.00 3.16
4852 8691 2.034179 TGTCGTAGTGGAGAAGTGTGTG 59.966 50.000 0.00 0.00 0.00 3.82
4853 8692 2.292569 GTCGTAGTGGAGAAGTGTGTGA 59.707 50.000 0.00 0.00 0.00 3.58
4907 8776 8.241367 ACACGAATTTGGACCAAACTATTATTC 58.759 33.333 21.85 17.54 36.13 1.75
4962 8831 2.249309 CAGCACTTGGACAACGCG 59.751 61.111 3.53 3.53 0.00 6.01
4980 8852 1.227853 GTGAGAACCGCCAACAGGT 60.228 57.895 0.00 0.00 45.29 4.00
5138 12037 2.233676 CCCTGGTTCTGGTTTTATTGCC 59.766 50.000 0.00 0.00 0.00 4.52
5168 12067 3.181506 CCGCCTAATCTCAGCTTCAAAAC 60.182 47.826 0.00 0.00 0.00 2.43
5205 12105 2.477525 CCAACGAGTCGAAGCTACTACC 60.478 54.545 21.50 0.00 0.00 3.18
5208 12108 3.194062 ACGAGTCGAAGCTACTACCTAC 58.806 50.000 21.50 0.00 0.00 3.18
5216 12118 5.587844 TCGAAGCTACTACCTACTCGAAAAT 59.412 40.000 0.00 0.00 0.00 1.82
5217 12119 6.094603 TCGAAGCTACTACCTACTCGAAAATT 59.905 38.462 0.00 0.00 0.00 1.82
5219 12121 7.912250 CGAAGCTACTACCTACTCGAAAATTAA 59.088 37.037 0.00 0.00 0.00 1.40
5220 12122 9.578439 GAAGCTACTACCTACTCGAAAATTAAA 57.422 33.333 0.00 0.00 0.00 1.52
5303 12208 0.968901 ACGAGTAGATGACGGCCCAA 60.969 55.000 0.00 0.00 0.00 4.12
5330 12235 1.205417 CCTGGCCCAATTTGTCATGAC 59.795 52.381 19.27 19.27 0.00 3.06
5334 12239 4.155709 TGGCCCAATTTGTCATGACTTTA 58.844 39.130 25.55 11.73 0.00 1.85
5339 12244 8.637986 GGCCCAATTTGTCATGACTTTATAATA 58.362 33.333 25.55 0.62 0.00 0.98
5376 12281 0.378610 GCGCTTCAGGCTCCAAATAC 59.621 55.000 0.00 0.00 39.13 1.89
5379 12284 2.019984 GCTTCAGGCTCCAAATACAGG 58.980 52.381 0.00 0.00 38.06 4.00
5400 12305 1.627864 AAAATGGTACCTGGTGCACC 58.372 50.000 29.67 29.67 0.00 5.01
5403 12308 1.140134 ATGGTACCTGGTGCACCCTT 61.140 55.000 32.62 18.63 34.29 3.95
5424 12329 5.279156 CCTTGCTGCACTTCCTTCTTAAAAT 60.279 40.000 0.00 0.00 0.00 1.82
5425 12330 5.789643 TGCTGCACTTCCTTCTTAAAATT 57.210 34.783 0.00 0.00 0.00 1.82
5426 12331 6.892658 TGCTGCACTTCCTTCTTAAAATTA 57.107 33.333 0.00 0.00 0.00 1.40
5430 12335 7.214467 TGCACTTCCTTCTTAAAATTACAGG 57.786 36.000 0.00 0.00 0.00 4.00
5478 12396 1.754226 TCAGTTGGTTTTTGCCTGGTC 59.246 47.619 0.00 0.00 0.00 4.02
5490 12408 4.335400 TTGCCTGGTCTTTTCCATTTTC 57.665 40.909 0.00 0.00 36.84 2.29
5496 12414 5.010213 CCTGGTCTTTTCCATTTTCCGTTTA 59.990 40.000 0.00 0.00 36.84 2.01
5497 12415 6.295067 CCTGGTCTTTTCCATTTTCCGTTTAT 60.295 38.462 0.00 0.00 36.84 1.40
5504 12422 8.966069 TTTTCCATTTTCCGTTTATTTTTCCT 57.034 26.923 0.00 0.00 0.00 3.36
5509 12427 9.658475 CCATTTTCCGTTTATTTTTCCTTTTTC 57.342 29.630 0.00 0.00 0.00 2.29
5510 12428 9.364110 CATTTTCCGTTTATTTTTCCTTTTTCG 57.636 29.630 0.00 0.00 0.00 3.46
5515 12435 8.381387 TCCGTTTATTTTTCCTTTTTCGTTTTG 58.619 29.630 0.00 0.00 0.00 2.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.181350 GCTAGCACACCCCTGCTATT 59.819 55.000 10.63 0.00 46.35 1.73
1 2 0.692419 AGCTAGCACACCCCTGCTAT 60.692 55.000 18.83 0.00 46.35 2.97
2 3 0.032515 TAGCTAGCACACCCCTGCTA 60.033 55.000 18.83 1.19 46.03 3.49
4 5 1.144936 CTAGCTAGCACACCCCTGC 59.855 63.158 18.83 0.00 37.44 4.85
5 6 1.690219 CCCTAGCTAGCACACCCCTG 61.690 65.000 18.83 0.00 0.00 4.45
6 7 1.383248 CCCTAGCTAGCACACCCCT 60.383 63.158 18.83 0.00 0.00 4.79
7 8 1.272554 AACCCTAGCTAGCACACCCC 61.273 60.000 18.83 0.00 0.00 4.95
8 9 0.618981 AAACCCTAGCTAGCACACCC 59.381 55.000 18.83 0.00 0.00 4.61
9 10 2.235402 TGTAAACCCTAGCTAGCACACC 59.765 50.000 18.83 1.90 0.00 4.16
10 11 3.604875 TGTAAACCCTAGCTAGCACAC 57.395 47.619 18.83 8.40 0.00 3.82
11 12 3.618997 GCTTGTAAACCCTAGCTAGCACA 60.619 47.826 18.83 6.83 31.86 4.57
12 13 2.937149 GCTTGTAAACCCTAGCTAGCAC 59.063 50.000 18.83 3.95 31.86 4.40
13 14 2.569853 TGCTTGTAAACCCTAGCTAGCA 59.430 45.455 18.83 5.79 37.37 3.49
14 15 3.261981 TGCTTGTAAACCCTAGCTAGC 57.738 47.619 15.74 6.62 34.77 3.42
15 16 4.095036 GCTTTGCTTGTAAACCCTAGCTAG 59.905 45.833 14.20 14.20 34.77 3.42
16 17 4.007659 GCTTTGCTTGTAAACCCTAGCTA 58.992 43.478 0.00 0.00 34.77 3.32
17 18 2.820197 GCTTTGCTTGTAAACCCTAGCT 59.180 45.455 0.00 0.00 34.77 3.32
18 19 2.556622 TGCTTTGCTTGTAAACCCTAGC 59.443 45.455 0.00 0.00 0.00 3.42
19 20 3.568007 TGTGCTTTGCTTGTAAACCCTAG 59.432 43.478 0.00 0.00 0.00 3.02
20 21 3.556999 TGTGCTTTGCTTGTAAACCCTA 58.443 40.909 0.00 0.00 0.00 3.53
21 22 2.383855 TGTGCTTTGCTTGTAAACCCT 58.616 42.857 0.00 0.00 0.00 4.34
22 23 2.880963 TGTGCTTTGCTTGTAAACCC 57.119 45.000 0.00 0.00 0.00 4.11
23 24 3.494251 CCAATGTGCTTTGCTTGTAAACC 59.506 43.478 0.00 0.00 0.00 3.27
24 25 3.494251 CCCAATGTGCTTTGCTTGTAAAC 59.506 43.478 0.00 0.00 0.00 2.01
25 26 3.494048 CCCCAATGTGCTTTGCTTGTAAA 60.494 43.478 0.00 0.00 0.00 2.01
26 27 2.036992 CCCCAATGTGCTTTGCTTGTAA 59.963 45.455 0.00 0.00 0.00 2.41
27 28 1.617850 CCCCAATGTGCTTTGCTTGTA 59.382 47.619 0.00 0.00 0.00 2.41
28 29 0.393820 CCCCAATGTGCTTTGCTTGT 59.606 50.000 0.00 0.00 0.00 3.16
29 30 0.320946 CCCCCAATGTGCTTTGCTTG 60.321 55.000 0.00 0.00 0.00 4.01
30 31 0.471591 TCCCCCAATGTGCTTTGCTT 60.472 50.000 0.00 0.00 0.00 3.91
31 32 0.471591 TTCCCCCAATGTGCTTTGCT 60.472 50.000 0.00 0.00 0.00 3.91
32 33 0.396060 TTTCCCCCAATGTGCTTTGC 59.604 50.000 0.00 0.00 0.00 3.68
33 34 1.608801 GCTTTCCCCCAATGTGCTTTG 60.609 52.381 0.00 0.00 0.00 2.77
34 35 0.686789 GCTTTCCCCCAATGTGCTTT 59.313 50.000 0.00 0.00 0.00 3.51
35 36 0.471591 TGCTTTCCCCCAATGTGCTT 60.472 50.000 0.00 0.00 0.00 3.91
36 37 0.252375 ATGCTTTCCCCCAATGTGCT 60.252 50.000 0.00 0.00 0.00 4.40
37 38 0.176449 GATGCTTTCCCCCAATGTGC 59.824 55.000 0.00 0.00 0.00 4.57
48 49 4.437121 GCTGTTCATGTGAGAGATGCTTTC 60.437 45.833 0.00 0.00 0.00 2.62
70 71 0.685458 ATGGAGCTTGATTGTGGGGC 60.685 55.000 0.00 0.00 0.00 5.80
78 79 7.512130 TGAGATGTTATTACATGGAGCTTGAT 58.488 34.615 1.31 0.00 44.90 2.57
105 106 7.855784 TGTGAGCTGGGATATTAGAGAATAA 57.144 36.000 0.00 0.00 31.28 1.40
109 110 5.150715 ACATGTGAGCTGGGATATTAGAGA 58.849 41.667 0.00 0.00 0.00 3.10
166 167 4.832823 TGAGGATATGCGGTCATCTAGAAA 59.167 41.667 0.00 0.00 34.22 2.52
171 172 8.891985 ATATATATGAGGATATGCGGTCATCT 57.108 34.615 2.77 0.00 34.22 2.90
172 173 8.194104 GGATATATATGAGGATATGCGGTCATC 58.806 40.741 0.00 0.00 34.22 2.92
230 234 6.889198 TGACTGAAGGGTCTATAAATTGAGG 58.111 40.000 0.00 0.00 37.16 3.86
251 255 4.096833 TGAATTGCATACTGGAAGCATGAC 59.903 41.667 0.00 0.00 40.22 3.06
258 262 6.459985 GCATGTACATGAATTGCATACTGGAA 60.460 38.462 34.65 0.00 41.20 3.53
303 307 6.023357 TCATGTAATTTTCATGTGTGTGGG 57.977 37.500 13.58 0.00 42.03 4.61
306 310 9.624697 GTACATTCATGTAATTTTCATGTGTGT 57.375 29.630 20.46 20.46 44.11 3.72
307 311 9.844790 AGTACATTCATGTAATTTTCATGTGTG 57.155 29.630 16.02 15.44 44.11 3.82
350 354 2.610833 AGCTCATCGTGTATGCATTGTG 59.389 45.455 3.54 0.00 35.38 3.33
353 357 1.600957 GCAGCTCATCGTGTATGCATT 59.399 47.619 3.54 0.00 35.38 3.56
354 358 1.224075 GCAGCTCATCGTGTATGCAT 58.776 50.000 3.79 3.79 35.38 3.96
355 359 0.108233 TGCAGCTCATCGTGTATGCA 60.108 50.000 0.00 0.00 41.05 3.96
356 360 0.302890 GTGCAGCTCATCGTGTATGC 59.697 55.000 0.00 0.00 35.38 3.14
357 361 0.573987 CGTGCAGCTCATCGTGTATG 59.426 55.000 0.00 0.00 36.88 2.39
358 362 0.455815 TCGTGCAGCTCATCGTGTAT 59.544 50.000 0.00 0.00 0.00 2.29
394 496 3.181459 GCTAAGACCCCCTTGATCTTCTC 60.181 52.174 0.00 0.00 36.34 2.87
437 539 9.528489 AGTTTCCCACACTAATGTTTTGTATAT 57.472 29.630 0.00 0.00 36.72 0.86
438 540 8.927675 AGTTTCCCACACTAATGTTTTGTATA 57.072 30.769 0.00 0.00 36.72 1.47
439 541 7.724061 AGAGTTTCCCACACTAATGTTTTGTAT 59.276 33.333 0.00 0.00 36.72 2.29
443 545 6.682861 GCAAGAGTTTCCCACACTAATGTTTT 60.683 38.462 0.00 0.00 36.72 2.43
447 611 3.820467 TGCAAGAGTTTCCCACACTAATG 59.180 43.478 0.00 0.00 0.00 1.90
454 618 1.680338 AGTGTGCAAGAGTTTCCCAC 58.320 50.000 0.00 0.00 0.00 4.61
457 621 7.096023 CGACATATATAGTGTGCAAGAGTTTCC 60.096 40.741 0.00 0.00 0.00 3.13
498 663 7.963532 TCTAGTTTGTCTACAGAAACAAGGAT 58.036 34.615 0.00 0.00 36.78 3.24
525 690 3.869246 CCCACAACAACGTATGGAGTATC 59.131 47.826 0.00 0.00 33.80 2.24
527 692 2.898612 TCCCACAACAACGTATGGAGTA 59.101 45.455 0.00 0.00 33.80 2.59
528 693 1.695242 TCCCACAACAACGTATGGAGT 59.305 47.619 0.00 0.00 33.80 3.85
529 694 2.465860 TCCCACAACAACGTATGGAG 57.534 50.000 0.00 0.00 33.80 3.86
530 695 2.932855 TTCCCACAACAACGTATGGA 57.067 45.000 0.00 0.00 33.80 3.41
531 696 3.504134 TCAATTCCCACAACAACGTATGG 59.496 43.478 0.00 0.00 0.00 2.74
532 697 4.757799 TCAATTCCCACAACAACGTATG 57.242 40.909 0.00 0.00 0.00 2.39
534 699 4.557695 GCATTCAATTCCCACAACAACGTA 60.558 41.667 0.00 0.00 0.00 3.57
535 700 3.798548 GCATTCAATTCCCACAACAACGT 60.799 43.478 0.00 0.00 0.00 3.99
536 701 2.730928 GCATTCAATTCCCACAACAACG 59.269 45.455 0.00 0.00 0.00 4.10
537 702 3.726607 TGCATTCAATTCCCACAACAAC 58.273 40.909 0.00 0.00 0.00 3.32
538 703 4.412796 TTGCATTCAATTCCCACAACAA 57.587 36.364 0.00 0.00 0.00 2.83
539 704 4.620589 ATTGCATTCAATTCCCACAACA 57.379 36.364 0.00 0.00 39.78 3.33
540 705 7.927629 ACATATATTGCATTCAATTCCCACAAC 59.072 33.333 0.00 0.00 42.51 3.32
541 706 8.020777 ACATATATTGCATTCAATTCCCACAA 57.979 30.769 0.00 0.00 42.51 3.33
542 707 7.287235 TGACATATATTGCATTCAATTCCCACA 59.713 33.333 0.00 0.00 42.51 4.17
543 708 7.660112 TGACATATATTGCATTCAATTCCCAC 58.340 34.615 0.00 0.00 42.51 4.61
544 709 7.836479 TGACATATATTGCATTCAATTCCCA 57.164 32.000 0.00 0.00 42.51 4.37
545 710 9.146984 CATTGACATATATTGCATTCAATTCCC 57.853 33.333 0.00 0.00 42.51 3.97
546 711 9.917129 TCATTGACATATATTGCATTCAATTCC 57.083 29.630 0.00 0.00 42.51 3.01
735 900 7.766278 GCATCTCCGTCTTTGTATATCCATATT 59.234 37.037 0.00 0.00 0.00 1.28
736 901 7.093333 TGCATCTCCGTCTTTGTATATCCATAT 60.093 37.037 0.00 0.00 0.00 1.78
737 902 6.210584 TGCATCTCCGTCTTTGTATATCCATA 59.789 38.462 0.00 0.00 0.00 2.74
738 903 5.012046 TGCATCTCCGTCTTTGTATATCCAT 59.988 40.000 0.00 0.00 0.00 3.41
739 904 4.343814 TGCATCTCCGTCTTTGTATATCCA 59.656 41.667 0.00 0.00 0.00 3.41
740 905 4.883083 TGCATCTCCGTCTTTGTATATCC 58.117 43.478 0.00 0.00 0.00 2.59
741 906 6.844696 TTTGCATCTCCGTCTTTGTATATC 57.155 37.500 0.00 0.00 0.00 1.63
742 907 7.047891 TCTTTTGCATCTCCGTCTTTGTATAT 58.952 34.615 0.00 0.00 0.00 0.86
743 908 6.403049 TCTTTTGCATCTCCGTCTTTGTATA 58.597 36.000 0.00 0.00 0.00 1.47
744 909 5.245531 TCTTTTGCATCTCCGTCTTTGTAT 58.754 37.500 0.00 0.00 0.00 2.29
745 910 4.637276 TCTTTTGCATCTCCGTCTTTGTA 58.363 39.130 0.00 0.00 0.00 2.41
746 911 3.476552 TCTTTTGCATCTCCGTCTTTGT 58.523 40.909 0.00 0.00 0.00 2.83
747 912 3.748048 TCTCTTTTGCATCTCCGTCTTTG 59.252 43.478 0.00 0.00 0.00 2.77
748 913 3.999663 CTCTCTTTTGCATCTCCGTCTTT 59.000 43.478 0.00 0.00 0.00 2.52
749 914 3.259374 TCTCTCTTTTGCATCTCCGTCTT 59.741 43.478 0.00 0.00 0.00 3.01
750 915 2.828520 TCTCTCTTTTGCATCTCCGTCT 59.171 45.455 0.00 0.00 0.00 4.18
751 916 3.238108 TCTCTCTTTTGCATCTCCGTC 57.762 47.619 0.00 0.00 0.00 4.79
752 917 3.902881 ATCTCTCTTTTGCATCTCCGT 57.097 42.857 0.00 0.00 0.00 4.69
753 918 4.305769 CCTATCTCTCTTTTGCATCTCCG 58.694 47.826 0.00 0.00 0.00 4.63
754 919 4.346418 TCCCTATCTCTCTTTTGCATCTCC 59.654 45.833 0.00 0.00 0.00 3.71
817 982 0.654683 GCAGCTGCCGAAGTGAATAG 59.345 55.000 28.76 0.00 34.31 1.73
818 983 0.036483 TGCAGCTGCCGAAGTGAATA 60.036 50.000 34.64 10.20 41.18 1.75
822 987 4.099170 GCTGCAGCTGCCGAAGTG 62.099 66.667 34.64 17.93 41.18 3.16
833 998 4.767255 GACGTCCCTGGGCTGCAG 62.767 72.222 10.11 10.11 0.00 4.41
836 1001 0.108138 CTTTAGACGTCCCTGGGCTG 60.108 60.000 13.01 5.08 0.00 4.85
837 1002 1.265454 CCTTTAGACGTCCCTGGGCT 61.265 60.000 13.01 1.39 0.00 5.19
838 1003 1.221021 CCTTTAGACGTCCCTGGGC 59.779 63.158 13.01 2.17 0.00 5.36
839 1004 1.221021 GCCTTTAGACGTCCCTGGG 59.779 63.158 13.01 6.33 0.00 4.45
847 1012 1.374252 ACTGCACGGCCTTTAGACG 60.374 57.895 0.00 0.00 0.00 4.18
850 1015 1.915614 CTGCACTGCACGGCCTTTAG 61.916 60.000 0.00 0.00 33.79 1.85
878 1043 3.067742 TCGTTCGTCTATGGGGAATTCTC 59.932 47.826 5.23 0.00 0.00 2.87
1606 1814 2.413765 CGATCAACCAAGCAGCAGAAAG 60.414 50.000 0.00 0.00 0.00 2.62
1633 1843 1.961277 CGGTGGAAACTGAGCGCTT 60.961 57.895 13.26 0.00 0.00 4.68
1636 1846 2.004583 TAATCGGTGGAAACTGAGCG 57.995 50.000 0.00 0.00 34.44 5.03
1641 1851 5.805728 ACTTCAGAATAATCGGTGGAAACT 58.194 37.500 0.00 0.00 0.00 2.66
1697 1927 1.615919 CCCAACCAACCATACCCAGAC 60.616 57.143 0.00 0.00 0.00 3.51
1717 1952 6.101332 TGCATTGCCACTGAGATAAAATTTC 58.899 36.000 6.12 0.00 0.00 2.17
1723 1958 4.271661 TCAATGCATTGCCACTGAGATAA 58.728 39.130 30.57 9.43 37.68 1.75
1736 2053 6.054941 TGAAGTATCCGTGTATCAATGCATT 58.945 36.000 5.99 5.99 0.00 3.56
1746 2063 5.795972 TGGTTGAAATGAAGTATCCGTGTA 58.204 37.500 0.00 0.00 0.00 2.90
1753 2070 9.784531 CATAGGTATCTGGTTGAAATGAAGTAT 57.215 33.333 0.00 0.00 0.00 2.12
1767 2084 4.386867 ACACGAACACATAGGTATCTGG 57.613 45.455 0.00 0.00 0.00 3.86
1784 2146 4.494484 TCTTGACATGAGACCATAACACG 58.506 43.478 0.00 0.00 0.00 4.49
1890 2312 4.822350 AGCTTATGTGTAGCTACTGATCGA 59.178 41.667 23.84 0.10 46.66 3.59
1891 2313 5.114785 AGCTTATGTGTAGCTACTGATCG 57.885 43.478 23.84 9.68 46.66 3.69
1974 2396 7.907045 GCACACACATTTGAGAATATCTTAGTG 59.093 37.037 0.00 0.00 0.00 2.74
1989 2411 2.276732 ACCAGCTAGCACACACATTT 57.723 45.000 18.83 0.00 0.00 2.32
1996 2418 0.764890 AACCAGAACCAGCTAGCACA 59.235 50.000 18.83 0.00 0.00 4.57
1999 2421 3.828875 ATAGAACCAGAACCAGCTAGC 57.171 47.619 6.62 6.62 0.00 3.42
2011 2433 9.177608 CTTTCCACATCTCATTTAATAGAACCA 57.822 33.333 0.00 0.00 0.00 3.67
2050 2472 8.773033 AAAGCCATAAATTGTCTGAATATCCT 57.227 30.769 0.00 0.00 0.00 3.24
2055 2477 8.366359 ACCTAAAAGCCATAAATTGTCTGAAT 57.634 30.769 0.00 0.00 0.00 2.57
2062 2484 6.935167 ACTTGGACCTAAAAGCCATAAATTG 58.065 36.000 0.00 0.00 0.00 2.32
2069 2491 4.825085 CAGTAAACTTGGACCTAAAAGCCA 59.175 41.667 0.00 0.00 0.00 4.75
2087 2509 1.068417 ACACGACTTGCGCCAGTAA 59.932 52.632 14.90 0.00 46.04 2.24
2108 2530 0.177604 CTGGGAGGCTACAGCTGAAG 59.822 60.000 23.35 0.00 41.70 3.02
2132 2554 7.886629 AGAACCTTGACCGTACAACTATATA 57.113 36.000 0.00 0.00 0.00 0.86
2162 2584 6.683974 ACAATCAGTGCCATATTAGAACAC 57.316 37.500 0.00 0.00 0.00 3.32
2182 2604 8.962679 ACCAGTTGAAATTTGTAAGAACTACAA 58.037 29.630 0.00 0.00 46.57 2.41
2187 2609 5.462068 GCCACCAGTTGAAATTTGTAAGAAC 59.538 40.000 0.00 0.00 0.00 3.01
2246 2670 5.647658 TCAAAGAGGAATGTGCGTATCAATT 59.352 36.000 0.00 0.00 0.00 2.32
2258 2682 5.767168 AGAAGGAACAGTTCAAAGAGGAATG 59.233 40.000 15.36 0.00 0.00 2.67
2277 2701 2.266554 GAACAGCTGATGTCGAGAAGG 58.733 52.381 23.35 0.00 43.00 3.46
2335 2759 5.737757 CGCAAAGACAATGATCATTTCTGAG 59.262 40.000 18.41 17.47 34.12 3.35
2479 2904 9.511272 TTTCTTGATGGATGTATATCAATGGAG 57.489 33.333 1.63 0.00 41.10 3.86
2533 2958 5.183713 CCATTTGCCAGTTCATGTAAAGAGA 59.816 40.000 0.00 0.00 0.00 3.10
2551 2976 6.203145 TGAAGTGAACATTCATTTGCCATTTG 59.797 34.615 7.05 0.00 37.27 2.32
2626 3051 3.252458 GGTCAACACGAGGCTAACAAATT 59.748 43.478 0.00 0.00 0.00 1.82
2699 3124 0.397254 ATCCGGTCCAGACACCTAGG 60.397 60.000 7.41 7.41 33.77 3.02
2700 3125 2.359981 TATCCGGTCCAGACACCTAG 57.640 55.000 0.00 0.00 33.77 3.02
2734 3159 3.252458 GCTCTGGGTGTAAAACAACGATT 59.748 43.478 0.00 0.00 36.45 3.34
2736 3161 2.215196 GCTCTGGGTGTAAAACAACGA 58.785 47.619 0.00 0.00 36.45 3.85
2737 3162 1.944024 TGCTCTGGGTGTAAAACAACG 59.056 47.619 0.00 0.00 36.45 4.10
2739 3164 4.331968 CCTATGCTCTGGGTGTAAAACAA 58.668 43.478 0.00 0.00 0.00 2.83
2741 3166 2.683362 GCCTATGCTCTGGGTGTAAAAC 59.317 50.000 0.00 0.00 33.53 2.43
2742 3167 2.999331 GCCTATGCTCTGGGTGTAAAA 58.001 47.619 0.00 0.00 33.53 1.52
2775 3201 2.100879 GAGGGCCATACCTAGCACCG 62.101 65.000 6.18 0.00 42.10 4.94
2783 3209 2.772515 ACAAGACTAAGAGGGCCATACC 59.227 50.000 6.18 0.00 37.93 2.73
2790 3216 3.833070 AGGTGTACACAAGACTAAGAGGG 59.167 47.826 26.51 0.00 0.00 4.30
2804 3230 0.916086 CATAAGGGGGCAGGTGTACA 59.084 55.000 0.00 0.00 0.00 2.90
2815 3241 2.356741 CCATATAACGGGCCATAAGGGG 60.357 54.545 4.39 0.00 37.04 4.79
2841 3267 5.245301 GCACTACCATATCCCTGTGTGTATA 59.755 44.000 0.00 0.00 0.00 1.47
2842 3268 4.040461 GCACTACCATATCCCTGTGTGTAT 59.960 45.833 0.00 0.00 0.00 2.29
2843 3269 3.386726 GCACTACCATATCCCTGTGTGTA 59.613 47.826 0.00 0.00 0.00 2.90
2879 3307 9.757227 GACTTTCAGCTATATACATGAGTTCTT 57.243 33.333 0.00 0.00 0.00 2.52
2933 3361 8.203485 GCATTCCCTCAAAAATATTTGGTCATA 58.797 33.333 0.39 0.00 44.88 2.15
2934 3362 7.049754 GCATTCCCTCAAAAATATTTGGTCAT 58.950 34.615 0.39 0.00 44.88 3.06
2935 3363 6.405538 GCATTCCCTCAAAAATATTTGGTCA 58.594 36.000 0.39 0.00 44.88 4.02
2936 3364 5.817296 GGCATTCCCTCAAAAATATTTGGTC 59.183 40.000 0.39 0.00 44.88 4.02
2937 3365 5.250313 TGGCATTCCCTCAAAAATATTTGGT 59.750 36.000 0.39 0.00 44.88 3.67
2938 3366 5.743117 TGGCATTCCCTCAAAAATATTTGG 58.257 37.500 0.39 0.00 44.88 3.28
2939 3367 7.049133 TGATGGCATTCCCTCAAAAATATTTG 58.951 34.615 0.00 0.00 45.92 2.32
2940 3368 7.197901 TGATGGCATTCCCTCAAAAATATTT 57.802 32.000 0.00 0.00 34.64 1.40
2941 3369 6.811634 TGATGGCATTCCCTCAAAAATATT 57.188 33.333 0.00 0.00 34.64 1.28
2942 3370 6.239772 CCATGATGGCATTCCCTCAAAAATAT 60.240 38.462 0.00 0.00 39.82 1.28
2943 3371 5.070714 CCATGATGGCATTCCCTCAAAAATA 59.929 40.000 0.00 0.00 39.82 1.40
2944 3372 4.141574 CCATGATGGCATTCCCTCAAAAAT 60.142 41.667 0.00 0.00 39.82 1.82
2945 3373 3.198200 CCATGATGGCATTCCCTCAAAAA 59.802 43.478 0.00 0.00 39.82 1.94
2946 3374 2.767394 CCATGATGGCATTCCCTCAAAA 59.233 45.455 0.00 0.00 39.82 2.44
2947 3375 2.390696 CCATGATGGCATTCCCTCAAA 58.609 47.619 0.00 0.00 39.82 2.69
2948 3376 2.076207 CCATGATGGCATTCCCTCAA 57.924 50.000 0.00 0.00 39.82 3.02
2949 3377 3.833729 CCATGATGGCATTCCCTCA 57.166 52.632 0.00 0.00 40.51 3.86
2959 3387 4.076244 GCTGGCTAGCCATGATGG 57.924 61.111 35.93 24.24 46.15 3.51
2968 3396 5.068198 ACAAATTGGTCATATTGCTGGCTAG 59.932 40.000 0.00 0.00 0.00 3.42
2969 3397 4.955450 ACAAATTGGTCATATTGCTGGCTA 59.045 37.500 0.00 0.00 0.00 3.93
2970 3398 3.770933 ACAAATTGGTCATATTGCTGGCT 59.229 39.130 0.00 0.00 0.00 4.75
2971 3399 4.127566 ACAAATTGGTCATATTGCTGGC 57.872 40.909 0.00 0.00 0.00 4.85
2972 3400 6.629128 TGTTACAAATTGGTCATATTGCTGG 58.371 36.000 0.00 0.00 0.00 4.85
2973 3401 7.975058 TCATGTTACAAATTGGTCATATTGCTG 59.025 33.333 0.00 0.00 0.00 4.41
2974 3402 8.065473 TCATGTTACAAATTGGTCATATTGCT 57.935 30.769 0.00 0.00 0.00 3.91
2975 3403 8.700722 TTCATGTTACAAATTGGTCATATTGC 57.299 30.769 0.00 0.00 0.00 3.56
3057 3485 6.507900 TGTTTCGAATACTGGAATTTTGCAA 58.492 32.000 0.00 0.00 0.00 4.08
3338 3766 6.352516 AGCTTCTGAGGATTACGATGAAATT 58.647 36.000 0.00 0.00 0.00 1.82
3356 3784 4.081406 TGGAAACAATGTGCATAGCTTCT 58.919 39.130 0.00 0.00 37.44 2.85
3552 3986 5.230936 GCAAAAAGAGTTCTGTTCAAAGCTC 59.769 40.000 0.00 0.00 0.00 4.09
3600 4034 7.439381 TCCTTAGTTGAGGTAAGTAACACTTG 58.561 38.462 1.84 0.00 36.25 3.16
3601 4035 7.607615 TCCTTAGTTGAGGTAAGTAACACTT 57.392 36.000 0.00 0.00 37.61 3.16
3620 4054 9.241919 TCACAATGAAAAATTAGAGCATCCTTA 57.758 29.630 0.00 0.00 33.66 2.69
3623 4057 8.761575 TTTCACAATGAAAAATTAGAGCATCC 57.238 30.769 1.54 0.00 42.72 3.51
3672 4106 8.192774 TCCACTACGTATATTTTGTAAGTCAGG 58.807 37.037 0.00 0.00 0.00 3.86
3705 4139 1.377333 GGACACTGCTGGGCTAACC 60.377 63.158 0.00 0.00 40.81 2.85
3767 4201 5.805994 CACAGTTACTACTAGGCTTACTTGC 59.194 44.000 0.00 0.00 31.96 4.01
3787 4221 1.306141 TAGGCCCAGTCTCCCACAG 60.306 63.158 0.00 0.00 0.00 3.66
3820 4254 2.288213 CCACTCGACAGTCAGCAGTTAA 60.288 50.000 0.41 0.00 0.00 2.01
3860 4294 7.206981 AGACTTAACATTGTGATCCAAGTTG 57.793 36.000 0.00 0.00 36.25 3.16
3982 7697 0.696501 GGAGCCTCCCACCTACAAAA 59.303 55.000 0.00 0.00 0.00 2.44
4230 7953 6.670695 AATTCAATGCTTTCTGGGTAAAGT 57.329 33.333 0.00 0.00 38.48 2.66
4419 8155 8.011844 AGCAAGTACAAGAAAGAAGGAAAAAT 57.988 30.769 0.00 0.00 0.00 1.82
4425 8161 9.750125 AAATTAAAGCAAGTACAAGAAAGAAGG 57.250 29.630 0.00 0.00 0.00 3.46
4461 8197 2.164624 AGACGACATCCTGTGTAGAAGC 59.835 50.000 0.00 0.00 42.36 3.86
4462 8198 3.191581 ACAGACGACATCCTGTGTAGAAG 59.808 47.826 0.00 0.00 42.36 2.85
4463 8199 3.154710 ACAGACGACATCCTGTGTAGAA 58.845 45.455 0.00 0.00 42.36 2.10
4464 8200 2.791655 ACAGACGACATCCTGTGTAGA 58.208 47.619 0.00 0.00 42.36 2.59
4550 8287 2.827921 AGAATTGTTGGGGAGTGAATGC 59.172 45.455 0.00 0.00 0.00 3.56
4594 8331 2.988684 GCCACGGGCCATCACAAA 60.989 61.111 4.39 0.00 44.06 2.83
4622 8359 0.663153 GAGCAACAAAAGGACAGCGT 59.337 50.000 0.00 0.00 0.00 5.07
4623 8360 0.662619 TGAGCAACAAAAGGACAGCG 59.337 50.000 0.00 0.00 0.00 5.18
4705 8544 4.874970 ACAGTAAGTTTTACACGATCCGT 58.125 39.130 0.00 0.00 42.36 4.69
4727 8566 6.833933 TCACAGCTAAGTATGATCCAGAGTTA 59.166 38.462 0.00 0.00 0.00 2.24
4741 8580 4.460263 TGAACACCAATTCACAGCTAAGT 58.540 39.130 0.00 0.00 33.62 2.24
4743 8582 3.253188 GCTGAACACCAATTCACAGCTAA 59.747 43.478 0.00 0.00 44.51 3.09
4806 8645 6.459257 CATAGATTCGGTATGCAGAAGTTC 57.541 41.667 2.65 0.00 32.71 3.01
4830 8669 2.293677 ACACACTTCTCCACTACGACAG 59.706 50.000 0.00 0.00 0.00 3.51
4831 8670 2.034179 CACACACTTCTCCACTACGACA 59.966 50.000 0.00 0.00 0.00 4.35
4835 8674 4.792521 AGATCACACACTTCTCCACTAC 57.207 45.455 0.00 0.00 0.00 2.73
4839 8678 4.136796 CCAAAAGATCACACACTTCTCCA 58.863 43.478 0.00 0.00 0.00 3.86
4840 8679 4.389374 TCCAAAAGATCACACACTTCTCC 58.611 43.478 0.00 0.00 0.00 3.71
4853 8692 3.102204 CCTTTGCCTGGATCCAAAAGAT 58.898 45.455 27.94 0.00 38.17 2.40
4876 8727 1.336440 TGGTCCAAATTCGTGTGCAAG 59.664 47.619 0.00 0.00 0.00 4.01
4907 8776 1.067250 CGCACCCCAACCAAAACAG 59.933 57.895 0.00 0.00 0.00 3.16
4947 8816 2.052237 CACGCGTTGTCCAAGTGC 60.052 61.111 10.22 0.00 0.00 4.40
4962 8831 1.227853 ACCTGTTGGCGGTTCTCAC 60.228 57.895 0.00 0.00 36.63 3.51
5099 8971 2.238646 AGGGACACCGATCAAAGCATAA 59.761 45.455 0.00 0.00 43.47 1.90
5138 12037 1.757118 TGAGATTAGGCGGTTCAGAGG 59.243 52.381 0.00 0.00 0.00 3.69
5168 12067 3.071479 CGTTGGAATAATCCCATACCGG 58.929 50.000 0.00 0.00 45.95 5.28
5205 12105 8.995906 CGGCAGTTTTATTTAATTTTCGAGTAG 58.004 33.333 0.00 0.00 0.00 2.57
5208 12108 7.749126 AGTCGGCAGTTTTATTTAATTTTCGAG 59.251 33.333 0.00 0.00 0.00 4.04
5216 12118 9.444600 AGAATAAGAGTCGGCAGTTTTATTTAA 57.555 29.630 0.00 0.00 0.00 1.52
5219 12121 7.222224 CGTAGAATAAGAGTCGGCAGTTTTATT 59.778 37.037 0.00 0.00 0.00 1.40
5220 12122 6.696148 CGTAGAATAAGAGTCGGCAGTTTTAT 59.304 38.462 0.00 0.00 0.00 1.40
5221 12123 6.032094 CGTAGAATAAGAGTCGGCAGTTTTA 58.968 40.000 0.00 0.00 0.00 1.52
5222 12124 4.863131 CGTAGAATAAGAGTCGGCAGTTTT 59.137 41.667 0.00 0.00 0.00 2.43
5223 12125 4.082354 ACGTAGAATAAGAGTCGGCAGTTT 60.082 41.667 0.00 0.00 0.00 2.66
5224 12126 3.442977 ACGTAGAATAAGAGTCGGCAGTT 59.557 43.478 0.00 0.00 0.00 3.16
5225 12127 3.015327 ACGTAGAATAAGAGTCGGCAGT 58.985 45.455 0.00 0.00 0.00 4.40
5226 12128 3.694535 ACGTAGAATAAGAGTCGGCAG 57.305 47.619 0.00 0.00 0.00 4.85
5227 12129 4.171005 CAAACGTAGAATAAGAGTCGGCA 58.829 43.478 0.00 0.00 0.00 5.69
5241 12143 2.726691 CGCAGGCCGACAAACGTAG 61.727 63.158 0.00 0.00 40.02 3.51
5273 12177 1.136147 CTACTCGTTGGGGTCGTCG 59.864 63.158 0.00 0.00 0.00 5.12
5276 12180 1.100510 TCATCTACTCGTTGGGGTCG 58.899 55.000 0.00 0.00 0.00 4.79
5279 12183 0.102481 CCGTCATCTACTCGTTGGGG 59.898 60.000 0.00 0.00 0.00 4.96
5286 12191 2.213499 CATTTGGGCCGTCATCTACTC 58.787 52.381 0.00 0.00 0.00 2.59
5303 12208 1.202769 AAATTGGGCCAGGCAGCATT 61.203 50.000 15.19 4.55 0.00 3.56
5334 12239 7.982354 GCGCTAGATAAGACTTGGGATTATTAT 59.018 37.037 0.00 0.00 0.00 1.28
5339 12244 3.643792 AGCGCTAGATAAGACTTGGGATT 59.356 43.478 8.99 0.00 0.00 3.01
5347 12252 2.399448 GCCTGAAGCGCTAGATAAGAC 58.601 52.381 12.05 0.00 0.00 3.01
5376 12281 2.231235 GCACCAGGTACCATTTTTCCTG 59.769 50.000 15.94 0.17 44.74 3.86
5379 12284 3.297830 GTGCACCAGGTACCATTTTTC 57.702 47.619 15.94 0.00 0.00 2.29
5400 12305 1.613836 AAGAAGGAAGTGCAGCAAGG 58.386 50.000 0.00 0.00 0.00 3.61
5403 12308 5.789643 AATTTTAAGAAGGAAGTGCAGCA 57.210 34.783 0.00 0.00 0.00 4.41
5444 12362 4.398319 ACCAACTGAAACCAGATAACCAG 58.602 43.478 0.00 0.00 35.67 4.00
5445 12363 4.447138 ACCAACTGAAACCAGATAACCA 57.553 40.909 0.00 0.00 35.67 3.67
5446 12364 5.784578 AAACCAACTGAAACCAGATAACC 57.215 39.130 0.00 0.00 35.67 2.85
5478 12396 9.051679 AGGAAAAATAAACGGAAAATGGAAAAG 57.948 29.630 0.00 0.00 0.00 2.27
5490 12408 8.169910 ACAAAACGAAAAAGGAAAAATAAACGG 58.830 29.630 0.00 0.00 0.00 4.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.