Multiple sequence alignment - TraesCS1A01G034800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G034800 chr1A 100.000 1744 0 0 1403 3146 17868510 17866767 0.000000e+00 3221.0
1 TraesCS1A01G034800 chr1A 100.000 1116 0 0 1 1116 17869912 17868797 0.000000e+00 2061.0
2 TraesCS1A01G034800 chr1A 88.800 125 7 1 21 145 12785355 12785238 2.530000e-31 147.0
3 TraesCS1A01G034800 chr1A 88.800 125 7 1 21 145 499943595 499943478 2.530000e-31 147.0
4 TraesCS1A01G034800 chr3D 95.148 1752 73 8 1403 3146 61660392 61658645 0.000000e+00 2754.0
5 TraesCS1A01G034800 chr3D 95.470 287 9 4 833 1116 61660738 61660453 3.700000e-124 455.0
6 TraesCS1A01G034800 chr3D 86.301 146 12 3 1 145 571454811 571454673 5.430000e-33 152.0
7 TraesCS1A01G034800 chr2D 95.205 1752 64 9 1403 3146 35814857 35813118 0.000000e+00 2752.0
8 TraesCS1A01G034800 chr2D 94.866 1753 73 9 1403 3146 61251650 61249906 0.000000e+00 2723.0
9 TraesCS1A01G034800 chr2D 95.819 287 8 4 833 1116 61251997 61251712 7.950000e-126 460.0
10 TraesCS1A01G034800 chr2D 89.600 125 6 1 21 145 93589643 93589526 5.430000e-33 152.0
11 TraesCS1A01G034800 chr2D 86.885 61 4 3 763 822 59995198 59995255 7.280000e-07 65.8
12 TraesCS1A01G034800 chr7D 95.091 1752 71 10 1403 3146 617634037 617632293 0.000000e+00 2745.0
13 TraesCS1A01G034800 chr7D 94.923 1753 79 7 1403 3146 19182103 19183854 0.000000e+00 2736.0
14 TraesCS1A01G034800 chr7D 94.774 287 11 4 833 1116 583974123 583974408 8.010000e-121 444.0
15 TraesCS1A01G034800 chr7D 94.425 287 12 4 833 1116 19181758 19182043 3.730000e-119 438.0
16 TraesCS1A01G034800 chr7D 94.425 287 12 4 833 1116 398839801 398840086 3.730000e-119 438.0
17 TraesCS1A01G034800 chr2A 94.749 1752 81 8 1403 3146 706911017 706912765 0.000000e+00 2715.0
18 TraesCS1A01G034800 chr1D 94.695 1753 78 11 1403 3146 461374839 461373093 0.000000e+00 2708.0
19 TraesCS1A01G034800 chr1D 95.122 287 10 4 833 1116 461375186 461374901 1.720000e-122 449.0
20 TraesCS1A01G034800 chr5A 94.118 1751 92 8 1403 3146 660241167 660239421 0.000000e+00 2652.0
21 TraesCS1A01G034800 chr4A 94.027 1758 82 14 1403 3146 667277841 667279589 0.000000e+00 2643.0
22 TraesCS1A01G034800 chr5D 96.000 725 29 0 1 725 539737164 539736440 0.000000e+00 1179.0
23 TraesCS1A01G034800 chr5D 91.453 234 13 2 609 835 539736492 539736259 6.550000e-82 315.0
24 TraesCS1A01G034800 chr3B 91.448 725 38 7 1 725 734997498 734996798 0.000000e+00 974.0
25 TraesCS1A01G034800 chr3B 87.190 242 15 4 609 835 734996850 734996610 8.650000e-66 261.0
26 TraesCS1A01G034800 chr3A 92.417 633 48 0 203 835 94135582 94134950 0.000000e+00 904.0
27 TraesCS1A01G034800 chr3A 97.630 211 5 0 1 211 94145793 94145583 2.310000e-96 363.0
28 TraesCS1A01G034800 chr3A 93.478 92 6 0 627 718 686932413 686932322 1.520000e-28 137.0
29 TraesCS1A01G034800 chr7B 89.325 637 41 8 196 832 11019261 11019870 0.000000e+00 774.0
30 TraesCS1A01G034800 chr7B 91.579 95 8 0 624 718 1058407 1058501 7.080000e-27 132.0
31 TraesCS1A01G034800 chr6A 85.172 553 55 12 202 750 15637238 15636709 2.760000e-150 542.0
32 TraesCS1A01G034800 chr6A 90.960 177 14 1 199 375 105052894 105052720 1.460000e-58 237.0
33 TraesCS1A01G034800 chr6D 94.755 286 13 2 833 1116 11325396 11325681 8.010000e-121 444.0
34 TraesCS1A01G034800 chr6D 94.444 288 12 4 832 1116 470599960 470599674 1.040000e-119 440.0
35 TraesCS1A01G034800 chr6D 85.789 190 18 3 527 710 33787694 33787880 3.200000e-45 193.0
36 TraesCS1A01G034800 chr4D 94.774 287 11 4 833 1116 143573302 143573017 8.010000e-121 444.0
37 TraesCS1A01G034800 chrUn 88.800 125 7 1 21 145 478665545 478665662 2.530000e-31 147.0
38 TraesCS1A01G034800 chr7A 88.800 125 7 1 21 145 511446484 511446367 2.530000e-31 147.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G034800 chr1A 17866767 17869912 3145 True 2641.0 3221 100.0000 1 3146 2 chr1A.!!$R3 3145
1 TraesCS1A01G034800 chr3D 61658645 61660738 2093 True 1604.5 2754 95.3090 833 3146 2 chr3D.!!$R2 2313
2 TraesCS1A01G034800 chr2D 35813118 35814857 1739 True 2752.0 2752 95.2050 1403 3146 1 chr2D.!!$R1 1743
3 TraesCS1A01G034800 chr2D 61249906 61251997 2091 True 1591.5 2723 95.3425 833 3146 2 chr2D.!!$R3 2313
4 TraesCS1A01G034800 chr7D 617632293 617634037 1744 True 2745.0 2745 95.0910 1403 3146 1 chr7D.!!$R1 1743
5 TraesCS1A01G034800 chr7D 19181758 19183854 2096 False 1587.0 2736 94.6740 833 3146 2 chr7D.!!$F3 2313
6 TraesCS1A01G034800 chr2A 706911017 706912765 1748 False 2715.0 2715 94.7490 1403 3146 1 chr2A.!!$F1 1743
7 TraesCS1A01G034800 chr1D 461373093 461375186 2093 True 1578.5 2708 94.9085 833 3146 2 chr1D.!!$R1 2313
8 TraesCS1A01G034800 chr5A 660239421 660241167 1746 True 2652.0 2652 94.1180 1403 3146 1 chr5A.!!$R1 1743
9 TraesCS1A01G034800 chr4A 667277841 667279589 1748 False 2643.0 2643 94.0270 1403 3146 1 chr4A.!!$F1 1743
10 TraesCS1A01G034800 chr5D 539736259 539737164 905 True 747.0 1179 93.7265 1 835 2 chr5D.!!$R1 834
11 TraesCS1A01G034800 chr3B 734996610 734997498 888 True 617.5 974 89.3190 1 835 2 chr3B.!!$R1 834
12 TraesCS1A01G034800 chr3A 94134950 94135582 632 True 904.0 904 92.4170 203 835 1 chr3A.!!$R1 632
13 TraesCS1A01G034800 chr7B 11019261 11019870 609 False 774.0 774 89.3250 196 832 1 chr7B.!!$F2 636
14 TraesCS1A01G034800 chr6A 15636709 15637238 529 True 542.0 542 85.1720 202 750 1 chr6A.!!$R1 548

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
579 582 0.029567 GGTCGTCGTCATCAGGCTAG 59.970 60.0 0.00 0.00 0.00 3.42 F
597 600 0.178992 AGAGCTGATCTCGAGGGGAG 60.179 60.0 13.56 6.85 46.44 4.30 F
622 625 0.250295 CAACACCTCGTCCACACCAT 60.250 55.0 0.00 0.00 0.00 3.55 F
623 626 0.250295 AACACCTCGTCCACACCATG 60.250 55.0 0.00 0.00 0.00 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1568 1573 0.037046 CCCAAGGTTGCCATTCTTGC 60.037 55.0 0.00 0.00 37.24 4.01 R
1817 1841 0.391927 CCGCCTCCAACGGTAAATCA 60.392 55.0 0.00 0.00 45.70 2.57 R
1914 1941 0.680921 CCCACAGTAGCACCAATGGG 60.681 60.0 3.55 1.45 40.87 4.00 R
2264 2324 0.759346 GGGCGACTATGGATGAACCT 59.241 55.0 0.00 0.00 39.86 3.50 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
255 256 1.757699 GGCTAGACAATTCTCTCCCGT 59.242 52.381 0.00 0.00 32.75 5.28
276 279 2.256764 CAGCTGCACGACGTCTCT 59.743 61.111 14.70 0.00 0.00 3.10
277 280 1.372251 CAGCTGCACGACGTCTCTT 60.372 57.895 14.70 0.00 0.00 2.85
278 281 0.941463 CAGCTGCACGACGTCTCTTT 60.941 55.000 14.70 0.00 0.00 2.52
279 282 0.249489 AGCTGCACGACGTCTCTTTT 60.249 50.000 14.70 0.00 0.00 2.27
280 283 0.161870 GCTGCACGACGTCTCTTTTC 59.838 55.000 14.70 0.00 0.00 2.29
281 284 1.772182 CTGCACGACGTCTCTTTTCT 58.228 50.000 14.70 0.00 0.00 2.52
282 285 2.128035 CTGCACGACGTCTCTTTTCTT 58.872 47.619 14.70 0.00 0.00 2.52
283 286 2.124903 TGCACGACGTCTCTTTTCTTC 58.875 47.619 14.70 0.00 0.00 2.87
284 287 2.223735 TGCACGACGTCTCTTTTCTTCT 60.224 45.455 14.70 0.00 0.00 2.85
285 288 2.405690 GCACGACGTCTCTTTTCTTCTC 59.594 50.000 14.70 0.00 0.00 2.87
286 289 3.629058 CACGACGTCTCTTTTCTTCTCA 58.371 45.455 14.70 0.00 0.00 3.27
287 290 3.422546 CACGACGTCTCTTTTCTTCTCAC 59.577 47.826 14.70 0.00 0.00 3.51
288 291 2.981140 CGACGTCTCTTTTCTTCTCACC 59.019 50.000 14.70 0.00 0.00 4.02
289 292 3.318886 GACGTCTCTTTTCTTCTCACCC 58.681 50.000 8.70 0.00 0.00 4.61
290 293 2.966516 ACGTCTCTTTTCTTCTCACCCT 59.033 45.455 0.00 0.00 0.00 4.34
291 294 3.006003 ACGTCTCTTTTCTTCTCACCCTC 59.994 47.826 0.00 0.00 0.00 4.30
292 295 3.257127 CGTCTCTTTTCTTCTCACCCTCT 59.743 47.826 0.00 0.00 0.00 3.69
293 296 4.617298 CGTCTCTTTTCTTCTCACCCTCTC 60.617 50.000 0.00 0.00 0.00 3.20
294 297 4.526650 GTCTCTTTTCTTCTCACCCTCTCT 59.473 45.833 0.00 0.00 0.00 3.10
295 298 4.770010 TCTCTTTTCTTCTCACCCTCTCTC 59.230 45.833 0.00 0.00 0.00 3.20
296 299 3.835395 TCTTTTCTTCTCACCCTCTCTCC 59.165 47.826 0.00 0.00 0.00 3.71
297 300 3.551635 TTTCTTCTCACCCTCTCTCCT 57.448 47.619 0.00 0.00 0.00 3.69
298 301 3.551635 TTCTTCTCACCCTCTCTCCTT 57.448 47.619 0.00 0.00 0.00 3.36
299 302 3.094484 TCTTCTCACCCTCTCTCCTTC 57.906 52.381 0.00 0.00 0.00 3.46
300 303 2.380249 TCTTCTCACCCTCTCTCCTTCA 59.620 50.000 0.00 0.00 0.00 3.02
301 304 2.523325 TCTCACCCTCTCTCCTTCAG 57.477 55.000 0.00 0.00 0.00 3.02
302 305 1.996291 TCTCACCCTCTCTCCTTCAGA 59.004 52.381 0.00 0.00 0.00 3.27
303 306 2.584965 TCTCACCCTCTCTCCTTCAGAT 59.415 50.000 0.00 0.00 0.00 2.90
304 307 2.958355 CTCACCCTCTCTCCTTCAGATC 59.042 54.545 0.00 0.00 0.00 2.75
305 308 2.313041 TCACCCTCTCTCCTTCAGATCA 59.687 50.000 0.00 0.00 0.00 2.92
306 309 3.102972 CACCCTCTCTCCTTCAGATCAA 58.897 50.000 0.00 0.00 0.00 2.57
307 310 3.103742 ACCCTCTCTCCTTCAGATCAAC 58.896 50.000 0.00 0.00 0.00 3.18
308 311 3.102972 CCCTCTCTCCTTCAGATCAACA 58.897 50.000 0.00 0.00 0.00 3.33
309 312 3.118811 CCCTCTCTCCTTCAGATCAACAC 60.119 52.174 0.00 0.00 0.00 3.32
310 313 3.513119 CCTCTCTCCTTCAGATCAACACA 59.487 47.826 0.00 0.00 0.00 3.72
311 314 4.161942 CCTCTCTCCTTCAGATCAACACAT 59.838 45.833 0.00 0.00 0.00 3.21
312 315 5.338219 CCTCTCTCCTTCAGATCAACACATT 60.338 44.000 0.00 0.00 0.00 2.71
313 316 6.119240 TCTCTCCTTCAGATCAACACATTT 57.881 37.500 0.00 0.00 0.00 2.32
314 317 5.936372 TCTCTCCTTCAGATCAACACATTTG 59.064 40.000 0.00 0.00 0.00 2.32
315 318 5.624159 TCTCCTTCAGATCAACACATTTGT 58.376 37.500 0.00 0.00 37.67 2.83
316 319 5.702670 TCTCCTTCAGATCAACACATTTGTC 59.297 40.000 0.00 0.00 33.55 3.18
317 320 5.375773 TCCTTCAGATCAACACATTTGTCA 58.624 37.500 0.00 0.00 33.55 3.58
318 321 6.005823 TCCTTCAGATCAACACATTTGTCAT 58.994 36.000 0.00 0.00 33.55 3.06
319 322 6.491062 TCCTTCAGATCAACACATTTGTCATT 59.509 34.615 0.00 0.00 33.55 2.57
320 323 7.014518 TCCTTCAGATCAACACATTTGTCATTT 59.985 33.333 0.00 0.00 33.55 2.32
321 324 7.115805 CCTTCAGATCAACACATTTGTCATTTG 59.884 37.037 0.00 0.00 33.55 2.32
322 325 6.448852 TCAGATCAACACATTTGTCATTTGG 58.551 36.000 0.00 0.00 33.55 3.28
323 326 5.636121 CAGATCAACACATTTGTCATTTGGG 59.364 40.000 0.00 0.00 33.55 4.12
324 327 4.333913 TCAACACATTTGTCATTTGGGG 57.666 40.909 0.00 0.00 33.55 4.96
325 328 3.963374 TCAACACATTTGTCATTTGGGGA 59.037 39.130 0.00 0.00 33.55 4.81
326 329 4.406972 TCAACACATTTGTCATTTGGGGAA 59.593 37.500 0.00 0.00 33.55 3.97
327 330 5.104776 TCAACACATTTGTCATTTGGGGAAA 60.105 36.000 0.00 0.00 33.55 3.13
328 331 5.565455 ACACATTTGTCATTTGGGGAAAT 57.435 34.783 0.00 0.00 0.00 2.17
329 332 6.678568 ACACATTTGTCATTTGGGGAAATA 57.321 33.333 0.00 0.00 0.00 1.40
330 333 6.700352 ACACATTTGTCATTTGGGGAAATAG 58.300 36.000 0.00 0.00 0.00 1.73
331 334 6.269769 ACACATTTGTCATTTGGGGAAATAGT 59.730 34.615 0.00 0.00 0.00 2.12
332 335 7.453126 ACACATTTGTCATTTGGGGAAATAGTA 59.547 33.333 0.00 0.00 0.00 1.82
333 336 7.975616 CACATTTGTCATTTGGGGAAATAGTAG 59.024 37.037 0.00 0.00 0.00 2.57
334 337 7.893302 ACATTTGTCATTTGGGGAAATAGTAGA 59.107 33.333 0.00 0.00 0.00 2.59
335 338 7.696992 TTTGTCATTTGGGGAAATAGTAGAC 57.303 36.000 0.00 0.00 0.00 2.59
336 339 5.424757 TGTCATTTGGGGAAATAGTAGACG 58.575 41.667 0.00 0.00 0.00 4.18
337 340 5.188163 TGTCATTTGGGGAAATAGTAGACGA 59.812 40.000 0.00 0.00 0.00 4.20
338 341 6.110707 GTCATTTGGGGAAATAGTAGACGAA 58.889 40.000 0.00 0.00 0.00 3.85
339 342 6.596497 GTCATTTGGGGAAATAGTAGACGAAA 59.404 38.462 0.00 0.00 0.00 3.46
340 343 7.282450 GTCATTTGGGGAAATAGTAGACGAAAT 59.718 37.037 0.00 0.00 0.00 2.17
341 344 7.832187 TCATTTGGGGAAATAGTAGACGAAATT 59.168 33.333 0.00 0.00 0.00 1.82
342 345 6.995511 TTGGGGAAATAGTAGACGAAATTG 57.004 37.500 0.00 0.00 0.00 2.32
343 346 5.433526 TGGGGAAATAGTAGACGAAATTGG 58.566 41.667 0.00 0.00 0.00 3.16
344 347 5.190132 TGGGGAAATAGTAGACGAAATTGGA 59.810 40.000 0.00 0.00 0.00 3.53
345 348 6.126594 TGGGGAAATAGTAGACGAAATTGGAT 60.127 38.462 0.00 0.00 0.00 3.41
346 349 6.204882 GGGGAAATAGTAGACGAAATTGGATG 59.795 42.308 0.00 0.00 0.00 3.51
347 350 6.990349 GGGAAATAGTAGACGAAATTGGATGA 59.010 38.462 0.00 0.00 0.00 2.92
348 351 7.497909 GGGAAATAGTAGACGAAATTGGATGAA 59.502 37.037 0.00 0.00 0.00 2.57
349 352 9.057089 GGAAATAGTAGACGAAATTGGATGAAT 57.943 33.333 0.00 0.00 0.00 2.57
354 357 8.299262 AGTAGACGAAATTGGATGAATATTCG 57.701 34.615 10.80 4.39 38.77 3.34
355 358 8.141909 AGTAGACGAAATTGGATGAATATTCGA 58.858 33.333 10.80 1.04 37.64 3.71
356 359 7.969536 AGACGAAATTGGATGAATATTCGAT 57.030 32.000 10.80 5.68 37.64 3.59
357 360 7.800767 AGACGAAATTGGATGAATATTCGATG 58.199 34.615 10.80 0.00 37.64 3.84
358 361 7.442364 AGACGAAATTGGATGAATATTCGATGT 59.558 33.333 10.80 0.00 37.64 3.06
359 362 8.601845 ACGAAATTGGATGAATATTCGATGTA 57.398 30.769 10.80 0.00 37.64 2.29
360 363 9.219603 ACGAAATTGGATGAATATTCGATGTAT 57.780 29.630 10.80 0.00 37.64 2.29
389 392 9.060347 ACATGAATTCAATACTAGCTACAATGG 57.940 33.333 13.09 0.00 0.00 3.16
390 393 9.060347 CATGAATTCAATACTAGCTACAATGGT 57.940 33.333 13.09 0.00 0.00 3.55
391 394 8.662781 TGAATTCAATACTAGCTACAATGGTC 57.337 34.615 5.45 0.00 0.00 4.02
392 395 8.264347 TGAATTCAATACTAGCTACAATGGTCA 58.736 33.333 5.45 0.00 0.00 4.02
393 396 8.438676 AATTCAATACTAGCTACAATGGTCAC 57.561 34.615 0.00 0.00 0.00 3.67
394 397 6.538945 TCAATACTAGCTACAATGGTCACA 57.461 37.500 0.00 0.00 0.00 3.58
395 398 7.124573 TCAATACTAGCTACAATGGTCACAT 57.875 36.000 0.00 0.00 39.54 3.21
396 399 8.245195 TCAATACTAGCTACAATGGTCACATA 57.755 34.615 0.00 0.00 35.94 2.29
397 400 8.141909 TCAATACTAGCTACAATGGTCACATAC 58.858 37.037 0.00 0.00 35.94 2.39
398 401 7.841282 ATACTAGCTACAATGGTCACATACT 57.159 36.000 0.00 0.00 35.94 2.12
399 402 6.546428 ACTAGCTACAATGGTCACATACTT 57.454 37.500 0.00 0.00 35.94 2.24
400 403 6.574350 ACTAGCTACAATGGTCACATACTTC 58.426 40.000 0.00 0.00 35.94 3.01
401 404 5.420725 AGCTACAATGGTCACATACTTCA 57.579 39.130 0.00 0.00 35.94 3.02
402 405 5.994250 AGCTACAATGGTCACATACTTCAT 58.006 37.500 0.00 0.00 35.94 2.57
403 406 6.051717 AGCTACAATGGTCACATACTTCATC 58.948 40.000 0.00 0.00 35.94 2.92
404 407 6.051717 GCTACAATGGTCACATACTTCATCT 58.948 40.000 0.00 0.00 35.94 2.90
405 408 6.540189 GCTACAATGGTCACATACTTCATCTT 59.460 38.462 0.00 0.00 35.94 2.40
406 409 6.992063 ACAATGGTCACATACTTCATCTTC 57.008 37.500 0.00 0.00 35.94 2.87
407 410 6.715280 ACAATGGTCACATACTTCATCTTCT 58.285 36.000 0.00 0.00 35.94 2.85
408 411 7.170965 ACAATGGTCACATACTTCATCTTCTT 58.829 34.615 0.00 0.00 35.94 2.52
409 412 7.667219 ACAATGGTCACATACTTCATCTTCTTT 59.333 33.333 0.00 0.00 35.94 2.52
410 413 8.517878 CAATGGTCACATACTTCATCTTCTTTT 58.482 33.333 0.00 0.00 35.94 2.27
411 414 7.672983 TGGTCACATACTTCATCTTCTTTTC 57.327 36.000 0.00 0.00 0.00 2.29
412 415 7.453393 TGGTCACATACTTCATCTTCTTTTCT 58.547 34.615 0.00 0.00 0.00 2.52
413 416 8.593679 TGGTCACATACTTCATCTTCTTTTCTA 58.406 33.333 0.00 0.00 0.00 2.10
414 417 9.606631 GGTCACATACTTCATCTTCTTTTCTAT 57.393 33.333 0.00 0.00 0.00 1.98
436 439 9.462606 TCTATTAGAGTAGACACACAATGAAGA 57.537 33.333 0.00 0.00 0.00 2.87
437 440 9.729023 CTATTAGAGTAGACACACAATGAAGAG 57.271 37.037 0.00 0.00 0.00 2.85
438 441 7.761038 TTAGAGTAGACACACAATGAAGAGA 57.239 36.000 0.00 0.00 0.00 3.10
439 442 6.266168 AGAGTAGACACACAATGAAGAGAG 57.734 41.667 0.00 0.00 0.00 3.20
440 443 5.772672 AGAGTAGACACACAATGAAGAGAGT 59.227 40.000 0.00 0.00 0.00 3.24
441 444 6.266558 AGAGTAGACACACAATGAAGAGAGTT 59.733 38.462 0.00 0.00 0.00 3.01
442 445 6.219473 AGTAGACACACAATGAAGAGAGTTG 58.781 40.000 0.00 0.00 0.00 3.16
443 446 5.282055 AGACACACAATGAAGAGAGTTGA 57.718 39.130 0.00 0.00 0.00 3.18
444 447 5.053145 AGACACACAATGAAGAGAGTTGAC 58.947 41.667 0.00 0.00 0.00 3.18
445 448 3.804325 ACACACAATGAAGAGAGTTGACG 59.196 43.478 0.00 0.00 0.00 4.35
446 449 3.185188 CACACAATGAAGAGAGTTGACGG 59.815 47.826 0.00 0.00 0.00 4.79
447 450 3.181465 ACACAATGAAGAGAGTTGACGGT 60.181 43.478 0.00 0.00 0.00 4.83
448 451 3.185188 CACAATGAAGAGAGTTGACGGTG 59.815 47.826 0.00 0.00 0.00 4.94
449 452 2.086054 ATGAAGAGAGTTGACGGTGC 57.914 50.000 0.00 0.00 0.00 5.01
450 453 1.040646 TGAAGAGAGTTGACGGTGCT 58.959 50.000 0.00 0.00 0.00 4.40
451 454 1.000163 TGAAGAGAGTTGACGGTGCTC 60.000 52.381 0.00 0.00 0.00 4.26
452 455 0.318762 AAGAGAGTTGACGGTGCTCC 59.681 55.000 0.00 0.00 0.00 4.70
453 456 0.540830 AGAGAGTTGACGGTGCTCCT 60.541 55.000 2.85 0.00 0.00 3.69
454 457 0.109039 GAGAGTTGACGGTGCTCCTC 60.109 60.000 2.85 0.77 0.00 3.71
455 458 1.079750 GAGTTGACGGTGCTCCTCC 60.080 63.158 2.85 0.00 0.00 4.30
456 459 1.534235 AGTTGACGGTGCTCCTCCT 60.534 57.895 2.85 0.00 0.00 3.69
457 460 1.079750 GTTGACGGTGCTCCTCCTC 60.080 63.158 2.85 0.00 0.00 3.71
458 461 1.533033 TTGACGGTGCTCCTCCTCA 60.533 57.895 2.85 0.00 0.00 3.86
459 462 1.118965 TTGACGGTGCTCCTCCTCAA 61.119 55.000 2.85 4.60 0.00 3.02
460 463 1.079750 GACGGTGCTCCTCCTCAAC 60.080 63.158 2.85 0.00 0.00 3.18
461 464 1.534235 ACGGTGCTCCTCCTCAACT 60.534 57.895 2.85 0.00 0.00 3.16
462 465 1.216710 CGGTGCTCCTCCTCAACTC 59.783 63.158 2.85 0.00 0.00 3.01
463 466 1.536073 CGGTGCTCCTCCTCAACTCA 61.536 60.000 2.85 0.00 0.00 3.41
464 467 0.908198 GGTGCTCCTCCTCAACTCAT 59.092 55.000 0.00 0.00 0.00 2.90
465 468 1.406614 GGTGCTCCTCCTCAACTCATG 60.407 57.143 0.00 0.00 0.00 3.07
466 469 0.907486 TGCTCCTCCTCAACTCATGG 59.093 55.000 0.00 0.00 0.00 3.66
467 470 0.908198 GCTCCTCCTCAACTCATGGT 59.092 55.000 0.00 0.00 0.00 3.55
468 471 1.406614 GCTCCTCCTCAACTCATGGTG 60.407 57.143 0.00 0.00 0.00 4.17
469 472 1.209019 CTCCTCCTCAACTCATGGTGG 59.791 57.143 0.00 0.00 36.24 4.61
470 473 0.987294 CCTCCTCAACTCATGGTGGT 59.013 55.000 0.00 0.00 31.84 4.16
471 474 1.339438 CCTCCTCAACTCATGGTGGTG 60.339 57.143 0.00 0.00 31.84 4.17
472 475 1.625315 CTCCTCAACTCATGGTGGTGA 59.375 52.381 7.06 7.06 0.00 4.02
473 476 2.038952 CTCCTCAACTCATGGTGGTGAA 59.961 50.000 8.32 0.00 0.00 3.18
474 477 2.038952 TCCTCAACTCATGGTGGTGAAG 59.961 50.000 8.32 3.73 0.00 3.02
475 478 2.430465 CTCAACTCATGGTGGTGAAGG 58.570 52.381 8.32 0.00 0.00 3.46
476 479 2.038952 CTCAACTCATGGTGGTGAAGGA 59.961 50.000 8.32 0.00 0.00 3.36
477 480 2.441375 TCAACTCATGGTGGTGAAGGAA 59.559 45.455 5.17 0.00 0.00 3.36
478 481 2.816087 CAACTCATGGTGGTGAAGGAAG 59.184 50.000 0.00 0.00 0.00 3.46
479 482 2.338809 ACTCATGGTGGTGAAGGAAGA 58.661 47.619 0.00 0.00 0.00 2.87
480 483 2.304180 ACTCATGGTGGTGAAGGAAGAG 59.696 50.000 0.00 0.00 0.00 2.85
481 484 2.568956 CTCATGGTGGTGAAGGAAGAGA 59.431 50.000 0.00 0.00 0.00 3.10
482 485 2.568956 TCATGGTGGTGAAGGAAGAGAG 59.431 50.000 0.00 0.00 0.00 3.20
483 486 2.398754 TGGTGGTGAAGGAAGAGAGA 57.601 50.000 0.00 0.00 0.00 3.10
484 487 2.251818 TGGTGGTGAAGGAAGAGAGAG 58.748 52.381 0.00 0.00 0.00 3.20
485 488 1.552792 GGTGGTGAAGGAAGAGAGAGG 59.447 57.143 0.00 0.00 0.00 3.69
486 489 1.552792 GTGGTGAAGGAAGAGAGAGGG 59.447 57.143 0.00 0.00 0.00 4.30
487 490 1.199615 GGTGAAGGAAGAGAGAGGGG 58.800 60.000 0.00 0.00 0.00 4.79
488 491 1.553651 GGTGAAGGAAGAGAGAGGGGT 60.554 57.143 0.00 0.00 0.00 4.95
489 492 1.552792 GTGAAGGAAGAGAGAGGGGTG 59.447 57.143 0.00 0.00 0.00 4.61
490 493 0.539518 GAAGGAAGAGAGAGGGGTGC 59.460 60.000 0.00 0.00 0.00 5.01
491 494 0.178891 AAGGAAGAGAGAGGGGTGCA 60.179 55.000 0.00 0.00 0.00 4.57
492 495 0.617249 AGGAAGAGAGAGGGGTGCAG 60.617 60.000 0.00 0.00 0.00 4.41
493 496 1.220477 GAAGAGAGAGGGGTGCAGC 59.780 63.158 7.55 7.55 0.00 5.25
494 497 2.250741 GAAGAGAGAGGGGTGCAGCC 62.251 65.000 27.04 27.04 0.00 4.85
516 519 3.957288 GGGGACGAATATGGATGGG 57.043 57.895 0.00 0.00 0.00 4.00
517 520 0.328258 GGGGACGAATATGGATGGGG 59.672 60.000 0.00 0.00 0.00 4.96
518 521 0.322546 GGGACGAATATGGATGGGGC 60.323 60.000 0.00 0.00 0.00 5.80
519 522 0.693049 GGACGAATATGGATGGGGCT 59.307 55.000 0.00 0.00 0.00 5.19
520 523 1.073923 GGACGAATATGGATGGGGCTT 59.926 52.381 0.00 0.00 0.00 4.35
521 524 2.154462 GACGAATATGGATGGGGCTTG 58.846 52.381 0.00 0.00 0.00 4.01
522 525 1.494721 ACGAATATGGATGGGGCTTGT 59.505 47.619 0.00 0.00 0.00 3.16
523 526 2.154462 CGAATATGGATGGGGCTTGTC 58.846 52.381 0.00 0.00 0.00 3.18
524 527 2.224621 CGAATATGGATGGGGCTTGTCT 60.225 50.000 0.00 0.00 0.00 3.41
525 528 3.748668 CGAATATGGATGGGGCTTGTCTT 60.749 47.826 0.00 0.00 0.00 3.01
526 529 2.734755 TATGGATGGGGCTTGTCTTG 57.265 50.000 0.00 0.00 0.00 3.02
527 530 0.032813 ATGGATGGGGCTTGTCTTGG 60.033 55.000 0.00 0.00 0.00 3.61
528 531 2.054453 GGATGGGGCTTGTCTTGGC 61.054 63.158 0.00 0.00 0.00 4.52
533 536 2.747855 GGCTTGTCTTGGCCGGAG 60.748 66.667 5.05 0.00 38.91 4.63
534 537 3.435186 GCTTGTCTTGGCCGGAGC 61.435 66.667 5.05 0.00 38.76 4.70
535 538 2.032528 CTTGTCTTGGCCGGAGCA 59.967 61.111 5.05 0.00 42.56 4.26
536 539 2.281484 TTGTCTTGGCCGGAGCAC 60.281 61.111 5.05 0.00 42.56 4.40
537 540 4.680237 TGTCTTGGCCGGAGCACG 62.680 66.667 5.05 0.00 42.56 5.34
538 541 4.681978 GTCTTGGCCGGAGCACGT 62.682 66.667 5.05 0.00 42.56 4.49
539 542 4.373116 TCTTGGCCGGAGCACGTC 62.373 66.667 5.05 0.00 42.56 4.34
540 543 4.379243 CTTGGCCGGAGCACGTCT 62.379 66.667 5.05 0.00 42.56 4.18
541 544 3.883744 CTTGGCCGGAGCACGTCTT 62.884 63.158 5.05 0.00 42.56 3.01
542 545 3.876589 TTGGCCGGAGCACGTCTTC 62.877 63.158 5.05 0.00 42.56 2.87
554 557 3.696782 CGTCTTCGTCACCTGTAGG 57.303 57.895 0.00 0.00 42.17 3.18
555 558 0.170561 CGTCTTCGTCACCTGTAGGG 59.829 60.000 2.53 0.00 40.27 3.53
556 559 1.542492 GTCTTCGTCACCTGTAGGGA 58.458 55.000 2.53 0.00 40.27 4.20
557 560 2.100989 GTCTTCGTCACCTGTAGGGAT 58.899 52.381 2.53 0.00 40.27 3.85
558 561 2.099427 GTCTTCGTCACCTGTAGGGATC 59.901 54.545 2.53 0.00 40.27 3.36
559 562 2.100197 CTTCGTCACCTGTAGGGATCA 58.900 52.381 2.53 0.00 40.27 2.92
560 563 1.763968 TCGTCACCTGTAGGGATCAG 58.236 55.000 2.53 0.00 40.27 2.90
565 568 3.209091 CCTGTAGGGATCAGGTCGT 57.791 57.895 0.00 0.00 45.09 4.34
566 569 1.033574 CCTGTAGGGATCAGGTCGTC 58.966 60.000 0.00 0.00 45.09 4.20
567 570 0.663688 CTGTAGGGATCAGGTCGTCG 59.336 60.000 0.00 0.00 0.00 5.12
568 571 0.034767 TGTAGGGATCAGGTCGTCGT 60.035 55.000 0.00 0.00 0.00 4.34
569 572 0.662085 GTAGGGATCAGGTCGTCGTC 59.338 60.000 0.00 0.00 0.00 4.20
570 573 0.253894 TAGGGATCAGGTCGTCGTCA 59.746 55.000 0.00 0.00 0.00 4.35
571 574 0.395862 AGGGATCAGGTCGTCGTCAT 60.396 55.000 0.00 0.00 0.00 3.06
572 575 0.030908 GGGATCAGGTCGTCGTCATC 59.969 60.000 0.00 0.00 0.00 2.92
573 576 0.738975 GGATCAGGTCGTCGTCATCA 59.261 55.000 0.00 0.00 0.00 3.07
574 577 1.268794 GGATCAGGTCGTCGTCATCAG 60.269 57.143 0.00 0.00 0.00 2.90
575 578 0.741326 ATCAGGTCGTCGTCATCAGG 59.259 55.000 0.00 0.00 0.00 3.86
576 579 1.517257 CAGGTCGTCGTCATCAGGC 60.517 63.158 0.00 0.00 0.00 4.85
577 580 1.679305 AGGTCGTCGTCATCAGGCT 60.679 57.895 0.00 0.00 0.00 4.58
578 581 0.393944 AGGTCGTCGTCATCAGGCTA 60.394 55.000 0.00 0.00 0.00 3.93
579 582 0.029567 GGTCGTCGTCATCAGGCTAG 59.970 60.000 0.00 0.00 0.00 3.42
580 583 1.015109 GTCGTCGTCATCAGGCTAGA 58.985 55.000 0.00 0.00 0.00 2.43
581 584 1.003331 GTCGTCGTCATCAGGCTAGAG 60.003 57.143 0.00 0.00 0.00 2.43
582 585 0.317436 CGTCGTCATCAGGCTAGAGC 60.317 60.000 0.00 0.00 41.14 4.09
583 586 1.028905 GTCGTCATCAGGCTAGAGCT 58.971 55.000 0.81 0.00 41.70 4.09
584 587 1.028130 TCGTCATCAGGCTAGAGCTG 58.972 55.000 0.00 0.00 41.70 4.24
585 588 1.028130 CGTCATCAGGCTAGAGCTGA 58.972 55.000 0.00 4.11 41.70 4.26
586 589 1.612950 CGTCATCAGGCTAGAGCTGAT 59.387 52.381 0.00 6.14 41.70 2.90
587 590 2.351641 CGTCATCAGGCTAGAGCTGATC 60.352 54.545 11.26 0.00 41.70 2.92
588 591 2.892852 GTCATCAGGCTAGAGCTGATCT 59.107 50.000 0.00 0.00 42.47 2.75
589 592 3.057315 GTCATCAGGCTAGAGCTGATCTC 60.057 52.174 0.00 0.00 39.64 2.75
590 593 1.603456 TCAGGCTAGAGCTGATCTCG 58.397 55.000 0.00 0.00 46.44 4.04
591 594 1.141858 TCAGGCTAGAGCTGATCTCGA 59.858 52.381 0.00 0.00 46.44 4.04
592 595 1.536766 CAGGCTAGAGCTGATCTCGAG 59.463 57.143 5.93 5.93 46.44 4.04
593 596 0.881118 GGCTAGAGCTGATCTCGAGG 59.119 60.000 13.56 0.00 46.44 4.63
594 597 0.881118 GCTAGAGCTGATCTCGAGGG 59.119 60.000 13.56 2.11 46.44 4.30
595 598 1.533625 CTAGAGCTGATCTCGAGGGG 58.466 60.000 13.56 1.75 46.44 4.79
596 599 1.073125 CTAGAGCTGATCTCGAGGGGA 59.927 57.143 13.56 0.00 46.44 4.81
597 600 0.178992 AGAGCTGATCTCGAGGGGAG 60.179 60.000 13.56 6.85 46.44 4.30
598 601 1.152567 AGCTGATCTCGAGGGGAGG 60.153 63.158 13.56 1.04 43.34 4.30
599 602 2.206536 GCTGATCTCGAGGGGAGGG 61.207 68.421 13.56 0.00 43.34 4.30
600 603 2.123251 TGATCTCGAGGGGAGGGC 60.123 66.667 13.56 0.00 43.34 5.19
601 604 2.200092 GATCTCGAGGGGAGGGCT 59.800 66.667 13.56 0.00 43.34 5.19
602 605 2.123077 ATCTCGAGGGGAGGGCTG 60.123 66.667 13.56 0.00 43.34 4.85
606 609 4.785453 CGAGGGGAGGGCTGCAAC 62.785 72.222 0.50 0.00 0.00 4.17
607 610 3.650950 GAGGGGAGGGCTGCAACA 61.651 66.667 0.50 0.00 0.00 3.33
608 611 3.927481 GAGGGGAGGGCTGCAACAC 62.927 68.421 0.50 0.00 0.00 3.32
610 613 3.971702 GGGAGGGCTGCAACACCT 61.972 66.667 0.50 3.36 37.31 4.00
612 615 2.743928 GAGGGCTGCAACACCTCG 60.744 66.667 13.32 0.00 41.15 4.63
613 616 3.537206 GAGGGCTGCAACACCTCGT 62.537 63.158 13.32 0.00 41.15 4.18
614 617 3.050275 GGGCTGCAACACCTCGTC 61.050 66.667 0.50 0.00 0.00 4.20
615 618 3.050275 GGCTGCAACACCTCGTCC 61.050 66.667 0.50 0.00 0.00 4.79
616 619 2.280797 GCTGCAACACCTCGTCCA 60.281 61.111 0.00 0.00 0.00 4.02
617 620 2.607892 GCTGCAACACCTCGTCCAC 61.608 63.158 0.00 0.00 0.00 4.02
618 621 1.227527 CTGCAACACCTCGTCCACA 60.228 57.895 0.00 0.00 0.00 4.17
619 622 1.498865 CTGCAACACCTCGTCCACAC 61.499 60.000 0.00 0.00 0.00 3.82
620 623 2.251642 GCAACACCTCGTCCACACC 61.252 63.158 0.00 0.00 0.00 4.16
621 624 1.145156 CAACACCTCGTCCACACCA 59.855 57.895 0.00 0.00 0.00 4.17
622 625 0.250295 CAACACCTCGTCCACACCAT 60.250 55.000 0.00 0.00 0.00 3.55
623 626 0.250295 AACACCTCGTCCACACCATG 60.250 55.000 0.00 0.00 0.00 3.66
636 639 2.435938 CCATGGTGGTAGCGCGTT 60.436 61.111 8.43 3.54 31.35 4.84
637 640 2.461110 CCATGGTGGTAGCGCGTTC 61.461 63.158 8.43 0.00 31.35 3.95
638 641 2.508439 ATGGTGGTAGCGCGTTCG 60.508 61.111 8.43 0.00 39.07 3.95
639 642 3.291101 ATGGTGGTAGCGCGTTCGT 62.291 57.895 8.43 0.00 38.14 3.85
640 643 3.475774 GGTGGTAGCGCGTTCGTG 61.476 66.667 8.43 1.25 38.14 4.35
641 644 3.475774 GTGGTAGCGCGTTCGTGG 61.476 66.667 8.43 0.00 38.14 4.94
642 645 3.980989 TGGTAGCGCGTTCGTGGT 61.981 61.111 8.43 14.28 38.14 4.16
643 646 3.475774 GGTAGCGCGTTCGTGGTG 61.476 66.667 18.22 0.00 38.14 4.17
644 647 4.130281 GTAGCGCGTTCGTGGTGC 62.130 66.667 18.22 13.98 41.08 5.01
648 651 3.112075 CGCGTTCGTGGTGCTCAT 61.112 61.111 0.00 0.00 0.00 2.90
649 652 2.778679 GCGTTCGTGGTGCTCATC 59.221 61.111 0.00 0.00 0.00 2.92
650 653 3.071459 GCGTTCGTGGTGCTCATCG 62.071 63.158 0.00 0.00 0.00 3.84
651 654 2.778679 GTTCGTGGTGCTCATCGC 59.221 61.111 0.00 0.00 39.77 4.58
652 655 2.434185 TTCGTGGTGCTCATCGCC 60.434 61.111 0.00 0.00 45.62 5.54
670 673 2.654404 GCCGTCGCGACATACTCC 60.654 66.667 35.71 14.58 0.00 3.85
671 674 2.352001 CCGTCGCGACATACTCCG 60.352 66.667 35.71 21.20 0.00 4.63
676 679 2.353607 GCGACATACTCCGCCTCG 60.354 66.667 0.00 0.00 45.06 4.63
677 680 3.108343 CGACATACTCCGCCTCGT 58.892 61.111 0.00 0.00 0.00 4.18
678 681 1.009900 CGACATACTCCGCCTCGTC 60.010 63.158 0.00 0.00 0.00 4.20
679 682 1.359475 GACATACTCCGCCTCGTCC 59.641 63.158 0.00 0.00 0.00 4.79
680 683 2.073037 GACATACTCCGCCTCGTCCC 62.073 65.000 0.00 0.00 0.00 4.46
681 684 2.521224 ATACTCCGCCTCGTCCCC 60.521 66.667 0.00 0.00 0.00 4.81
682 685 3.369410 ATACTCCGCCTCGTCCCCA 62.369 63.158 0.00 0.00 0.00 4.96
687 690 4.838152 CGCCTCGTCCCCACCATG 62.838 72.222 0.00 0.00 0.00 3.66
688 691 4.489771 GCCTCGTCCCCACCATGG 62.490 72.222 11.19 11.19 37.25 3.66
689 692 3.009115 CCTCGTCCCCACCATGGT 61.009 66.667 13.00 13.00 35.17 3.55
690 693 2.268920 CTCGTCCCCACCATGGTG 59.731 66.667 34.08 34.08 45.02 4.17
700 703 4.201951 CCATGGTGGTAGCACGTC 57.798 61.111 18.23 6.67 31.35 4.34
701 704 1.449601 CCATGGTGGTAGCACGTCC 60.450 63.158 18.23 6.06 31.35 4.79
702 705 1.295101 CATGGTGGTAGCACGTCCA 59.705 57.895 18.23 11.68 0.00 4.02
705 708 2.431942 GTGGTAGCACGTCCACGG 60.432 66.667 9.66 0.00 43.34 4.94
706 709 2.913578 TGGTAGCACGTCCACGGT 60.914 61.111 3.81 0.00 44.95 4.83
707 710 2.431942 GGTAGCACGTCCACGGTG 60.432 66.667 0.00 0.00 44.95 4.94
708 711 3.110178 GTAGCACGTCCACGGTGC 61.110 66.667 8.75 8.75 44.95 5.01
710 713 3.277211 TAGCACGTCCACGGTGCTC 62.277 63.158 21.12 0.00 45.85 4.26
712 715 4.293648 CACGTCCACGGTGCTCCA 62.294 66.667 5.52 0.00 44.95 3.86
713 716 3.311110 ACGTCCACGGTGCTCCAT 61.311 61.111 5.52 0.00 44.95 3.41
714 717 2.815211 CGTCCACGGTGCTCCATG 60.815 66.667 5.52 0.00 35.37 3.66
716 719 2.927856 TCCACGGTGCTCCATGGT 60.928 61.111 18.66 0.00 46.12 3.55
717 720 2.436646 CCACGGTGCTCCATGGTC 60.437 66.667 11.74 5.72 41.64 4.02
718 721 2.815211 CACGGTGCTCCATGGTCG 60.815 66.667 12.58 11.35 0.00 4.79
719 722 2.994995 ACGGTGCTCCATGGTCGA 60.995 61.111 12.58 0.00 0.00 4.20
720 723 2.509336 CGGTGCTCCATGGTCGAC 60.509 66.667 12.58 7.13 0.00 4.20
721 724 2.509336 GGTGCTCCATGGTCGACG 60.509 66.667 12.58 0.00 0.00 5.12
722 725 2.261671 GTGCTCCATGGTCGACGT 59.738 61.111 12.58 0.00 0.00 4.34
723 726 1.805945 GTGCTCCATGGTCGACGTC 60.806 63.158 12.58 5.18 0.00 4.34
724 727 2.579787 GCTCCATGGTCGACGTCG 60.580 66.667 31.30 31.30 41.45 5.12
725 728 2.875485 CTCCATGGTCGACGTCGT 59.125 61.111 34.40 15.32 40.80 4.34
726 729 1.226323 CTCCATGGTCGACGTCGTC 60.226 63.158 34.40 29.05 40.80 4.20
727 730 2.202570 CCATGGTCGACGTCGTCC 60.203 66.667 36.52 36.52 45.43 4.79
728 731 2.697761 CCATGGTCGACGTCGTCCT 61.698 63.158 39.68 27.84 45.43 3.85
729 732 1.226323 CATGGTCGACGTCGTCCTC 60.226 63.158 39.68 26.36 45.43 3.71
730 733 2.404995 ATGGTCGACGTCGTCCTCC 61.405 63.158 39.68 31.59 45.43 4.30
731 734 3.808656 GGTCGACGTCGTCCTCCC 61.809 72.222 36.08 24.52 42.71 4.30
732 735 4.157958 GTCGACGTCGTCCTCCCG 62.158 72.222 34.40 10.27 40.80 5.14
735 738 3.823330 GACGTCGTCCTCCCGCAT 61.823 66.667 14.60 0.00 0.00 4.73
736 739 4.129737 ACGTCGTCCTCCCGCATG 62.130 66.667 0.00 0.00 0.00 4.06
737 740 4.129737 CGTCGTCCTCCCGCATGT 62.130 66.667 0.00 0.00 0.00 3.21
738 741 2.202756 GTCGTCCTCCCGCATGTC 60.203 66.667 0.00 0.00 0.00 3.06
739 742 3.822192 TCGTCCTCCCGCATGTCG 61.822 66.667 0.00 0.00 38.08 4.35
761 764 4.717629 CGCGCAGGAGACGGTGAA 62.718 66.667 8.75 0.00 38.37 3.18
762 765 2.811317 GCGCAGGAGACGGTGAAG 60.811 66.667 0.30 0.00 38.37 3.02
763 766 2.651361 CGCAGGAGACGGTGAAGT 59.349 61.111 0.00 0.00 38.37 3.01
764 767 1.444553 CGCAGGAGACGGTGAAGTC 60.445 63.158 0.00 0.00 38.37 3.01
770 773 3.550656 GACGGTGAAGTCTTGCGG 58.449 61.111 0.00 0.00 38.09 5.69
771 774 1.006571 GACGGTGAAGTCTTGCGGA 60.007 57.895 0.00 0.00 38.09 5.54
772 775 1.006102 ACGGTGAAGTCTTGCGGAG 60.006 57.895 0.00 0.00 0.00 4.63
773 776 1.738099 CGGTGAAGTCTTGCGGAGG 60.738 63.158 0.00 0.00 0.00 4.30
774 777 1.671742 GGTGAAGTCTTGCGGAGGA 59.328 57.895 0.00 0.00 0.00 3.71
775 778 0.390472 GGTGAAGTCTTGCGGAGGAG 60.390 60.000 0.00 0.00 0.00 3.69
776 779 0.390472 GTGAAGTCTTGCGGAGGAGG 60.390 60.000 0.00 0.00 0.00 4.30
777 780 0.541998 TGAAGTCTTGCGGAGGAGGA 60.542 55.000 0.00 0.00 0.00 3.71
779 782 2.182030 GTCTTGCGGAGGAGGACG 59.818 66.667 0.00 0.00 45.44 4.79
780 783 3.068691 TCTTGCGGAGGAGGACGG 61.069 66.667 0.00 0.00 0.00 4.79
781 784 4.821589 CTTGCGGAGGAGGACGGC 62.822 72.222 0.00 0.00 0.00 5.68
784 787 4.821589 GCGGAGGAGGACGGCAAG 62.822 72.222 0.00 0.00 34.55 4.01
785 788 4.148825 CGGAGGAGGACGGCAAGG 62.149 72.222 0.00 0.00 0.00 3.61
786 789 3.787001 GGAGGAGGACGGCAAGGG 61.787 72.222 0.00 0.00 0.00 3.95
787 790 4.475135 GAGGAGGACGGCAAGGGC 62.475 72.222 0.00 0.00 40.13 5.19
796 799 4.785453 GGCAAGGGCGTGAGGAGG 62.785 72.222 0.00 0.00 42.47 4.30
797 800 3.706373 GCAAGGGCGTGAGGAGGA 61.706 66.667 0.00 0.00 0.00 3.71
798 801 2.581354 CAAGGGCGTGAGGAGGAG 59.419 66.667 0.00 0.00 0.00 3.69
799 802 2.685380 AAGGGCGTGAGGAGGAGG 60.685 66.667 0.00 0.00 0.00 4.30
800 803 3.239627 AAGGGCGTGAGGAGGAGGA 62.240 63.158 0.00 0.00 0.00 3.71
801 804 2.683933 GGGCGTGAGGAGGAGGAA 60.684 66.667 0.00 0.00 0.00 3.36
802 805 2.726351 GGGCGTGAGGAGGAGGAAG 61.726 68.421 0.00 0.00 0.00 3.46
803 806 1.985116 GGCGTGAGGAGGAGGAAGT 60.985 63.158 0.00 0.00 0.00 3.01
804 807 1.513622 GCGTGAGGAGGAGGAAGTC 59.486 63.158 0.00 0.00 0.00 3.01
805 808 1.251527 GCGTGAGGAGGAGGAAGTCA 61.252 60.000 0.00 0.00 0.00 3.41
806 809 1.479709 CGTGAGGAGGAGGAAGTCAT 58.520 55.000 0.00 0.00 0.00 3.06
807 810 1.407258 CGTGAGGAGGAGGAAGTCATC 59.593 57.143 0.00 0.00 35.08 2.92
808 811 1.407258 GTGAGGAGGAGGAAGTCATCG 59.593 57.143 0.00 0.00 36.80 3.84
809 812 0.387565 GAGGAGGAGGAAGTCATCGC 59.612 60.000 0.00 0.00 36.80 4.58
810 813 1.045911 AGGAGGAGGAAGTCATCGCC 61.046 60.000 0.00 0.00 36.80 5.54
811 814 1.066587 GAGGAGGAAGTCATCGCCG 59.933 63.158 0.00 0.00 0.00 6.46
812 815 2.107141 GGAGGAAGTCATCGCCGG 59.893 66.667 0.00 0.00 0.00 6.13
813 816 2.107141 GAGGAAGTCATCGCCGGG 59.893 66.667 2.18 0.00 0.00 5.73
814 817 2.363795 AGGAAGTCATCGCCGGGA 60.364 61.111 2.18 0.00 0.00 5.14
815 818 2.107141 GGAAGTCATCGCCGGGAG 59.893 66.667 2.18 0.00 0.00 4.30
861 864 3.487202 CCCATGCGACGTCGTTGG 61.487 66.667 35.26 35.26 41.29 3.77
862 865 2.736995 CCATGCGACGTCGTTGGT 60.737 61.111 34.49 20.80 42.22 3.67
863 866 2.469847 CATGCGACGTCGTTGGTG 59.530 61.111 35.48 24.20 42.22 4.17
880 883 4.356405 TGGTGTGAATTGTCTCTCATGT 57.644 40.909 0.00 0.00 0.00 3.21
886 889 5.999600 TGTGAATTGTCTCTCATGTGACATT 59.000 36.000 15.44 11.23 43.39 2.71
889 892 6.148315 TGAATTGTCTCTCATGTGACATTGTC 59.852 38.462 9.93 9.93 43.39 3.18
950 954 1.154093 GCTGCGTGCGACACTACTA 60.154 57.895 8.07 0.00 31.34 1.82
1562 1567 1.406069 CCTGAAGCGGCTAGTCACAAT 60.406 52.381 1.35 0.00 0.00 2.71
1565 1570 2.289382 TGAAGCGGCTAGTCACAATGAA 60.289 45.455 1.35 0.00 0.00 2.57
1568 1573 0.999406 CGGCTAGTCACAATGAACGG 59.001 55.000 0.00 0.00 0.00 4.44
1606 1611 0.525455 GCGGGAATTCGTGAAATGCC 60.525 55.000 0.00 0.00 41.96 4.40
1809 1833 0.770499 TCAACTGGAGGGTGCATCAA 59.230 50.000 0.00 0.00 31.53 2.57
1817 1841 1.000396 GGGTGCATCAAGGGAGCTT 60.000 57.895 0.00 0.00 0.00 3.74
1879 1903 3.164269 CCCGTCTGGATCTGGGGG 61.164 72.222 0.00 0.00 38.03 5.40
1949 2002 1.997874 GGGGGATGCAGGAGTGACT 60.998 63.158 0.00 0.00 0.00 3.41
2000 2053 5.687770 TGAAGAAACTCATCGAATTGCAA 57.312 34.783 0.00 0.00 0.00 4.08
2337 2397 3.260884 GGGCCGAATAGAACATATCCAGA 59.739 47.826 0.00 0.00 0.00 3.86
2356 2417 5.250543 TCCAGACCCATTCATAAAGAAGTGA 59.749 40.000 0.00 0.00 40.15 3.41
2450 2592 8.962679 ACAAATTTTAAGTTTCCTACAGTCACA 58.037 29.630 0.00 0.00 0.00 3.58
2511 2654 5.621197 TTTTATGCACAAGCTATCGTGTT 57.379 34.783 11.25 4.17 42.74 3.32
2553 2696 5.769484 TGTTTCGGCTAAAACAAATGGTA 57.231 34.783 12.67 0.00 44.02 3.25
2591 2734 6.017605 CAGTCTAACTTGCAGTCTTTGTGAAT 60.018 38.462 0.00 0.00 0.00 2.57
2694 2838 6.088350 TGTTTTCAAAGTTTTTACTCGTGTGC 59.912 34.615 0.00 0.00 0.00 4.57
2761 2907 1.123077 TGTGCCCCTAGTAGCATCTG 58.877 55.000 7.15 0.00 41.86 2.90
2856 3006 9.838975 CACATGCTAACAACAACTTTTATGATA 57.161 29.630 0.00 0.00 0.00 2.15
2929 3083 3.895041 TGGAGAAACTTTAGGCCCAAAAG 59.105 43.478 21.13 21.13 39.38 2.27
2945 3099 8.502738 AGGCCCAAAAGAACATTAATAGATAGA 58.497 33.333 0.00 0.00 0.00 1.98
3114 3269 2.943033 ACCAACACAACACAAGCTAGAC 59.057 45.455 0.00 0.00 0.00 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 3.458189 ACTGTTAGAGATATTGCCGCAC 58.542 45.455 0.00 0.00 0.00 5.34
83 84 0.317160 TGCTACTGCTACTGCGTGTT 59.683 50.000 0.00 0.00 43.34 3.32
255 256 1.372499 GACGTCGTGCAGCTGGTAA 60.372 57.895 17.12 0.00 0.00 2.85
276 279 3.863086 AGGAGAGAGGGTGAGAAGAAAA 58.137 45.455 0.00 0.00 0.00 2.29
277 280 3.551635 AGGAGAGAGGGTGAGAAGAAA 57.448 47.619 0.00 0.00 0.00 2.52
278 281 3.181417 TGAAGGAGAGAGGGTGAGAAGAA 60.181 47.826 0.00 0.00 0.00 2.52
279 282 2.380249 TGAAGGAGAGAGGGTGAGAAGA 59.620 50.000 0.00 0.00 0.00 2.87
280 283 2.760092 CTGAAGGAGAGAGGGTGAGAAG 59.240 54.545 0.00 0.00 0.00 2.85
281 284 2.380249 TCTGAAGGAGAGAGGGTGAGAA 59.620 50.000 0.00 0.00 0.00 2.87
282 285 1.996291 TCTGAAGGAGAGAGGGTGAGA 59.004 52.381 0.00 0.00 0.00 3.27
283 286 2.523325 TCTGAAGGAGAGAGGGTGAG 57.477 55.000 0.00 0.00 0.00 3.51
284 287 2.313041 TGATCTGAAGGAGAGAGGGTGA 59.687 50.000 0.00 0.00 32.80 4.02
285 288 2.744760 TGATCTGAAGGAGAGAGGGTG 58.255 52.381 0.00 0.00 32.80 4.61
286 289 3.103742 GTTGATCTGAAGGAGAGAGGGT 58.896 50.000 0.00 0.00 32.80 4.34
287 290 3.102972 TGTTGATCTGAAGGAGAGAGGG 58.897 50.000 0.00 0.00 32.80 4.30
288 291 3.513119 TGTGTTGATCTGAAGGAGAGAGG 59.487 47.826 0.00 0.00 32.80 3.69
289 292 4.797800 TGTGTTGATCTGAAGGAGAGAG 57.202 45.455 0.00 0.00 32.80 3.20
290 293 5.752036 AATGTGTTGATCTGAAGGAGAGA 57.248 39.130 0.00 0.00 32.80 3.10
291 294 5.704515 ACAAATGTGTTGATCTGAAGGAGAG 59.295 40.000 0.00 0.00 32.58 3.20
292 295 5.624159 ACAAATGTGTTGATCTGAAGGAGA 58.376 37.500 0.00 0.00 32.58 3.71
293 296 5.471116 TGACAAATGTGTTGATCTGAAGGAG 59.529 40.000 0.00 0.00 38.41 3.69
294 297 5.375773 TGACAAATGTGTTGATCTGAAGGA 58.624 37.500 0.00 0.00 38.41 3.36
295 298 5.694231 TGACAAATGTGTTGATCTGAAGG 57.306 39.130 0.00 0.00 38.41 3.46
296 299 7.115805 CCAAATGACAAATGTGTTGATCTGAAG 59.884 37.037 0.00 0.00 38.41 3.02
297 300 6.924612 CCAAATGACAAATGTGTTGATCTGAA 59.075 34.615 0.00 0.00 38.41 3.02
298 301 6.448852 CCAAATGACAAATGTGTTGATCTGA 58.551 36.000 0.00 0.00 38.41 3.27
299 302 5.636121 CCCAAATGACAAATGTGTTGATCTG 59.364 40.000 0.00 0.00 38.41 2.90
300 303 5.279607 CCCCAAATGACAAATGTGTTGATCT 60.280 40.000 0.00 0.00 38.41 2.75
301 304 4.931002 CCCCAAATGACAAATGTGTTGATC 59.069 41.667 0.00 0.00 38.41 2.92
302 305 4.592351 TCCCCAAATGACAAATGTGTTGAT 59.408 37.500 0.00 0.00 38.41 2.57
303 306 3.963374 TCCCCAAATGACAAATGTGTTGA 59.037 39.130 0.00 0.00 38.41 3.18
304 307 4.333913 TCCCCAAATGACAAATGTGTTG 57.666 40.909 0.00 0.00 38.41 3.33
305 308 5.365021 TTTCCCCAAATGACAAATGTGTT 57.635 34.783 0.00 0.00 38.41 3.32
306 309 5.565455 ATTTCCCCAAATGACAAATGTGT 57.435 34.783 0.00 0.00 42.10 3.72
307 310 6.700352 ACTATTTCCCCAAATGACAAATGTG 58.300 36.000 0.00 0.00 33.95 3.21
308 311 6.933514 ACTATTTCCCCAAATGACAAATGT 57.066 33.333 0.00 0.00 33.95 2.71
309 312 8.190784 GTCTACTATTTCCCCAAATGACAAATG 58.809 37.037 0.00 0.00 33.95 2.32
310 313 7.067008 CGTCTACTATTTCCCCAAATGACAAAT 59.933 37.037 0.00 0.00 33.95 2.32
311 314 6.373216 CGTCTACTATTTCCCCAAATGACAAA 59.627 38.462 0.00 0.00 33.95 2.83
312 315 5.878116 CGTCTACTATTTCCCCAAATGACAA 59.122 40.000 0.00 0.00 33.95 3.18
313 316 5.188163 TCGTCTACTATTTCCCCAAATGACA 59.812 40.000 0.00 0.00 33.95 3.58
314 317 5.667466 TCGTCTACTATTTCCCCAAATGAC 58.333 41.667 0.00 0.00 33.95 3.06
315 318 5.943349 TCGTCTACTATTTCCCCAAATGA 57.057 39.130 0.00 0.00 33.95 2.57
316 319 6.995511 TTTCGTCTACTATTTCCCCAAATG 57.004 37.500 0.00 0.00 33.95 2.32
317 320 7.068226 CCAATTTCGTCTACTATTTCCCCAAAT 59.932 37.037 0.00 0.00 36.18 2.32
318 321 6.376018 CCAATTTCGTCTACTATTTCCCCAAA 59.624 38.462 0.00 0.00 0.00 3.28
319 322 5.883673 CCAATTTCGTCTACTATTTCCCCAA 59.116 40.000 0.00 0.00 0.00 4.12
320 323 5.190132 TCCAATTTCGTCTACTATTTCCCCA 59.810 40.000 0.00 0.00 0.00 4.96
321 324 5.677567 TCCAATTTCGTCTACTATTTCCCC 58.322 41.667 0.00 0.00 0.00 4.81
322 325 6.990349 TCATCCAATTTCGTCTACTATTTCCC 59.010 38.462 0.00 0.00 0.00 3.97
323 326 8.433421 TTCATCCAATTTCGTCTACTATTTCC 57.567 34.615 0.00 0.00 0.00 3.13
328 331 9.406828 CGAATATTCATCCAATTTCGTCTACTA 57.593 33.333 15.57 0.00 34.16 1.82
329 332 8.141909 TCGAATATTCATCCAATTTCGTCTACT 58.858 33.333 15.57 0.00 36.90 2.57
330 333 8.294341 TCGAATATTCATCCAATTTCGTCTAC 57.706 34.615 15.57 0.00 36.90 2.59
331 334 8.925700 CATCGAATATTCATCCAATTTCGTCTA 58.074 33.333 15.57 0.00 36.90 2.59
332 335 7.442364 ACATCGAATATTCATCCAATTTCGTCT 59.558 33.333 15.57 0.00 36.90 4.18
333 336 7.576236 ACATCGAATATTCATCCAATTTCGTC 58.424 34.615 15.57 0.00 36.90 4.20
334 337 7.496529 ACATCGAATATTCATCCAATTTCGT 57.503 32.000 15.57 0.00 36.90 3.85
363 366 9.060347 CCATTGTAGCTAGTATTGAATTCATGT 57.940 33.333 9.40 4.09 0.00 3.21
364 367 9.060347 ACCATTGTAGCTAGTATTGAATTCATG 57.940 33.333 9.40 0.00 0.00 3.07
365 368 9.277783 GACCATTGTAGCTAGTATTGAATTCAT 57.722 33.333 9.40 2.50 0.00 2.57
366 369 8.264347 TGACCATTGTAGCTAGTATTGAATTCA 58.736 33.333 3.38 3.38 0.00 2.57
367 370 8.552034 GTGACCATTGTAGCTAGTATTGAATTC 58.448 37.037 0.00 0.00 0.00 2.17
368 371 8.046708 TGTGACCATTGTAGCTAGTATTGAATT 58.953 33.333 0.00 0.00 0.00 2.17
369 372 7.564793 TGTGACCATTGTAGCTAGTATTGAAT 58.435 34.615 0.00 0.00 0.00 2.57
370 373 6.941857 TGTGACCATTGTAGCTAGTATTGAA 58.058 36.000 0.00 0.00 0.00 2.69
371 374 6.538945 TGTGACCATTGTAGCTAGTATTGA 57.461 37.500 0.00 0.00 0.00 2.57
372 375 8.144478 AGTATGTGACCATTGTAGCTAGTATTG 58.856 37.037 0.00 0.00 32.29 1.90
373 376 8.251383 AGTATGTGACCATTGTAGCTAGTATT 57.749 34.615 0.00 0.00 32.29 1.89
374 377 7.841282 AGTATGTGACCATTGTAGCTAGTAT 57.159 36.000 0.00 0.00 32.29 2.12
375 378 7.340999 TGAAGTATGTGACCATTGTAGCTAGTA 59.659 37.037 0.00 0.00 32.29 1.82
376 379 6.154534 TGAAGTATGTGACCATTGTAGCTAGT 59.845 38.462 0.00 0.00 32.29 2.57
377 380 6.573434 TGAAGTATGTGACCATTGTAGCTAG 58.427 40.000 0.00 0.00 32.29 3.42
378 381 6.538945 TGAAGTATGTGACCATTGTAGCTA 57.461 37.500 0.00 0.00 32.29 3.32
379 382 5.420725 TGAAGTATGTGACCATTGTAGCT 57.579 39.130 0.00 0.00 32.29 3.32
380 383 6.051717 AGATGAAGTATGTGACCATTGTAGC 58.948 40.000 0.00 0.00 32.29 3.58
381 384 7.984050 AGAAGATGAAGTATGTGACCATTGTAG 59.016 37.037 0.00 0.00 32.29 2.74
382 385 7.851228 AGAAGATGAAGTATGTGACCATTGTA 58.149 34.615 0.00 0.00 32.29 2.41
383 386 6.715280 AGAAGATGAAGTATGTGACCATTGT 58.285 36.000 0.00 0.00 32.29 2.71
384 387 7.621428 AAGAAGATGAAGTATGTGACCATTG 57.379 36.000 0.00 0.00 32.29 2.82
385 388 8.641498 AAAAGAAGATGAAGTATGTGACCATT 57.359 30.769 0.00 0.00 32.29 3.16
386 389 8.105829 AGAAAAGAAGATGAAGTATGTGACCAT 58.894 33.333 0.00 0.00 34.97 3.55
387 390 7.453393 AGAAAAGAAGATGAAGTATGTGACCA 58.547 34.615 0.00 0.00 0.00 4.02
388 391 7.913674 AGAAAAGAAGATGAAGTATGTGACC 57.086 36.000 0.00 0.00 0.00 4.02
410 413 9.462606 TCTTCATTGTGTGTCTACTCTAATAGA 57.537 33.333 0.00 0.00 0.00 1.98
411 414 9.729023 CTCTTCATTGTGTGTCTACTCTAATAG 57.271 37.037 0.00 0.00 0.00 1.73
412 415 9.462606 TCTCTTCATTGTGTGTCTACTCTAATA 57.537 33.333 0.00 0.00 0.00 0.98
413 416 8.354711 TCTCTTCATTGTGTGTCTACTCTAAT 57.645 34.615 0.00 0.00 0.00 1.73
414 417 7.448777 ACTCTCTTCATTGTGTGTCTACTCTAA 59.551 37.037 0.00 0.00 0.00 2.10
415 418 6.943146 ACTCTCTTCATTGTGTGTCTACTCTA 59.057 38.462 0.00 0.00 0.00 2.43
416 419 5.772672 ACTCTCTTCATTGTGTGTCTACTCT 59.227 40.000 0.00 0.00 0.00 3.24
417 420 6.019779 ACTCTCTTCATTGTGTGTCTACTC 57.980 41.667 0.00 0.00 0.00 2.59
418 421 6.040955 TCAACTCTCTTCATTGTGTGTCTACT 59.959 38.462 0.00 0.00 0.00 2.57
419 422 6.144724 GTCAACTCTCTTCATTGTGTGTCTAC 59.855 42.308 0.00 0.00 0.00 2.59
420 423 6.216569 GTCAACTCTCTTCATTGTGTGTCTA 58.783 40.000 0.00 0.00 0.00 2.59
421 424 5.053145 GTCAACTCTCTTCATTGTGTGTCT 58.947 41.667 0.00 0.00 0.00 3.41
422 425 4.084849 CGTCAACTCTCTTCATTGTGTGTC 60.085 45.833 0.00 0.00 0.00 3.67
423 426 3.804325 CGTCAACTCTCTTCATTGTGTGT 59.196 43.478 0.00 0.00 0.00 3.72
424 427 3.185188 CCGTCAACTCTCTTCATTGTGTG 59.815 47.826 0.00 0.00 0.00 3.82
425 428 3.181465 ACCGTCAACTCTCTTCATTGTGT 60.181 43.478 0.00 0.00 0.00 3.72
426 429 3.185188 CACCGTCAACTCTCTTCATTGTG 59.815 47.826 0.00 0.00 0.00 3.33
427 430 3.393800 CACCGTCAACTCTCTTCATTGT 58.606 45.455 0.00 0.00 0.00 2.71
428 431 2.158449 GCACCGTCAACTCTCTTCATTG 59.842 50.000 0.00 0.00 0.00 2.82
429 432 2.037772 AGCACCGTCAACTCTCTTCATT 59.962 45.455 0.00 0.00 0.00 2.57
430 433 1.620819 AGCACCGTCAACTCTCTTCAT 59.379 47.619 0.00 0.00 0.00 2.57
431 434 1.000163 GAGCACCGTCAACTCTCTTCA 60.000 52.381 0.00 0.00 0.00 3.02
432 435 1.670380 GGAGCACCGTCAACTCTCTTC 60.670 57.143 0.00 0.00 0.00 2.87
433 436 0.318762 GGAGCACCGTCAACTCTCTT 59.681 55.000 0.00 0.00 0.00 2.85
434 437 0.540830 AGGAGCACCGTCAACTCTCT 60.541 55.000 0.00 0.00 41.83 3.10
435 438 0.109039 GAGGAGCACCGTCAACTCTC 60.109 60.000 0.00 0.00 41.83 3.20
436 439 1.536943 GGAGGAGCACCGTCAACTCT 61.537 60.000 0.00 0.00 41.83 3.24
437 440 1.079750 GGAGGAGCACCGTCAACTC 60.080 63.158 0.00 0.00 41.83 3.01
438 441 1.534235 AGGAGGAGCACCGTCAACT 60.534 57.895 0.00 0.00 41.83 3.16
439 442 1.079750 GAGGAGGAGCACCGTCAAC 60.080 63.158 0.00 0.00 41.83 3.18
440 443 1.118965 TTGAGGAGGAGCACCGTCAA 61.119 55.000 10.21 10.21 41.83 3.18
441 444 1.533033 TTGAGGAGGAGCACCGTCA 60.533 57.895 0.00 0.00 41.83 4.35
442 445 1.079750 GTTGAGGAGGAGCACCGTC 60.080 63.158 0.00 0.00 41.83 4.79
443 446 1.534235 AGTTGAGGAGGAGCACCGT 60.534 57.895 0.00 0.00 41.83 4.83
444 447 1.216710 GAGTTGAGGAGGAGCACCG 59.783 63.158 0.00 0.00 41.83 4.94
445 448 0.908198 ATGAGTTGAGGAGGAGCACC 59.092 55.000 0.00 0.00 0.00 5.01
446 449 1.406614 CCATGAGTTGAGGAGGAGCAC 60.407 57.143 0.00 0.00 0.00 4.40
447 450 0.907486 CCATGAGTTGAGGAGGAGCA 59.093 55.000 0.00 0.00 0.00 4.26
448 451 0.908198 ACCATGAGTTGAGGAGGAGC 59.092 55.000 0.00 0.00 0.00 4.70
449 452 1.209019 CCACCATGAGTTGAGGAGGAG 59.791 57.143 0.00 0.00 35.46 3.69
450 453 1.279496 CCACCATGAGTTGAGGAGGA 58.721 55.000 0.00 0.00 35.46 3.71
451 454 0.987294 ACCACCATGAGTTGAGGAGG 59.013 55.000 0.00 0.00 38.86 4.30
452 455 1.625315 TCACCACCATGAGTTGAGGAG 59.375 52.381 0.00 0.00 0.00 3.69
453 456 1.728323 TCACCACCATGAGTTGAGGA 58.272 50.000 0.00 0.00 0.00 3.71
454 457 2.430465 CTTCACCACCATGAGTTGAGG 58.570 52.381 0.00 0.00 0.00 3.86
455 458 2.038952 TCCTTCACCACCATGAGTTGAG 59.961 50.000 0.00 0.00 0.00 3.02
456 459 2.054021 TCCTTCACCACCATGAGTTGA 58.946 47.619 0.00 0.00 0.00 3.18
457 460 2.566833 TCCTTCACCACCATGAGTTG 57.433 50.000 0.00 0.00 0.00 3.16
458 461 2.711009 TCTTCCTTCACCACCATGAGTT 59.289 45.455 0.00 0.00 0.00 3.01
459 462 2.304180 CTCTTCCTTCACCACCATGAGT 59.696 50.000 0.00 0.00 0.00 3.41
460 463 2.568956 TCTCTTCCTTCACCACCATGAG 59.431 50.000 0.00 0.00 0.00 2.90
461 464 2.568956 CTCTCTTCCTTCACCACCATGA 59.431 50.000 0.00 0.00 0.00 3.07
462 465 2.568956 TCTCTCTTCCTTCACCACCATG 59.431 50.000 0.00 0.00 0.00 3.66
463 466 2.836981 CTCTCTCTTCCTTCACCACCAT 59.163 50.000 0.00 0.00 0.00 3.55
464 467 2.251818 CTCTCTCTTCCTTCACCACCA 58.748 52.381 0.00 0.00 0.00 4.17
465 468 1.552792 CCTCTCTCTTCCTTCACCACC 59.447 57.143 0.00 0.00 0.00 4.61
466 469 1.552792 CCCTCTCTCTTCCTTCACCAC 59.447 57.143 0.00 0.00 0.00 4.16
467 470 1.553417 CCCCTCTCTCTTCCTTCACCA 60.553 57.143 0.00 0.00 0.00 4.17
468 471 1.199615 CCCCTCTCTCTTCCTTCACC 58.800 60.000 0.00 0.00 0.00 4.02
469 472 1.552792 CACCCCTCTCTCTTCCTTCAC 59.447 57.143 0.00 0.00 0.00 3.18
470 473 1.944177 CACCCCTCTCTCTTCCTTCA 58.056 55.000 0.00 0.00 0.00 3.02
471 474 0.539518 GCACCCCTCTCTCTTCCTTC 59.460 60.000 0.00 0.00 0.00 3.46
472 475 0.178891 TGCACCCCTCTCTCTTCCTT 60.179 55.000 0.00 0.00 0.00 3.36
473 476 0.617249 CTGCACCCCTCTCTCTTCCT 60.617 60.000 0.00 0.00 0.00 3.36
474 477 1.904032 CTGCACCCCTCTCTCTTCC 59.096 63.158 0.00 0.00 0.00 3.46
475 478 1.220477 GCTGCACCCCTCTCTCTTC 59.780 63.158 0.00 0.00 0.00 2.87
476 479 2.297129 GGCTGCACCCCTCTCTCTT 61.297 63.158 0.50 0.00 0.00 2.85
477 480 2.686835 GGCTGCACCCCTCTCTCT 60.687 66.667 0.50 0.00 0.00 3.10
492 495 4.309950 ATATTCGTCCCCGCGGGC 62.310 66.667 39.46 24.92 43.94 6.13
493 496 2.357034 CATATTCGTCCCCGCGGG 60.357 66.667 37.99 37.99 46.11 6.13
494 497 2.167398 ATCCATATTCGTCCCCGCGG 62.167 60.000 21.04 21.04 0.00 6.46
495 498 1.014044 CATCCATATTCGTCCCCGCG 61.014 60.000 0.00 0.00 0.00 6.46
496 499 0.673644 CCATCCATATTCGTCCCCGC 60.674 60.000 0.00 0.00 0.00 6.13
497 500 0.036388 CCCATCCATATTCGTCCCCG 60.036 60.000 0.00 0.00 0.00 5.73
498 501 0.328258 CCCCATCCATATTCGTCCCC 59.672 60.000 0.00 0.00 0.00 4.81
499 502 0.322546 GCCCCATCCATATTCGTCCC 60.323 60.000 0.00 0.00 0.00 4.46
500 503 0.693049 AGCCCCATCCATATTCGTCC 59.307 55.000 0.00 0.00 0.00 4.79
501 504 2.154462 CAAGCCCCATCCATATTCGTC 58.846 52.381 0.00 0.00 0.00 4.20
502 505 1.494721 ACAAGCCCCATCCATATTCGT 59.505 47.619 0.00 0.00 0.00 3.85
503 506 2.154462 GACAAGCCCCATCCATATTCG 58.846 52.381 0.00 0.00 0.00 3.34
504 507 3.515602 AGACAAGCCCCATCCATATTC 57.484 47.619 0.00 0.00 0.00 1.75
505 508 3.569491 CAAGACAAGCCCCATCCATATT 58.431 45.455 0.00 0.00 0.00 1.28
506 509 2.158415 CCAAGACAAGCCCCATCCATAT 60.158 50.000 0.00 0.00 0.00 1.78
507 510 1.215173 CCAAGACAAGCCCCATCCATA 59.785 52.381 0.00 0.00 0.00 2.74
508 511 0.032813 CCAAGACAAGCCCCATCCAT 60.033 55.000 0.00 0.00 0.00 3.41
509 512 1.383799 CCAAGACAAGCCCCATCCA 59.616 57.895 0.00 0.00 0.00 3.41
510 513 2.054453 GCCAAGACAAGCCCCATCC 61.054 63.158 0.00 0.00 0.00 3.51
511 514 2.054453 GGCCAAGACAAGCCCCATC 61.054 63.158 0.00 0.00 43.76 3.51
512 515 2.037847 GGCCAAGACAAGCCCCAT 59.962 61.111 0.00 0.00 43.76 4.00
516 519 2.747855 CTCCGGCCAAGACAAGCC 60.748 66.667 2.24 0.00 46.17 4.35
517 520 3.435186 GCTCCGGCCAAGACAAGC 61.435 66.667 2.24 0.00 0.00 4.01
518 521 2.032528 TGCTCCGGCCAAGACAAG 59.967 61.111 2.24 0.00 37.74 3.16
519 522 2.281484 GTGCTCCGGCCAAGACAA 60.281 61.111 2.24 0.00 37.74 3.18
520 523 4.680237 CGTGCTCCGGCCAAGACA 62.680 66.667 2.24 0.00 37.74 3.41
521 524 4.681978 ACGTGCTCCGGCCAAGAC 62.682 66.667 2.24 0.00 42.24 3.01
522 525 4.373116 GACGTGCTCCGGCCAAGA 62.373 66.667 2.24 0.00 39.28 3.02
535 538 4.779748 TCCCTACAGGTGACGAAGACGT 62.780 54.545 0.00 0.00 46.11 4.34
536 539 0.170561 CCCTACAGGTGACGAAGACG 59.829 60.000 0.00 0.00 45.75 4.18
537 540 1.542492 TCCCTACAGGTGACGAAGAC 58.458 55.000 0.00 0.00 36.75 3.01
538 541 2.291346 TGATCCCTACAGGTGACGAAGA 60.291 50.000 0.00 0.00 36.75 2.87
539 542 2.099921 CTGATCCCTACAGGTGACGAAG 59.900 54.545 0.00 0.00 36.75 3.79
540 543 2.100197 CTGATCCCTACAGGTGACGAA 58.900 52.381 0.00 0.00 36.75 3.85
541 544 1.685180 CCTGATCCCTACAGGTGACGA 60.685 57.143 0.00 0.00 46.71 4.20
542 545 0.747255 CCTGATCCCTACAGGTGACG 59.253 60.000 0.00 0.00 46.71 4.35
548 551 0.663688 CGACGACCTGATCCCTACAG 59.336 60.000 0.00 0.00 35.43 2.74
549 552 0.034767 ACGACGACCTGATCCCTACA 60.035 55.000 0.00 0.00 0.00 2.74
550 553 0.662085 GACGACGACCTGATCCCTAC 59.338 60.000 0.00 0.00 0.00 3.18
551 554 0.253894 TGACGACGACCTGATCCCTA 59.746 55.000 0.00 0.00 0.00 3.53
552 555 0.395862 ATGACGACGACCTGATCCCT 60.396 55.000 0.00 0.00 0.00 4.20
553 556 0.030908 GATGACGACGACCTGATCCC 59.969 60.000 0.00 0.00 0.00 3.85
554 557 0.738975 TGATGACGACGACCTGATCC 59.261 55.000 0.00 0.00 0.00 3.36
555 558 1.268794 CCTGATGACGACGACCTGATC 60.269 57.143 0.00 0.00 0.00 2.92
556 559 0.741326 CCTGATGACGACGACCTGAT 59.259 55.000 0.00 0.00 0.00 2.90
557 560 1.934220 GCCTGATGACGACGACCTGA 61.934 60.000 0.00 0.00 0.00 3.86
558 561 1.517257 GCCTGATGACGACGACCTG 60.517 63.158 0.00 0.00 0.00 4.00
559 562 0.393944 TAGCCTGATGACGACGACCT 60.394 55.000 0.00 0.00 0.00 3.85
560 563 0.029567 CTAGCCTGATGACGACGACC 59.970 60.000 0.00 0.00 0.00 4.79
561 564 1.003331 CTCTAGCCTGATGACGACGAC 60.003 57.143 0.00 0.00 0.00 4.34
562 565 1.300481 CTCTAGCCTGATGACGACGA 58.700 55.000 0.00 0.00 0.00 4.20
563 566 0.317436 GCTCTAGCCTGATGACGACG 60.317 60.000 0.00 0.00 34.31 5.12
564 567 1.028905 AGCTCTAGCCTGATGACGAC 58.971 55.000 0.00 0.00 43.38 4.34
565 568 1.028130 CAGCTCTAGCCTGATGACGA 58.972 55.000 0.00 0.00 43.38 4.20
566 569 1.028130 TCAGCTCTAGCCTGATGACG 58.972 55.000 8.35 0.00 43.38 4.35
567 570 2.892852 AGATCAGCTCTAGCCTGATGAC 59.107 50.000 22.52 13.35 43.38 3.06
568 571 3.156293 GAGATCAGCTCTAGCCTGATGA 58.844 50.000 22.52 13.08 43.38 2.92
569 572 2.095110 CGAGATCAGCTCTAGCCTGATG 60.095 54.545 22.52 9.01 41.66 3.07
570 573 2.161855 CGAGATCAGCTCTAGCCTGAT 58.838 52.381 19.43 19.43 41.66 2.90
571 574 1.141858 TCGAGATCAGCTCTAGCCTGA 59.858 52.381 13.16 13.16 41.66 3.86
572 575 1.536766 CTCGAGATCAGCTCTAGCCTG 59.463 57.143 6.58 4.41 41.66 4.85
573 576 1.545428 CCTCGAGATCAGCTCTAGCCT 60.545 57.143 15.71 0.00 41.66 4.58
574 577 0.881118 CCTCGAGATCAGCTCTAGCC 59.119 60.000 15.71 0.00 41.66 3.93
575 578 0.881118 CCCTCGAGATCAGCTCTAGC 59.119 60.000 15.71 0.00 41.66 3.42
576 579 1.073125 TCCCCTCGAGATCAGCTCTAG 59.927 57.143 15.71 0.00 41.66 2.43
577 580 1.073125 CTCCCCTCGAGATCAGCTCTA 59.927 57.143 15.71 0.00 41.63 2.43
578 581 0.178992 CTCCCCTCGAGATCAGCTCT 60.179 60.000 15.71 0.00 41.63 4.09
579 582 1.178534 CCTCCCCTCGAGATCAGCTC 61.179 65.000 15.71 0.00 41.63 4.09
580 583 1.152567 CCTCCCCTCGAGATCAGCT 60.153 63.158 15.71 0.00 41.63 4.24
581 584 2.206536 CCCTCCCCTCGAGATCAGC 61.207 68.421 15.71 0.00 41.63 4.26
582 585 2.206536 GCCCTCCCCTCGAGATCAG 61.207 68.421 15.71 5.76 41.63 2.90
583 586 2.123251 GCCCTCCCCTCGAGATCA 60.123 66.667 15.71 0.00 41.63 2.92
584 587 2.200092 AGCCCTCCCCTCGAGATC 59.800 66.667 15.71 0.00 41.63 2.75
585 588 2.123077 CAGCCCTCCCCTCGAGAT 60.123 66.667 15.71 0.00 41.63 2.75
589 592 4.785453 GTTGCAGCCCTCCCCTCG 62.785 72.222 0.00 0.00 0.00 4.63
590 593 3.650950 TGTTGCAGCCCTCCCCTC 61.651 66.667 0.00 0.00 0.00 4.30
591 594 3.971702 GTGTTGCAGCCCTCCCCT 61.972 66.667 0.00 0.00 0.00 4.79
593 596 3.927481 GAGGTGTTGCAGCCCTCCC 62.927 68.421 20.25 7.05 39.10 4.30
594 597 2.360475 GAGGTGTTGCAGCCCTCC 60.360 66.667 20.25 11.07 39.10 4.30
595 598 2.743928 CGAGGTGTTGCAGCCCTC 60.744 66.667 20.69 20.69 41.15 4.30
596 599 3.537206 GACGAGGTGTTGCAGCCCT 62.537 63.158 9.73 9.73 31.60 5.19
597 600 3.050275 GACGAGGTGTTGCAGCCC 61.050 66.667 0.00 0.00 31.60 5.19
598 601 3.050275 GGACGAGGTGTTGCAGCC 61.050 66.667 0.00 0.00 31.60 4.85
599 602 2.280797 TGGACGAGGTGTTGCAGC 60.281 61.111 0.00 0.00 0.00 5.25
600 603 1.227527 TGTGGACGAGGTGTTGCAG 60.228 57.895 0.00 0.00 0.00 4.41
601 604 1.522806 GTGTGGACGAGGTGTTGCA 60.523 57.895 0.00 0.00 0.00 4.08
602 605 2.251642 GGTGTGGACGAGGTGTTGC 61.252 63.158 0.00 0.00 0.00 4.17
603 606 0.250295 ATGGTGTGGACGAGGTGTTG 60.250 55.000 0.00 0.00 0.00 3.33
604 607 0.250295 CATGGTGTGGACGAGGTGTT 60.250 55.000 0.00 0.00 0.00 3.32
605 608 1.371183 CATGGTGTGGACGAGGTGT 59.629 57.895 0.00 0.00 0.00 4.16
606 609 4.284123 CATGGTGTGGACGAGGTG 57.716 61.111 0.00 0.00 0.00 4.00
619 622 2.435938 AACGCGCTACCACCATGG 60.436 61.111 11.19 11.19 45.02 3.66
620 623 2.798501 CGAACGCGCTACCACCATG 61.799 63.158 5.73 0.00 0.00 3.66
621 624 2.508439 CGAACGCGCTACCACCAT 60.508 61.111 5.73 0.00 0.00 3.55
622 625 3.980989 ACGAACGCGCTACCACCA 61.981 61.111 5.73 0.00 42.48 4.17
623 626 3.475774 CACGAACGCGCTACCACC 61.476 66.667 5.73 0.00 42.48 4.61
624 627 3.475774 CCACGAACGCGCTACCAC 61.476 66.667 5.73 0.00 42.48 4.16
625 628 3.980989 ACCACGAACGCGCTACCA 61.981 61.111 5.73 0.00 42.48 3.25
626 629 3.475774 CACCACGAACGCGCTACC 61.476 66.667 5.73 0.00 42.48 3.18
627 630 4.130281 GCACCACGAACGCGCTAC 62.130 66.667 5.73 0.00 42.48 3.58
628 631 4.351938 AGCACCACGAACGCGCTA 62.352 61.111 5.73 0.00 42.48 4.26
631 634 3.071459 GATGAGCACCACGAACGCG 62.071 63.158 3.53 3.53 44.79 6.01
632 635 2.778679 GATGAGCACCACGAACGC 59.221 61.111 0.00 0.00 0.00 4.84
633 636 3.072598 CGATGAGCACCACGAACG 58.927 61.111 0.00 0.00 0.00 3.95
653 656 2.654404 GGAGTATGTCGCGACGGC 60.654 66.667 31.88 23.37 0.00 5.68
654 657 2.352001 CGGAGTATGTCGCGACGG 60.352 66.667 31.88 9.82 0.00 4.79
655 658 3.017314 GCGGAGTATGTCGCGACG 61.017 66.667 31.88 20.15 42.48 5.12
660 663 1.009900 GACGAGGCGGAGTATGTCG 60.010 63.158 0.00 0.00 36.71 4.35
661 664 1.359475 GGACGAGGCGGAGTATGTC 59.641 63.158 0.00 0.00 0.00 3.06
662 665 2.125961 GGGACGAGGCGGAGTATGT 61.126 63.158 0.00 0.00 0.00 2.29
663 666 2.728817 GGGACGAGGCGGAGTATG 59.271 66.667 0.00 0.00 0.00 2.39
664 667 2.521224 GGGGACGAGGCGGAGTAT 60.521 66.667 0.00 0.00 0.00 2.12
665 668 4.051167 TGGGGACGAGGCGGAGTA 62.051 66.667 0.00 0.00 0.00 2.59
670 673 4.838152 CATGGTGGGGACGAGGCG 62.838 72.222 0.00 0.00 0.00 5.52
671 674 4.489771 CCATGGTGGGGACGAGGC 62.490 72.222 2.57 0.00 32.67 4.70
672 675 3.009115 ACCATGGTGGGGACGAGG 61.009 66.667 18.99 0.00 43.37 4.63
673 676 2.268920 CACCATGGTGGGGACGAG 59.731 66.667 33.56 8.57 46.22 4.18
683 686 1.449601 GGACGTGCTACCACCATGG 60.450 63.158 11.19 11.19 45.02 3.66
684 687 1.295101 TGGACGTGCTACCACCATG 59.705 57.895 8.99 0.00 38.79 3.66
685 688 3.800188 TGGACGTGCTACCACCAT 58.200 55.556 8.99 0.00 38.79 3.55
689 692 2.913578 ACCGTGGACGTGCTACCA 60.914 61.111 8.99 0.00 37.74 3.25
690 693 2.431942 CACCGTGGACGTGCTACC 60.432 66.667 8.99 0.00 37.74 3.18
691 694 3.110178 GCACCGTGGACGTGCTAC 61.110 66.667 8.99 4.15 40.50 3.58
692 695 3.299977 AGCACCGTGGACGTGCTA 61.300 61.111 20.24 0.00 46.44 3.49
695 698 3.589654 ATGGAGCACCGTGGACGTG 62.590 63.158 0.00 0.00 39.42 4.49
696 699 3.311110 ATGGAGCACCGTGGACGT 61.311 61.111 0.00 0.00 39.42 4.34
697 700 2.815211 CATGGAGCACCGTGGACG 60.815 66.667 14.12 0.00 46.26 4.79
702 705 2.994995 TCGACCATGGAGCACCGT 60.995 61.111 21.47 0.00 39.42 4.83
703 706 2.509336 GTCGACCATGGAGCACCG 60.509 66.667 21.47 13.03 39.42 4.94
704 707 2.509336 CGTCGACCATGGAGCACC 60.509 66.667 21.47 0.82 0.00 5.01
705 708 1.805945 GACGTCGACCATGGAGCAC 60.806 63.158 21.47 10.06 0.00 4.40
706 709 2.571757 GACGTCGACCATGGAGCA 59.428 61.111 21.47 0.00 0.00 4.26
707 710 2.579787 CGACGTCGACCATGGAGC 60.580 66.667 33.35 9.10 43.02 4.70
708 711 1.226323 GACGACGTCGACCATGGAG 60.226 63.158 41.52 12.28 43.02 3.86
709 712 2.872557 GACGACGTCGACCATGGA 59.127 61.111 41.52 0.00 43.02 3.41
715 718 4.157958 CGGGAGGACGACGTCGAC 62.158 72.222 41.52 34.47 43.02 4.20
718 721 3.823330 ATGCGGGAGGACGACGTC 61.823 66.667 19.70 19.70 35.47 4.34
719 722 4.129737 CATGCGGGAGGACGACGT 62.130 66.667 0.00 0.00 35.47 4.34
720 723 4.129737 ACATGCGGGAGGACGACG 62.130 66.667 0.00 0.00 35.47 5.12
721 724 2.202756 GACATGCGGGAGGACGAC 60.203 66.667 0.00 0.00 35.47 4.34
722 725 3.822192 CGACATGCGGGAGGACGA 61.822 66.667 0.00 0.00 36.03 4.20
744 747 4.717629 TTCACCGTCTCCTGCGCG 62.718 66.667 0.00 0.00 0.00 6.86
745 748 2.811317 CTTCACCGTCTCCTGCGC 60.811 66.667 0.00 0.00 0.00 6.09
746 749 1.444553 GACTTCACCGTCTCCTGCG 60.445 63.158 0.00 0.00 0.00 5.18
747 750 0.318762 AAGACTTCACCGTCTCCTGC 59.681 55.000 0.00 0.00 43.14 4.85
748 751 1.937108 GCAAGACTTCACCGTCTCCTG 60.937 57.143 0.00 0.00 43.14 3.86
749 752 0.318762 GCAAGACTTCACCGTCTCCT 59.681 55.000 0.00 0.00 43.14 3.69
750 753 1.009389 CGCAAGACTTCACCGTCTCC 61.009 60.000 0.00 0.00 43.14 3.71
751 754 1.009389 CCGCAAGACTTCACCGTCTC 61.009 60.000 0.00 0.00 43.14 3.36
752 755 1.006102 CCGCAAGACTTCACCGTCT 60.006 57.895 0.00 0.00 45.73 4.18
753 756 1.006571 TCCGCAAGACTTCACCGTC 60.007 57.895 0.00 0.00 43.02 4.79
754 757 1.006102 CTCCGCAAGACTTCACCGT 60.006 57.895 0.00 0.00 43.02 4.83
755 758 1.738099 CCTCCGCAAGACTTCACCG 60.738 63.158 0.00 0.00 43.02 4.94
756 759 0.390472 CTCCTCCGCAAGACTTCACC 60.390 60.000 0.00 0.00 43.02 4.02
757 760 0.390472 CCTCCTCCGCAAGACTTCAC 60.390 60.000 0.00 0.00 43.02 3.18
758 761 0.541998 TCCTCCTCCGCAAGACTTCA 60.542 55.000 0.00 0.00 43.02 3.02
759 762 0.108567 GTCCTCCTCCGCAAGACTTC 60.109 60.000 0.00 0.00 43.02 3.01
760 763 1.878656 CGTCCTCCTCCGCAAGACTT 61.879 60.000 0.00 0.00 43.02 3.01
761 764 2.344203 CGTCCTCCTCCGCAAGACT 61.344 63.158 0.00 0.00 43.02 3.24
762 765 2.182030 CGTCCTCCTCCGCAAGAC 59.818 66.667 0.00 0.00 43.02 3.01
763 766 3.068691 CCGTCCTCCTCCGCAAGA 61.069 66.667 0.00 0.00 43.02 3.02
764 767 4.821589 GCCGTCCTCCTCCGCAAG 62.822 72.222 0.00 0.00 0.00 4.01
767 770 4.821589 CTTGCCGTCCTCCTCCGC 62.822 72.222 0.00 0.00 0.00 5.54
768 771 4.148825 CCTTGCCGTCCTCCTCCG 62.149 72.222 0.00 0.00 0.00 4.63
769 772 3.787001 CCCTTGCCGTCCTCCTCC 61.787 72.222 0.00 0.00 0.00 4.30
770 773 4.475135 GCCCTTGCCGTCCTCCTC 62.475 72.222 0.00 0.00 0.00 3.71
779 782 4.785453 CCTCCTCACGCCCTTGCC 62.785 72.222 0.00 0.00 0.00 4.52
780 783 3.672295 CTCCTCCTCACGCCCTTGC 62.672 68.421 0.00 0.00 0.00 4.01
781 784 2.581354 CTCCTCCTCACGCCCTTG 59.419 66.667 0.00 0.00 0.00 3.61
782 785 2.685380 CCTCCTCCTCACGCCCTT 60.685 66.667 0.00 0.00 0.00 3.95
783 786 3.239627 TTCCTCCTCCTCACGCCCT 62.240 63.158 0.00 0.00 0.00 5.19
784 787 2.683933 TTCCTCCTCCTCACGCCC 60.684 66.667 0.00 0.00 0.00 6.13
785 788 1.950973 GACTTCCTCCTCCTCACGCC 61.951 65.000 0.00 0.00 0.00 5.68
786 789 1.251527 TGACTTCCTCCTCCTCACGC 61.252 60.000 0.00 0.00 0.00 5.34
787 790 1.407258 GATGACTTCCTCCTCCTCACG 59.593 57.143 0.00 0.00 0.00 4.35
788 791 1.407258 CGATGACTTCCTCCTCCTCAC 59.593 57.143 0.00 0.00 0.00 3.51
789 792 1.769026 CGATGACTTCCTCCTCCTCA 58.231 55.000 0.00 0.00 0.00 3.86
790 793 0.387565 GCGATGACTTCCTCCTCCTC 59.612 60.000 0.00 0.00 0.00 3.71
791 794 1.045911 GGCGATGACTTCCTCCTCCT 61.046 60.000 0.00 0.00 0.00 3.69
792 795 1.443828 GGCGATGACTTCCTCCTCC 59.556 63.158 0.00 0.00 0.00 4.30
793 796 1.066587 CGGCGATGACTTCCTCCTC 59.933 63.158 0.00 0.00 0.00 3.71
794 797 2.427245 CCGGCGATGACTTCCTCCT 61.427 63.158 9.30 0.00 0.00 3.69
795 798 2.107141 CCGGCGATGACTTCCTCC 59.893 66.667 9.30 0.00 0.00 4.30
796 799 2.107141 CCCGGCGATGACTTCCTC 59.893 66.667 9.30 0.00 0.00 3.71
797 800 2.363795 TCCCGGCGATGACTTCCT 60.364 61.111 9.30 0.00 0.00 3.36
798 801 2.107141 CTCCCGGCGATGACTTCC 59.893 66.667 9.30 0.00 0.00 3.46
799 802 2.107141 CCTCCCGGCGATGACTTC 59.893 66.667 9.30 0.00 0.00 3.01
823 826 2.437002 TATTTGCCCCACGCCGAC 60.437 61.111 0.00 0.00 36.24 4.79
824 827 2.124901 CTATTTGCCCCACGCCGA 60.125 61.111 0.00 0.00 36.24 5.54
825 828 3.887868 GCTATTTGCCCCACGCCG 61.888 66.667 0.00 0.00 36.24 6.46
826 829 2.440247 AGCTATTTGCCCCACGCC 60.440 61.111 0.00 0.00 44.23 5.68
827 830 2.481471 GGAGCTATTTGCCCCACGC 61.481 63.158 0.00 0.00 39.61 5.34
828 831 1.823899 GGGAGCTATTTGCCCCACG 60.824 63.158 10.27 0.00 45.59 4.94
829 832 4.259952 GGGAGCTATTTGCCCCAC 57.740 61.111 10.27 0.00 45.59 4.61
831 834 1.466851 GCATGGGAGCTATTTGCCCC 61.467 60.000 5.02 1.99 46.10 5.80
861 864 4.751600 TGTCACATGAGAGACAATTCACAC 59.248 41.667 14.67 0.00 41.40 3.82
862 865 4.959723 TGTCACATGAGAGACAATTCACA 58.040 39.130 14.67 0.00 41.40 3.58
863 866 6.072838 ACAATGTCACATGAGAGACAATTCAC 60.073 38.462 18.78 0.00 46.01 3.18
880 883 2.030363 GCCATTTGAACCGACAATGTCA 60.030 45.455 14.24 0.00 32.09 3.58
886 889 1.071542 TGAGAGCCATTTGAACCGACA 59.928 47.619 0.00 0.00 0.00 4.35
889 892 1.202222 GCATGAGAGCCATTTGAACCG 60.202 52.381 0.00 0.00 31.94 4.44
947 951 6.374417 ACATGTGTCTTTGGATTAGGTAGT 57.626 37.500 0.00 0.00 0.00 2.73
950 954 8.472007 TTTAAACATGTGTCTTTGGATTAGGT 57.528 30.769 0.00 0.00 0.00 3.08
1016 1020 3.066342 CCAATGCTGAGCTGGATAAGTTG 59.934 47.826 6.89 0.00 31.38 3.16
1531 1536 3.065306 CTTCAGGGGTGCGGTACA 58.935 61.111 0.00 0.00 0.00 2.90
1562 1567 0.313672 GTTGCCATTCTTGCCGTTCA 59.686 50.000 0.00 0.00 0.00 3.18
1565 1570 0.827507 AAGGTTGCCATTCTTGCCGT 60.828 50.000 0.00 0.00 0.00 5.68
1568 1573 0.037046 CCCAAGGTTGCCATTCTTGC 60.037 55.000 0.00 0.00 37.24 4.01
1606 1611 0.959372 CCCTGCTCTGGTTTGCTCTG 60.959 60.000 0.00 0.00 0.00 3.35
1809 1833 2.618045 CCAACGGTAAATCAAGCTCCCT 60.618 50.000 0.00 0.00 0.00 4.20
1817 1841 0.391927 CCGCCTCCAACGGTAAATCA 60.392 55.000 0.00 0.00 45.70 2.57
1914 1941 0.680921 CCCACAGTAGCACCAATGGG 60.681 60.000 3.55 1.45 40.87 4.00
2000 2053 1.279846 CCCATCAAATTGCCCTGCTTT 59.720 47.619 0.00 0.00 0.00 3.51
2088 2141 9.911788 AAATGATGTCCAATCTATTCACTTACT 57.088 29.630 0.00 0.00 0.00 2.24
2204 2258 5.707242 ACTGATGACGAACTGAAGAACTA 57.293 39.130 0.00 0.00 0.00 2.24
2263 2323 1.141053 GGGCGACTATGGATGAACCTT 59.859 52.381 0.00 0.00 39.86 3.50
2264 2324 0.759346 GGGCGACTATGGATGAACCT 59.241 55.000 0.00 0.00 39.86 3.50
2337 2397 5.574188 AGCTTCACTTCTTTATGAATGGGT 58.426 37.500 0.00 0.00 34.43 4.51
2380 2513 6.759497 AGATATATCGATGTCAATGACCGA 57.241 37.500 14.93 14.93 0.00 4.69
2511 2654 1.755395 CACGGGACCCTACCATCGA 60.755 63.158 9.41 0.00 0.00 3.59
2549 2692 4.931914 AGACTGCTAACTAGAACCTACCA 58.068 43.478 0.00 0.00 0.00 3.25
2664 2808 7.274686 ACGAGTAAAAACTTTGAAAACACCATG 59.725 33.333 0.00 0.00 0.00 3.66
2761 2907 2.553247 GGGGATGCCCTCTATTGTAAGC 60.553 54.545 16.52 0.00 44.66 3.09
2769 2915 2.124411 GTTGTAAGGGGATGCCCTCTA 58.876 52.381 27.15 16.47 44.36 2.43
2833 2983 9.461312 TCCTATCATAAAAGTTGTTGTTAGCAT 57.539 29.630 0.00 0.00 0.00 3.79
2929 3083 9.400638 CCTCTGTCGTTCTATCTATTAATGTTC 57.599 37.037 0.00 0.00 0.00 3.18
2945 3099 2.579201 CGATGCCCCTCTGTCGTT 59.421 61.111 0.00 0.00 0.00 3.85
2950 3104 2.808206 GGTACCCGATGCCCCTCTG 61.808 68.421 0.00 0.00 0.00 3.35
3114 3269 3.064134 TCGAGTGCGAGTCTTTCTATCTG 59.936 47.826 0.00 0.00 42.51 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.