Multiple sequence alignment - TraesCS1A01G033800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G033800 chr1A 100.000 6508 0 0 1 6508 16431376 16437883 0.000000e+00 12019
1 TraesCS1A01G033800 chr1B 88.661 3457 247 59 890 4309 22025817 22022469 0.000000e+00 4078
2 TraesCS1A01G033800 chr1B 90.490 1388 85 17 4316 5657 22022509 22021123 0.000000e+00 1788
3 TraesCS1A01G033800 chr1B 87.187 999 86 18 1 976 22039539 22038560 0.000000e+00 1098
4 TraesCS1A01G033800 chr1B 84.562 868 81 22 4306 5122 22901718 22902583 0.000000e+00 811
5 TraesCS1A01G033800 chr1B 85.670 642 54 19 5768 6394 22874748 22875366 5.500000e-180 641
6 TraesCS1A01G033800 chr1B 87.002 577 40 16 5768 6331 22867679 22868233 9.270000e-173 617
7 TraesCS1A01G033800 chr1B 86.828 577 41 16 5768 6331 22866265 22866819 4.310000e-171 612
8 TraesCS1A01G033800 chr1B 86.828 577 41 16 5768 6331 22870507 22871061 4.310000e-171 612
9 TraesCS1A01G033800 chr1B 86.828 577 41 16 5768 6331 22873334 22873888 4.310000e-171 612
10 TraesCS1A01G033800 chr1B 86.655 577 42 16 5768 6331 22871920 22872474 2.010000e-169 606
11 TraesCS1A01G033800 chr1B 86.482 577 43 16 5768 6331 22869093 22869647 9.340000e-168 601
12 TraesCS1A01G033800 chr1B 84.639 638 52 23 5768 6398 22021015 22020417 1.560000e-165 593
13 TraesCS1A01G033800 chr1B 87.583 451 36 14 5950 6394 24141493 24141929 7.530000e-139 505
14 TraesCS1A01G033800 chr1B 87.683 341 36 3 5323 5657 22865817 22866157 6.120000e-105 392
15 TraesCS1A01G033800 chr1B 87.427 342 36 3 5323 5657 22868644 22868985 2.850000e-103 387
16 TraesCS1A01G033800 chr1B 87.427 342 36 3 5323 5657 22872885 22873226 2.850000e-103 387
17 TraesCS1A01G033800 chr1B 87.135 342 37 3 5323 5657 22870058 22870399 1.320000e-101 381
18 TraesCS1A01G033800 chr1B 86.550 342 39 3 5323 5657 22867230 22867571 2.870000e-98 370
19 TraesCS1A01G033800 chr1B 79.598 348 55 8 85 430 22027126 22026793 1.090000e-57 235
20 TraesCS1A01G033800 chr1B 86.364 198 27 0 4020 4217 22901491 22901688 3.950000e-52 217
21 TraesCS1A01G033800 chr1D 91.978 2169 118 24 1582 3736 15359938 15362064 0.000000e+00 2990
22 TraesCS1A01G033800 chr1D 91.687 1612 94 17 1 1584 15358296 15359895 0.000000e+00 2198
23 TraesCS1A01G033800 chr1D 91.251 1383 78 16 4316 5657 15362677 15364057 0.000000e+00 1844
24 TraesCS1A01G033800 chr1D 88.595 491 26 10 1118 1584 368917961 368918445 2.630000e-158 569
25 TraesCS1A01G033800 chr1D 89.163 406 29 9 1582 1979 428762802 428763200 5.860000e-135 492
26 TraesCS1A01G033800 chr1D 88.916 406 30 9 1582 1979 394220406 394220008 2.730000e-133 486
27 TraesCS1A01G033800 chr1D 88.670 406 31 11 1582 1979 368918488 368918886 1.270000e-131 481
28 TraesCS1A01G033800 chr1D 88.177 406 33 11 1582 1979 266859812 266859414 2.750000e-128 470
29 TraesCS1A01G033800 chr1D 87.079 356 20 8 825 1177 15345406 15345738 4.760000e-101 379
30 TraesCS1A01G033800 chr1D 95.197 229 10 1 1356 1584 42320022 42320249 1.730000e-95 361
31 TraesCS1A01G033800 chr1D 95.197 229 10 1 1356 1584 428762532 428762759 1.730000e-95 361
32 TraesCS1A01G033800 chr1D 79.304 546 65 18 3780 4309 15362204 15362717 8.080000e-89 339
33 TraesCS1A01G033800 chr1D 89.412 255 26 1 672 926 15345126 15345379 2.930000e-83 320
34 TraesCS1A01G033800 chr1D 79.358 436 67 15 1 430 15344036 15344454 1.070000e-72 285
35 TraesCS1A01G033800 chr1D 87.558 217 16 4 5768 5984 15364166 15364371 2.340000e-59 241
36 TraesCS1A01G033800 chr4B 84.073 992 97 30 936 1903 219355328 219354374 0.000000e+00 900
37 TraesCS1A01G033800 chr6D 89.113 496 23 9 1114 1584 55252089 55251600 7.270000e-164 588
38 TraesCS1A01G033800 chr6D 88.577 499 23 9 1114 1584 335167608 335167116 5.660000e-160 575
39 TraesCS1A01G033800 chr6D 89.409 406 28 9 1582 1979 55251557 55251159 1.260000e-136 497
40 TraesCS1A01G033800 chr3D 88.281 512 31 10 1096 1584 8767202 8766697 2.610000e-163 586
41 TraesCS1A01G033800 chr3D 88.916 406 30 9 1582 1979 490680787 490680389 2.730000e-133 486
42 TraesCS1A01G033800 chr3D 86.029 136 19 0 3462 3597 611146542 611146407 5.260000e-31 147
43 TraesCS1A01G033800 chr4D 87.500 496 31 10 1114 1584 272818863 272818374 1.600000e-150 544
44 TraesCS1A01G033800 chr4D 88.916 406 30 9 1582 1979 272818331 272817933 2.730000e-133 486
45 TraesCS1A01G033800 chr7D 89.409 406 27 12 1582 1979 429092406 429092803 1.260000e-136 497
46 TraesCS1A01G033800 chr2D 89.409 406 28 9 1582 1979 465781807 465781409 1.260000e-136 497
47 TraesCS1A01G033800 chrUn 88.471 399 27 12 5940 6331 398485183 398484797 1.280000e-126 464
48 TraesCS1A01G033800 chrUn 87.427 342 36 3 5323 5657 407306469 407306810 2.850000e-103 387
49 TraesCS1A01G033800 chrUn 87.135 342 37 3 5323 5657 398484386 398484045 1.320000e-101 381
50 TraesCS1A01G033800 chr3A 89.744 78 8 0 2666 2743 746055280 746055203 4.150000e-17 100


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G033800 chr1A 16431376 16437883 6507 False 12019.000000 12019 100.00000 1 6508 1 chr1A.!!$F1 6507
1 TraesCS1A01G033800 chr1B 22020417 22027126 6709 True 1673.500000 4078 85.84700 85 6398 4 chr1B.!!$R2 6313
2 TraesCS1A01G033800 chr1B 22038560 22039539 979 True 1098.000000 1098 87.18700 1 976 1 chr1B.!!$R1 975
3 TraesCS1A01G033800 chr1B 22865817 22875366 9549 False 518.166667 641 86.87625 5323 6394 12 chr1B.!!$F2 1071
4 TraesCS1A01G033800 chr1B 22901491 22902583 1092 False 514.000000 811 85.46300 4020 5122 2 chr1B.!!$F3 1102
5 TraesCS1A01G033800 chr1D 15358296 15364371 6075 False 1522.400000 2990 88.35560 1 5984 5 chr1D.!!$F3 5983
6 TraesCS1A01G033800 chr1D 368917961 368918886 925 False 525.000000 569 88.63250 1118 1979 2 chr1D.!!$F4 861
7 TraesCS1A01G033800 chr1D 428762532 428763200 668 False 426.500000 492 92.18000 1356 1979 2 chr1D.!!$F5 623
8 TraesCS1A01G033800 chr1D 15344036 15345738 1702 False 328.000000 379 85.28300 1 1177 3 chr1D.!!$F2 1176
9 TraesCS1A01G033800 chr4B 219354374 219355328 954 True 900.000000 900 84.07300 936 1903 1 chr4B.!!$R1 967
10 TraesCS1A01G033800 chr6D 55251159 55252089 930 True 542.500000 588 89.26100 1114 1979 2 chr6D.!!$R2 865
11 TraesCS1A01G033800 chr3D 8766697 8767202 505 True 586.000000 586 88.28100 1096 1584 1 chr3D.!!$R1 488
12 TraesCS1A01G033800 chr4D 272817933 272818863 930 True 515.000000 544 88.20800 1114 1979 2 chr4D.!!$R1 865
13 TraesCS1A01G033800 chrUn 398484045 398485183 1138 True 422.500000 464 87.80300 5323 6331 2 chrUn.!!$R1 1008

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
600 1136 0.928908 CTCACGGCTATACGCGACAC 60.929 60.000 15.93 0.0 40.44 3.67 F
1417 2330 2.022195 GATGATGCAGTGTGCTTGGAT 58.978 47.619 0.00 0.0 45.31 3.41 F
2203 3185 1.750206 TGATGTGCAATGCCGCTAATT 59.250 42.857 1.53 0.0 0.00 1.40 F
3183 4166 1.143684 AGGAGTGATTTGTGGCACTGT 59.856 47.619 19.83 4.4 44.77 3.55 F
4218 5342 0.039798 TCTACAGTGACGTTGTCCGC 60.040 55.000 0.00 0.0 41.42 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1462 2375 0.390124 GGATGAGCCAGCTCTGAGAG 59.610 60.0 19.71 4.80 43.12 3.20 R
2889 3871 0.106819 GCATGTCTGAGCCCCTTCAT 60.107 55.0 0.00 0.00 0.00 2.57 R
3769 4877 0.393077 ACGTTTGGAGTGTGCTAGCT 59.607 50.0 17.23 0.00 0.00 3.32 R
4380 5510 0.413832 AGAGACTAACCTGGCCTGGA 59.586 55.0 33.43 12.58 0.00 3.86 R
6200 14530 0.252375 TTGGCCCTAGGTACGAAGGT 60.252 55.0 8.29 0.00 35.10 3.50 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.159254 ACTAGACATTGGACCTGAATTGATATA 57.841 33.333 0.00 0.00 0.00 0.86
67 71 1.444933 ACTTCATTGAGGGGTGGTGA 58.555 50.000 0.55 0.00 0.00 4.02
129 135 8.771920 TTATGGCAATATCGAACTACATAAGG 57.228 34.615 0.00 0.00 0.00 2.69
134 140 6.402550 GCAATATCGAACTACATAAGGGCATG 60.403 42.308 0.00 0.00 0.00 4.06
300 308 7.044798 GGTAGAGCTCAATTGTTTGTAGATCT 58.955 38.462 17.77 14.10 38.32 2.75
358 368 7.925043 TCTATTAGACTCGGATGAGATTACC 57.075 40.000 0.00 0.00 45.57 2.85
375 385 8.469200 TGAGATTACCTTTTGATGCTATTTTGG 58.531 33.333 0.00 0.00 0.00 3.28
379 389 5.086621 ACCTTTTGATGCTATTTTGGACCT 58.913 37.500 0.00 0.00 0.00 3.85
411 421 5.905331 TCCTAGGATTTAGAAGCATCAGGAA 59.095 40.000 7.62 0.00 0.00 3.36
422 432 6.064717 AGAAGCATCAGGAATTATAACCACC 58.935 40.000 0.00 0.00 0.00 4.61
444 897 4.686554 CCGAAGACTCTAGTTGAACTTTGG 59.313 45.833 1.97 0.00 36.89 3.28
589 1125 3.909086 GAAAGGCCTGCTCACGGCT 62.909 63.158 5.69 0.00 46.73 5.52
590 1126 2.521958 GAAAGGCCTGCTCACGGCTA 62.522 60.000 5.69 0.00 46.73 3.93
591 1127 1.915078 AAAGGCCTGCTCACGGCTAT 61.915 55.000 5.69 0.00 46.73 2.97
592 1128 1.048724 AAGGCCTGCTCACGGCTATA 61.049 55.000 5.69 0.00 46.73 1.31
593 1129 1.301009 GGCCTGCTCACGGCTATAC 60.301 63.158 0.00 0.00 46.73 1.47
594 1130 1.661821 GCCTGCTCACGGCTATACG 60.662 63.158 0.00 0.00 44.17 3.06
595 1131 1.661821 CCTGCTCACGGCTATACGC 60.662 63.158 0.00 0.00 42.39 4.42
596 1132 2.011349 CTGCTCACGGCTATACGCG 61.011 63.158 3.53 3.53 42.39 6.01
597 1133 2.330393 GCTCACGGCTATACGCGA 59.670 61.111 15.93 0.00 40.44 5.87
598 1134 2.009755 GCTCACGGCTATACGCGAC 61.010 63.158 15.93 0.00 40.44 5.19
599 1135 1.354155 CTCACGGCTATACGCGACA 59.646 57.895 15.93 0.00 40.44 4.35
600 1136 0.928908 CTCACGGCTATACGCGACAC 60.929 60.000 15.93 0.00 40.44 3.67
692 1229 3.343941 TTTAGAATGGTCCGGTTCCAG 57.656 47.619 21.17 0.00 38.42 3.86
746 1283 3.871485 ACAAAACATTTGCCAAGCTTGA 58.129 36.364 28.05 8.10 0.00 3.02
753 1290 4.768968 ACATTTGCCAAGCTTGACTATCTT 59.231 37.500 28.05 4.20 0.00 2.40
839 1377 9.313118 CCCATTGCTAGTTACCAAAATTAAATC 57.687 33.333 0.00 0.00 0.00 2.17
856 1394 8.931385 AATTAAATCATCGACCATTTTGGAAG 57.069 30.769 8.33 0.00 40.96 3.46
886 1555 4.994217 AGTTTTTGCCACGAAATTAATGGG 59.006 37.500 0.00 0.00 33.81 4.00
910 1770 6.870439 GGCATAAATCATTTAGCAGGATTTCC 59.130 38.462 11.38 0.00 40.58 3.13
1262 2175 2.748209 CCCCCTTCCGTTTCCATTAT 57.252 50.000 0.00 0.00 0.00 1.28
1301 2214 2.202401 GCAACGCTGCTTGCTAGC 60.202 61.111 21.41 13.56 45.74 3.42
1313 2226 3.440228 GCTTGCTAGCAGTACTGTACTC 58.560 50.000 23.44 12.07 46.95 2.59
1314 2227 3.119459 GCTTGCTAGCAGTACTGTACTCA 60.119 47.826 23.44 13.73 46.95 3.41
1315 2228 4.667262 CTTGCTAGCAGTACTGTACTCAG 58.333 47.826 23.44 14.61 46.18 3.35
1317 2230 2.685897 GCTAGCAGTACTGTACTCAGCT 59.314 50.000 26.15 26.15 44.77 4.24
1318 2231 3.242936 GCTAGCAGTACTGTACTCAGCTC 60.243 52.174 26.50 15.29 44.77 4.09
1319 2232 3.080300 AGCAGTACTGTACTCAGCTCT 57.920 47.619 23.44 6.41 44.77 4.09
1336 2249 2.615869 CTCTTAGTCTGCTGGTGCTTC 58.384 52.381 0.00 0.00 40.48 3.86
1353 2266 2.481952 GCTTCTCGTGCTTGACTGAATT 59.518 45.455 0.00 0.00 0.00 2.17
1354 2267 3.058639 GCTTCTCGTGCTTGACTGAATTT 60.059 43.478 0.00 0.00 0.00 1.82
1389 2302 7.169813 GGTTTGAGTGTGATTTCTGAAATTTCC 59.830 37.037 16.14 8.38 0.00 3.13
1417 2330 2.022195 GATGATGCAGTGTGCTTGGAT 58.978 47.619 0.00 0.00 45.31 3.41
1462 2375 3.775654 CGAGGGTCAGGGAGTGGC 61.776 72.222 0.00 0.00 0.00 5.01
1541 2454 7.439157 TGATACAGAACCATGAGTTTTCTTG 57.561 36.000 0.00 0.00 39.40 3.02
1732 2695 9.031537 TGGGTACATACATCATTAGTGTATAGG 57.968 37.037 0.00 0.00 39.95 2.57
1738 2701 9.809096 CATACATCATTAGTGTATAGGGATGTC 57.191 37.037 7.55 0.00 41.88 3.06
1754 2717 4.442706 GGATGTCACTTTCGTGTGGATAT 58.557 43.478 0.00 0.00 41.89 1.63
1838 2804 6.052840 ACTATCACTTGCTAATTTGATGCG 57.947 37.500 0.00 0.00 31.20 4.73
2017 2983 2.002586 CTTCACGCCAGAAATCGATGT 58.997 47.619 0.00 0.00 0.00 3.06
2144 3126 2.820178 AGGCCTAACCCCATTTTTGAG 58.180 47.619 1.29 0.00 40.58 3.02
2195 3177 8.188531 AGTTACATTTTATTGATGTGCAATGC 57.811 30.769 0.00 0.00 46.38 3.56
2203 3185 1.750206 TGATGTGCAATGCCGCTAATT 59.250 42.857 1.53 0.00 0.00 1.40
2282 3264 2.719739 CAGCACCAAGTCCTCATTGAT 58.280 47.619 0.00 0.00 0.00 2.57
2388 3370 9.727859 TTTAACTATCATGTTTGTACCTAGCAA 57.272 29.630 0.00 0.00 0.00 3.91
2395 3377 6.264292 TCATGTTTGTACCTAGCAATGTGTTT 59.736 34.615 0.00 0.00 0.00 2.83
2489 3471 6.111382 TGACCTGATGATCTCTGTTTCATTC 58.889 40.000 0.00 0.00 32.84 2.67
2542 3524 5.528600 TGGGACCTTATGGAATTTCTCAA 57.471 39.130 0.81 0.00 37.04 3.02
2713 3695 7.437713 AGTGAAGATAAGGTATTGTGATGGA 57.562 36.000 0.00 0.00 0.00 3.41
2734 3716 3.157087 AGCATCATTTTCTGGGAACGTT 58.843 40.909 0.00 0.00 0.00 3.99
2773 3755 5.185828 GGTCTTCTTTGCCTATTTCCAACAT 59.814 40.000 0.00 0.00 0.00 2.71
2792 3774 7.774625 TCCAACATATGCTGATTAATCACTCAA 59.225 33.333 14.23 1.68 32.50 3.02
2793 3775 7.859377 CCAACATATGCTGATTAATCACTCAAC 59.141 37.037 14.23 3.02 32.50 3.18
2828 3810 9.248291 TGAGAATTTTGTTATTCTTTGCAGAAC 57.752 29.630 0.00 0.00 43.18 3.01
2847 3829 5.290643 CAGAACGGCACAAAATTCTTTTTCA 59.709 36.000 0.00 0.00 32.72 2.69
2889 3871 6.823689 GGAAGCAGTTATGGATGAACTTCTAA 59.176 38.462 0.00 0.00 34.90 2.10
2934 3916 2.034939 CAGGTCATTCTTGCAAGCACAA 59.965 45.455 21.99 11.40 0.00 3.33
2937 3919 2.030371 TCATTCTTGCAAGCACAACCA 58.970 42.857 21.99 0.00 0.00 3.67
2942 3924 1.342174 CTTGCAAGCACAACCATTCCT 59.658 47.619 14.65 0.00 0.00 3.36
2945 3927 2.224018 TGCAAGCACAACCATTCCTTTC 60.224 45.455 0.00 0.00 0.00 2.62
2953 3935 5.772521 CACAACCATTCCTTTCGATTTTCT 58.227 37.500 0.00 0.00 0.00 2.52
2957 3939 5.772521 ACCATTCCTTTCGATTTTCTTGTG 58.227 37.500 0.00 0.00 0.00 3.33
2960 3942 6.350445 CCATTCCTTTCGATTTTCTTGTGGAT 60.350 38.462 0.00 0.00 0.00 3.41
2961 3943 5.627499 TCCTTTCGATTTTCTTGTGGATG 57.373 39.130 0.00 0.00 0.00 3.51
3020 4003 7.992754 AAGATGTAAATCTGTTTCTTGCTCT 57.007 32.000 0.00 0.00 0.00 4.09
3021 4004 7.992754 AGATGTAAATCTGTTTCTTGCTCTT 57.007 32.000 0.00 0.00 0.00 2.85
3022 4005 9.507329 AAGATGTAAATCTGTTTCTTGCTCTTA 57.493 29.630 0.00 0.00 0.00 2.10
3023 4006 9.507329 AGATGTAAATCTGTTTCTTGCTCTTAA 57.493 29.630 0.00 0.00 0.00 1.85
3026 4009 8.514594 TGTAAATCTGTTTCTTGCTCTTAATGG 58.485 33.333 0.00 0.00 0.00 3.16
3027 4010 7.765695 AAATCTGTTTCTTGCTCTTAATGGA 57.234 32.000 0.00 0.00 0.00 3.41
3028 4011 7.951347 AATCTGTTTCTTGCTCTTAATGGAT 57.049 32.000 0.00 0.00 0.00 3.41
3029 4012 6.992063 TCTGTTTCTTGCTCTTAATGGATC 57.008 37.500 0.00 0.00 0.00 3.36
3030 4013 6.715280 TCTGTTTCTTGCTCTTAATGGATCT 58.285 36.000 0.00 0.00 0.00 2.75
3031 4014 6.596888 TCTGTTTCTTGCTCTTAATGGATCTG 59.403 38.462 0.00 0.00 0.00 2.90
3032 4015 5.124457 TGTTTCTTGCTCTTAATGGATCTGC 59.876 40.000 0.00 0.00 0.00 4.26
3033 4016 3.461061 TCTTGCTCTTAATGGATCTGCG 58.539 45.455 0.00 0.00 0.00 5.18
3034 4017 2.988010 TGCTCTTAATGGATCTGCGT 57.012 45.000 0.00 0.00 0.00 5.24
3035 4018 3.266510 TGCTCTTAATGGATCTGCGTT 57.733 42.857 0.00 0.00 0.00 4.84
3036 4019 3.609853 TGCTCTTAATGGATCTGCGTTT 58.390 40.909 0.00 0.00 0.00 3.60
3037 4020 3.374988 TGCTCTTAATGGATCTGCGTTTG 59.625 43.478 0.00 0.00 0.00 2.93
3038 4021 3.623060 GCTCTTAATGGATCTGCGTTTGA 59.377 43.478 0.00 0.00 0.00 2.69
3039 4022 4.494855 GCTCTTAATGGATCTGCGTTTGAC 60.495 45.833 0.00 0.00 0.00 3.18
3040 4023 4.832248 TCTTAATGGATCTGCGTTTGACT 58.168 39.130 0.00 0.00 0.00 3.41
3041 4024 5.245531 TCTTAATGGATCTGCGTTTGACTT 58.754 37.500 0.00 0.00 0.00 3.01
3042 4025 5.705441 TCTTAATGGATCTGCGTTTGACTTT 59.295 36.000 0.00 0.00 0.00 2.66
3043 4026 6.876789 TCTTAATGGATCTGCGTTTGACTTTA 59.123 34.615 0.00 0.00 0.00 1.85
3044 4027 5.551760 AATGGATCTGCGTTTGACTTTAG 57.448 39.130 0.00 0.00 0.00 1.85
3045 4028 2.742053 TGGATCTGCGTTTGACTTTAGC 59.258 45.455 0.00 0.00 0.00 3.09
3046 4029 2.742053 GGATCTGCGTTTGACTTTAGCA 59.258 45.455 0.00 0.00 36.34 3.49
3047 4030 3.424962 GGATCTGCGTTTGACTTTAGCAC 60.425 47.826 0.00 0.00 33.92 4.40
3048 4031 1.871039 TCTGCGTTTGACTTTAGCACC 59.129 47.619 0.00 0.00 33.92 5.01
3049 4032 1.873591 CTGCGTTTGACTTTAGCACCT 59.126 47.619 0.00 0.00 33.92 4.00
3052 4035 3.042887 GCGTTTGACTTTAGCACCTTTG 58.957 45.455 0.00 0.00 0.00 2.77
3066 4049 3.694566 GCACCTTTGGGTTAACTGGATAG 59.305 47.826 5.42 0.00 44.73 2.08
3082 4065 5.131142 ACTGGATAGAAGTATGGAAGGTTGG 59.869 44.000 0.00 0.00 0.00 3.77
3086 4069 6.271159 GGATAGAAGTATGGAAGGTTGGATCT 59.729 42.308 0.00 0.00 0.00 2.75
3127 4110 6.366604 TGTGTACCAGTTGATATTGTTGTACG 59.633 38.462 0.00 0.00 32.16 3.67
3128 4111 6.587226 GTGTACCAGTTGATATTGTTGTACGA 59.413 38.462 0.00 0.00 32.16 3.43
3133 4116 8.234546 ACCAGTTGATATTGTTGTACGAAAATC 58.765 33.333 1.45 0.00 0.00 2.17
3138 4121 6.904543 TGATATTGTTGTACGAAAATCATGCG 59.095 34.615 1.45 0.00 0.00 4.73
3140 4123 4.060288 TGTTGTACGAAAATCATGCGTC 57.940 40.909 0.00 0.00 39.24 5.19
3147 4130 5.289917 ACGAAAATCATGCGTCAATGTTA 57.710 34.783 0.00 0.00 31.98 2.41
3149 4132 4.495472 CGAAAATCATGCGTCAATGTTACC 59.505 41.667 0.00 0.00 0.00 2.85
3150 4133 5.384063 AAAATCATGCGTCAATGTTACCA 57.616 34.783 0.00 0.00 0.00 3.25
3155 4138 4.699735 TCATGCGTCAATGTTACCAAGAAT 59.300 37.500 0.00 0.00 0.00 2.40
3183 4166 1.143684 AGGAGTGATTTGTGGCACTGT 59.856 47.619 19.83 4.40 44.77 3.55
3198 4181 8.512966 TGTGGCACTGTTAAATAAATAGCATA 57.487 30.769 19.83 0.00 29.74 3.14
3215 4198 5.981088 AGCATAGATCTACCAGATGTCAG 57.019 43.478 4.10 0.00 34.53 3.51
3235 4218 9.618890 ATGTCAGTGACAGTAATATTGCTTTAT 57.381 29.630 28.54 5.66 46.04 1.40
3389 4372 9.708092 CTGGATATGATCTGATATTCGCATTAT 57.292 33.333 0.00 0.00 0.00 1.28
3396 4379 9.276590 TGATCTGATATTCGCATTATTTTGTCT 57.723 29.630 0.00 0.00 0.00 3.41
3419 4402 3.872511 TGCCCATACAAGCATTTTGAG 57.127 42.857 0.00 0.00 33.08 3.02
3611 4594 6.801539 TGTGTATGTTTTCAGATCACCTTC 57.198 37.500 0.00 0.00 32.31 3.46
3705 4688 8.164058 TGTCAGTTTTTCACATACATGAATGA 57.836 30.769 0.00 0.00 38.37 2.57
3727 4710 8.632906 ATGAAATAATTGATGGATGTCCTCTC 57.367 34.615 0.09 0.00 36.82 3.20
3738 4846 7.565029 TGATGGATGTCCTCTCTAATACTCAAA 59.435 37.037 0.09 0.00 36.82 2.69
3744 4852 8.880991 TGTCCTCTCTAATACTCAAAAGTACT 57.119 34.615 0.00 0.00 40.74 2.73
3752 4860 9.371136 TCTAATACTCAAAAGTACTTGCATCTG 57.629 33.333 9.34 2.64 40.74 2.90
3753 4861 7.986085 AATACTCAAAAGTACTTGCATCTGT 57.014 32.000 9.34 6.67 40.74 3.41
3754 4862 7.986085 ATACTCAAAAGTACTTGCATCTGTT 57.014 32.000 9.34 0.00 40.74 3.16
3758 4866 7.282224 ACTCAAAAGTACTTGCATCTGTTAACA 59.718 33.333 9.34 8.28 32.59 2.41
3761 4869 8.905702 CAAAAGTACTTGCATCTGTTAACATTC 58.094 33.333 9.34 0.00 0.00 2.67
3765 4873 8.796475 AGTACTTGCATCTGTTAACATTCAAAT 58.204 29.630 9.13 4.07 0.00 2.32
3766 4874 7.878477 ACTTGCATCTGTTAACATTCAAATG 57.122 32.000 9.13 9.13 42.10 2.32
3777 4885 4.691860 ACATTCAAATGTCAGCTAGCAC 57.308 40.909 18.83 7.94 46.10 4.40
3778 4886 4.074259 ACATTCAAATGTCAGCTAGCACA 58.926 39.130 18.83 13.98 46.10 4.57
3779 4887 4.083110 ACATTCAAATGTCAGCTAGCACAC 60.083 41.667 18.83 13.06 46.10 3.82
3780 4888 3.407424 TCAAATGTCAGCTAGCACACT 57.593 42.857 18.83 0.00 0.00 3.55
3781 4889 3.329386 TCAAATGTCAGCTAGCACACTC 58.671 45.455 18.83 3.15 0.00 3.51
3782 4890 2.393271 AATGTCAGCTAGCACACTCC 57.607 50.000 18.83 0.00 0.00 3.85
3783 4891 1.269958 ATGTCAGCTAGCACACTCCA 58.730 50.000 18.83 4.82 0.00 3.86
3784 4892 1.047801 TGTCAGCTAGCACACTCCAA 58.952 50.000 18.83 0.00 0.00 3.53
3785 4893 1.416030 TGTCAGCTAGCACACTCCAAA 59.584 47.619 18.83 0.00 0.00 3.28
3786 4894 1.801178 GTCAGCTAGCACACTCCAAAC 59.199 52.381 18.83 0.00 0.00 2.93
3787 4895 0.792640 CAGCTAGCACACTCCAAACG 59.207 55.000 18.83 0.00 0.00 3.60
3788 4896 0.393077 AGCTAGCACACTCCAAACGT 59.607 50.000 18.83 0.00 0.00 3.99
3789 4897 1.202651 AGCTAGCACACTCCAAACGTT 60.203 47.619 18.83 0.00 0.00 3.99
3790 4898 2.036733 AGCTAGCACACTCCAAACGTTA 59.963 45.455 18.83 0.00 0.00 3.18
3791 4899 2.803956 GCTAGCACACTCCAAACGTTAA 59.196 45.455 10.63 0.00 0.00 2.01
3792 4900 3.120649 GCTAGCACACTCCAAACGTTAAG 60.121 47.826 10.63 2.31 0.00 1.85
3796 4904 3.617669 CACACTCCAAACGTTAAGCAAG 58.382 45.455 0.00 0.00 0.00 4.01
3826 4946 8.677148 TGAGCATAAAGACTTTGAAAGTACTT 57.323 30.769 11.01 12.47 43.03 2.24
3827 4947 8.559536 TGAGCATAAAGACTTTGAAAGTACTTG 58.440 33.333 11.01 6.16 43.03 3.16
3842 4962 9.187455 TGAAAGTACTTGAAAAACAAAACTGAC 57.813 29.630 9.34 0.00 38.08 3.51
3843 4963 9.406828 GAAAGTACTTGAAAAACAAAACTGACT 57.593 29.630 9.34 0.00 38.08 3.41
3891 5013 4.476297 TCATCAAATGAATCATCCCTGGG 58.524 43.478 6.33 6.33 36.11 4.45
3893 5015 3.634504 TCAAATGAATCATCCCTGGGTG 58.365 45.455 13.56 10.56 0.00 4.61
3896 5018 4.335735 AATGAATCATCCCTGGGTGAAA 57.664 40.909 13.56 6.84 0.00 2.69
3897 5019 3.370840 TGAATCATCCCTGGGTGAAAG 57.629 47.619 13.56 0.00 0.00 2.62
3905 5027 1.352083 CCTGGGTGAAAGAGAGGTGA 58.648 55.000 0.00 0.00 0.00 4.02
3906 5028 1.002544 CCTGGGTGAAAGAGAGGTGAC 59.997 57.143 0.00 0.00 0.00 3.67
3911 5033 1.728971 GTGAAAGAGAGGTGACGCATG 59.271 52.381 0.00 0.00 0.00 4.06
3924 5046 2.877691 GCATGGGCCGTGTTTCTC 59.122 61.111 25.85 6.09 0.00 2.87
3927 5049 0.888736 CATGGGCCGTGTTTCTCACA 60.889 55.000 17.89 0.00 46.44 3.58
3954 5076 6.259550 ACTAGTTCATTTTGAGACATTGCC 57.740 37.500 0.00 0.00 0.00 4.52
3968 5090 2.677524 TGCCCATCAGCAAGCACC 60.678 61.111 0.00 0.00 40.56 5.01
3969 5091 2.677524 GCCCATCAGCAAGCACCA 60.678 61.111 0.00 0.00 0.00 4.17
3970 5092 2.277591 GCCCATCAGCAAGCACCAA 61.278 57.895 0.00 0.00 0.00 3.67
3971 5093 1.888018 CCCATCAGCAAGCACCAAG 59.112 57.895 0.00 0.00 0.00 3.61
3972 5094 1.214589 CCATCAGCAAGCACCAAGC 59.785 57.895 0.00 0.00 46.19 4.01
3990 5112 4.802039 CCAAGCAGAAACATTGCATGTATC 59.198 41.667 0.00 0.00 44.07 2.24
3999 5121 6.509418 AACATTGCATGTATCCGTAAGTTT 57.491 33.333 0.00 0.00 44.07 2.66
4007 5129 8.252417 TGCATGTATCCGTAAGTTTAACTCTTA 58.748 33.333 0.00 0.00 0.00 2.10
4021 5143 8.877195 AGTTTAACTCTTATTGTAGGTCAGGAA 58.123 33.333 0.00 0.00 0.00 3.36
4042 5164 8.756927 CAGGAATGAGAAAGCATCTATATCCTA 58.243 37.037 14.02 0.00 39.49 2.94
4054 5176 7.125507 AGCATCTATATCCTATTCTCCTTGTGG 59.874 40.741 0.00 0.00 0.00 4.17
4060 5182 5.677319 TCCTATTCTCCTTGTGGTGTTAG 57.323 43.478 0.00 0.00 34.23 2.34
4073 5195 3.126343 GTGGTGTTAGTCCTTTTATGCCG 59.874 47.826 0.00 0.00 0.00 5.69
4090 5212 8.789825 TTTATGCCGTAAAGGAAAACTGTATA 57.210 30.769 0.00 0.00 45.00 1.47
4098 5220 7.707035 CGTAAAGGAAAACTGTATAGAGCAGAT 59.293 37.037 0.00 0.00 37.40 2.90
4118 5240 1.608055 ATTGTGCTGCTGTGCTGTTA 58.392 45.000 0.00 0.00 0.00 2.41
4138 5260 7.396055 GCTGTTATCCTCAGATTCTATCTACCT 59.604 40.741 0.00 0.00 37.58 3.08
4218 5342 0.039798 TCTACAGTGACGTTGTCCGC 60.040 55.000 0.00 0.00 41.42 5.54
4238 5365 2.616765 GCCTTCAGGTCCTTTTCTCCTC 60.617 54.545 0.00 0.00 37.57 3.71
4239 5366 2.354203 CCTTCAGGTCCTTTTCTCCTCG 60.354 54.545 0.00 0.00 0.00 4.63
4246 5373 4.081365 AGGTCCTTTTCTCCTCGAAGAATC 60.081 45.833 0.53 0.00 35.30 2.52
4251 5378 5.580297 CCTTTTCTCCTCGAAGAATCTTCAG 59.420 44.000 21.29 16.26 35.30 3.02
4254 5381 5.730296 TCTCCTCGAAGAATCTTCAGTTT 57.270 39.130 21.29 0.00 34.09 2.66
4256 5383 4.486090 TCCTCGAAGAATCTTCAGTTTCG 58.514 43.478 21.29 8.42 41.26 3.46
4257 5384 4.217767 TCCTCGAAGAATCTTCAGTTTCGA 59.782 41.667 21.29 12.04 44.87 3.71
4258 5385 4.324936 CCTCGAAGAATCTTCAGTTTCGAC 59.675 45.833 21.29 0.00 43.00 4.20
4259 5386 4.866921 TCGAAGAATCTTCAGTTTCGACA 58.133 39.130 21.29 0.00 43.00 4.35
4260 5387 5.470368 TCGAAGAATCTTCAGTTTCGACAT 58.530 37.500 21.29 0.00 43.00 3.06
4261 5388 5.573282 TCGAAGAATCTTCAGTTTCGACATC 59.427 40.000 21.29 0.00 43.00 3.06
4262 5389 5.220303 CGAAGAATCTTCAGTTTCGACATCC 60.220 44.000 21.29 0.00 42.16 3.51
4263 5390 5.152623 AGAATCTTCAGTTTCGACATCCA 57.847 39.130 0.00 0.00 0.00 3.41
4264 5391 5.551233 AGAATCTTCAGTTTCGACATCCAA 58.449 37.500 0.00 0.00 0.00 3.53
4265 5392 5.997746 AGAATCTTCAGTTTCGACATCCAAA 59.002 36.000 0.00 0.00 0.00 3.28
4266 5393 6.486657 AGAATCTTCAGTTTCGACATCCAAAA 59.513 34.615 0.00 0.00 0.00 2.44
4267 5394 6.824305 ATCTTCAGTTTCGACATCCAAAAT 57.176 33.333 0.00 0.00 0.00 1.82
4268 5395 6.633500 TCTTCAGTTTCGACATCCAAAATT 57.367 33.333 0.00 0.00 0.00 1.82
4269 5396 7.038154 TCTTCAGTTTCGACATCCAAAATTT 57.962 32.000 0.00 0.00 0.00 1.82
4270 5397 7.138736 TCTTCAGTTTCGACATCCAAAATTTC 58.861 34.615 0.00 0.00 0.00 2.17
4271 5398 6.633500 TCAGTTTCGACATCCAAAATTTCT 57.367 33.333 0.00 0.00 0.00 2.52
4272 5399 7.038154 TCAGTTTCGACATCCAAAATTTCTT 57.962 32.000 0.00 0.00 0.00 2.52
4273 5400 7.138736 TCAGTTTCGACATCCAAAATTTCTTC 58.861 34.615 0.00 0.00 0.00 2.87
4274 5401 7.013274 TCAGTTTCGACATCCAAAATTTCTTCT 59.987 33.333 0.00 0.00 0.00 2.85
4275 5402 7.324616 CAGTTTCGACATCCAAAATTTCTTCTC 59.675 37.037 0.00 0.00 0.00 2.87
4276 5403 7.229506 AGTTTCGACATCCAAAATTTCTTCTCT 59.770 33.333 0.00 0.00 0.00 3.10
4277 5404 6.486253 TCGACATCCAAAATTTCTTCTCTG 57.514 37.500 0.00 0.00 0.00 3.35
4278 5405 6.230472 TCGACATCCAAAATTTCTTCTCTGA 58.770 36.000 0.00 0.00 0.00 3.27
4279 5406 6.710295 TCGACATCCAAAATTTCTTCTCTGAA 59.290 34.615 0.00 0.00 0.00 3.02
4280 5407 7.391554 TCGACATCCAAAATTTCTTCTCTGAAT 59.608 33.333 0.00 0.00 0.00 2.57
4281 5408 7.484007 CGACATCCAAAATTTCTTCTCTGAATG 59.516 37.037 0.00 0.00 0.00 2.67
4282 5409 7.095270 ACATCCAAAATTTCTTCTCTGAATGC 58.905 34.615 0.00 0.00 0.00 3.56
4283 5410 6.906157 TCCAAAATTTCTTCTCTGAATGCT 57.094 33.333 0.00 0.00 0.00 3.79
4284 5411 7.294017 TCCAAAATTTCTTCTCTGAATGCTT 57.706 32.000 0.00 0.00 0.00 3.91
4285 5412 7.729116 TCCAAAATTTCTTCTCTGAATGCTTT 58.271 30.769 0.00 0.00 0.00 3.51
4286 5413 7.654520 TCCAAAATTTCTTCTCTGAATGCTTTG 59.345 33.333 0.00 0.00 0.00 2.77
4287 5414 7.440255 CCAAAATTTCTTCTCTGAATGCTTTGT 59.560 33.333 0.00 0.00 0.00 2.83
4288 5415 8.823818 CAAAATTTCTTCTCTGAATGCTTTGTT 58.176 29.630 0.00 0.00 0.00 2.83
4289 5416 8.953368 AAATTTCTTCTCTGAATGCTTTGTTT 57.047 26.923 0.00 0.00 0.00 2.83
4290 5417 8.585189 AATTTCTTCTCTGAATGCTTTGTTTC 57.415 30.769 0.00 0.00 0.00 2.78
4291 5418 5.695851 TCTTCTCTGAATGCTTTGTTTCC 57.304 39.130 0.00 0.00 0.00 3.13
4292 5419 4.214119 TCTTCTCTGAATGCTTTGTTTCCG 59.786 41.667 0.00 0.00 0.00 4.30
4293 5420 3.476552 TCTCTGAATGCTTTGTTTCCGT 58.523 40.909 0.00 0.00 0.00 4.69
4294 5421 4.637276 TCTCTGAATGCTTTGTTTCCGTA 58.363 39.130 0.00 0.00 0.00 4.02
4295 5422 5.245531 TCTCTGAATGCTTTGTTTCCGTAT 58.754 37.500 0.00 0.00 0.00 3.06
4296 5423 5.351465 TCTCTGAATGCTTTGTTTCCGTATC 59.649 40.000 0.00 0.00 0.00 2.24
4297 5424 5.245531 TCTGAATGCTTTGTTTCCGTATCT 58.754 37.500 0.00 0.00 0.00 1.98
4298 5425 5.122239 TCTGAATGCTTTGTTTCCGTATCTG 59.878 40.000 0.00 0.00 0.00 2.90
4299 5426 5.000591 TGAATGCTTTGTTTCCGTATCTGA 58.999 37.500 0.00 0.00 0.00 3.27
4300 5427 5.122239 TGAATGCTTTGTTTCCGTATCTGAG 59.878 40.000 0.00 0.00 0.00 3.35
4301 5428 4.265904 TGCTTTGTTTCCGTATCTGAGA 57.734 40.909 0.00 0.00 0.00 3.27
4302 5429 4.637276 TGCTTTGTTTCCGTATCTGAGAA 58.363 39.130 0.00 0.00 0.00 2.87
4303 5430 4.690748 TGCTTTGTTTCCGTATCTGAGAAG 59.309 41.667 0.00 0.00 0.00 2.85
4304 5431 4.093556 GCTTTGTTTCCGTATCTGAGAAGG 59.906 45.833 0.00 0.00 0.00 3.46
4307 5435 5.073311 TGTTTCCGTATCTGAGAAGGAAG 57.927 43.478 16.89 0.00 41.35 3.46
4309 5437 5.713389 TGTTTCCGTATCTGAGAAGGAAGTA 59.287 40.000 16.89 9.46 41.35 2.24
4312 5440 6.205101 TCCGTATCTGAGAAGGAAGTAAAC 57.795 41.667 4.45 0.00 0.00 2.01
4323 5451 8.342634 TGAGAAGGAAGTAAACATTTCTTTTCG 58.657 33.333 0.00 0.00 0.00 3.46
4344 5474 4.761739 TCGAAATGCTTTGTTCAGGATCTT 59.238 37.500 0.00 0.00 0.00 2.40
4380 5510 1.816835 CACTGCAGTTCAAGCATGGAT 59.183 47.619 18.94 0.00 41.82 3.41
4402 5539 0.545309 AGGCCAGGTTAGTCTCTGCA 60.545 55.000 5.01 0.00 0.00 4.41
4409 5546 2.503356 AGGTTAGTCTCTGCATTCCTGG 59.497 50.000 0.00 0.00 0.00 4.45
4433 5570 0.884259 TGACACTGCAACCATCCGTG 60.884 55.000 0.00 0.00 0.00 4.94
4507 5645 6.001460 TGCTAAACACTGCCTTTATACTGTT 58.999 36.000 0.00 0.00 0.00 3.16
4531 5669 2.064762 CAGTGCTTCTTTCCTCGTGAG 58.935 52.381 0.00 0.00 0.00 3.51
4549 5687 4.988540 CGTGAGGTTGTTAAAGACATCAGA 59.011 41.667 6.97 0.00 37.27 3.27
4617 5755 4.326826 TGGTCATCTGTTCCATGAGAAAC 58.673 43.478 0.00 0.00 35.85 2.78
4635 5773 9.793252 ATGAGAAACATTCTATTATTGTGTTGC 57.207 29.630 0.00 0.00 40.87 4.17
4643 5781 9.524106 CATTCTATTATTGTGTTGCATTGTCAT 57.476 29.630 0.00 0.00 0.00 3.06
4730 5868 4.558226 ACATTCATGGCAAGACTGTAGA 57.442 40.909 13.08 0.00 28.65 2.59
4812 5950 4.164294 GCATCTTTTGACAGACAGAATGC 58.836 43.478 0.00 0.00 42.53 3.56
4818 5956 2.497138 TGACAGACAGAATGCACCTTG 58.503 47.619 0.00 0.00 42.53 3.61
5055 6218 7.763356 TCCTCTAGAGATTAGAAAACAGAACG 58.237 38.462 21.76 0.00 0.00 3.95
5114 6293 7.613801 TGGCAAAGTATATGTTATCCTGTGTTT 59.386 33.333 0.00 0.00 0.00 2.83
5157 6340 4.973168 TCTGGCAGTGTTTTAGAGATTGT 58.027 39.130 15.27 0.00 0.00 2.71
5158 6341 5.376625 TCTGGCAGTGTTTTAGAGATTGTT 58.623 37.500 15.27 0.00 0.00 2.83
5160 6343 5.129634 TGGCAGTGTTTTAGAGATTGTTGA 58.870 37.500 0.00 0.00 0.00 3.18
5176 6359 6.604795 AGATTGTTGATCTGGGTTTAATGAGG 59.395 38.462 0.00 0.00 43.52 3.86
5315 6503 5.813672 GCTTACCAAACCGATTATGACAGTA 59.186 40.000 0.00 0.00 0.00 2.74
5348 6544 6.263842 TCTCAGTCTTCAGTCATGCAAAATTT 59.736 34.615 0.00 0.00 0.00 1.82
5352 6548 6.265196 AGTCTTCAGTCATGCAAAATTTACCA 59.735 34.615 0.00 0.00 0.00 3.25
5353 6549 6.583806 GTCTTCAGTCATGCAAAATTTACCAG 59.416 38.462 0.00 0.00 0.00 4.00
5354 6550 4.808558 TCAGTCATGCAAAATTTACCAGC 58.191 39.130 0.00 0.00 0.00 4.85
5360 9383 4.046938 TGCAAAATTTACCAGCGAAACA 57.953 36.364 0.00 0.00 0.00 2.83
5649 9679 8.621532 TCATAAAACAATATAGAGACCATGGC 57.378 34.615 13.04 4.70 0.00 4.40
5668 9732 7.663081 ACCATGGCTTCATATGTTGTCTATTAG 59.337 37.037 13.04 0.00 0.00 1.73
5713 9778 8.904099 AGTTTTTAGTTGGATTATATCTCCGG 57.096 34.615 0.00 0.00 35.41 5.14
5717 9782 4.753186 AGTTGGATTATATCTCCGGTCCT 58.247 43.478 0.00 0.00 35.41 3.85
5743 9808 2.297597 ACTATTCGCAGTCATAGGAGCC 59.702 50.000 0.00 0.00 0.00 4.70
5744 9809 1.123077 ATTCGCAGTCATAGGAGCCA 58.877 50.000 0.00 0.00 0.00 4.75
5745 9810 0.901827 TTCGCAGTCATAGGAGCCAA 59.098 50.000 0.00 0.00 0.00 4.52
5746 9811 1.123077 TCGCAGTCATAGGAGCCAAT 58.877 50.000 0.00 0.00 0.00 3.16
5747 9812 1.486310 TCGCAGTCATAGGAGCCAATT 59.514 47.619 0.00 0.00 0.00 2.32
5748 9813 2.092968 TCGCAGTCATAGGAGCCAATTT 60.093 45.455 0.00 0.00 0.00 1.82
5749 9814 2.289002 CGCAGTCATAGGAGCCAATTTC 59.711 50.000 0.00 0.00 0.00 2.17
5750 9815 3.282021 GCAGTCATAGGAGCCAATTTCA 58.718 45.455 0.00 0.00 0.00 2.69
5751 9816 3.887716 GCAGTCATAGGAGCCAATTTCAT 59.112 43.478 0.00 0.00 0.00 2.57
5752 9817 4.023365 GCAGTCATAGGAGCCAATTTCATC 60.023 45.833 0.00 0.00 0.00 2.92
5753 9818 5.128205 CAGTCATAGGAGCCAATTTCATCA 58.872 41.667 0.00 0.00 0.00 3.07
5754 9819 5.768662 CAGTCATAGGAGCCAATTTCATCAT 59.231 40.000 0.00 0.00 0.00 2.45
5755 9820 6.002704 AGTCATAGGAGCCAATTTCATCATC 58.997 40.000 0.00 0.00 0.00 2.92
5756 9821 6.002704 GTCATAGGAGCCAATTTCATCATCT 58.997 40.000 0.00 0.00 0.00 2.90
5757 9822 6.149142 GTCATAGGAGCCAATTTCATCATCTC 59.851 42.308 0.00 0.00 0.00 2.75
5758 9823 4.515028 AGGAGCCAATTTCATCATCTCA 57.485 40.909 0.00 0.00 0.00 3.27
5759 9824 4.863548 AGGAGCCAATTTCATCATCTCAA 58.136 39.130 0.00 0.00 0.00 3.02
5760 9825 5.266788 AGGAGCCAATTTCATCATCTCAAA 58.733 37.500 0.00 0.00 0.00 2.69
5761 9826 5.718130 AGGAGCCAATTTCATCATCTCAAAA 59.282 36.000 0.00 0.00 0.00 2.44
5762 9827 6.211986 AGGAGCCAATTTCATCATCTCAAAAA 59.788 34.615 0.00 0.00 0.00 1.94
5782 9847 5.876651 AAAAGAAAGGAGCCAATTTCAGT 57.123 34.783 7.59 0.00 37.78 3.41
5785 9850 3.823304 AGAAAGGAGCCAATTTCAGTGTC 59.177 43.478 7.59 0.00 37.78 3.67
5798 9863 1.613925 TCAGTGTCAAACGGAGAGGAG 59.386 52.381 0.00 0.00 0.00 3.69
5859 9930 6.591448 GCCGTATAGTGTACTGTAAACCTTTT 59.409 38.462 4.52 0.00 0.00 2.27
5860 9931 7.118245 GCCGTATAGTGTACTGTAAACCTTTTT 59.882 37.037 4.52 0.00 0.00 1.94
5861 9932 9.638239 CCGTATAGTGTACTGTAAACCTTTTTA 57.362 33.333 4.52 0.00 0.00 1.52
5873 14186 8.874744 TGTAAACCTTTTTAAAAGATTTCGGG 57.125 30.769 17.91 3.87 0.00 5.14
5876 14189 5.849510 ACCTTTTTAAAAGATTTCGGGGTG 58.150 37.500 17.91 1.12 0.00 4.61
5885 14198 5.373812 AAGATTTCGGGGTGTAATGATCT 57.626 39.130 0.00 0.00 0.00 2.75
5886 14199 6.494666 AAGATTTCGGGGTGTAATGATCTA 57.505 37.500 0.00 0.00 0.00 1.98
5887 14200 6.688073 AGATTTCGGGGTGTAATGATCTAT 57.312 37.500 0.00 0.00 0.00 1.98
5888 14201 7.792364 AGATTTCGGGGTGTAATGATCTATA 57.208 36.000 0.00 0.00 0.00 1.31
5889 14202 8.380742 AGATTTCGGGGTGTAATGATCTATAT 57.619 34.615 0.00 0.00 0.00 0.86
5890 14203 9.488762 AGATTTCGGGGTGTAATGATCTATATA 57.511 33.333 0.00 0.00 0.00 0.86
5992 14306 1.162951 TCTCCTCCCCCTTCTCCCTT 61.163 60.000 0.00 0.00 0.00 3.95
5993 14307 0.253394 CTCCTCCCCCTTCTCCCTTT 60.253 60.000 0.00 0.00 0.00 3.11
5994 14308 0.253207 TCCTCCCCCTTCTCCCTTTC 60.253 60.000 0.00 0.00 0.00 2.62
5995 14309 1.627297 CCTCCCCCTTCTCCCTTTCG 61.627 65.000 0.00 0.00 0.00 3.46
5996 14310 1.615424 TCCCCCTTCTCCCTTTCGG 60.615 63.158 0.00 0.00 0.00 4.30
5997 14311 1.923909 CCCCCTTCTCCCTTTCGGT 60.924 63.158 0.00 0.00 0.00 4.69
6000 14314 0.984995 CCCTTCTCCCTTTCGGTCTT 59.015 55.000 0.00 0.00 0.00 3.01
6001 14315 1.351350 CCCTTCTCCCTTTCGGTCTTT 59.649 52.381 0.00 0.00 0.00 2.52
6015 14330 2.027192 CGGTCTTTCCCCTTCATTGAGA 60.027 50.000 0.00 0.00 0.00 3.27
6016 14331 3.615155 GGTCTTTCCCCTTCATTGAGAG 58.385 50.000 0.00 0.00 0.00 3.20
6017 14332 3.264450 GGTCTTTCCCCTTCATTGAGAGA 59.736 47.826 0.00 0.00 0.00 3.10
6098 14422 5.050499 CGAACTACATGAAAGCATCCATCTC 60.050 44.000 0.00 0.00 30.68 2.75
6099 14423 5.363562 ACTACATGAAAGCATCCATCTCA 57.636 39.130 0.00 0.00 30.68 3.27
6100 14424 5.938279 ACTACATGAAAGCATCCATCTCAT 58.062 37.500 0.00 0.00 30.68 2.90
6101 14425 5.763698 ACTACATGAAAGCATCCATCTCATG 59.236 40.000 0.00 8.43 45.71 3.07
6133 14459 4.002982 TCACATGGTGTTAAGATGTCAGC 58.997 43.478 0.00 0.00 34.79 4.26
6146 14472 0.625316 TGTCAGCATAATGGTGCCCT 59.375 50.000 0.00 0.00 44.81 5.19
6147 14473 1.843206 TGTCAGCATAATGGTGCCCTA 59.157 47.619 0.00 0.00 44.81 3.53
6148 14474 2.442878 TGTCAGCATAATGGTGCCCTAT 59.557 45.455 0.00 0.00 44.81 2.57
6149 14475 3.117550 TGTCAGCATAATGGTGCCCTATT 60.118 43.478 0.00 0.00 44.81 1.73
6150 14476 4.103943 TGTCAGCATAATGGTGCCCTATTA 59.896 41.667 0.00 0.00 44.81 0.98
6178 14504 6.928979 AAGCATGAGAAGAGAGATGAAATG 57.071 37.500 0.00 0.00 0.00 2.32
6183 14509 7.677892 CATGAGAAGAGAGATGAAATGGGATA 58.322 38.462 0.00 0.00 0.00 2.59
6184 14510 7.868792 TGAGAAGAGAGATGAAATGGGATAT 57.131 36.000 0.00 0.00 0.00 1.63
6200 14530 6.024563 TGGGATATAAATTTCAGAGGCCAA 57.975 37.500 5.01 0.00 0.00 4.52
6218 14548 0.252375 AACCTTCGTACCTAGGGCCA 60.252 55.000 14.81 0.00 35.79 5.36
6245 14575 6.184789 CCAACAAAGGGGTAGAGCTTTAATA 58.815 40.000 0.00 0.00 0.00 0.98
6332 16079 2.811431 CGATGCTAGTTTTGAACCCACA 59.189 45.455 0.00 0.00 0.00 4.17
6333 16080 3.252215 CGATGCTAGTTTTGAACCCACAA 59.748 43.478 0.00 0.00 0.00 3.33
6356 16103 5.134725 ACATCCTAGGATTTGGAAGCATT 57.865 39.130 22.29 0.00 35.81 3.56
6361 16108 3.409804 AGGATTTGGAAGCATTGGGAT 57.590 42.857 0.00 0.00 0.00 3.85
6368 16116 7.874528 GGATTTGGAAGCATTGGGATTTATAAG 59.125 37.037 0.00 0.00 0.00 1.73
6398 16146 0.875059 GCCTGTGAGGTTGTAGTTGC 59.125 55.000 0.00 0.00 37.80 4.17
6399 16147 1.543429 GCCTGTGAGGTTGTAGTTGCT 60.543 52.381 0.00 0.00 37.80 3.91
6400 16148 2.417719 CCTGTGAGGTTGTAGTTGCTC 58.582 52.381 0.00 0.00 0.00 4.26
6401 16149 2.417719 CTGTGAGGTTGTAGTTGCTCC 58.582 52.381 0.00 0.00 0.00 4.70
6402 16150 1.071699 TGTGAGGTTGTAGTTGCTCCC 59.928 52.381 0.00 0.00 0.00 4.30
6403 16151 1.071699 GTGAGGTTGTAGTTGCTCCCA 59.928 52.381 0.00 0.00 0.00 4.37
6404 16152 1.771854 TGAGGTTGTAGTTGCTCCCAA 59.228 47.619 0.00 0.00 0.00 4.12
6405 16153 2.224523 TGAGGTTGTAGTTGCTCCCAAG 60.225 50.000 0.00 0.00 0.00 3.61
6406 16154 2.038557 GAGGTTGTAGTTGCTCCCAAGA 59.961 50.000 0.00 0.00 0.00 3.02
6407 16155 2.644798 AGGTTGTAGTTGCTCCCAAGAT 59.355 45.455 0.00 0.00 0.00 2.40
6408 16156 3.844211 AGGTTGTAGTTGCTCCCAAGATA 59.156 43.478 0.00 0.00 0.00 1.98
6409 16157 3.939592 GGTTGTAGTTGCTCCCAAGATAC 59.060 47.826 0.00 0.00 0.00 2.24
6410 16158 4.564821 GGTTGTAGTTGCTCCCAAGATACA 60.565 45.833 0.00 0.00 34.78 2.29
6411 16159 4.471904 TGTAGTTGCTCCCAAGATACAG 57.528 45.455 0.00 0.00 33.10 2.74
6412 16160 2.409948 AGTTGCTCCCAAGATACAGC 57.590 50.000 0.00 0.00 0.00 4.40
6413 16161 1.630369 AGTTGCTCCCAAGATACAGCA 59.370 47.619 0.00 0.00 40.13 4.41
6414 16162 2.240667 AGTTGCTCCCAAGATACAGCAT 59.759 45.455 0.00 0.00 41.44 3.79
6415 16163 2.615912 GTTGCTCCCAAGATACAGCATC 59.384 50.000 0.00 0.00 41.44 3.91
6416 16164 1.141657 TGCTCCCAAGATACAGCATCC 59.858 52.381 0.00 0.00 36.96 3.51
6417 16165 1.875576 GCTCCCAAGATACAGCATCCG 60.876 57.143 0.00 0.00 33.75 4.18
6418 16166 0.106708 TCCCAAGATACAGCATCCGC 59.893 55.000 0.00 0.00 33.75 5.54
6419 16167 1.224069 CCCAAGATACAGCATCCGCG 61.224 60.000 0.00 0.00 45.49 6.46
6420 16168 1.566563 CAAGATACAGCATCCGCGC 59.433 57.895 0.00 0.00 45.49 6.86
6421 16169 1.951130 AAGATACAGCATCCGCGCG 60.951 57.895 25.67 25.67 45.49 6.86
6422 16170 4.064491 GATACAGCATCCGCGCGC 62.064 66.667 27.36 23.91 45.49 6.86
6434 16182 4.210304 GCGCGCGTCCTTGTGATC 62.210 66.667 32.35 6.30 0.00 2.92
6435 16183 2.809174 CGCGCGTCCTTGTGATCA 60.809 61.111 24.19 0.00 0.00 2.92
6436 16184 2.379634 CGCGCGTCCTTGTGATCAA 61.380 57.895 24.19 0.00 0.00 2.57
6437 16185 1.866237 GCGCGTCCTTGTGATCAAA 59.134 52.632 8.43 0.00 32.87 2.69
6438 16186 0.452784 GCGCGTCCTTGTGATCAAAC 60.453 55.000 8.43 0.00 32.87 2.93
6439 16187 0.179250 CGCGTCCTTGTGATCAAACG 60.179 55.000 0.00 4.34 39.37 3.60
6440 16188 3.657537 CGTCCTTGTGATCAAACGC 57.342 52.632 0.00 0.00 33.30 4.84
6441 16189 0.179250 CGTCCTTGTGATCAAACGCG 60.179 55.000 3.53 3.53 33.30 6.01
6442 16190 0.452784 GTCCTTGTGATCAAACGCGC 60.453 55.000 5.73 0.00 32.87 6.86
6443 16191 0.882484 TCCTTGTGATCAAACGCGCA 60.882 50.000 5.73 0.00 32.87 6.09
6444 16192 0.725784 CCTTGTGATCAAACGCGCAC 60.726 55.000 5.73 5.58 32.87 5.34
6445 16193 0.725784 CTTGTGATCAAACGCGCACC 60.726 55.000 5.73 0.00 32.87 5.01
6446 16194 2.123988 TTGTGATCAAACGCGCACCC 62.124 55.000 5.73 0.00 0.00 4.61
6447 16195 2.031919 TGATCAAACGCGCACCCT 59.968 55.556 5.73 0.00 0.00 4.34
6448 16196 2.032634 TGATCAAACGCGCACCCTC 61.033 57.895 5.73 0.00 0.00 4.30
6449 16197 2.031919 ATCAAACGCGCACCCTCA 59.968 55.556 5.73 0.00 0.00 3.86
6450 16198 2.240612 GATCAAACGCGCACCCTCAC 62.241 60.000 5.73 0.00 0.00 3.51
6451 16199 2.731691 ATCAAACGCGCACCCTCACT 62.732 55.000 5.73 0.00 0.00 3.41
6452 16200 2.203153 AAACGCGCACCCTCACTT 60.203 55.556 5.73 0.00 0.00 3.16
6453 16201 2.542907 AAACGCGCACCCTCACTTG 61.543 57.895 5.73 0.00 0.00 3.16
6454 16202 4.988598 ACGCGCACCCTCACTTGG 62.989 66.667 5.73 0.00 0.00 3.61
6461 16209 2.347490 CCCTCACTTGGGTCGTGG 59.653 66.667 0.00 0.00 42.25 4.94
6462 16210 2.347490 CCTCACTTGGGTCGTGGG 59.653 66.667 0.00 0.00 33.31 4.61
6463 16211 2.358737 CTCACTTGGGTCGTGGGC 60.359 66.667 0.00 0.00 33.31 5.36
6464 16212 2.847234 TCACTTGGGTCGTGGGCT 60.847 61.111 0.00 0.00 33.31 5.19
6465 16213 2.113139 CACTTGGGTCGTGGGCTT 59.887 61.111 0.00 0.00 0.00 4.35
6466 16214 1.966451 CACTTGGGTCGTGGGCTTC 60.966 63.158 0.00 0.00 0.00 3.86
6467 16215 2.429930 CTTGGGTCGTGGGCTTCA 59.570 61.111 0.00 0.00 0.00 3.02
6468 16216 1.002134 CTTGGGTCGTGGGCTTCAT 60.002 57.895 0.00 0.00 0.00 2.57
6469 16217 0.609131 CTTGGGTCGTGGGCTTCATT 60.609 55.000 0.00 0.00 0.00 2.57
6470 16218 0.608035 TTGGGTCGTGGGCTTCATTC 60.608 55.000 0.00 0.00 0.00 2.67
6471 16219 1.002624 GGGTCGTGGGCTTCATTCA 60.003 57.895 0.00 0.00 0.00 2.57
6472 16220 1.026718 GGGTCGTGGGCTTCATTCAG 61.027 60.000 0.00 0.00 0.00 3.02
6473 16221 0.321653 GGTCGTGGGCTTCATTCAGT 60.322 55.000 0.00 0.00 0.00 3.41
6474 16222 1.079503 GTCGTGGGCTTCATTCAGTC 58.920 55.000 0.00 0.00 0.00 3.51
6475 16223 0.389817 TCGTGGGCTTCATTCAGTCG 60.390 55.000 0.00 0.00 0.00 4.18
6476 16224 1.796796 GTGGGCTTCATTCAGTCGC 59.203 57.895 0.00 0.00 0.00 5.19
6477 16225 1.741401 TGGGCTTCATTCAGTCGCG 60.741 57.895 0.00 0.00 0.00 5.87
6478 16226 2.464459 GGGCTTCATTCAGTCGCGG 61.464 63.158 6.13 0.00 0.00 6.46
6479 16227 2.401195 GCTTCATTCAGTCGCGGC 59.599 61.111 0.21 0.21 0.00 6.53
6480 16228 3.093278 CTTCATTCAGTCGCGGCC 58.907 61.111 7.31 0.00 0.00 6.13
6481 16229 2.435938 TTCATTCAGTCGCGGCCC 60.436 61.111 7.31 0.00 0.00 5.80
6482 16230 3.247056 TTCATTCAGTCGCGGCCCA 62.247 57.895 7.31 0.00 0.00 5.36
6483 16231 2.514592 CATTCAGTCGCGGCCCAT 60.515 61.111 7.31 0.00 0.00 4.00
6484 16232 2.514592 ATTCAGTCGCGGCCCATG 60.515 61.111 7.31 0.00 0.00 3.66
6485 16233 3.329542 ATTCAGTCGCGGCCCATGT 62.330 57.895 7.31 0.00 0.00 3.21
6486 16234 1.966901 ATTCAGTCGCGGCCCATGTA 61.967 55.000 7.31 0.00 0.00 2.29
6487 16235 2.572095 TTCAGTCGCGGCCCATGTAG 62.572 60.000 7.31 0.00 0.00 2.74
6488 16236 3.075005 AGTCGCGGCCCATGTAGT 61.075 61.111 7.31 0.00 0.00 2.73
6489 16237 2.890474 GTCGCGGCCCATGTAGTG 60.890 66.667 6.13 0.00 0.00 2.74
6490 16238 4.830765 TCGCGGCCCATGTAGTGC 62.831 66.667 6.13 0.00 0.00 4.40
6491 16239 4.838152 CGCGGCCCATGTAGTGCT 62.838 66.667 0.00 0.00 0.00 4.40
6492 16240 3.204827 GCGGCCCATGTAGTGCTG 61.205 66.667 0.00 0.00 34.48 4.41
6493 16241 3.204827 CGGCCCATGTAGTGCTGC 61.205 66.667 0.00 0.00 0.00 5.25
6494 16242 2.273449 GGCCCATGTAGTGCTGCT 59.727 61.111 0.00 0.00 0.00 4.24
6495 16243 1.526887 GGCCCATGTAGTGCTGCTA 59.473 57.895 0.00 0.00 0.00 3.49
6496 16244 0.533755 GGCCCATGTAGTGCTGCTAG 60.534 60.000 0.00 0.00 0.00 3.42
6497 16245 0.533755 GCCCATGTAGTGCTGCTAGG 60.534 60.000 0.00 0.00 0.00 3.02
6498 16246 0.833287 CCCATGTAGTGCTGCTAGGT 59.167 55.000 0.00 0.00 0.00 3.08
6499 16247 1.473965 CCCATGTAGTGCTGCTAGGTG 60.474 57.143 0.00 0.00 0.00 4.00
6500 16248 1.293924 CATGTAGTGCTGCTAGGTGC 58.706 55.000 0.00 0.00 43.25 5.01
6501 16249 1.134580 CATGTAGTGCTGCTAGGTGCT 60.135 52.381 0.00 0.00 43.37 4.40
6502 16250 0.247460 TGTAGTGCTGCTAGGTGCTG 59.753 55.000 0.00 0.00 43.37 4.41
6503 16251 0.532573 GTAGTGCTGCTAGGTGCTGA 59.467 55.000 0.00 0.00 42.27 4.26
6504 16252 0.532573 TAGTGCTGCTAGGTGCTGAC 59.467 55.000 0.00 0.00 42.27 3.51
6505 16253 2.097038 GTGCTGCTAGGTGCTGACG 61.097 63.158 0.00 0.00 42.27 4.35
6506 16254 2.275380 TGCTGCTAGGTGCTGACGA 61.275 57.895 0.00 0.00 42.27 4.20
6507 16255 1.807573 GCTGCTAGGTGCTGACGAC 60.808 63.158 0.00 0.00 42.27 4.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 9.844790 CTCAATGAAGTAGATACATTGCAAAAA 57.155 29.630 1.71 0.00 45.63 1.94
34 35 7.067372 CCCTCAATGAAGTAGATACATTGCAAA 59.933 37.037 1.71 0.00 45.63 3.68
36 37 6.057533 CCCTCAATGAAGTAGATACATTGCA 58.942 40.000 0.00 0.00 45.63 4.08
37 38 5.471456 CCCCTCAATGAAGTAGATACATTGC 59.529 44.000 0.00 0.00 45.63 3.56
39 40 6.409695 CCACCCCTCAATGAAGTAGATACATT 60.410 42.308 0.00 0.00 35.10 2.71
67 71 0.761187 ATGTATGGCCGTGAGCATCT 59.239 50.000 8.05 0.00 46.50 2.90
129 135 3.386486 CAACAACCATATGATGCATGCC 58.614 45.455 16.68 0.28 0.00 4.40
134 140 4.046462 GTGATGCAACAACCATATGATGC 58.954 43.478 3.65 7.27 45.94 3.91
226 232 9.942850 AGGATGGGTCATTTTGTAAATAAAAAG 57.057 29.630 0.00 0.00 33.67 2.27
232 238 7.315066 ACAAAGGATGGGTCATTTTGTAAAT 57.685 32.000 8.20 0.00 39.64 1.40
233 239 6.739331 ACAAAGGATGGGTCATTTTGTAAA 57.261 33.333 8.20 0.00 39.64 2.01
234 240 6.209788 GGTACAAAGGATGGGTCATTTTGTAA 59.790 38.462 14.34 3.53 41.82 2.41
235 241 5.712917 GGTACAAAGGATGGGTCATTTTGTA 59.287 40.000 11.03 11.03 40.73 2.41
334 342 7.691213 AGGTAATCTCATCCGAGTCTAATAGA 58.309 38.462 0.00 0.00 40.44 1.98
358 368 9.487790 TTTTTAGGTCCAAAATAGCATCAAAAG 57.512 29.630 0.00 0.00 0.00 2.27
385 395 7.248976 TCCTGATGCTTCTAAATCCTAGGATA 58.751 38.462 24.78 9.36 33.97 2.59
398 408 6.064717 GGTGGTTATAATTCCTGATGCTTCT 58.935 40.000 0.88 0.00 0.00 2.85
411 421 7.341256 TCAACTAGAGTCTTCGGTGGTTATAAT 59.659 37.037 0.00 0.00 0.00 1.28
422 432 5.290386 ACCAAAGTTCAACTAGAGTCTTCG 58.710 41.667 0.00 0.00 0.00 3.79
444 897 8.548721 CAAACGAGGGATATAACACATCTTAAC 58.451 37.037 0.00 0.00 0.00 2.01
589 1125 0.029700 CCCATGTCGTGTCGCGTATA 59.970 55.000 5.77 0.00 42.13 1.47
590 1126 1.226859 CCCATGTCGTGTCGCGTAT 60.227 57.895 5.77 0.00 42.13 3.06
591 1127 2.144833 AACCCATGTCGTGTCGCGTA 62.145 55.000 5.77 0.00 42.13 4.42
592 1128 2.144833 TAACCCATGTCGTGTCGCGT 62.145 55.000 5.77 0.00 42.13 6.01
593 1129 1.009903 TTAACCCATGTCGTGTCGCG 61.010 55.000 0.00 0.00 43.01 5.87
594 1130 1.149987 TTTAACCCATGTCGTGTCGC 58.850 50.000 0.00 0.00 0.00 5.19
595 1131 3.881780 TTTTTAACCCATGTCGTGTCG 57.118 42.857 0.00 0.00 0.00 4.35
596 1132 5.180492 TCAGATTTTTAACCCATGTCGTGTC 59.820 40.000 0.00 0.00 0.00 3.67
597 1133 5.067273 TCAGATTTTTAACCCATGTCGTGT 58.933 37.500 0.00 0.00 0.00 4.49
598 1134 5.621197 TCAGATTTTTAACCCATGTCGTG 57.379 39.130 0.00 0.00 0.00 4.35
599 1135 7.110155 ACTATCAGATTTTTAACCCATGTCGT 58.890 34.615 0.00 0.00 0.00 4.34
600 1136 7.553881 ACTATCAGATTTTTAACCCATGTCG 57.446 36.000 0.00 0.00 0.00 4.35
692 1229 1.335810 GGTTCGGTTTTGGTCAGGAAC 59.664 52.381 0.00 0.00 34.54 3.62
753 1290 7.686529 CGATTCGACTCGTGAAAAATGAAATTA 59.313 33.333 16.18 0.00 32.79 1.40
839 1377 1.202177 CGCCTTCCAAAATGGTCGATG 60.202 52.381 0.00 0.00 39.03 3.84
856 1394 1.125270 CGTGGCAAAAACTAAACGCC 58.875 50.000 0.00 0.00 43.28 5.68
886 1555 7.664758 AGGAAATCCTGCTAAATGATTTATGC 58.335 34.615 0.00 5.49 46.55 3.14
910 1770 6.043411 GGTACCACTACTGAGATTTTGCTAG 58.957 44.000 7.15 0.00 0.00 3.42
1261 2174 5.392811 GCAGTAACCGAAGTGTACTACAGAT 60.393 44.000 0.00 0.00 0.00 2.90
1262 2175 4.083110 GCAGTAACCGAAGTGTACTACAGA 60.083 45.833 0.00 0.00 0.00 3.41
1301 2214 5.878116 AGACTAAGAGCTGAGTACAGTACTG 59.122 44.000 21.44 21.44 45.04 2.74
1314 2227 0.248843 GCACCAGCAGACTAAGAGCT 59.751 55.000 0.00 0.00 41.58 4.09
1315 2228 0.248843 AGCACCAGCAGACTAAGAGC 59.751 55.000 0.00 0.00 45.49 4.09
1317 2230 2.232452 GAGAAGCACCAGCAGACTAAGA 59.768 50.000 0.00 0.00 45.49 2.10
1318 2231 2.615869 GAGAAGCACCAGCAGACTAAG 58.384 52.381 0.00 0.00 45.49 2.18
1319 2232 1.067565 CGAGAAGCACCAGCAGACTAA 60.068 52.381 0.00 0.00 45.49 2.24
1445 2358 3.775654 GCCACTCCCTGACCCTCG 61.776 72.222 0.00 0.00 0.00 4.63
1462 2375 0.390124 GGATGAGCCAGCTCTGAGAG 59.610 60.000 19.71 4.80 43.12 3.20
1541 2454 2.024414 ACTGACCAACACCAAGCTTTC 58.976 47.619 0.00 0.00 0.00 2.62
1776 2740 9.170734 CAGCCATAGCATTATGTTTCACTATAT 57.829 33.333 0.00 0.00 43.56 0.86
1838 2804 5.405873 GGAAACTAGTAACTGACAGTTGAGC 59.594 44.000 27.44 17.65 39.11 4.26
2042 3008 1.425066 TCCCAGCAAACTCAACCTGAT 59.575 47.619 0.00 0.00 0.00 2.90
2222 3204 7.955918 AGATTGAGCTAATGGTTGAACTTTTT 58.044 30.769 0.00 0.00 0.00 1.94
2368 3350 7.109501 ACACATTGCTAGGTACAAACATGATA 58.890 34.615 0.00 0.00 0.00 2.15
2468 3450 5.434408 TGGAATGAAACAGAGATCATCAGG 58.566 41.667 0.00 0.00 35.29 3.86
2489 3471 7.539710 CGCAAATGGTCAATGAGAATAATATGG 59.460 37.037 0.00 0.00 0.00 2.74
2506 3488 1.001020 TCCCATCAGCGCAAATGGT 60.001 52.632 28.63 7.60 40.76 3.55
2542 3524 8.305046 TGGCATAAGGAGCTTAATATTTTTGT 57.695 30.769 0.00 0.00 29.35 2.83
2555 3537 7.560368 AGTGAAGTATATATGGCATAAGGAGC 58.440 38.462 11.86 1.80 0.00 4.70
2572 3554 5.651139 AGATGGCGACTTTACTAGTGAAGTA 59.349 40.000 27.44 15.67 39.15 2.24
2573 3555 4.463186 AGATGGCGACTTTACTAGTGAAGT 59.537 41.667 27.65 27.65 41.30 3.01
2657 3639 6.422701 CAGTTGTGAAAATCTGCACATTGAAT 59.577 34.615 0.00 0.00 43.73 2.57
2713 3695 2.795329 ACGTTCCCAGAAAATGATGCT 58.205 42.857 0.00 0.00 0.00 3.79
2734 3716 3.321111 AGAAGACCTGCAACTCGTCTTTA 59.679 43.478 15.33 0.00 44.71 1.85
2746 3728 3.129462 GGAAATAGGCAAAGAAGACCTGC 59.871 47.826 0.00 0.00 34.92 4.85
2773 3755 6.653020 ACCTGTTGAGTGATTAATCAGCATA 58.347 36.000 18.47 10.53 40.42 3.14
2889 3871 0.106819 GCATGTCTGAGCCCCTTCAT 60.107 55.000 0.00 0.00 0.00 2.57
2934 3916 5.278957 CCACAAGAAAATCGAAAGGAATGGT 60.279 40.000 0.00 0.00 0.00 3.55
2937 3919 6.624423 CATCCACAAGAAAATCGAAAGGAAT 58.376 36.000 0.00 0.00 0.00 3.01
2942 3924 4.844998 TGCATCCACAAGAAAATCGAAA 57.155 36.364 0.00 0.00 0.00 3.46
2945 3927 4.359971 TCATGCATCCACAAGAAAATCG 57.640 40.909 0.00 0.00 0.00 3.34
2953 3935 5.408880 ACATTTGAATCATGCATCCACAA 57.591 34.783 0.00 0.00 0.00 3.33
3012 3995 3.118629 ACGCAGATCCATTAAGAGCAAGA 60.119 43.478 0.00 0.00 0.00 3.02
3013 3996 3.201290 ACGCAGATCCATTAAGAGCAAG 58.799 45.455 0.00 0.00 0.00 4.01
3015 3998 2.988010 ACGCAGATCCATTAAGAGCA 57.012 45.000 0.00 0.00 0.00 4.26
3016 3999 3.623060 TCAAACGCAGATCCATTAAGAGC 59.377 43.478 0.00 0.00 0.00 4.09
3017 4000 4.872691 AGTCAAACGCAGATCCATTAAGAG 59.127 41.667 0.00 0.00 0.00 2.85
3018 4001 4.832248 AGTCAAACGCAGATCCATTAAGA 58.168 39.130 0.00 0.00 0.00 2.10
3019 4002 5.551760 AAGTCAAACGCAGATCCATTAAG 57.448 39.130 0.00 0.00 0.00 1.85
3020 4003 5.957842 AAAGTCAAACGCAGATCCATTAA 57.042 34.783 0.00 0.00 0.00 1.40
3021 4004 5.064707 GCTAAAGTCAAACGCAGATCCATTA 59.935 40.000 0.00 0.00 0.00 1.90
3022 4005 4.142600 GCTAAAGTCAAACGCAGATCCATT 60.143 41.667 0.00 0.00 0.00 3.16
3023 4006 3.375299 GCTAAAGTCAAACGCAGATCCAT 59.625 43.478 0.00 0.00 0.00 3.41
3024 4007 2.742053 GCTAAAGTCAAACGCAGATCCA 59.258 45.455 0.00 0.00 0.00 3.41
3025 4008 2.742053 TGCTAAAGTCAAACGCAGATCC 59.258 45.455 0.00 0.00 0.00 3.36
3026 4009 3.424962 GGTGCTAAAGTCAAACGCAGATC 60.425 47.826 0.00 0.00 0.00 2.75
3027 4010 2.484264 GGTGCTAAAGTCAAACGCAGAT 59.516 45.455 0.00 0.00 0.00 2.90
3028 4011 1.871039 GGTGCTAAAGTCAAACGCAGA 59.129 47.619 0.00 0.00 0.00 4.26
3029 4012 1.873591 AGGTGCTAAAGTCAAACGCAG 59.126 47.619 0.00 0.00 0.00 5.18
3030 4013 1.961793 AGGTGCTAAAGTCAAACGCA 58.038 45.000 0.00 0.00 0.00 5.24
3031 4014 3.042887 CAAAGGTGCTAAAGTCAAACGC 58.957 45.455 0.00 0.00 0.00 4.84
3032 4015 3.550030 CCCAAAGGTGCTAAAGTCAAACG 60.550 47.826 0.00 0.00 0.00 3.60
3033 4016 3.977427 CCCAAAGGTGCTAAAGTCAAAC 58.023 45.455 0.00 0.00 0.00 2.93
3047 4030 5.816682 ACTTCTATCCAGTTAACCCAAAGG 58.183 41.667 0.88 0.00 40.04 3.11
3048 4031 7.499232 CCATACTTCTATCCAGTTAACCCAAAG 59.501 40.741 0.88 0.31 0.00 2.77
3049 4032 7.183112 TCCATACTTCTATCCAGTTAACCCAAA 59.817 37.037 0.88 0.00 0.00 3.28
3052 4035 6.742559 TCCATACTTCTATCCAGTTAACCC 57.257 41.667 0.88 0.00 0.00 4.11
3066 4049 7.158021 CAGATAGATCCAACCTTCCATACTTC 58.842 42.308 0.00 0.00 0.00 3.01
3104 4087 6.689554 TCGTACAACAATATCAACTGGTACA 58.310 36.000 0.00 0.00 32.35 2.90
3105 4088 7.585286 TTCGTACAACAATATCAACTGGTAC 57.415 36.000 0.00 0.00 0.00 3.34
3120 4103 4.060288 TGACGCATGATTTTCGTACAAC 57.940 40.909 0.00 0.00 36.50 3.32
3127 4110 5.398169 TGGTAACATTGACGCATGATTTTC 58.602 37.500 0.00 0.00 46.17 2.29
3128 4111 5.384063 TGGTAACATTGACGCATGATTTT 57.616 34.783 0.00 0.00 46.17 1.82
3147 4130 9.533831 AAATCACTCCTAATTGTAATTCTTGGT 57.466 29.630 0.00 0.00 0.00 3.67
3155 4138 6.007076 TGCCACAAATCACTCCTAATTGTAA 58.993 36.000 0.00 0.00 33.24 2.41
3198 4181 4.604156 TGTCACTGACATCTGGTAGATCT 58.396 43.478 7.84 0.00 37.67 2.75
3203 4186 7.898014 ATATTACTGTCACTGACATCTGGTA 57.102 36.000 12.34 8.31 41.94 3.25
3206 4189 6.760298 AGCAATATTACTGTCACTGACATCTG 59.240 38.462 12.34 4.07 41.94 2.90
3240 4223 6.818644 ACTGAACAGATAATGTCGCTAAACAT 59.181 34.615 8.87 0.00 43.00 2.71
3247 4230 5.786401 AAAGACTGAACAGATAATGTCGC 57.214 39.130 8.87 0.00 43.00 5.19
3248 4231 8.535592 GTCATAAAGACTGAACAGATAATGTCG 58.464 37.037 8.87 0.00 42.12 4.35
3341 4324 6.748658 CCAGTCATTATGTAAACATGCAAGTG 59.251 38.462 5.85 0.00 37.15 3.16
3376 4359 8.268738 GGCAAAAGACAAAATAATGCGAATATC 58.731 33.333 0.00 0.00 33.30 1.63
3380 4363 4.688413 GGGCAAAAGACAAAATAATGCGAA 59.312 37.500 0.00 0.00 33.30 4.70
3381 4364 4.241681 GGGCAAAAGACAAAATAATGCGA 58.758 39.130 0.00 0.00 33.30 5.10
3389 4372 4.141846 TGCTTGTATGGGCAAAAGACAAAA 60.142 37.500 0.00 0.00 35.40 2.44
3396 4379 4.965814 TCAAAATGCTTGTATGGGCAAAA 58.034 34.783 0.00 0.00 41.90 2.44
3419 4402 3.865745 GCATCACACCATCACTACAGTAC 59.134 47.826 0.00 0.00 0.00 2.73
3611 4594 3.250762 TGAAGAAACATCCAAAGCAGTCG 59.749 43.478 0.00 0.00 0.00 4.18
3646 4629 1.077828 TGGGGGTTGCAAATGGTATCA 59.922 47.619 0.00 0.00 0.00 2.15
3652 4635 1.482748 AAGGCTGGGGGTTGCAAATG 61.483 55.000 0.00 0.00 0.00 2.32
3709 4692 8.503428 AGTATTAGAGAGGACATCCATCAATT 57.497 34.615 0.00 0.00 38.89 2.32
3716 4699 7.787028 ACTTTTGAGTATTAGAGAGGACATCC 58.213 38.462 0.00 0.00 0.00 3.51
3718 4701 9.482175 AGTACTTTTGAGTATTAGAGAGGACAT 57.518 33.333 0.00 0.00 0.00 3.06
3727 4710 9.155975 ACAGATGCAAGTACTTTTGAGTATTAG 57.844 33.333 5.07 0.35 0.00 1.73
3738 4846 7.744087 TGAATGTTAACAGATGCAAGTACTT 57.256 32.000 14.65 1.12 0.00 2.24
3758 4866 4.330250 AGTGTGCTAGCTGACATTTGAAT 58.670 39.130 17.23 0.00 0.00 2.57
3761 4869 2.417933 GGAGTGTGCTAGCTGACATTTG 59.582 50.000 17.23 0.00 0.00 2.32
3765 4873 1.047801 TTGGAGTGTGCTAGCTGACA 58.952 50.000 17.23 10.14 0.00 3.58
3766 4874 1.801178 GTTTGGAGTGTGCTAGCTGAC 59.199 52.381 17.23 12.08 0.00 3.51
3767 4875 1.605457 CGTTTGGAGTGTGCTAGCTGA 60.605 52.381 17.23 0.00 0.00 4.26
3768 4876 0.792640 CGTTTGGAGTGTGCTAGCTG 59.207 55.000 17.23 0.00 0.00 4.24
3769 4877 0.393077 ACGTTTGGAGTGTGCTAGCT 59.607 50.000 17.23 0.00 0.00 3.32
3770 4878 1.226746 AACGTTTGGAGTGTGCTAGC 58.773 50.000 8.10 8.10 0.00 3.42
3771 4879 3.120649 GCTTAACGTTTGGAGTGTGCTAG 60.121 47.826 5.91 0.00 0.00 3.42
3772 4880 2.803956 GCTTAACGTTTGGAGTGTGCTA 59.196 45.455 5.91 0.00 0.00 3.49
3773 4881 1.602377 GCTTAACGTTTGGAGTGTGCT 59.398 47.619 5.91 0.00 0.00 4.40
3774 4882 1.332375 TGCTTAACGTTTGGAGTGTGC 59.668 47.619 5.91 0.72 0.00 4.57
3775 4883 3.311322 TCTTGCTTAACGTTTGGAGTGTG 59.689 43.478 5.91 0.00 0.00 3.82
3776 4884 3.537580 TCTTGCTTAACGTTTGGAGTGT 58.462 40.909 5.91 0.00 0.00 3.55
3777 4885 3.560068 ACTCTTGCTTAACGTTTGGAGTG 59.440 43.478 5.91 2.26 32.57 3.51
3778 4886 3.805207 ACTCTTGCTTAACGTTTGGAGT 58.195 40.909 5.91 8.59 0.00 3.85
3779 4887 4.813296 AACTCTTGCTTAACGTTTGGAG 57.187 40.909 5.91 3.84 0.00 3.86
3780 4888 4.636648 TCAAACTCTTGCTTAACGTTTGGA 59.363 37.500 5.91 0.00 42.63 3.53
3781 4889 4.915704 TCAAACTCTTGCTTAACGTTTGG 58.084 39.130 5.91 0.51 42.63 3.28
3782 4890 4.437820 GCTCAAACTCTTGCTTAACGTTTG 59.562 41.667 5.91 0.88 43.33 2.93
3783 4891 4.095782 TGCTCAAACTCTTGCTTAACGTTT 59.904 37.500 5.91 0.00 32.14 3.60
3784 4892 3.625764 TGCTCAAACTCTTGCTTAACGTT 59.374 39.130 5.88 5.88 32.14 3.99
3785 4893 3.202906 TGCTCAAACTCTTGCTTAACGT 58.797 40.909 0.00 0.00 32.14 3.99
3786 4894 3.878086 TGCTCAAACTCTTGCTTAACG 57.122 42.857 0.00 0.00 32.14 3.18
3787 4895 7.535599 GTCTTTATGCTCAAACTCTTGCTTAAC 59.464 37.037 0.00 0.00 32.14 2.01
3788 4896 7.445402 AGTCTTTATGCTCAAACTCTTGCTTAA 59.555 33.333 0.00 0.00 32.14 1.85
3789 4897 6.936900 AGTCTTTATGCTCAAACTCTTGCTTA 59.063 34.615 0.00 0.00 32.14 3.09
3790 4898 5.767168 AGTCTTTATGCTCAAACTCTTGCTT 59.233 36.000 0.00 0.00 32.14 3.91
3791 4899 5.312079 AGTCTTTATGCTCAAACTCTTGCT 58.688 37.500 0.00 0.00 32.14 3.91
3792 4900 5.619625 AGTCTTTATGCTCAAACTCTTGC 57.380 39.130 0.00 0.00 32.14 4.01
3796 4904 8.131731 ACTTTCAAAGTCTTTATGCTCAAACTC 58.868 33.333 0.00 0.00 37.02 3.01
3873 4995 3.634504 TCACCCAGGGATGATTCATTTG 58.365 45.455 14.54 0.00 0.00 2.32
3875 4997 4.017222 TCTTTCACCCAGGGATGATTCATT 60.017 41.667 14.54 0.00 0.00 2.57
3891 5013 1.728971 CATGCGTCACCTCTCTTTCAC 59.271 52.381 0.00 0.00 0.00 3.18
3893 5015 1.363744 CCATGCGTCACCTCTCTTTC 58.636 55.000 0.00 0.00 0.00 2.62
3896 5018 3.023949 GCCCATGCGTCACCTCTCT 62.024 63.158 0.00 0.00 0.00 3.10
3897 5019 2.512515 GCCCATGCGTCACCTCTC 60.513 66.667 0.00 0.00 0.00 3.20
3905 5027 3.361977 GAAACACGGCCCATGCGT 61.362 61.111 0.00 0.00 38.85 5.24
3906 5028 3.039202 GAGAAACACGGCCCATGCG 62.039 63.158 0.00 0.00 38.85 4.73
3954 5076 1.214589 GCTTGGTGCTTGCTGATGG 59.785 57.895 0.00 0.00 38.95 3.51
3990 5112 8.992835 ACCTACAATAAGAGTTAAACTTACGG 57.007 34.615 5.80 4.70 33.58 4.02
3999 5121 8.603898 TCATTCCTGACCTACAATAAGAGTTA 57.396 34.615 0.00 0.00 0.00 2.24
4007 5129 5.189180 GCTTTCTCATTCCTGACCTACAAT 58.811 41.667 0.00 0.00 0.00 2.71
4013 5135 3.883669 AGATGCTTTCTCATTCCTGACC 58.116 45.455 0.00 0.00 0.00 4.02
4042 5164 3.910627 AGGACTAACACCACAAGGAGAAT 59.089 43.478 0.00 0.00 38.69 2.40
4054 5176 6.484818 TTTACGGCATAAAAGGACTAACAC 57.515 37.500 0.00 0.00 29.46 3.32
4073 5195 8.950208 ATCTGCTCTATACAGTTTTCCTTTAC 57.050 34.615 0.00 0.00 36.50 2.01
4084 5206 6.947903 CAGCACAATATCTGCTCTATACAG 57.052 41.667 5.12 0.00 43.34 2.74
4098 5220 1.608055 AACAGCACAGCAGCACAATA 58.392 45.000 0.00 0.00 36.85 1.90
4108 5230 5.021033 AGAATCTGAGGATAACAGCACAG 57.979 43.478 0.00 0.00 0.00 3.66
4118 5240 9.836179 ATAAACAGGTAGATAGAATCTGAGGAT 57.164 33.333 0.00 0.00 40.51 3.24
4138 5260 9.072375 TCTGTAATGGATGAAACAACATAAACA 57.928 29.630 0.00 0.00 0.00 2.83
4152 5274 6.825213 TGGAAATGTCTTCTCTGTAATGGATG 59.175 38.462 0.00 0.00 0.00 3.51
4153 5275 6.962182 TGGAAATGTCTTCTCTGTAATGGAT 58.038 36.000 0.00 0.00 0.00 3.41
4218 5342 2.354203 CGAGGAGAAAAGGACCTGAAGG 60.354 54.545 0.00 0.00 42.17 3.46
4238 5365 5.220303 GGATGTCGAAACTGAAGATTCTTCG 60.220 44.000 18.95 15.79 40.07 3.79
4239 5366 5.639506 TGGATGTCGAAACTGAAGATTCTTC 59.360 40.000 17.76 17.76 0.00 2.87
4246 5373 7.141363 AGAAATTTTGGATGTCGAAACTGAAG 58.859 34.615 0.00 0.00 32.02 3.02
4251 5378 7.324616 CAGAGAAGAAATTTTGGATGTCGAAAC 59.675 37.037 0.00 0.00 32.02 2.78
4254 5381 6.230472 TCAGAGAAGAAATTTTGGATGTCGA 58.770 36.000 0.00 0.00 0.00 4.20
4256 5383 7.275123 GCATTCAGAGAAGAAATTTTGGATGTC 59.725 37.037 7.91 0.00 0.00 3.06
4257 5384 7.039223 AGCATTCAGAGAAGAAATTTTGGATGT 60.039 33.333 7.91 0.00 0.00 3.06
4258 5385 7.321153 AGCATTCAGAGAAGAAATTTTGGATG 58.679 34.615 3.20 3.20 0.00 3.51
4259 5386 7.477945 AGCATTCAGAGAAGAAATTTTGGAT 57.522 32.000 0.00 0.00 0.00 3.41
4260 5387 6.906157 AGCATTCAGAGAAGAAATTTTGGA 57.094 33.333 0.00 0.00 0.00 3.53
4261 5388 7.440255 ACAAAGCATTCAGAGAAGAAATTTTGG 59.560 33.333 0.00 0.00 34.30 3.28
4262 5389 8.361592 ACAAAGCATTCAGAGAAGAAATTTTG 57.638 30.769 0.00 0.00 35.12 2.44
4263 5390 8.953368 AACAAAGCATTCAGAGAAGAAATTTT 57.047 26.923 0.00 0.00 0.00 1.82
4264 5391 8.953368 AAACAAAGCATTCAGAGAAGAAATTT 57.047 26.923 0.00 0.00 0.00 1.82
4265 5392 7.654923 GGAAACAAAGCATTCAGAGAAGAAATT 59.345 33.333 0.00 0.00 0.00 1.82
4266 5393 7.150640 GGAAACAAAGCATTCAGAGAAGAAAT 58.849 34.615 0.00 0.00 0.00 2.17
4267 5394 6.507023 GGAAACAAAGCATTCAGAGAAGAAA 58.493 36.000 0.00 0.00 0.00 2.52
4268 5395 5.277974 CGGAAACAAAGCATTCAGAGAAGAA 60.278 40.000 0.00 0.00 0.00 2.52
4269 5396 4.214119 CGGAAACAAAGCATTCAGAGAAGA 59.786 41.667 0.00 0.00 0.00 2.87
4270 5397 4.023707 ACGGAAACAAAGCATTCAGAGAAG 60.024 41.667 0.00 0.00 0.00 2.85
4271 5398 3.882888 ACGGAAACAAAGCATTCAGAGAA 59.117 39.130 0.00 0.00 0.00 2.87
4272 5399 3.476552 ACGGAAACAAAGCATTCAGAGA 58.523 40.909 0.00 0.00 0.00 3.10
4273 5400 3.904136 ACGGAAACAAAGCATTCAGAG 57.096 42.857 0.00 0.00 0.00 3.35
4274 5401 5.122239 CAGATACGGAAACAAAGCATTCAGA 59.878 40.000 0.00 0.00 0.00 3.27
4275 5402 5.122239 TCAGATACGGAAACAAAGCATTCAG 59.878 40.000 0.00 0.00 0.00 3.02
4276 5403 5.000591 TCAGATACGGAAACAAAGCATTCA 58.999 37.500 0.00 0.00 0.00 2.57
4277 5404 5.351465 TCTCAGATACGGAAACAAAGCATTC 59.649 40.000 0.00 0.00 0.00 2.67
4278 5405 5.245531 TCTCAGATACGGAAACAAAGCATT 58.754 37.500 0.00 0.00 0.00 3.56
4279 5406 4.832248 TCTCAGATACGGAAACAAAGCAT 58.168 39.130 0.00 0.00 0.00 3.79
4280 5407 4.265904 TCTCAGATACGGAAACAAAGCA 57.734 40.909 0.00 0.00 0.00 3.91
4281 5408 4.093556 CCTTCTCAGATACGGAAACAAAGC 59.906 45.833 0.00 0.00 0.00 3.51
4282 5409 5.479306 TCCTTCTCAGATACGGAAACAAAG 58.521 41.667 0.00 0.00 0.00 2.77
4283 5410 5.477607 TCCTTCTCAGATACGGAAACAAA 57.522 39.130 0.00 0.00 0.00 2.83
4284 5411 5.011738 ACTTCCTTCTCAGATACGGAAACAA 59.988 40.000 3.13 0.00 33.73 2.83
4285 5412 4.527038 ACTTCCTTCTCAGATACGGAAACA 59.473 41.667 3.13 0.00 33.73 2.83
4286 5413 5.074584 ACTTCCTTCTCAGATACGGAAAC 57.925 43.478 3.13 0.00 33.73 2.78
4287 5414 6.845758 TTACTTCCTTCTCAGATACGGAAA 57.154 37.500 3.13 0.00 33.73 3.13
4288 5415 6.209986 TGTTTACTTCCTTCTCAGATACGGAA 59.790 38.462 1.85 1.85 33.14 4.30
4289 5416 5.713389 TGTTTACTTCCTTCTCAGATACGGA 59.287 40.000 0.00 0.00 0.00 4.69
4290 5417 5.962433 TGTTTACTTCCTTCTCAGATACGG 58.038 41.667 0.00 0.00 0.00 4.02
4291 5418 8.480643 AAATGTTTACTTCCTTCTCAGATACG 57.519 34.615 0.00 0.00 0.00 3.06
4292 5419 9.660180 AGAAATGTTTACTTCCTTCTCAGATAC 57.340 33.333 0.00 0.00 0.00 2.24
4294 5421 9.579932 AAAGAAATGTTTACTTCCTTCTCAGAT 57.420 29.630 0.00 0.00 0.00 2.90
4295 5422 8.980481 AAAGAAATGTTTACTTCCTTCTCAGA 57.020 30.769 0.00 0.00 0.00 3.27
4296 5423 9.670719 GAAAAGAAATGTTTACTTCCTTCTCAG 57.329 33.333 0.00 0.00 0.00 3.35
4297 5424 8.342634 CGAAAAGAAATGTTTACTTCCTTCTCA 58.657 33.333 0.00 0.00 0.00 3.27
4298 5425 8.557029 TCGAAAAGAAATGTTTACTTCCTTCTC 58.443 33.333 0.00 0.00 0.00 2.87
4299 5426 8.446599 TCGAAAAGAAATGTTTACTTCCTTCT 57.553 30.769 0.00 0.00 0.00 2.85
4300 5427 9.511144 TTTCGAAAAGAAATGTTTACTTCCTTC 57.489 29.630 8.44 0.00 43.35 3.46
4323 5451 7.820648 TCTTAAGATCCTGAACAAAGCATTTC 58.179 34.615 0.00 0.00 35.03 2.17
4344 5474 3.951037 TGCAGTGCAAAAACTTCCTCTTA 59.049 39.130 17.26 0.00 34.76 2.10
4380 5510 0.413832 AGAGACTAACCTGGCCTGGA 59.586 55.000 33.43 12.58 0.00 3.86
4402 5539 1.547372 GCAGTGTCATTTGCCAGGAAT 59.453 47.619 0.00 0.00 34.28 3.01
4409 5546 2.331194 GATGGTTGCAGTGTCATTTGC 58.669 47.619 5.58 5.58 40.67 3.68
4433 5570 6.909357 GCTGCAACACTAATGATAGAAATGTC 59.091 38.462 0.00 0.00 33.15 3.06
4507 5645 1.609208 GAGGAAAGAAGCACTGGCAA 58.391 50.000 0.00 0.00 44.61 4.52
4531 5669 5.298276 TGGTGTTCTGATGTCTTTAACAACC 59.702 40.000 0.00 0.00 42.37 3.77
4549 5687 8.903820 GCTGGATTAAGAATAAATACTGGTGTT 58.096 33.333 0.00 0.00 0.00 3.32
4617 5755 8.914328 TGACAATGCAACACAATAATAGAATG 57.086 30.769 0.00 0.00 0.00 2.67
4660 5798 6.274157 ACACATGTTGTACCTGAAACAAAA 57.726 33.333 0.00 0.00 39.57 2.44
4730 5868 4.823989 GGACTGCACTTGCTAATATCCAAT 59.176 41.667 2.33 0.00 42.66 3.16
4812 5950 1.815003 GACCCTGAAAGATGCAAGGTG 59.185 52.381 0.00 0.00 34.07 4.00
4818 5956 4.579869 TGTAAGAAGACCCTGAAAGATGC 58.420 43.478 0.00 0.00 34.07 3.91
4867 6030 2.484264 CAGTTCTTCCCTAAAACCTGCG 59.516 50.000 0.00 0.00 0.00 5.18
5114 6293 6.072008 CCAGATTATGGTCAACACAATTGTGA 60.072 38.462 38.30 19.58 45.38 3.58
5157 6340 5.250543 TGAGTCCTCATTAAACCCAGATCAA 59.749 40.000 0.00 0.00 34.14 2.57
5158 6341 4.782691 TGAGTCCTCATTAAACCCAGATCA 59.217 41.667 0.00 0.00 34.14 2.92
5160 6343 4.383118 CGTGAGTCCTCATTAAACCCAGAT 60.383 45.833 0.00 0.00 42.18 2.90
5200 6383 5.009110 TGGTGTAAAAATGAAGACATTCGCA 59.991 36.000 0.00 0.00 44.67 5.10
5201 6384 5.457140 TGGTGTAAAAATGAAGACATTCGC 58.543 37.500 0.00 0.00 44.67 4.70
5296 6484 5.416083 TCACTACTGTCATAATCGGTTTGG 58.584 41.667 0.00 0.00 0.00 3.28
5315 6503 7.490840 CATGACTGAAGACTGAGAATATCACT 58.509 38.462 0.00 0.00 33.22 3.41
5348 6544 6.038161 CCAGAATGATTAATGTTTCGCTGGTA 59.962 38.462 0.00 0.00 39.69 3.25
5352 6548 5.647658 TCACCAGAATGATTAATGTTTCGCT 59.352 36.000 0.00 0.00 39.69 4.93
5353 6549 5.879237 TCACCAGAATGATTAATGTTTCGC 58.121 37.500 0.00 0.00 39.69 4.70
5360 9383 8.790718 GTCTGCATATTCACCAGAATGATTAAT 58.209 33.333 1.21 0.00 44.03 1.40
5527 9550 7.881142 TGATACATCACCGTGAAAAGATTTTT 58.119 30.769 5.07 0.00 0.00 1.94
5528 9551 7.447374 TGATACATCACCGTGAAAAGATTTT 57.553 32.000 5.07 0.00 0.00 1.82
5717 9782 3.068165 CCTATGACTGCGAATAGTCCACA 59.932 47.826 10.93 0.00 45.07 4.17
5725 9790 1.123077 TGGCTCCTATGACTGCGAAT 58.877 50.000 0.00 0.00 0.00 3.34
5759 9824 6.051074 CACTGAAATTGGCTCCTTTCTTTTT 58.949 36.000 7.94 0.00 33.50 1.94
5760 9825 5.129320 ACACTGAAATTGGCTCCTTTCTTTT 59.871 36.000 7.94 0.00 33.50 2.27
5761 9826 4.651045 ACACTGAAATTGGCTCCTTTCTTT 59.349 37.500 7.94 0.00 33.50 2.52
5762 9827 4.218312 ACACTGAAATTGGCTCCTTTCTT 58.782 39.130 7.94 0.00 33.50 2.52
5763 9828 3.823304 GACACTGAAATTGGCTCCTTTCT 59.177 43.478 7.94 0.00 33.50 2.52
5764 9829 3.569701 TGACACTGAAATTGGCTCCTTTC 59.430 43.478 0.00 0.00 33.06 2.62
5765 9830 3.565307 TGACACTGAAATTGGCTCCTTT 58.435 40.909 0.00 0.00 0.00 3.11
5766 9831 3.228188 TGACACTGAAATTGGCTCCTT 57.772 42.857 0.00 0.00 0.00 3.36
5767 9832 2.957402 TGACACTGAAATTGGCTCCT 57.043 45.000 0.00 0.00 0.00 3.69
5768 9833 3.642705 GTTTGACACTGAAATTGGCTCC 58.357 45.455 0.00 0.00 0.00 4.70
5769 9834 3.300009 CGTTTGACACTGAAATTGGCTC 58.700 45.455 0.00 0.00 0.00 4.70
5770 9835 2.034558 CCGTTTGACACTGAAATTGGCT 59.965 45.455 0.00 0.00 0.00 4.75
5771 9836 2.034053 TCCGTTTGACACTGAAATTGGC 59.966 45.455 0.00 0.00 0.00 4.52
5772 9837 3.563808 TCTCCGTTTGACACTGAAATTGG 59.436 43.478 0.00 0.00 0.00 3.16
5773 9838 4.319766 CCTCTCCGTTTGACACTGAAATTG 60.320 45.833 0.00 0.00 0.00 2.32
5782 9847 1.613925 CTGACTCCTCTCCGTTTGACA 59.386 52.381 0.00 0.00 0.00 3.58
5785 9850 2.928731 GCTTCTGACTCCTCTCCGTTTG 60.929 54.545 0.00 0.00 0.00 2.93
5798 9863 4.836125 TTCACCAAAATCAGCTTCTGAC 57.164 40.909 0.00 0.00 43.63 3.51
5859 9930 7.832187 AGATCATTACACCCCGAAATCTTTTAA 59.168 33.333 0.00 0.00 0.00 1.52
5860 9931 7.343357 AGATCATTACACCCCGAAATCTTTTA 58.657 34.615 0.00 0.00 0.00 1.52
5861 9932 6.187682 AGATCATTACACCCCGAAATCTTTT 58.812 36.000 0.00 0.00 0.00 2.27
5862 9933 5.755849 AGATCATTACACCCCGAAATCTTT 58.244 37.500 0.00 0.00 0.00 2.52
5887 14200 9.811995 CTGCAGTTTTAAGGTGTGTACTATATA 57.188 33.333 5.25 0.00 0.00 0.86
5888 14201 8.319146 ACTGCAGTTTTAAGGTGTGTACTATAT 58.681 33.333 15.25 0.00 0.00 0.86
5889 14202 7.673180 ACTGCAGTTTTAAGGTGTGTACTATA 58.327 34.615 15.25 0.00 0.00 1.31
5890 14203 6.531021 ACTGCAGTTTTAAGGTGTGTACTAT 58.469 36.000 15.25 0.00 0.00 2.12
5992 14306 2.373836 TCAATGAAGGGGAAAGACCGAA 59.626 45.455 0.00 0.00 40.11 4.30
5993 14307 1.982226 TCAATGAAGGGGAAAGACCGA 59.018 47.619 0.00 0.00 40.11 4.69
5994 14308 2.027192 TCTCAATGAAGGGGAAAGACCG 60.027 50.000 0.00 0.00 40.11 4.79
5995 14309 3.264450 TCTCTCAATGAAGGGGAAAGACC 59.736 47.826 0.00 0.00 38.08 3.85
5996 14310 4.512484 CTCTCTCAATGAAGGGGAAAGAC 58.488 47.826 0.00 0.00 0.00 3.01
5997 14311 3.521126 CCTCTCTCAATGAAGGGGAAAGA 59.479 47.826 5.72 0.00 0.00 2.52
6000 14314 2.573462 CACCTCTCTCAATGAAGGGGAA 59.427 50.000 15.11 0.00 0.00 3.97
6001 14315 2.191400 CACCTCTCTCAATGAAGGGGA 58.809 52.381 15.11 0.00 0.00 4.81
6015 14330 3.474570 GAGCATCCCGCCACCTCT 61.475 66.667 0.00 0.00 44.04 3.69
6016 14331 3.785859 TGAGCATCCCGCCACCTC 61.786 66.667 0.00 0.00 44.04 3.85
6017 14332 4.101448 GTGAGCATCCCGCCACCT 62.101 66.667 0.00 0.00 44.04 4.00
6060 14375 6.264518 TCATGTAGTTCGATACTGCCATAAGA 59.735 38.462 9.58 5.22 38.57 2.10
6105 14429 1.196808 CTTAACACCATGTGACGCCAC 59.803 52.381 0.00 0.00 43.46 5.01
6106 14430 1.070914 TCTTAACACCATGTGACGCCA 59.929 47.619 0.49 0.00 36.96 5.69
6107 14431 1.803334 TCTTAACACCATGTGACGCC 58.197 50.000 0.49 0.00 36.96 5.68
6108 14432 2.742053 ACATCTTAACACCATGTGACGC 59.258 45.455 0.49 0.00 36.96 5.19
6109 14433 3.993736 TGACATCTTAACACCATGTGACG 59.006 43.478 0.49 0.00 36.96 4.35
6150 14476 9.458727 TTTCATCTCTCTTCTCATGCTTAAATT 57.541 29.630 0.00 0.00 0.00 1.82
6178 14504 5.243954 GGTTGGCCTCTGAAATTTATATCCC 59.756 44.000 3.32 0.00 0.00 3.85
6183 14509 4.399303 CGAAGGTTGGCCTCTGAAATTTAT 59.601 41.667 3.32 0.00 46.33 1.40
6184 14510 3.756434 CGAAGGTTGGCCTCTGAAATTTA 59.244 43.478 3.32 0.00 46.33 1.40
6200 14530 0.252375 TTGGCCCTAGGTACGAAGGT 60.252 55.000 8.29 0.00 35.10 3.50
6222 14552 6.884836 ACTATTAAAGCTCTACCCCTTTGTTG 59.115 38.462 0.00 0.00 33.64 3.33
6223 14553 7.029053 ACTATTAAAGCTCTACCCCTTTGTT 57.971 36.000 0.00 0.00 33.64 2.83
6224 14554 6.638021 ACTATTAAAGCTCTACCCCTTTGT 57.362 37.500 0.00 0.00 33.64 2.83
6225 14555 6.318900 CCAACTATTAAAGCTCTACCCCTTTG 59.681 42.308 0.00 0.00 33.64 2.77
6245 14575 8.918202 TGTGTTCTTATTTGAATCTACCAACT 57.082 30.769 0.00 0.00 0.00 3.16
6332 16079 4.934356 TGCTTCCAAATCCTAGGATGTTT 58.066 39.130 25.20 14.36 34.70 2.83
6333 16080 4.591321 TGCTTCCAAATCCTAGGATGTT 57.409 40.909 25.20 16.97 34.70 2.71
6356 16103 3.201266 ACCTTCGGTGCTTATAAATCCCA 59.799 43.478 0.00 0.00 32.98 4.37
6383 16131 1.071699 TGGGAGCAACTACAACCTCAC 59.928 52.381 0.00 0.00 0.00 3.51
6398 16146 1.875576 GCGGATGCTGTATCTTGGGAG 60.876 57.143 5.72 0.00 38.39 4.30
6399 16147 0.106708 GCGGATGCTGTATCTTGGGA 59.893 55.000 5.72 0.00 38.39 4.37
6400 16148 1.224069 CGCGGATGCTGTATCTTGGG 61.224 60.000 0.00 4.02 39.65 4.12
6401 16149 1.835483 GCGCGGATGCTGTATCTTGG 61.835 60.000 8.83 0.00 39.65 3.61
6402 16150 1.566563 GCGCGGATGCTGTATCTTG 59.433 57.895 8.83 0.79 39.65 3.02
6403 16151 1.951130 CGCGCGGATGCTGTATCTT 60.951 57.895 24.84 0.00 39.65 2.40
6404 16152 2.355126 CGCGCGGATGCTGTATCT 60.355 61.111 24.84 0.00 39.65 1.98
6405 16153 4.064491 GCGCGCGGATGCTGTATC 62.064 66.667 33.06 6.44 39.65 2.24
6417 16165 4.210304 GATCACAAGGACGCGCGC 62.210 66.667 32.58 23.91 0.00 6.86
6418 16166 1.896339 TTTGATCACAAGGACGCGCG 61.896 55.000 30.96 30.96 37.32 6.86
6419 16167 0.452784 GTTTGATCACAAGGACGCGC 60.453 55.000 5.73 0.00 37.32 6.86
6420 16168 0.179250 CGTTTGATCACAAGGACGCG 60.179 55.000 3.53 3.53 34.88 6.01
6421 16169 3.657537 CGTTTGATCACAAGGACGC 57.342 52.632 0.00 0.00 34.88 5.19
6422 16170 0.179250 CGCGTTTGATCACAAGGACG 60.179 55.000 0.00 2.80 40.75 4.79
6423 16171 0.452784 GCGCGTTTGATCACAAGGAC 60.453 55.000 8.43 0.00 37.32 3.85
6424 16172 0.882484 TGCGCGTTTGATCACAAGGA 60.882 50.000 8.43 0.00 37.32 3.36
6425 16173 0.725784 GTGCGCGTTTGATCACAAGG 60.726 55.000 8.43 0.74 37.32 3.61
6426 16174 0.725784 GGTGCGCGTTTGATCACAAG 60.726 55.000 8.43 0.00 37.32 3.16
6427 16175 1.281353 GGTGCGCGTTTGATCACAA 59.719 52.632 8.43 0.00 0.00 3.33
6428 16176 2.612567 GGGTGCGCGTTTGATCACA 61.613 57.895 8.43 0.00 0.00 3.58
6429 16177 2.175811 GGGTGCGCGTTTGATCAC 59.824 61.111 8.43 5.80 0.00 3.06
6430 16178 2.031919 AGGGTGCGCGTTTGATCA 59.968 55.556 8.43 0.00 0.00 2.92
6431 16179 2.032634 TGAGGGTGCGCGTTTGATC 61.033 57.895 8.43 1.66 0.00 2.92
6432 16180 2.031919 TGAGGGTGCGCGTTTGAT 59.968 55.556 8.43 0.00 0.00 2.57
6433 16181 2.933878 AAGTGAGGGTGCGCGTTTGA 62.934 55.000 8.43 0.00 0.00 2.69
6434 16182 2.542907 AAGTGAGGGTGCGCGTTTG 61.543 57.895 8.43 0.00 0.00 2.93
6435 16183 2.203153 AAGTGAGGGTGCGCGTTT 60.203 55.556 8.43 0.00 0.00 3.60
6436 16184 2.972505 CAAGTGAGGGTGCGCGTT 60.973 61.111 8.43 0.00 0.00 4.84
6437 16185 4.988598 CCAAGTGAGGGTGCGCGT 62.989 66.667 8.43 0.00 0.00 6.01
6445 16193 2.347490 CCCACGACCCAAGTGAGG 59.653 66.667 0.00 0.00 41.83 3.86
6446 16194 2.358737 GCCCACGACCCAAGTGAG 60.359 66.667 0.00 0.00 41.83 3.51
6447 16195 2.391724 GAAGCCCACGACCCAAGTGA 62.392 60.000 0.00 0.00 41.83 3.41
6448 16196 1.966451 GAAGCCCACGACCCAAGTG 60.966 63.158 0.00 0.00 39.19 3.16
6449 16197 1.779061 ATGAAGCCCACGACCCAAGT 61.779 55.000 0.00 0.00 0.00 3.16
6450 16198 0.609131 AATGAAGCCCACGACCCAAG 60.609 55.000 0.00 0.00 0.00 3.61
6451 16199 0.608035 GAATGAAGCCCACGACCCAA 60.608 55.000 0.00 0.00 0.00 4.12
6452 16200 1.002624 GAATGAAGCCCACGACCCA 60.003 57.895 0.00 0.00 0.00 4.51
6453 16201 1.002624 TGAATGAAGCCCACGACCC 60.003 57.895 0.00 0.00 0.00 4.46
6454 16202 0.321653 ACTGAATGAAGCCCACGACC 60.322 55.000 0.00 0.00 0.00 4.79
6455 16203 1.079503 GACTGAATGAAGCCCACGAC 58.920 55.000 0.00 0.00 0.00 4.34
6456 16204 0.389817 CGACTGAATGAAGCCCACGA 60.390 55.000 0.00 0.00 0.00 4.35
6457 16205 1.970917 GCGACTGAATGAAGCCCACG 61.971 60.000 0.00 0.00 0.00 4.94
6458 16206 1.796796 GCGACTGAATGAAGCCCAC 59.203 57.895 0.00 0.00 0.00 4.61
6459 16207 1.741401 CGCGACTGAATGAAGCCCA 60.741 57.895 0.00 0.00 0.00 5.36
6460 16208 2.464459 CCGCGACTGAATGAAGCCC 61.464 63.158 8.23 0.00 0.00 5.19
6461 16209 3.093278 CCGCGACTGAATGAAGCC 58.907 61.111 8.23 0.00 0.00 4.35
6462 16210 2.401195 GCCGCGACTGAATGAAGC 59.599 61.111 8.23 0.00 0.00 3.86
6463 16211 2.464459 GGGCCGCGACTGAATGAAG 61.464 63.158 8.23 0.00 0.00 3.02
6464 16212 2.435938 GGGCCGCGACTGAATGAA 60.436 61.111 8.23 0.00 0.00 2.57
6465 16213 3.030168 ATGGGCCGCGACTGAATGA 62.030 57.895 8.23 0.00 0.00 2.57
6466 16214 2.514592 ATGGGCCGCGACTGAATG 60.515 61.111 8.23 0.00 0.00 2.67
6467 16215 1.966901 TACATGGGCCGCGACTGAAT 61.967 55.000 8.23 0.00 0.00 2.57
6468 16216 2.572095 CTACATGGGCCGCGACTGAA 62.572 60.000 8.23 0.00 0.00 3.02
6469 16217 3.071837 TACATGGGCCGCGACTGA 61.072 61.111 8.23 0.00 0.00 3.41
6470 16218 2.586079 CTACATGGGCCGCGACTG 60.586 66.667 8.23 0.00 0.00 3.51
6471 16219 3.075005 ACTACATGGGCCGCGACT 61.075 61.111 8.23 0.00 0.00 4.18
6472 16220 2.890474 CACTACATGGGCCGCGAC 60.890 66.667 8.23 0.00 0.00 5.19
6473 16221 4.830765 GCACTACATGGGCCGCGA 62.831 66.667 8.23 0.00 39.71 5.87
6479 16227 0.833287 ACCTAGCAGCACTACATGGG 59.167 55.000 0.00 0.00 0.00 4.00
6480 16228 1.945387 CACCTAGCAGCACTACATGG 58.055 55.000 0.00 0.00 0.00 3.66
6481 16229 1.293924 GCACCTAGCAGCACTACATG 58.706 55.000 0.00 0.00 44.79 3.21
6482 16230 3.768633 GCACCTAGCAGCACTACAT 57.231 52.632 0.00 0.00 44.79 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.