Multiple sequence alignment - TraesCS1A01G033700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G033700 chr1A 100.000 3710 0 0 1 3710 16424341 16428050 0.000000e+00 6852.0
1 TraesCS1A01G033700 chr1A 100.000 570 0 0 3955 4524 16428295 16428864 0.000000e+00 1053.0
2 TraesCS1A01G033700 chr1D 93.326 1948 75 26 731 2644 15337593 15339519 0.000000e+00 2826.0
3 TraesCS1A01G033700 chr1D 89.118 1020 86 13 2702 3707 15345768 15346776 0.000000e+00 1245.0
4 TraesCS1A01G033700 chr1D 89.840 935 83 9 2736 3662 15339536 15340466 0.000000e+00 1190.0
5 TraesCS1A01G033700 chr1D 89.655 580 47 8 3955 4524 15346796 15347372 0.000000e+00 726.0
6 TraesCS1A01G033700 chr1D 91.045 134 8 2 530 662 15337477 15337607 1.290000e-40 178.0
7 TraesCS1A01G033700 chr1D 85.714 168 23 1 338 504 15337311 15337478 4.650000e-40 176.0
8 TraesCS1A01G033700 chr1D 90.816 98 7 2 663 759 437574221 437574317 3.670000e-26 130.0
9 TraesCS1A01G033700 chr1D 91.667 48 4 0 277 324 72883424 72883377 2.920000e-07 67.6
10 TraesCS1A01G033700 chr1B 90.825 1940 91 46 752 2659 22049038 22047154 0.000000e+00 2516.0
11 TraesCS1A01G033700 chr1B 89.093 981 87 7 2736 3706 22043144 22042174 0.000000e+00 1201.0
12 TraesCS1A01G033700 chr1B 89.625 906 80 9 2736 3630 22047155 22046253 0.000000e+00 1140.0
13 TraesCS1A01G033700 chr1B 89.157 581 48 7 3956 4524 22042146 22041569 0.000000e+00 710.0
14 TraesCS1A01G033700 chr1B 90.120 334 26 4 334 660 22050114 22049781 1.160000e-115 427.0
15 TraesCS1A01G033700 chr1B 88.980 245 12 6 2419 2663 22043365 22043136 5.730000e-74 289.0
16 TraesCS1A01G033700 chr1B 91.579 95 8 0 661 755 142723544 142723450 1.020000e-26 132.0
17 TraesCS1A01G033700 chr1B 94.118 85 5 0 664 748 598878312 598878396 3.670000e-26 130.0
18 TraesCS1A01G033700 chr1B 97.143 35 1 0 2661 2695 424216078 424216112 4.890000e-05 60.2
19 TraesCS1A01G033700 chr5B 90.566 159 15 0 1776 1934 660669813 660669655 1.280000e-50 211.0
20 TraesCS1A01G033700 chr5B 91.489 94 6 2 663 755 687805604 687805696 1.320000e-25 128.0
21 TraesCS1A01G033700 chr5B 97.222 36 1 0 2657 2692 394001902 394001937 1.360000e-05 62.1
22 TraesCS1A01G033700 chr5D 89.937 159 16 0 1776 1934 525985338 525985180 5.930000e-49 206.0
23 TraesCS1A01G033700 chr5A 89.937 159 16 0 1776 1934 653001613 653001455 5.930000e-49 206.0
24 TraesCS1A01G033700 chr6B 93.407 91 5 1 659 748 115045675 115045765 2.840000e-27 134.0
25 TraesCS1A01G033700 chr6B 92.308 91 6 1 659 748 339353641 339353731 1.320000e-25 128.0
26 TraesCS1A01G033700 chr7D 94.118 85 5 0 664 748 75270809 75270893 3.670000e-26 130.0
27 TraesCS1A01G033700 chr7A 94.118 85 5 0 664 748 118399602 118399518 3.670000e-26 130.0
28 TraesCS1A01G033700 chr7A 93.182 88 6 0 664 751 616935457 616935544 3.670000e-26 130.0
29 TraesCS1A01G033700 chr2A 97.619 42 1 0 282 323 65814875 65814834 6.280000e-09 73.1
30 TraesCS1A01G033700 chr2A 95.238 42 2 0 282 323 384230354 384230395 2.920000e-07 67.6
31 TraesCS1A01G033700 chr2A 95.238 42 2 0 282 323 607603969 607604010 2.920000e-07 67.6
32 TraesCS1A01G033700 chr2A 91.667 48 3 1 277 323 419654487 419654440 1.050000e-06 65.8
33 TraesCS1A01G033700 chr4A 95.455 44 2 0 281 324 36670737 36670694 2.260000e-08 71.3
34 TraesCS1A01G033700 chr4A 92.157 51 3 1 274 323 604837674 604837624 2.260000e-08 71.3
35 TraesCS1A01G033700 chr4B 95.349 43 2 0 281 323 600659493 600659535 8.120000e-08 69.4
36 TraesCS1A01G033700 chr3B 93.333 45 3 0 279 323 771996827 771996871 2.920000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G033700 chr1A 16424341 16428864 4523 False 3952.500000 6852 100.000000 1 4524 2 chr1A.!!$F1 4523
1 TraesCS1A01G033700 chr1D 15337311 15340466 3155 False 1092.500000 2826 89.981250 338 3662 4 chr1D.!!$F2 3324
2 TraesCS1A01G033700 chr1D 15345768 15347372 1604 False 985.500000 1245 89.386500 2702 4524 2 chr1D.!!$F3 1822
3 TraesCS1A01G033700 chr1B 22041569 22050114 8545 True 1047.166667 2516 89.633333 334 4524 6 chr1B.!!$R2 4190

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
103 104 0.037419 GCGGGTGTTTGATTGCCAAT 60.037 50.000 0.0 0.0 34.23 3.16 F
178 179 0.249280 GAAAACGGCAACCAACCTGG 60.249 55.000 0.0 0.0 45.02 4.45 F
233 234 0.326264 GGGCTTCTCAGCTTCTTCCA 59.674 55.000 0.0 0.0 46.44 3.53 F
234 235 1.064832 GGGCTTCTCAGCTTCTTCCAT 60.065 52.381 0.0 0.0 46.44 3.41 F
492 498 2.159296 CGACACATTGTATCTCCCACGA 60.159 50.000 0.0 0.0 0.00 4.35 F
2262 3058 0.176680 ACCTCACCAGCGTCATCATC 59.823 55.000 0.0 0.0 0.00 2.92 F
3309 4119 0.038166 TGGGGTTCCATGAGTTGCTC 59.962 55.000 0.0 0.0 38.32 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1536 2305 0.039074 CGTAGAGGTCCGCCATGATC 60.039 60.000 0.00 0.00 37.19 2.92 R
1942 2729 1.006805 CGTCGGGCAGAGGATCATC 60.007 63.158 0.00 0.00 37.82 2.92 R
1985 2775 1.947146 CCGTTGCACGACGAAGACA 60.947 57.895 12.38 0.00 46.05 3.41 R
1989 2779 3.334751 CTGCCGTTGCACGACGAA 61.335 61.111 12.38 0.03 46.05 3.85 R
2431 3227 3.193263 CAGAAGAGGGTGTTCGATCATG 58.807 50.000 0.00 0.00 0.00 3.07 R
3316 4126 0.611062 TGTCGTCGATCCCCTTGTCT 60.611 55.000 0.00 0.00 0.00 3.41 R
4178 8999 3.081061 TGTGACTTGACTTTGTGCAACT 58.919 40.909 0.00 0.00 38.04 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.761235 CTCAATGTGTTGATCTTGCACT 57.239 40.909 13.16 1.34 43.08 4.40
22 23 4.473199 CTCAATGTGTTGATCTTGCACTG 58.527 43.478 13.16 6.93 43.08 3.66
23 24 3.884693 TCAATGTGTTGATCTTGCACTGT 59.115 39.130 13.16 3.54 39.36 3.55
24 25 4.338964 TCAATGTGTTGATCTTGCACTGTT 59.661 37.500 13.16 7.69 39.36 3.16
25 26 5.530543 TCAATGTGTTGATCTTGCACTGTTA 59.469 36.000 13.16 0.00 39.36 2.41
26 27 6.207221 TCAATGTGTTGATCTTGCACTGTTAT 59.793 34.615 13.16 0.71 39.36 1.89
27 28 7.390162 TCAATGTGTTGATCTTGCACTGTTATA 59.610 33.333 13.16 0.00 39.36 0.98
28 29 7.686438 ATGTGTTGATCTTGCACTGTTATAA 57.314 32.000 13.16 0.00 34.52 0.98
29 30 7.686438 TGTGTTGATCTTGCACTGTTATAAT 57.314 32.000 13.16 0.00 34.52 1.28
30 31 8.109705 TGTGTTGATCTTGCACTGTTATAATT 57.890 30.769 13.16 0.00 34.52 1.40
31 32 8.022550 TGTGTTGATCTTGCACTGTTATAATTG 58.977 33.333 13.16 0.00 34.52 2.32
32 33 8.023128 GTGTTGATCTTGCACTGTTATAATTGT 58.977 33.333 0.00 0.00 0.00 2.71
33 34 8.236586 TGTTGATCTTGCACTGTTATAATTGTC 58.763 33.333 0.00 0.00 0.00 3.18
34 35 7.320443 TGATCTTGCACTGTTATAATTGTCC 57.680 36.000 0.00 0.00 0.00 4.02
35 36 6.883756 TGATCTTGCACTGTTATAATTGTCCA 59.116 34.615 0.00 0.00 0.00 4.02
36 37 6.494893 TCTTGCACTGTTATAATTGTCCAC 57.505 37.500 0.00 0.00 0.00 4.02
37 38 6.000840 TCTTGCACTGTTATAATTGTCCACA 58.999 36.000 0.00 0.00 0.00 4.17
38 39 5.621197 TGCACTGTTATAATTGTCCACAC 57.379 39.130 0.00 0.00 0.00 3.82
39 40 4.153296 TGCACTGTTATAATTGTCCACACG 59.847 41.667 0.00 0.00 0.00 4.49
40 41 4.153475 GCACTGTTATAATTGTCCACACGT 59.847 41.667 0.00 0.00 0.00 4.49
41 42 5.334569 GCACTGTTATAATTGTCCACACGTT 60.335 40.000 0.00 0.00 0.00 3.99
42 43 6.128499 GCACTGTTATAATTGTCCACACGTTA 60.128 38.462 0.00 0.00 0.00 3.18
43 44 7.413657 GCACTGTTATAATTGTCCACACGTTAT 60.414 37.037 0.00 3.38 0.00 1.89
44 45 9.089601 CACTGTTATAATTGTCCACACGTTATA 57.910 33.333 0.00 2.02 0.00 0.98
45 46 9.826574 ACTGTTATAATTGTCCACACGTTATAT 57.173 29.630 0.00 0.00 0.00 0.86
48 49 9.872757 GTTATAATTGTCCACACGTTATATTGG 57.127 33.333 0.00 0.00 0.00 3.16
49 50 4.893424 ATTGTCCACACGTTATATTGGC 57.107 40.909 0.00 0.00 0.00 4.52
50 51 3.620427 TGTCCACACGTTATATTGGCT 57.380 42.857 0.00 0.00 0.00 4.75
51 52 3.527533 TGTCCACACGTTATATTGGCTC 58.472 45.455 0.00 0.00 0.00 4.70
52 53 3.196901 TGTCCACACGTTATATTGGCTCT 59.803 43.478 0.00 0.00 0.00 4.09
53 54 4.403113 TGTCCACACGTTATATTGGCTCTA 59.597 41.667 0.00 0.00 0.00 2.43
54 55 4.743644 GTCCACACGTTATATTGGCTCTAC 59.256 45.833 0.00 0.00 0.00 2.59
55 56 4.647853 TCCACACGTTATATTGGCTCTACT 59.352 41.667 0.00 0.00 0.00 2.57
56 57 4.982916 CCACACGTTATATTGGCTCTACTC 59.017 45.833 0.00 0.00 0.00 2.59
57 58 5.451381 CCACACGTTATATTGGCTCTACTCA 60.451 44.000 0.00 0.00 0.00 3.41
58 59 6.216569 CACACGTTATATTGGCTCTACTCAT 58.783 40.000 0.00 0.00 0.00 2.90
59 60 6.701841 CACACGTTATATTGGCTCTACTCATT 59.298 38.462 0.00 0.00 0.00 2.57
60 61 6.924060 ACACGTTATATTGGCTCTACTCATTC 59.076 38.462 0.00 0.00 0.00 2.67
61 62 7.148641 CACGTTATATTGGCTCTACTCATTCT 58.851 38.462 0.00 0.00 0.00 2.40
62 63 7.327275 CACGTTATATTGGCTCTACTCATTCTC 59.673 40.741 0.00 0.00 0.00 2.87
63 64 7.014326 ACGTTATATTGGCTCTACTCATTCTCA 59.986 37.037 0.00 0.00 0.00 3.27
64 65 7.327275 CGTTATATTGGCTCTACTCATTCTCAC 59.673 40.741 0.00 0.00 0.00 3.51
65 66 3.895232 TTGGCTCTACTCATTCTCACC 57.105 47.619 0.00 0.00 0.00 4.02
66 67 3.107402 TGGCTCTACTCATTCTCACCT 57.893 47.619 0.00 0.00 0.00 4.00
67 68 3.027412 TGGCTCTACTCATTCTCACCTC 58.973 50.000 0.00 0.00 0.00 3.85
68 69 3.027412 GGCTCTACTCATTCTCACCTCA 58.973 50.000 0.00 0.00 0.00 3.86
69 70 3.640967 GGCTCTACTCATTCTCACCTCAT 59.359 47.826 0.00 0.00 0.00 2.90
70 71 4.100808 GGCTCTACTCATTCTCACCTCATT 59.899 45.833 0.00 0.00 0.00 2.57
71 72 5.288804 GCTCTACTCATTCTCACCTCATTC 58.711 45.833 0.00 0.00 0.00 2.67
72 73 5.068987 GCTCTACTCATTCTCACCTCATTCT 59.931 44.000 0.00 0.00 0.00 2.40
73 74 6.264292 GCTCTACTCATTCTCACCTCATTCTA 59.736 42.308 0.00 0.00 0.00 2.10
74 75 7.039784 GCTCTACTCATTCTCACCTCATTCTAT 60.040 40.741 0.00 0.00 0.00 1.98
75 76 8.402798 TCTACTCATTCTCACCTCATTCTATC 57.597 38.462 0.00 0.00 0.00 2.08
76 77 6.418057 ACTCATTCTCACCTCATTCTATCC 57.582 41.667 0.00 0.00 0.00 2.59
77 78 5.306678 ACTCATTCTCACCTCATTCTATCCC 59.693 44.000 0.00 0.00 0.00 3.85
78 79 5.218959 TCATTCTCACCTCATTCTATCCCA 58.781 41.667 0.00 0.00 0.00 4.37
79 80 5.848369 TCATTCTCACCTCATTCTATCCCAT 59.152 40.000 0.00 0.00 0.00 4.00
80 81 5.557576 TTCTCACCTCATTCTATCCCATG 57.442 43.478 0.00 0.00 0.00 3.66
81 82 3.326006 TCTCACCTCATTCTATCCCATGC 59.674 47.826 0.00 0.00 0.00 4.06
82 83 3.047857 TCACCTCATTCTATCCCATGCA 58.952 45.455 0.00 0.00 0.00 3.96
83 84 3.654321 TCACCTCATTCTATCCCATGCAT 59.346 43.478 0.00 0.00 0.00 3.96
84 85 3.756963 CACCTCATTCTATCCCATGCATG 59.243 47.826 20.19 20.19 0.00 4.06
85 86 2.753452 CCTCATTCTATCCCATGCATGC 59.247 50.000 21.69 11.82 0.00 4.06
86 87 2.418976 CTCATTCTATCCCATGCATGCG 59.581 50.000 21.69 13.41 0.00 4.73
87 88 1.471287 CATTCTATCCCATGCATGCGG 59.529 52.381 21.69 21.70 0.00 5.69
88 89 0.250858 TTCTATCCCATGCATGCGGG 60.251 55.000 25.08 21.34 44.60 6.13
89 90 1.073722 CTATCCCATGCATGCGGGT 59.926 57.895 24.83 22.50 43.57 5.28
90 91 1.228215 TATCCCATGCATGCGGGTG 60.228 57.895 24.83 17.46 43.57 4.61
91 92 1.993701 TATCCCATGCATGCGGGTGT 61.994 55.000 24.83 18.31 43.57 4.16
92 93 2.859525 ATCCCATGCATGCGGGTGTT 62.860 55.000 24.83 12.13 43.57 3.32
93 94 2.648143 CCCATGCATGCGGGTGTTT 61.648 57.895 21.69 0.00 37.70 2.83
94 95 1.446445 CCATGCATGCGGGTGTTTG 60.446 57.895 21.69 0.10 0.00 2.93
95 96 1.585517 CATGCATGCGGGTGTTTGA 59.414 52.632 14.93 0.00 0.00 2.69
96 97 0.173935 CATGCATGCGGGTGTTTGAT 59.826 50.000 14.93 0.00 0.00 2.57
97 98 0.896923 ATGCATGCGGGTGTTTGATT 59.103 45.000 14.09 0.00 0.00 2.57
98 99 0.038435 TGCATGCGGGTGTTTGATTG 60.038 50.000 14.09 0.00 0.00 2.67
99 100 1.353609 GCATGCGGGTGTTTGATTGC 61.354 55.000 0.00 0.00 0.00 3.56
100 101 0.737019 CATGCGGGTGTTTGATTGCC 60.737 55.000 0.00 0.00 0.00 4.52
101 102 1.184322 ATGCGGGTGTTTGATTGCCA 61.184 50.000 0.00 0.00 0.00 4.92
102 103 1.365633 GCGGGTGTTTGATTGCCAA 59.634 52.632 0.00 0.00 0.00 4.52
103 104 0.037419 GCGGGTGTTTGATTGCCAAT 60.037 50.000 0.00 0.00 34.23 3.16
104 105 1.607767 GCGGGTGTTTGATTGCCAATT 60.608 47.619 0.00 0.00 34.23 2.32
105 106 2.765122 CGGGTGTTTGATTGCCAATTT 58.235 42.857 0.00 0.00 34.23 1.82
106 107 2.479656 CGGGTGTTTGATTGCCAATTTG 59.520 45.455 0.00 0.00 34.23 2.32
107 108 2.226200 GGGTGTTTGATTGCCAATTTGC 59.774 45.455 0.00 0.00 34.23 3.68
108 109 2.226200 GGTGTTTGATTGCCAATTTGCC 59.774 45.455 0.00 0.00 34.23 4.52
109 110 2.877168 GTGTTTGATTGCCAATTTGCCA 59.123 40.909 0.00 0.00 34.23 4.92
110 111 3.502979 GTGTTTGATTGCCAATTTGCCAT 59.497 39.130 0.00 0.00 34.23 4.40
111 112 3.502595 TGTTTGATTGCCAATTTGCCATG 59.497 39.130 0.00 0.00 34.23 3.66
112 113 1.740297 TGATTGCCAATTTGCCATGC 58.260 45.000 0.00 0.00 0.00 4.06
113 114 1.003233 TGATTGCCAATTTGCCATGCA 59.997 42.857 0.00 0.00 36.47 3.96
114 115 2.294074 GATTGCCAATTTGCCATGCAT 58.706 42.857 0.00 0.00 38.76 3.96
115 116 1.454201 TTGCCAATTTGCCATGCATG 58.546 45.000 20.19 20.19 38.76 4.06
116 117 1.027255 TGCCAATTTGCCATGCATGC 61.027 50.000 21.69 11.82 38.76 4.06
117 118 1.027255 GCCAATTTGCCATGCATGCA 61.027 50.000 25.04 25.04 38.76 3.96
118 119 0.730265 CCAATTTGCCATGCATGCAC 59.270 50.000 25.37 15.25 38.76 4.57
119 120 0.371989 CAATTTGCCATGCATGCACG 59.628 50.000 25.37 16.18 38.76 5.34
120 121 1.363145 AATTTGCCATGCATGCACGC 61.363 50.000 25.37 26.32 38.76 5.34
121 122 4.780186 TTGCCATGCATGCACGCG 62.780 61.111 25.37 14.44 38.76 6.01
123 124 4.899687 GCCATGCATGCACGCGAG 62.900 66.667 25.37 5.97 33.35 5.03
124 125 3.197092 CCATGCATGCACGCGAGA 61.197 61.111 25.37 0.00 33.35 4.04
125 126 2.752939 CCATGCATGCACGCGAGAA 61.753 57.895 25.37 0.00 33.35 2.87
126 127 1.297378 CATGCATGCACGCGAGAAG 60.297 57.895 25.37 1.78 33.35 2.85
127 128 2.466982 ATGCATGCACGCGAGAAGG 61.467 57.895 25.37 0.92 33.35 3.46
128 129 4.527157 GCATGCACGCGAGAAGGC 62.527 66.667 15.93 10.03 0.00 4.35
138 139 1.922570 GCGAGAAGGCGAGTAATTGA 58.077 50.000 0.00 0.00 0.00 2.57
139 140 1.855360 GCGAGAAGGCGAGTAATTGAG 59.145 52.381 0.00 0.00 0.00 3.02
140 141 2.479730 GCGAGAAGGCGAGTAATTGAGA 60.480 50.000 0.00 0.00 0.00 3.27
141 142 3.367607 CGAGAAGGCGAGTAATTGAGAG 58.632 50.000 0.00 0.00 0.00 3.20
142 143 3.181495 CGAGAAGGCGAGTAATTGAGAGT 60.181 47.826 0.00 0.00 0.00 3.24
143 144 4.109050 GAGAAGGCGAGTAATTGAGAGTG 58.891 47.826 0.00 0.00 0.00 3.51
144 145 2.969628 AGGCGAGTAATTGAGAGTGG 57.030 50.000 0.00 0.00 0.00 4.00
145 146 1.482593 AGGCGAGTAATTGAGAGTGGG 59.517 52.381 0.00 0.00 0.00 4.61
146 147 1.207329 GGCGAGTAATTGAGAGTGGGT 59.793 52.381 0.00 0.00 0.00 4.51
147 148 2.429610 GGCGAGTAATTGAGAGTGGGTA 59.570 50.000 0.00 0.00 0.00 3.69
148 149 3.491104 GGCGAGTAATTGAGAGTGGGTAG 60.491 52.174 0.00 0.00 0.00 3.18
149 150 3.130693 GCGAGTAATTGAGAGTGGGTAGT 59.869 47.826 0.00 0.00 0.00 2.73
150 151 4.337555 GCGAGTAATTGAGAGTGGGTAGTA 59.662 45.833 0.00 0.00 0.00 1.82
151 152 5.505985 GCGAGTAATTGAGAGTGGGTAGTAG 60.506 48.000 0.00 0.00 0.00 2.57
152 153 5.505985 CGAGTAATTGAGAGTGGGTAGTAGC 60.506 48.000 0.00 0.00 0.00 3.58
153 154 5.269991 AGTAATTGAGAGTGGGTAGTAGCA 58.730 41.667 1.13 0.00 0.00 3.49
154 155 4.744795 AATTGAGAGTGGGTAGTAGCAG 57.255 45.455 1.13 0.00 0.00 4.24
155 156 3.451402 TTGAGAGTGGGTAGTAGCAGA 57.549 47.619 1.13 0.00 0.00 4.26
156 157 3.671740 TGAGAGTGGGTAGTAGCAGAT 57.328 47.619 1.13 0.00 0.00 2.90
157 158 3.982516 TGAGAGTGGGTAGTAGCAGATT 58.017 45.455 1.13 0.00 0.00 2.40
158 159 4.353777 TGAGAGTGGGTAGTAGCAGATTT 58.646 43.478 1.13 0.00 0.00 2.17
159 160 4.160439 TGAGAGTGGGTAGTAGCAGATTTG 59.840 45.833 1.13 0.00 0.00 2.32
160 161 4.353777 AGAGTGGGTAGTAGCAGATTTGA 58.646 43.478 1.13 0.00 0.00 2.69
161 162 4.777896 AGAGTGGGTAGTAGCAGATTTGAA 59.222 41.667 1.13 0.00 0.00 2.69
162 163 5.248477 AGAGTGGGTAGTAGCAGATTTGAAA 59.752 40.000 1.13 0.00 0.00 2.69
163 164 5.876357 AGTGGGTAGTAGCAGATTTGAAAA 58.124 37.500 1.13 0.00 0.00 2.29
164 165 5.705905 AGTGGGTAGTAGCAGATTTGAAAAC 59.294 40.000 1.13 0.00 0.00 2.43
165 166 4.693566 TGGGTAGTAGCAGATTTGAAAACG 59.306 41.667 1.13 0.00 0.00 3.60
166 167 4.094442 GGGTAGTAGCAGATTTGAAAACGG 59.906 45.833 1.13 0.00 0.00 4.44
167 168 3.831715 AGTAGCAGATTTGAAAACGGC 57.168 42.857 2.39 2.39 0.00 5.68
168 169 3.146066 AGTAGCAGATTTGAAAACGGCA 58.854 40.909 12.07 0.00 0.00 5.69
169 170 3.568007 AGTAGCAGATTTGAAAACGGCAA 59.432 39.130 12.07 0.00 0.00 4.52
170 171 2.742774 AGCAGATTTGAAAACGGCAAC 58.257 42.857 12.07 0.00 0.00 4.17
171 172 1.792367 GCAGATTTGAAAACGGCAACC 59.208 47.619 5.54 0.00 0.00 3.77
172 173 2.801342 GCAGATTTGAAAACGGCAACCA 60.801 45.455 5.54 0.00 0.00 3.67
173 174 3.452474 CAGATTTGAAAACGGCAACCAA 58.548 40.909 0.00 0.00 0.00 3.67
174 175 3.245048 CAGATTTGAAAACGGCAACCAAC 59.755 43.478 0.00 0.00 0.00 3.77
175 176 2.011540 TTTGAAAACGGCAACCAACC 57.988 45.000 0.00 0.00 0.00 3.77
176 177 1.187087 TTGAAAACGGCAACCAACCT 58.813 45.000 0.00 0.00 0.00 3.50
177 178 0.457851 TGAAAACGGCAACCAACCTG 59.542 50.000 0.00 0.00 0.00 4.00
178 179 0.249280 GAAAACGGCAACCAACCTGG 60.249 55.000 0.00 0.00 45.02 4.45
179 180 0.684805 AAAACGGCAACCAACCTGGA 60.685 50.000 0.00 0.00 40.96 3.86
180 181 0.684805 AAACGGCAACCAACCTGGAA 60.685 50.000 0.00 0.00 40.96 3.53
181 182 0.684805 AACGGCAACCAACCTGGAAA 60.685 50.000 0.00 0.00 40.96 3.13
182 183 0.684805 ACGGCAACCAACCTGGAAAA 60.685 50.000 0.00 0.00 40.96 2.29
183 184 0.461961 CGGCAACCAACCTGGAAAAA 59.538 50.000 0.00 0.00 40.96 1.94
184 185 1.069978 CGGCAACCAACCTGGAAAAAT 59.930 47.619 0.00 0.00 40.96 1.82
185 186 2.766313 GGCAACCAACCTGGAAAAATC 58.234 47.619 0.00 0.00 40.96 2.17
186 187 2.103941 GGCAACCAACCTGGAAAAATCA 59.896 45.455 0.00 0.00 40.96 2.57
187 188 3.432890 GGCAACCAACCTGGAAAAATCAA 60.433 43.478 0.00 0.00 40.96 2.57
188 189 4.388485 GCAACCAACCTGGAAAAATCAAT 58.612 39.130 0.00 0.00 40.96 2.57
189 190 5.512232 GGCAACCAACCTGGAAAAATCAATA 60.512 40.000 0.00 0.00 40.96 1.90
190 191 5.408299 GCAACCAACCTGGAAAAATCAATAC 59.592 40.000 0.00 0.00 40.96 1.89
191 192 6.741240 GCAACCAACCTGGAAAAATCAATACT 60.741 38.462 0.00 0.00 40.96 2.12
192 193 6.994421 ACCAACCTGGAAAAATCAATACTT 57.006 33.333 0.00 0.00 40.96 2.24
193 194 6.993079 ACCAACCTGGAAAAATCAATACTTC 58.007 36.000 0.00 0.00 40.96 3.01
194 195 6.014584 ACCAACCTGGAAAAATCAATACTTCC 60.015 38.462 0.00 0.00 40.96 3.46
195 196 6.211384 CCAACCTGGAAAAATCAATACTTCCT 59.789 38.462 0.00 0.00 40.96 3.36
196 197 7.315890 CAACCTGGAAAAATCAATACTTCCTC 58.684 38.462 0.00 0.00 38.53 3.71
197 198 5.952347 ACCTGGAAAAATCAATACTTCCTCC 59.048 40.000 0.00 0.00 38.53 4.30
198 199 5.360999 CCTGGAAAAATCAATACTTCCTCCC 59.639 44.000 0.00 0.00 38.53 4.30
199 200 5.898120 TGGAAAAATCAATACTTCCTCCCA 58.102 37.500 0.00 0.00 38.53 4.37
200 201 5.714806 TGGAAAAATCAATACTTCCTCCCAC 59.285 40.000 0.00 0.00 38.53 4.61
201 202 5.163652 GGAAAAATCAATACTTCCTCCCACG 60.164 44.000 0.00 0.00 35.46 4.94
202 203 4.837093 AAATCAATACTTCCTCCCACGA 57.163 40.909 0.00 0.00 0.00 4.35
203 204 3.821421 ATCAATACTTCCTCCCACGAC 57.179 47.619 0.00 0.00 0.00 4.34
204 205 2.531771 TCAATACTTCCTCCCACGACA 58.468 47.619 0.00 0.00 0.00 4.35
205 206 3.104512 TCAATACTTCCTCCCACGACAT 58.895 45.455 0.00 0.00 0.00 3.06
206 207 4.283337 TCAATACTTCCTCCCACGACATA 58.717 43.478 0.00 0.00 0.00 2.29
207 208 4.712829 TCAATACTTCCTCCCACGACATAA 59.287 41.667 0.00 0.00 0.00 1.90
208 209 5.365605 TCAATACTTCCTCCCACGACATAAT 59.634 40.000 0.00 0.00 0.00 1.28
209 210 5.888982 ATACTTCCTCCCACGACATAATT 57.111 39.130 0.00 0.00 0.00 1.40
210 211 3.873910 ACTTCCTCCCACGACATAATTG 58.126 45.455 0.00 0.00 0.00 2.32
211 212 3.263425 ACTTCCTCCCACGACATAATTGT 59.737 43.478 0.00 0.00 39.32 2.71
212 213 4.468510 ACTTCCTCCCACGACATAATTGTA 59.531 41.667 0.00 0.00 35.79 2.41
213 214 4.665833 TCCTCCCACGACATAATTGTAG 57.334 45.455 0.00 0.00 35.79 2.74
214 215 3.386726 TCCTCCCACGACATAATTGTAGG 59.613 47.826 0.00 0.00 35.79 3.18
215 216 3.494398 CCTCCCACGACATAATTGTAGGG 60.494 52.174 0.00 0.00 40.95 3.53
217 218 2.218603 CCACGACATAATTGTAGGGGC 58.781 52.381 0.00 0.00 43.80 5.80
218 219 2.158813 CCACGACATAATTGTAGGGGCT 60.159 50.000 0.00 0.00 43.80 5.19
219 220 3.541632 CACGACATAATTGTAGGGGCTT 58.458 45.455 0.00 0.00 35.79 4.35
220 221 3.560068 CACGACATAATTGTAGGGGCTTC 59.440 47.826 0.00 0.00 35.79 3.86
221 222 3.454812 ACGACATAATTGTAGGGGCTTCT 59.545 43.478 0.00 0.00 35.79 2.85
222 223 4.058817 CGACATAATTGTAGGGGCTTCTC 58.941 47.826 0.00 0.00 35.79 2.87
223 224 4.442893 CGACATAATTGTAGGGGCTTCTCA 60.443 45.833 0.00 0.00 35.79 3.27
224 225 5.041191 ACATAATTGTAGGGGCTTCTCAG 57.959 43.478 0.00 0.00 33.16 3.35
225 226 2.426842 AATTGTAGGGGCTTCTCAGC 57.573 50.000 0.00 0.00 46.52 4.26
226 227 1.589414 ATTGTAGGGGCTTCTCAGCT 58.411 50.000 0.00 0.00 46.44 4.24
227 228 1.362224 TTGTAGGGGCTTCTCAGCTT 58.638 50.000 0.00 0.00 46.44 3.74
228 229 0.905357 TGTAGGGGCTTCTCAGCTTC 59.095 55.000 0.00 0.00 46.44 3.86
229 230 1.199615 GTAGGGGCTTCTCAGCTTCT 58.800 55.000 0.00 0.00 46.44 2.85
230 231 1.557371 GTAGGGGCTTCTCAGCTTCTT 59.443 52.381 0.00 0.00 46.44 2.52
231 232 0.617935 AGGGGCTTCTCAGCTTCTTC 59.382 55.000 0.00 0.00 46.44 2.87
232 233 0.393673 GGGGCTTCTCAGCTTCTTCC 60.394 60.000 0.00 0.00 46.44 3.46
233 234 0.326264 GGGCTTCTCAGCTTCTTCCA 59.674 55.000 0.00 0.00 46.44 3.53
234 235 1.064832 GGGCTTCTCAGCTTCTTCCAT 60.065 52.381 0.00 0.00 46.44 3.41
235 236 2.620108 GGGCTTCTCAGCTTCTTCCATT 60.620 50.000 0.00 0.00 46.44 3.16
236 237 2.682352 GGCTTCTCAGCTTCTTCCATTC 59.318 50.000 0.00 0.00 46.44 2.67
237 238 3.341823 GCTTCTCAGCTTCTTCCATTCA 58.658 45.455 0.00 0.00 43.51 2.57
238 239 3.755378 GCTTCTCAGCTTCTTCCATTCAA 59.245 43.478 0.00 0.00 43.51 2.69
239 240 4.379290 GCTTCTCAGCTTCTTCCATTCAAC 60.379 45.833 0.00 0.00 43.51 3.18
240 241 4.630644 TCTCAGCTTCTTCCATTCAACT 57.369 40.909 0.00 0.00 0.00 3.16
241 242 4.978099 TCTCAGCTTCTTCCATTCAACTT 58.022 39.130 0.00 0.00 0.00 2.66
242 243 5.380043 TCTCAGCTTCTTCCATTCAACTTT 58.620 37.500 0.00 0.00 0.00 2.66
243 244 5.471456 TCTCAGCTTCTTCCATTCAACTTTC 59.529 40.000 0.00 0.00 0.00 2.62
244 245 5.380043 TCAGCTTCTTCCATTCAACTTTCT 58.620 37.500 0.00 0.00 0.00 2.52
245 246 5.471456 TCAGCTTCTTCCATTCAACTTTCTC 59.529 40.000 0.00 0.00 0.00 2.87
246 247 4.453819 AGCTTCTTCCATTCAACTTTCTCG 59.546 41.667 0.00 0.00 0.00 4.04
247 248 4.214332 GCTTCTTCCATTCAACTTTCTCGT 59.786 41.667 0.00 0.00 0.00 4.18
248 249 5.673337 TTCTTCCATTCAACTTTCTCGTG 57.327 39.130 0.00 0.00 0.00 4.35
249 250 3.498397 TCTTCCATTCAACTTTCTCGTGC 59.502 43.478 0.00 0.00 0.00 5.34
250 251 3.126001 TCCATTCAACTTTCTCGTGCT 57.874 42.857 0.00 0.00 0.00 4.40
251 252 4.265904 TCCATTCAACTTTCTCGTGCTA 57.734 40.909 0.00 0.00 0.00 3.49
252 253 4.832248 TCCATTCAACTTTCTCGTGCTAT 58.168 39.130 0.00 0.00 0.00 2.97
253 254 5.972935 TCCATTCAACTTTCTCGTGCTATA 58.027 37.500 0.00 0.00 0.00 1.31
254 255 6.582636 TCCATTCAACTTTCTCGTGCTATAT 58.417 36.000 0.00 0.00 0.00 0.86
255 256 6.701841 TCCATTCAACTTTCTCGTGCTATATC 59.298 38.462 0.00 0.00 0.00 1.63
256 257 6.479990 CCATTCAACTTTCTCGTGCTATATCA 59.520 38.462 0.00 0.00 0.00 2.15
257 258 7.011389 CCATTCAACTTTCTCGTGCTATATCAA 59.989 37.037 0.00 0.00 0.00 2.57
258 259 8.554528 CATTCAACTTTCTCGTGCTATATCAAT 58.445 33.333 0.00 0.00 0.00 2.57
259 260 7.468922 TCAACTTTCTCGTGCTATATCAATG 57.531 36.000 0.00 0.00 0.00 2.82
260 261 7.264947 TCAACTTTCTCGTGCTATATCAATGA 58.735 34.615 0.00 0.00 0.00 2.57
261 262 7.928167 TCAACTTTCTCGTGCTATATCAATGAT 59.072 33.333 0.00 0.00 0.00 2.45
262 263 7.649370 ACTTTCTCGTGCTATATCAATGATG 57.351 36.000 5.91 0.00 0.00 3.07
263 264 7.212976 ACTTTCTCGTGCTATATCAATGATGT 58.787 34.615 5.91 1.38 0.00 3.06
264 265 8.360390 ACTTTCTCGTGCTATATCAATGATGTA 58.640 33.333 5.91 2.65 0.00 2.29
265 266 9.363763 CTTTCTCGTGCTATATCAATGATGTAT 57.636 33.333 5.91 0.00 0.00 2.29
266 267 9.710900 TTTCTCGTGCTATATCAATGATGTATT 57.289 29.630 5.91 0.00 0.00 1.89
267 268 9.710900 TTCTCGTGCTATATCAATGATGTATTT 57.289 29.630 5.91 0.00 0.00 1.40
268 269 9.710900 TCTCGTGCTATATCAATGATGTATTTT 57.289 29.630 5.91 0.00 0.00 1.82
271 272 9.882996 CGTGCTATATCAATGATGTATTTTTGT 57.117 29.630 5.91 0.00 0.00 2.83
290 291 9.710900 ATTTTTGTCTTGAAACATATTTCCTCC 57.289 29.630 0.00 0.00 43.18 4.30
291 292 6.494893 TTGTCTTGAAACATATTTCCTCCG 57.505 37.500 0.00 0.00 43.18 4.63
292 293 5.556915 TGTCTTGAAACATATTTCCTCCGT 58.443 37.500 0.00 0.00 43.18 4.69
293 294 6.001460 TGTCTTGAAACATATTTCCTCCGTT 58.999 36.000 0.00 0.00 43.18 4.44
294 295 6.488683 TGTCTTGAAACATATTTCCTCCGTTT 59.511 34.615 0.00 0.00 43.18 3.60
295 296 7.013846 TGTCTTGAAACATATTTCCTCCGTTTT 59.986 33.333 0.00 0.00 43.18 2.43
296 297 8.508875 GTCTTGAAACATATTTCCTCCGTTTTA 58.491 33.333 0.00 0.00 43.18 1.52
297 298 9.069082 TCTTGAAACATATTTCCTCCGTTTTAA 57.931 29.630 0.00 0.00 43.18 1.52
298 299 9.685828 CTTGAAACATATTTCCTCCGTTTTAAA 57.314 29.630 0.00 0.00 43.18 1.52
308 309 8.857694 TTTCCTCCGTTTTAAAATAGATGACT 57.142 30.769 3.52 0.00 0.00 3.41
309 310 8.488651 TTCCTCCGTTTTAAAATAGATGACTC 57.511 34.615 3.52 0.00 0.00 3.36
310 311 7.617225 TCCTCCGTTTTAAAATAGATGACTCA 58.383 34.615 3.52 0.00 0.00 3.41
311 312 8.098286 TCCTCCGTTTTAAAATAGATGACTCAA 58.902 33.333 3.52 0.00 0.00 3.02
312 313 8.893727 CCTCCGTTTTAAAATAGATGACTCAAT 58.106 33.333 3.52 0.00 0.00 2.57
329 330 9.799106 ATGACTCAATTTTATACTAATGGAGGG 57.201 33.333 12.56 0.00 37.37 4.30
330 331 8.998814 TGACTCAATTTTATACTAATGGAGGGA 58.001 33.333 12.56 1.21 37.37 4.20
331 332 9.495572 GACTCAATTTTATACTAATGGAGGGAG 57.504 37.037 12.56 0.00 37.37 4.30
332 333 9.004231 ACTCAATTTTATACTAATGGAGGGAGT 57.996 33.333 12.56 0.00 37.37 3.85
347 348 5.729229 TGGAGGGAGTAATGGAGTATTTTGA 59.271 40.000 0.00 0.00 0.00 2.69
352 353 9.398921 AGGGAGTAATGGAGTATTTTGATAGAT 57.601 33.333 0.00 0.00 0.00 1.98
371 373 8.982685 TGATAGATGATCGAAAATACAAGAAGC 58.017 33.333 0.00 0.00 37.38 3.86
446 449 4.635833 TTGTACTTGGTTCCGTTTTTCC 57.364 40.909 0.00 0.00 0.00 3.13
448 451 5.033589 TGTACTTGGTTCCGTTTTTCCTA 57.966 39.130 0.00 0.00 0.00 2.94
486 492 2.531912 CGACTGCGACACATTGTATCTC 59.468 50.000 0.00 0.00 40.82 2.75
492 498 2.159296 CGACACATTGTATCTCCCACGA 60.159 50.000 0.00 0.00 0.00 4.35
493 499 3.187700 GACACATTGTATCTCCCACGAC 58.812 50.000 0.00 0.00 0.00 4.34
510 516 5.511088 CACGACAAGTTGTGGTAGATAAC 57.489 43.478 21.29 0.00 37.20 1.89
511 517 4.986034 CACGACAAGTTGTGGTAGATAACA 59.014 41.667 21.29 0.00 37.20 2.41
516 522 4.910458 AGTTGTGGTAGATAACAAGGCT 57.090 40.909 0.00 0.00 36.98 4.58
517 523 6.170506 CAAGTTGTGGTAGATAACAAGGCTA 58.829 40.000 0.00 0.00 36.98 3.93
523 529 3.186613 GGTAGATAACAAGGCTATTGCGC 59.813 47.826 0.00 0.00 40.82 6.09
540 546 2.434884 CGGCTCGTGGCAGACAAT 60.435 61.111 11.75 0.00 44.01 2.71
558 564 6.017605 CAGACAATGACCTCAACATAATAGCC 60.018 42.308 0.00 0.00 0.00 3.93
662 672 9.126151 TGGACAACAAATTTGTGAAGATAGTTA 57.874 29.630 23.93 1.96 41.31 2.24
672 682 7.598759 TTGTGAAGATAGTTATACTCCCTCC 57.401 40.000 0.00 0.00 0.00 4.30
673 683 5.768662 TGTGAAGATAGTTATACTCCCTCCG 59.231 44.000 0.00 0.00 0.00 4.63
674 684 5.769162 GTGAAGATAGTTATACTCCCTCCGT 59.231 44.000 0.00 0.00 0.00 4.69
675 685 6.002704 TGAAGATAGTTATACTCCCTCCGTC 58.997 44.000 0.00 0.00 0.00 4.79
676 686 5.846528 AGATAGTTATACTCCCTCCGTCT 57.153 43.478 0.00 0.00 0.00 4.18
677 687 5.807909 AGATAGTTATACTCCCTCCGTCTC 58.192 45.833 0.00 0.00 0.00 3.36
678 688 3.947612 AGTTATACTCCCTCCGTCTCA 57.052 47.619 0.00 0.00 0.00 3.27
679 689 4.456662 AGTTATACTCCCTCCGTCTCAT 57.543 45.455 0.00 0.00 0.00 2.90
680 690 5.579753 AGTTATACTCCCTCCGTCTCATA 57.420 43.478 0.00 0.00 0.00 2.15
681 691 5.950023 AGTTATACTCCCTCCGTCTCATAA 58.050 41.667 0.00 0.00 0.00 1.90
682 692 6.553857 AGTTATACTCCCTCCGTCTCATAAT 58.446 40.000 0.00 0.00 0.00 1.28
683 693 7.696981 AGTTATACTCCCTCCGTCTCATAATA 58.303 38.462 0.00 0.00 0.00 0.98
684 694 8.337739 AGTTATACTCCCTCCGTCTCATAATAT 58.662 37.037 0.00 0.00 0.00 1.28
685 695 9.624373 GTTATACTCCCTCCGTCTCATAATATA 57.376 37.037 0.00 0.00 0.00 0.86
687 697 8.754991 ATACTCCCTCCGTCTCATAATATAAG 57.245 38.462 0.00 0.00 0.00 1.73
688 698 6.791371 ACTCCCTCCGTCTCATAATATAAGA 58.209 40.000 0.00 0.00 0.00 2.10
689 699 7.239438 ACTCCCTCCGTCTCATAATATAAGAA 58.761 38.462 0.00 0.00 0.00 2.52
690 700 7.177041 ACTCCCTCCGTCTCATAATATAAGAAC 59.823 40.741 0.00 0.00 0.00 3.01
691 701 6.150641 TCCCTCCGTCTCATAATATAAGAACG 59.849 42.308 0.00 0.00 0.00 3.95
692 702 6.072064 CCCTCCGTCTCATAATATAAGAACGT 60.072 42.308 0.00 0.00 0.00 3.99
693 703 7.368833 CCTCCGTCTCATAATATAAGAACGTT 58.631 38.462 0.00 0.00 0.00 3.99
694 704 7.866393 CCTCCGTCTCATAATATAAGAACGTTT 59.134 37.037 0.46 0.00 0.00 3.60
695 705 9.245962 CTCCGTCTCATAATATAAGAACGTTTT 57.754 33.333 0.46 0.00 0.00 2.43
696 706 9.590451 TCCGTCTCATAATATAAGAACGTTTTT 57.410 29.630 9.22 9.22 0.00 1.94
724 734 9.918630 ACACTAGTATAATGTTAAACACGTTCT 57.081 29.630 0.00 0.00 36.01 3.01
735 745 9.849166 ATGTTAAACACGTTCTTATATTTTGGG 57.151 29.630 0.00 0.00 0.00 4.12
736 746 9.064706 TGTTAAACACGTTCTTATATTTTGGGA 57.935 29.630 0.00 0.00 0.00 4.37
737 747 9.550811 GTTAAACACGTTCTTATATTTTGGGAG 57.449 33.333 0.00 0.00 0.00 4.30
738 748 7.989416 AAACACGTTCTTATATTTTGGGAGA 57.011 32.000 0.00 0.00 0.00 3.71
739 749 7.611213 AACACGTTCTTATATTTTGGGAGAG 57.389 36.000 0.00 0.00 0.00 3.20
740 750 6.942976 ACACGTTCTTATATTTTGGGAGAGA 58.057 36.000 0.00 0.00 0.00 3.10
741 751 7.042335 ACACGTTCTTATATTTTGGGAGAGAG 58.958 38.462 0.00 0.00 0.00 3.20
742 752 6.480320 CACGTTCTTATATTTTGGGAGAGAGG 59.520 42.308 0.00 0.00 0.00 3.69
743 753 6.383147 ACGTTCTTATATTTTGGGAGAGAGGA 59.617 38.462 0.00 0.00 0.00 3.71
744 754 7.093024 ACGTTCTTATATTTTGGGAGAGAGGAA 60.093 37.037 0.00 0.00 0.00 3.36
803 1546 2.431942 CGTGTAGCCGTGTGGGTC 60.432 66.667 0.00 0.00 44.55 4.46
906 1658 3.901222 GGAAGGAAGGAAACAAATGGGAA 59.099 43.478 0.00 0.00 0.00 3.97
949 1709 4.095185 TGGTCAACTCCTTAAACAACAACG 59.905 41.667 0.00 0.00 0.00 4.10
958 1718 5.183522 TCCTTAAACAACAACGTTCCAAAGT 59.816 36.000 0.00 0.00 0.00 2.66
1085 1845 2.972819 GCTTCCTCCACCTCCACCC 61.973 68.421 0.00 0.00 0.00 4.61
1254 2020 2.432146 TCTGAGCTTTGACGGCTATGAT 59.568 45.455 0.00 0.00 40.40 2.45
1498 2267 3.569049 AACTCGGGCGTTCTGTCGG 62.569 63.158 0.00 0.00 0.00 4.79
1536 2305 3.184683 GCGCGCACTGAAGAGGAG 61.185 66.667 29.10 0.00 0.00 3.69
1677 2446 3.437795 CCGCCCAAGAAGCAGCAG 61.438 66.667 0.00 0.00 0.00 4.24
1678 2447 4.112341 CGCCCAAGAAGCAGCAGC 62.112 66.667 0.00 0.00 42.56 5.25
1944 2731 3.148279 GAGCTCCCCACCGACGAT 61.148 66.667 0.87 0.00 0.00 3.73
2020 2810 2.534903 GGCAGAAATAGCGCCGACC 61.535 63.158 2.29 0.00 35.79 4.79
2262 3058 0.176680 ACCTCACCAGCGTCATCATC 59.823 55.000 0.00 0.00 0.00 2.92
2431 3227 1.586154 CCGGTCAACTGCCATGTTCC 61.586 60.000 0.00 0.00 0.00 3.62
2460 3256 5.421056 TCGAACACCCTCTTCTGTAACATAT 59.579 40.000 0.00 0.00 0.00 1.78
2461 3257 6.604396 TCGAACACCCTCTTCTGTAACATATA 59.396 38.462 0.00 0.00 0.00 0.86
2462 3258 6.696148 CGAACACCCTCTTCTGTAACATATAC 59.304 42.308 0.00 0.00 0.00 1.47
2646 3446 4.487714 AGAGGTTTGTCTGTCTGTCAAA 57.512 40.909 0.00 0.00 32.85 2.69
2653 3453 5.739752 TTGTCTGTCTGTCAAATGTCAAG 57.260 39.130 0.00 0.00 0.00 3.02
2655 3455 5.912892 TGTCTGTCTGTCAAATGTCAAGTA 58.087 37.500 0.00 0.00 0.00 2.24
2656 3456 5.985530 TGTCTGTCTGTCAAATGTCAAGTAG 59.014 40.000 0.00 0.00 0.00 2.57
2657 3457 5.986135 GTCTGTCTGTCAAATGTCAAGTAGT 59.014 40.000 0.00 0.00 0.00 2.73
2659 3459 7.815068 GTCTGTCTGTCAAATGTCAAGTAGTAT 59.185 37.037 0.00 0.00 0.00 2.12
2660 3460 8.029522 TCTGTCTGTCAAATGTCAAGTAGTATC 58.970 37.037 0.00 0.00 0.00 2.24
2661 3461 7.666623 TGTCTGTCAAATGTCAAGTAGTATCA 58.333 34.615 0.00 0.00 0.00 2.15
2662 3462 8.147704 TGTCTGTCAAATGTCAAGTAGTATCAA 58.852 33.333 0.00 0.00 0.00 2.57
2663 3463 8.988934 GTCTGTCAAATGTCAAGTAGTATCAAA 58.011 33.333 0.00 0.00 0.00 2.69
2664 3464 9.554395 TCTGTCAAATGTCAAGTAGTATCAAAA 57.446 29.630 0.00 0.00 0.00 2.44
2706 3506 6.676990 ACTATCATAGTGAATGGCAGATCA 57.323 37.500 0.00 1.96 37.69 2.92
2718 3518 8.790718 GTGAATGGCAGATCATGTCTTATATTT 58.209 33.333 8.74 0.00 34.00 1.40
2833 3633 8.517878 AGAATCATCAGTTTGAACTACCAATTG 58.482 33.333 0.00 0.00 37.08 2.32
2885 3685 0.179215 GAAGTTCGATGTTGCAGCCG 60.179 55.000 0.00 0.00 0.00 5.52
2936 3737 0.538118 GGGTGGACTATGTTGGCGTA 59.462 55.000 0.00 0.00 0.00 4.42
2960 3761 2.477863 GCCTTACATTACTTGCAAGCCG 60.478 50.000 26.27 13.95 28.69 5.52
3185 3986 8.545472 ACATTCCACTTACCTAGCTGTATTTTA 58.455 33.333 0.00 0.00 0.00 1.52
3186 3987 9.561069 CATTCCACTTACCTAGCTGTATTTTAT 57.439 33.333 0.00 0.00 0.00 1.40
3309 4119 0.038166 TGGGGTTCCATGAGTTGCTC 59.962 55.000 0.00 0.00 38.32 4.26
3316 4126 2.176045 TCCATGAGTTGCTCGAGGTAA 58.824 47.619 15.58 0.00 32.35 2.85
3375 4185 6.043938 TCTCCATCATCATCATCTCATTGGAA 59.956 38.462 0.00 0.00 30.86 3.53
3402 4212 2.381752 TATGGAGATCTTCGGCCTGA 57.618 50.000 0.00 0.00 0.00 3.86
3403 4213 1.500474 ATGGAGATCTTCGGCCTGAA 58.500 50.000 0.00 5.47 34.74 3.02
3429 4239 9.603298 AAATTGATCATGATCGATTACAAATCG 57.397 29.630 35.68 14.26 46.15 3.34
3430 4240 6.156932 TGATCATGATCGATTACAAATCGC 57.843 37.500 26.52 3.21 40.63 4.58
3470 8288 3.004734 GCATACATGGTTGCCTTATGGTC 59.995 47.826 10.18 0.00 35.27 4.02
3598 8418 9.197694 CTTGATCTTGAGTTTATTCGGGTATAG 57.802 37.037 0.00 0.00 0.00 1.31
3642 8462 3.572255 GGTAAACCAATGGAGCAAGACAA 59.428 43.478 6.16 0.00 35.64 3.18
3646 8466 5.391312 AACCAATGGAGCAAGACAATAAC 57.609 39.130 6.16 0.00 0.00 1.89
3656 8476 7.491048 TGGAGCAAGACAATAACTTTGTTTTTC 59.509 33.333 0.00 0.00 31.96 2.29
3658 8478 6.475402 AGCAAGACAATAACTTTGTTTTTCGG 59.525 34.615 0.00 0.00 31.96 4.30
3688 8508 4.217118 AGTTCGCTGCTCAATTGAAGAAAT 59.783 37.500 9.88 6.93 0.00 2.17
3693 8513 4.322804 GCTGCTCAATTGAAGAAATTCACG 59.677 41.667 9.88 0.00 36.28 4.35
3707 8527 0.813610 TTCACGGTGTCTGTGCTTGG 60.814 55.000 8.17 0.00 37.26 3.61
4004 8824 8.264347 ACAATCTATTTTGTTTGTTTTGGGAGT 58.736 29.630 0.00 0.00 36.43 3.85
4027 8848 6.754675 AGTACCAATTTTTGTACAAGCACAAC 59.245 34.615 8.56 2.12 38.12 3.32
4042 8863 3.252701 AGCACAACTTTGCATCAAGAGAG 59.747 43.478 5.15 0.00 45.62 3.20
4102 8923 9.632638 TCATGGCTTAAATTCTAGAGCTTAATT 57.367 29.630 8.14 0.00 35.53 1.40
4104 8925 9.859152 ATGGCTTAAATTCTAGAGCTTAATTCT 57.141 29.630 8.14 0.00 35.53 2.40
4177 8998 6.831868 AGAAACAACTTTTTCTAGGCCAAGTA 59.168 34.615 5.01 0.00 42.79 2.24
4178 8999 7.340999 AGAAACAACTTTTTCTAGGCCAAGTAA 59.659 33.333 5.01 0.00 42.79 2.24
4199 9020 3.081061 AGTTGCACAAAGTCAAGTCACA 58.919 40.909 0.00 0.00 0.00 3.58
4299 9121 2.735151 AGCATTTAGTTACCCAAGCCC 58.265 47.619 0.00 0.00 0.00 5.19
4307 9129 2.838813 AGTTACCCAAGCCCTCTTAGAC 59.161 50.000 0.00 0.00 0.00 2.59
4319 9141 4.680708 GCCCTCTTAGACGAATGATCAACA 60.681 45.833 0.00 0.00 0.00 3.33
4370 9201 9.090103 CATACCAGACTAAAGAATATAGGGTCA 57.910 37.037 0.00 0.00 0.00 4.02
4467 9298 4.130118 AGACCACAATAAGATGATTCCGC 58.870 43.478 0.00 0.00 0.00 5.54
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 4.233123 ACAGTGCAAGATCAACACATTG 57.767 40.909 13.22 7.10 36.76 2.82
3 4 4.924305 AACAGTGCAAGATCAACACATT 57.076 36.364 13.22 6.19 36.76 2.71
4 5 7.686438 TTATAACAGTGCAAGATCAACACAT 57.314 32.000 13.22 3.36 36.76 3.21
5 6 7.686438 ATTATAACAGTGCAAGATCAACACA 57.314 32.000 13.22 0.00 36.76 3.72
6 7 8.023128 ACAATTATAACAGTGCAAGATCAACAC 58.977 33.333 0.00 0.00 34.48 3.32
7 8 8.109705 ACAATTATAACAGTGCAAGATCAACA 57.890 30.769 0.00 0.00 0.00 3.33
8 9 7.698130 GGACAATTATAACAGTGCAAGATCAAC 59.302 37.037 0.00 0.00 0.00 3.18
9 10 7.392953 TGGACAATTATAACAGTGCAAGATCAA 59.607 33.333 9.81 0.00 29.28 2.57
10 11 6.883756 TGGACAATTATAACAGTGCAAGATCA 59.116 34.615 9.81 0.00 29.28 2.92
11 12 7.148255 TGTGGACAATTATAACAGTGCAAGATC 60.148 37.037 12.73 4.42 34.16 2.75
12 13 6.658816 TGTGGACAATTATAACAGTGCAAGAT 59.341 34.615 12.73 0.00 34.16 2.40
13 14 6.000840 TGTGGACAATTATAACAGTGCAAGA 58.999 36.000 12.73 3.50 34.16 3.02
14 15 6.086222 GTGTGGACAATTATAACAGTGCAAG 58.914 40.000 12.73 0.00 34.16 4.01
15 16 5.334491 CGTGTGGACAATTATAACAGTGCAA 60.334 40.000 12.73 4.29 34.16 4.08
16 17 4.153296 CGTGTGGACAATTATAACAGTGCA 59.847 41.667 8.60 8.60 0.00 4.57
17 18 4.153475 ACGTGTGGACAATTATAACAGTGC 59.847 41.667 0.00 4.35 0.00 4.40
18 19 5.856126 ACGTGTGGACAATTATAACAGTG 57.144 39.130 0.00 0.00 0.00 3.66
19 20 9.826574 ATATAACGTGTGGACAATTATAACAGT 57.173 29.630 0.00 0.00 31.26 3.55
22 23 9.872757 CCAATATAACGTGTGGACAATTATAAC 57.127 33.333 0.00 0.00 31.26 1.89
23 24 8.561212 GCCAATATAACGTGTGGACAATTATAA 58.439 33.333 0.00 0.00 31.26 0.98
24 25 7.934665 AGCCAATATAACGTGTGGACAATTATA 59.065 33.333 0.00 7.00 32.54 0.98
25 26 6.770785 AGCCAATATAACGTGTGGACAATTAT 59.229 34.615 0.00 0.00 32.54 1.28
26 27 6.116806 AGCCAATATAACGTGTGGACAATTA 58.883 36.000 0.00 0.00 32.54 1.40
27 28 4.947388 AGCCAATATAACGTGTGGACAATT 59.053 37.500 0.00 0.00 32.54 2.32
28 29 4.523083 AGCCAATATAACGTGTGGACAAT 58.477 39.130 0.00 0.00 32.54 2.71
29 30 3.936453 GAGCCAATATAACGTGTGGACAA 59.064 43.478 0.00 0.00 32.54 3.18
30 31 3.196901 AGAGCCAATATAACGTGTGGACA 59.803 43.478 0.00 0.00 32.54 4.02
31 32 3.793559 AGAGCCAATATAACGTGTGGAC 58.206 45.455 0.00 0.00 32.54 4.02
32 33 4.647853 AGTAGAGCCAATATAACGTGTGGA 59.352 41.667 0.00 0.00 32.54 4.02
33 34 4.945246 AGTAGAGCCAATATAACGTGTGG 58.055 43.478 0.00 0.00 0.00 4.17
34 35 5.588240 TGAGTAGAGCCAATATAACGTGTG 58.412 41.667 0.00 0.00 0.00 3.82
35 36 5.847111 TGAGTAGAGCCAATATAACGTGT 57.153 39.130 0.00 0.00 0.00 4.49
36 37 7.148641 AGAATGAGTAGAGCCAATATAACGTG 58.851 38.462 0.00 0.00 0.00 4.49
37 38 7.014326 TGAGAATGAGTAGAGCCAATATAACGT 59.986 37.037 0.00 0.00 0.00 3.99
38 39 7.327275 GTGAGAATGAGTAGAGCCAATATAACG 59.673 40.741 0.00 0.00 0.00 3.18
39 40 7.600752 GGTGAGAATGAGTAGAGCCAATATAAC 59.399 40.741 0.00 0.00 0.00 1.89
40 41 7.510685 AGGTGAGAATGAGTAGAGCCAATATAA 59.489 37.037 0.00 0.00 0.00 0.98
41 42 7.013220 AGGTGAGAATGAGTAGAGCCAATATA 58.987 38.462 0.00 0.00 0.00 0.86
42 43 5.843421 AGGTGAGAATGAGTAGAGCCAATAT 59.157 40.000 0.00 0.00 0.00 1.28
43 44 5.211973 AGGTGAGAATGAGTAGAGCCAATA 58.788 41.667 0.00 0.00 0.00 1.90
44 45 4.036518 AGGTGAGAATGAGTAGAGCCAAT 58.963 43.478 0.00 0.00 0.00 3.16
45 46 3.445008 AGGTGAGAATGAGTAGAGCCAA 58.555 45.455 0.00 0.00 0.00 4.52
46 47 3.027412 GAGGTGAGAATGAGTAGAGCCA 58.973 50.000 0.00 0.00 0.00 4.75
47 48 3.027412 TGAGGTGAGAATGAGTAGAGCC 58.973 50.000 0.00 0.00 0.00 4.70
48 49 4.935352 ATGAGGTGAGAATGAGTAGAGC 57.065 45.455 0.00 0.00 0.00 4.09
49 50 6.713762 AGAATGAGGTGAGAATGAGTAGAG 57.286 41.667 0.00 0.00 0.00 2.43
50 51 7.450014 GGATAGAATGAGGTGAGAATGAGTAGA 59.550 40.741 0.00 0.00 0.00 2.59
51 52 7.309744 GGGATAGAATGAGGTGAGAATGAGTAG 60.310 44.444 0.00 0.00 0.00 2.57
52 53 6.495181 GGGATAGAATGAGGTGAGAATGAGTA 59.505 42.308 0.00 0.00 0.00 2.59
53 54 5.306678 GGGATAGAATGAGGTGAGAATGAGT 59.693 44.000 0.00 0.00 0.00 3.41
54 55 5.306419 TGGGATAGAATGAGGTGAGAATGAG 59.694 44.000 0.00 0.00 0.00 2.90
55 56 5.218959 TGGGATAGAATGAGGTGAGAATGA 58.781 41.667 0.00 0.00 0.00 2.57
56 57 5.557576 TGGGATAGAATGAGGTGAGAATG 57.442 43.478 0.00 0.00 0.00 2.67
57 58 5.514484 GCATGGGATAGAATGAGGTGAGAAT 60.514 44.000 0.00 0.00 0.00 2.40
58 59 4.202398 GCATGGGATAGAATGAGGTGAGAA 60.202 45.833 0.00 0.00 0.00 2.87
59 60 3.326006 GCATGGGATAGAATGAGGTGAGA 59.674 47.826 0.00 0.00 0.00 3.27
60 61 3.072038 TGCATGGGATAGAATGAGGTGAG 59.928 47.826 0.00 0.00 0.00 3.51
61 62 3.047857 TGCATGGGATAGAATGAGGTGA 58.952 45.455 0.00 0.00 0.00 4.02
62 63 3.497103 TGCATGGGATAGAATGAGGTG 57.503 47.619 0.00 0.00 0.00 4.00
63 64 3.813240 GCATGCATGGGATAGAATGAGGT 60.813 47.826 27.34 0.00 0.00 3.85
64 65 2.753452 GCATGCATGGGATAGAATGAGG 59.247 50.000 27.34 0.00 0.00 3.86
65 66 2.418976 CGCATGCATGGGATAGAATGAG 59.581 50.000 33.58 1.87 42.66 2.90
66 67 2.429478 CGCATGCATGGGATAGAATGA 58.571 47.619 33.58 0.00 42.66 2.57
67 68 1.471287 CCGCATGCATGGGATAGAATG 59.529 52.381 37.16 19.25 42.66 2.67
68 69 1.830279 CCGCATGCATGGGATAGAAT 58.170 50.000 37.16 0.00 42.66 2.40
69 70 3.327600 CCGCATGCATGGGATAGAA 57.672 52.632 37.16 0.00 42.66 2.10
76 77 1.446445 CAAACACCCGCATGCATGG 60.446 57.895 27.34 19.26 0.00 3.66
77 78 0.173935 ATCAAACACCCGCATGCATG 59.826 50.000 22.70 22.70 0.00 4.06
78 79 0.896923 AATCAAACACCCGCATGCAT 59.103 45.000 19.57 0.00 0.00 3.96
79 80 0.038435 CAATCAAACACCCGCATGCA 60.038 50.000 19.57 0.00 0.00 3.96
80 81 1.353609 GCAATCAAACACCCGCATGC 61.354 55.000 7.91 7.91 0.00 4.06
81 82 0.737019 GGCAATCAAACACCCGCATG 60.737 55.000 0.00 0.00 0.00 4.06
82 83 1.184322 TGGCAATCAAACACCCGCAT 61.184 50.000 0.00 0.00 0.00 4.73
83 84 1.395045 TTGGCAATCAAACACCCGCA 61.395 50.000 0.00 0.00 31.46 5.69
84 85 0.037419 ATTGGCAATCAAACACCCGC 60.037 50.000 6.96 0.00 39.05 6.13
85 86 2.453983 AATTGGCAATCAAACACCCG 57.546 45.000 14.04 0.00 39.05 5.28
86 87 2.226200 GCAAATTGGCAATCAAACACCC 59.774 45.455 14.04 0.00 39.05 4.61
87 88 2.226200 GGCAAATTGGCAATCAAACACC 59.774 45.455 14.04 6.10 43.14 4.16
88 89 3.541071 GGCAAATTGGCAATCAAACAC 57.459 42.857 14.04 0.57 43.14 3.32
98 99 1.027255 TGCATGCATGGCAAATTGGC 61.027 50.000 27.34 12.92 43.62 4.52
99 100 0.730265 GTGCATGCATGGCAAATTGG 59.270 50.000 25.64 0.00 43.62 3.16
100 101 0.371989 CGTGCATGCATGGCAAATTG 59.628 50.000 28.79 12.21 43.62 2.32
101 102 1.363145 GCGTGCATGCATGGCAAATT 61.363 50.000 34.64 0.00 43.62 1.82
102 103 1.812093 GCGTGCATGCATGGCAAAT 60.812 52.632 34.64 0.00 43.62 2.32
103 104 2.432800 GCGTGCATGCATGGCAAA 60.433 55.556 34.64 4.72 43.62 3.68
104 105 4.780186 CGCGTGCATGCATGGCAA 62.780 61.111 34.64 5.50 43.62 4.52
106 107 4.899687 CTCGCGTGCATGCATGGC 62.900 66.667 34.64 30.73 33.81 4.40
107 108 2.642249 CTTCTCGCGTGCATGCATGG 62.642 60.000 34.64 25.52 33.81 3.66
108 109 1.297378 CTTCTCGCGTGCATGCATG 60.297 57.895 31.36 31.36 36.13 4.06
109 110 2.466982 CCTTCTCGCGTGCATGCAT 61.467 57.895 29.23 0.00 34.15 3.96
110 111 3.120385 CCTTCTCGCGTGCATGCA 61.120 61.111 29.23 18.46 34.15 3.96
111 112 4.527157 GCCTTCTCGCGTGCATGC 62.527 66.667 21.27 21.27 0.00 4.06
119 120 1.855360 CTCAATTACTCGCCTTCTCGC 59.145 52.381 0.00 0.00 0.00 5.03
120 121 3.181495 ACTCTCAATTACTCGCCTTCTCG 60.181 47.826 0.00 0.00 0.00 4.04
121 122 4.109050 CACTCTCAATTACTCGCCTTCTC 58.891 47.826 0.00 0.00 0.00 2.87
122 123 3.118956 CCACTCTCAATTACTCGCCTTCT 60.119 47.826 0.00 0.00 0.00 2.85
123 124 3.190874 CCACTCTCAATTACTCGCCTTC 58.809 50.000 0.00 0.00 0.00 3.46
124 125 2.093447 CCCACTCTCAATTACTCGCCTT 60.093 50.000 0.00 0.00 0.00 4.35
125 126 1.482593 CCCACTCTCAATTACTCGCCT 59.517 52.381 0.00 0.00 0.00 5.52
126 127 1.207329 ACCCACTCTCAATTACTCGCC 59.793 52.381 0.00 0.00 0.00 5.54
127 128 2.674796 ACCCACTCTCAATTACTCGC 57.325 50.000 0.00 0.00 0.00 5.03
128 129 4.985538 ACTACCCACTCTCAATTACTCG 57.014 45.455 0.00 0.00 0.00 4.18
129 130 5.360144 TGCTACTACCCACTCTCAATTACTC 59.640 44.000 0.00 0.00 0.00 2.59
130 131 5.269991 TGCTACTACCCACTCTCAATTACT 58.730 41.667 0.00 0.00 0.00 2.24
131 132 5.360144 TCTGCTACTACCCACTCTCAATTAC 59.640 44.000 0.00 0.00 0.00 1.89
132 133 5.516044 TCTGCTACTACCCACTCTCAATTA 58.484 41.667 0.00 0.00 0.00 1.40
133 134 4.353777 TCTGCTACTACCCACTCTCAATT 58.646 43.478 0.00 0.00 0.00 2.32
134 135 3.982516 TCTGCTACTACCCACTCTCAAT 58.017 45.455 0.00 0.00 0.00 2.57
135 136 3.451402 TCTGCTACTACCCACTCTCAA 57.549 47.619 0.00 0.00 0.00 3.02
136 137 3.671740 ATCTGCTACTACCCACTCTCA 57.328 47.619 0.00 0.00 0.00 3.27
137 138 4.402793 TCAAATCTGCTACTACCCACTCTC 59.597 45.833 0.00 0.00 0.00 3.20
138 139 4.353777 TCAAATCTGCTACTACCCACTCT 58.646 43.478 0.00 0.00 0.00 3.24
139 140 4.737855 TCAAATCTGCTACTACCCACTC 57.262 45.455 0.00 0.00 0.00 3.51
140 141 5.499004 TTTCAAATCTGCTACTACCCACT 57.501 39.130 0.00 0.00 0.00 4.00
141 142 5.390567 CGTTTTCAAATCTGCTACTACCCAC 60.391 44.000 0.00 0.00 0.00 4.61
142 143 4.693566 CGTTTTCAAATCTGCTACTACCCA 59.306 41.667 0.00 0.00 0.00 4.51
143 144 4.094442 CCGTTTTCAAATCTGCTACTACCC 59.906 45.833 0.00 0.00 0.00 3.69
144 145 4.436986 GCCGTTTTCAAATCTGCTACTACC 60.437 45.833 0.00 0.00 0.00 3.18
145 146 4.153475 TGCCGTTTTCAAATCTGCTACTAC 59.847 41.667 0.00 0.00 0.00 2.73
146 147 4.320023 TGCCGTTTTCAAATCTGCTACTA 58.680 39.130 0.00 0.00 0.00 1.82
147 148 3.146066 TGCCGTTTTCAAATCTGCTACT 58.854 40.909 0.00 0.00 0.00 2.57
148 149 3.552604 TGCCGTTTTCAAATCTGCTAC 57.447 42.857 0.00 0.00 0.00 3.58
149 150 3.305064 GGTTGCCGTTTTCAAATCTGCTA 60.305 43.478 0.00 0.00 0.00 3.49
150 151 2.545742 GGTTGCCGTTTTCAAATCTGCT 60.546 45.455 0.00 0.00 0.00 4.24
151 152 1.792367 GGTTGCCGTTTTCAAATCTGC 59.208 47.619 0.00 0.00 0.00 4.26
152 153 3.090952 TGGTTGCCGTTTTCAAATCTG 57.909 42.857 0.00 0.00 0.00 2.90
153 154 3.453424 GTTGGTTGCCGTTTTCAAATCT 58.547 40.909 0.00 0.00 0.00 2.40
154 155 2.542178 GGTTGGTTGCCGTTTTCAAATC 59.458 45.455 0.00 0.00 0.00 2.17
155 156 2.169561 AGGTTGGTTGCCGTTTTCAAAT 59.830 40.909 0.00 0.00 0.00 2.32
156 157 1.550976 AGGTTGGTTGCCGTTTTCAAA 59.449 42.857 0.00 0.00 0.00 2.69
157 158 1.134965 CAGGTTGGTTGCCGTTTTCAA 60.135 47.619 0.00 0.00 0.00 2.69
158 159 0.457851 CAGGTTGGTTGCCGTTTTCA 59.542 50.000 0.00 0.00 0.00 2.69
159 160 0.249280 CCAGGTTGGTTGCCGTTTTC 60.249 55.000 0.00 0.00 31.35 2.29
160 161 0.684805 TCCAGGTTGGTTGCCGTTTT 60.685 50.000 0.00 0.00 39.03 2.43
161 162 0.684805 TTCCAGGTTGGTTGCCGTTT 60.685 50.000 0.00 0.00 39.03 3.60
162 163 0.684805 TTTCCAGGTTGGTTGCCGTT 60.685 50.000 0.00 0.00 39.03 4.44
163 164 0.684805 TTTTCCAGGTTGGTTGCCGT 60.685 50.000 0.00 0.00 39.03 5.68
164 165 0.461961 TTTTTCCAGGTTGGTTGCCG 59.538 50.000 0.00 0.00 39.03 5.69
165 166 2.103941 TGATTTTTCCAGGTTGGTTGCC 59.896 45.455 0.00 0.00 39.03 4.52
166 167 3.467374 TGATTTTTCCAGGTTGGTTGC 57.533 42.857 0.00 0.00 39.03 4.17
167 168 6.758254 AGTATTGATTTTTCCAGGTTGGTTG 58.242 36.000 0.00 0.00 39.03 3.77
168 169 6.994421 AGTATTGATTTTTCCAGGTTGGTT 57.006 33.333 0.00 0.00 39.03 3.67
169 170 6.014584 GGAAGTATTGATTTTTCCAGGTTGGT 60.015 38.462 0.00 0.00 39.03 3.67
170 171 6.211384 AGGAAGTATTGATTTTTCCAGGTTGG 59.789 38.462 5.07 0.00 41.19 3.77
171 172 7.232118 AGGAAGTATTGATTTTTCCAGGTTG 57.768 36.000 5.07 0.00 41.19 3.77
172 173 6.437477 GGAGGAAGTATTGATTTTTCCAGGTT 59.563 38.462 5.07 0.00 41.19 3.50
173 174 5.952347 GGAGGAAGTATTGATTTTTCCAGGT 59.048 40.000 5.07 0.00 41.19 4.00
174 175 5.360999 GGGAGGAAGTATTGATTTTTCCAGG 59.639 44.000 5.07 0.00 41.19 4.45
175 176 5.951747 TGGGAGGAAGTATTGATTTTTCCAG 59.048 40.000 5.07 0.00 41.19 3.86
176 177 5.714806 GTGGGAGGAAGTATTGATTTTTCCA 59.285 40.000 5.07 0.00 41.19 3.53
177 178 5.163652 CGTGGGAGGAAGTATTGATTTTTCC 60.164 44.000 0.00 0.00 39.47 3.13
178 179 5.646360 TCGTGGGAGGAAGTATTGATTTTTC 59.354 40.000 0.00 0.00 0.00 2.29
179 180 5.414765 GTCGTGGGAGGAAGTATTGATTTTT 59.585 40.000 0.00 0.00 0.00 1.94
180 181 4.941873 GTCGTGGGAGGAAGTATTGATTTT 59.058 41.667 0.00 0.00 0.00 1.82
181 182 4.019681 TGTCGTGGGAGGAAGTATTGATTT 60.020 41.667 0.00 0.00 0.00 2.17
182 183 3.517901 TGTCGTGGGAGGAAGTATTGATT 59.482 43.478 0.00 0.00 0.00 2.57
183 184 3.104512 TGTCGTGGGAGGAAGTATTGAT 58.895 45.455 0.00 0.00 0.00 2.57
184 185 2.531771 TGTCGTGGGAGGAAGTATTGA 58.468 47.619 0.00 0.00 0.00 2.57
185 186 3.543680 ATGTCGTGGGAGGAAGTATTG 57.456 47.619 0.00 0.00 0.00 1.90
186 187 5.888982 ATTATGTCGTGGGAGGAAGTATT 57.111 39.130 0.00 0.00 0.00 1.89
187 188 5.130477 ACAATTATGTCGTGGGAGGAAGTAT 59.870 40.000 0.00 0.00 33.41 2.12
188 189 4.468510 ACAATTATGTCGTGGGAGGAAGTA 59.531 41.667 0.00 0.00 33.41 2.24
189 190 3.263425 ACAATTATGTCGTGGGAGGAAGT 59.737 43.478 0.00 0.00 33.41 3.01
190 191 3.873910 ACAATTATGTCGTGGGAGGAAG 58.126 45.455 0.00 0.00 33.41 3.46
191 192 3.992943 ACAATTATGTCGTGGGAGGAA 57.007 42.857 0.00 0.00 33.41 3.36
192 193 3.386726 CCTACAATTATGTCGTGGGAGGA 59.613 47.826 0.00 0.00 41.05 3.71
193 194 3.494398 CCCTACAATTATGTCGTGGGAGG 60.494 52.174 8.15 0.00 42.51 4.30
194 195 3.494398 CCCCTACAATTATGTCGTGGGAG 60.494 52.174 12.95 3.97 42.51 4.30
195 196 2.436542 CCCCTACAATTATGTCGTGGGA 59.563 50.000 12.95 0.00 42.51 4.37
196 197 2.846193 CCCCTACAATTATGTCGTGGG 58.154 52.381 0.00 0.00 41.05 4.61
197 198 2.158813 AGCCCCTACAATTATGTCGTGG 60.159 50.000 0.00 0.00 41.05 4.94
198 199 3.194005 AGCCCCTACAATTATGTCGTG 57.806 47.619 0.00 0.00 41.05 4.35
199 200 3.454812 AGAAGCCCCTACAATTATGTCGT 59.545 43.478 0.00 0.00 41.05 4.34
200 201 4.058817 GAGAAGCCCCTACAATTATGTCG 58.941 47.826 0.00 0.00 41.05 4.35
201 202 5.036117 TGAGAAGCCCCTACAATTATGTC 57.964 43.478 0.00 0.00 41.05 3.06
202 203 4.687219 GCTGAGAAGCCCCTACAATTATGT 60.687 45.833 0.00 0.00 43.74 2.29
203 204 3.817647 GCTGAGAAGCCCCTACAATTATG 59.182 47.826 0.00 0.00 0.00 1.90
204 205 3.718956 AGCTGAGAAGCCCCTACAATTAT 59.281 43.478 0.00 0.00 34.90 1.28
205 206 3.115390 AGCTGAGAAGCCCCTACAATTA 58.885 45.455 0.00 0.00 34.90 1.40
206 207 1.918957 AGCTGAGAAGCCCCTACAATT 59.081 47.619 0.00 0.00 34.90 2.32
207 208 1.589414 AGCTGAGAAGCCCCTACAAT 58.411 50.000 0.00 0.00 34.90 2.71
208 209 1.279271 GAAGCTGAGAAGCCCCTACAA 59.721 52.381 0.00 0.00 34.90 2.41
209 210 0.905357 GAAGCTGAGAAGCCCCTACA 59.095 55.000 0.00 0.00 34.90 2.74
210 211 1.199615 AGAAGCTGAGAAGCCCCTAC 58.800 55.000 0.00 0.00 34.90 3.18
211 212 1.834263 GAAGAAGCTGAGAAGCCCCTA 59.166 52.381 0.00 0.00 34.90 3.53
212 213 0.617935 GAAGAAGCTGAGAAGCCCCT 59.382 55.000 0.00 0.00 34.90 4.79
213 214 0.393673 GGAAGAAGCTGAGAAGCCCC 60.394 60.000 0.00 0.00 34.90 5.80
214 215 0.326264 TGGAAGAAGCTGAGAAGCCC 59.674 55.000 0.00 0.00 34.90 5.19
215 216 2.416680 ATGGAAGAAGCTGAGAAGCC 57.583 50.000 0.00 0.00 34.90 4.35
216 217 3.341823 TGAATGGAAGAAGCTGAGAAGC 58.658 45.455 0.00 0.00 0.00 3.86
217 218 5.002516 AGTTGAATGGAAGAAGCTGAGAAG 58.997 41.667 0.00 0.00 0.00 2.85
218 219 4.978099 AGTTGAATGGAAGAAGCTGAGAA 58.022 39.130 0.00 0.00 0.00 2.87
219 220 4.630644 AGTTGAATGGAAGAAGCTGAGA 57.369 40.909 0.00 0.00 0.00 3.27
220 221 5.472820 AGAAAGTTGAATGGAAGAAGCTGAG 59.527 40.000 0.00 0.00 0.00 3.35
221 222 5.380043 AGAAAGTTGAATGGAAGAAGCTGA 58.620 37.500 0.00 0.00 0.00 4.26
222 223 5.616424 CGAGAAAGTTGAATGGAAGAAGCTG 60.616 44.000 0.00 0.00 0.00 4.24
223 224 4.453819 CGAGAAAGTTGAATGGAAGAAGCT 59.546 41.667 0.00 0.00 0.00 3.74
224 225 4.214332 ACGAGAAAGTTGAATGGAAGAAGC 59.786 41.667 0.00 0.00 0.00 3.86
225 226 5.683859 CACGAGAAAGTTGAATGGAAGAAG 58.316 41.667 0.00 0.00 0.00 2.85
226 227 4.024048 GCACGAGAAAGTTGAATGGAAGAA 60.024 41.667 0.00 0.00 0.00 2.52
227 228 3.498397 GCACGAGAAAGTTGAATGGAAGA 59.502 43.478 0.00 0.00 0.00 2.87
228 229 3.499918 AGCACGAGAAAGTTGAATGGAAG 59.500 43.478 0.00 0.00 0.00 3.46
229 230 3.476552 AGCACGAGAAAGTTGAATGGAA 58.523 40.909 0.00 0.00 0.00 3.53
230 231 3.126001 AGCACGAGAAAGTTGAATGGA 57.874 42.857 0.00 0.00 0.00 3.41
231 232 6.479990 TGATATAGCACGAGAAAGTTGAATGG 59.520 38.462 0.00 0.00 0.00 3.16
232 233 7.468922 TGATATAGCACGAGAAAGTTGAATG 57.531 36.000 0.00 0.00 0.00 2.67
233 234 8.554528 CATTGATATAGCACGAGAAAGTTGAAT 58.445 33.333 0.00 0.00 0.00 2.57
234 235 7.763985 TCATTGATATAGCACGAGAAAGTTGAA 59.236 33.333 0.00 0.00 0.00 2.69
235 236 7.264947 TCATTGATATAGCACGAGAAAGTTGA 58.735 34.615 0.00 0.00 0.00 3.18
236 237 7.468922 TCATTGATATAGCACGAGAAAGTTG 57.531 36.000 0.00 0.00 0.00 3.16
237 238 7.712639 ACATCATTGATATAGCACGAGAAAGTT 59.287 33.333 0.00 0.00 0.00 2.66
238 239 7.212976 ACATCATTGATATAGCACGAGAAAGT 58.787 34.615 0.00 0.00 0.00 2.66
239 240 7.649370 ACATCATTGATATAGCACGAGAAAG 57.351 36.000 0.00 0.00 0.00 2.62
240 241 9.710900 AATACATCATTGATATAGCACGAGAAA 57.289 29.630 0.00 0.00 0.00 2.52
241 242 9.710900 AAATACATCATTGATATAGCACGAGAA 57.289 29.630 0.00 0.00 0.00 2.87
242 243 9.710900 AAAATACATCATTGATATAGCACGAGA 57.289 29.630 0.00 0.00 0.00 4.04
245 246 9.882996 ACAAAAATACATCATTGATATAGCACG 57.117 29.630 0.00 0.00 0.00 5.34
264 265 9.710900 GGAGGAAATATGTTTCAAGACAAAAAT 57.289 29.630 15.72 0.00 44.42 1.82
265 266 7.865385 CGGAGGAAATATGTTTCAAGACAAAAA 59.135 33.333 15.72 0.00 44.42 1.94
266 267 7.013846 ACGGAGGAAATATGTTTCAAGACAAAA 59.986 33.333 15.72 0.00 44.42 2.44
267 268 6.488683 ACGGAGGAAATATGTTTCAAGACAAA 59.511 34.615 15.72 0.00 44.42 2.83
268 269 6.001460 ACGGAGGAAATATGTTTCAAGACAA 58.999 36.000 15.72 0.00 44.42 3.18
269 270 5.556915 ACGGAGGAAATATGTTTCAAGACA 58.443 37.500 15.72 0.00 44.42 3.41
270 271 6.496338 AACGGAGGAAATATGTTTCAAGAC 57.504 37.500 15.72 4.85 44.42 3.01
271 272 7.519032 AAAACGGAGGAAATATGTTTCAAGA 57.481 32.000 15.72 0.00 44.42 3.02
272 273 9.685828 TTTAAAACGGAGGAAATATGTTTCAAG 57.314 29.630 15.72 6.87 44.42 3.02
282 283 9.462606 AGTCATCTATTTTAAAACGGAGGAAAT 57.537 29.630 15.79 8.90 0.00 2.17
283 284 8.857694 AGTCATCTATTTTAAAACGGAGGAAA 57.142 30.769 15.79 0.29 0.00 3.13
284 285 8.098286 TGAGTCATCTATTTTAAAACGGAGGAA 58.902 33.333 15.79 4.35 0.00 3.36
285 286 7.617225 TGAGTCATCTATTTTAAAACGGAGGA 58.383 34.615 1.97 8.66 0.00 3.71
286 287 7.843490 TGAGTCATCTATTTTAAAACGGAGG 57.157 36.000 1.97 6.55 0.00 4.30
303 304 9.799106 CCCTCCATTAGTATAAAATTGAGTCAT 57.201 33.333 0.00 0.00 28.75 3.06
304 305 8.998814 TCCCTCCATTAGTATAAAATTGAGTCA 58.001 33.333 0.00 0.00 28.75 3.41
305 306 9.495572 CTCCCTCCATTAGTATAAAATTGAGTC 57.504 37.037 8.31 0.00 28.75 3.36
306 307 9.004231 ACTCCCTCCATTAGTATAAAATTGAGT 57.996 33.333 8.31 0.00 28.75 3.41
312 313 9.455144 TCCATTACTCCCTCCATTAGTATAAAA 57.545 33.333 0.00 0.00 0.00 1.52
313 314 9.101325 CTCCATTACTCCCTCCATTAGTATAAA 57.899 37.037 0.00 0.00 0.00 1.40
314 315 8.239478 ACTCCATTACTCCCTCCATTAGTATAA 58.761 37.037 0.00 0.00 0.00 0.98
315 316 7.776745 ACTCCATTACTCCCTCCATTAGTATA 58.223 38.462 0.00 0.00 0.00 1.47
316 317 6.635021 ACTCCATTACTCCCTCCATTAGTAT 58.365 40.000 0.00 0.00 0.00 2.12
317 318 6.039415 ACTCCATTACTCCCTCCATTAGTA 57.961 41.667 0.00 0.00 0.00 1.82
318 319 4.897051 ACTCCATTACTCCCTCCATTAGT 58.103 43.478 0.00 0.00 0.00 2.24
319 320 7.560796 AATACTCCATTACTCCCTCCATTAG 57.439 40.000 0.00 0.00 0.00 1.73
320 321 7.947782 AAATACTCCATTACTCCCTCCATTA 57.052 36.000 0.00 0.00 0.00 1.90
321 322 6.848562 AAATACTCCATTACTCCCTCCATT 57.151 37.500 0.00 0.00 0.00 3.16
322 323 6.389869 TCAAAATACTCCATTACTCCCTCCAT 59.610 38.462 0.00 0.00 0.00 3.41
323 324 5.729229 TCAAAATACTCCATTACTCCCTCCA 59.271 40.000 0.00 0.00 0.00 3.86
324 325 6.248569 TCAAAATACTCCATTACTCCCTCC 57.751 41.667 0.00 0.00 0.00 4.30
325 326 8.871125 TCTATCAAAATACTCCATTACTCCCTC 58.129 37.037 0.00 0.00 0.00 4.30
326 327 8.798975 TCTATCAAAATACTCCATTACTCCCT 57.201 34.615 0.00 0.00 0.00 4.20
327 328 9.442047 CATCTATCAAAATACTCCATTACTCCC 57.558 37.037 0.00 0.00 0.00 4.30
347 348 9.553064 AAGCTTCTTGTATTTTCGATCATCTAT 57.447 29.630 0.00 0.00 0.00 1.98
352 353 6.801539 ACAAGCTTCTTGTATTTTCGATCA 57.198 33.333 10.16 0.00 0.00 2.92
354 355 5.858581 GCAACAAGCTTCTTGTATTTTCGAT 59.141 36.000 14.79 0.00 41.15 3.59
356 357 4.087085 CGCAACAAGCTTCTTGTATTTTCG 59.913 41.667 14.79 6.05 42.61 3.46
363 364 1.599542 GACTCGCAACAAGCTTCTTGT 59.400 47.619 14.79 6.40 42.61 3.16
364 365 1.069636 GGACTCGCAACAAGCTTCTTG 60.070 52.381 9.85 9.85 42.61 3.02
371 373 2.671177 CCGCTGGACTCGCAACAAG 61.671 63.158 0.00 0.00 0.00 3.16
446 449 6.510799 GCAGTCGAACAAAATCATCTCCATAG 60.511 42.308 0.00 0.00 0.00 2.23
448 451 4.095483 GCAGTCGAACAAAATCATCTCCAT 59.905 41.667 0.00 0.00 0.00 3.41
475 481 3.260884 ACTTGTCGTGGGAGATACAATGT 59.739 43.478 0.00 0.00 31.88 2.71
477 483 4.253685 CAACTTGTCGTGGGAGATACAAT 58.746 43.478 0.00 0.00 31.88 2.71
479 485 2.631062 ACAACTTGTCGTGGGAGATACA 59.369 45.455 0.00 0.00 0.00 2.29
492 498 4.760204 GCCTTGTTATCTACCACAACTTGT 59.240 41.667 0.00 0.00 0.00 3.16
493 499 5.003804 AGCCTTGTTATCTACCACAACTTG 58.996 41.667 0.00 0.00 0.00 3.16
510 516 3.173390 GAGCCGCGCAATAGCCTTG 62.173 63.158 8.75 0.00 37.52 3.61
511 517 2.897350 GAGCCGCGCAATAGCCTT 60.897 61.111 8.75 0.00 37.52 4.35
523 529 2.434884 ATTGTCTGCCACGAGCCG 60.435 61.111 0.00 0.00 42.71 5.52
540 546 2.769663 ACGGGCTATTATGTTGAGGTCA 59.230 45.455 0.00 0.00 0.00 4.02
593 599 7.012135 ATGACTTATCATCGTGGAAGATTCCG 61.012 42.308 7.10 0.00 45.37 4.30
662 672 8.558312 TCTTATATTATGAGACGGAGGGAGTAT 58.442 37.037 0.00 0.00 0.00 2.12
663 673 7.925622 TCTTATATTATGAGACGGAGGGAGTA 58.074 38.462 0.00 0.00 0.00 2.59
664 674 6.791371 TCTTATATTATGAGACGGAGGGAGT 58.209 40.000 0.00 0.00 0.00 3.85
665 675 7.540299 GTTCTTATATTATGAGACGGAGGGAG 58.460 42.308 0.00 0.00 0.00 4.30
666 676 6.150641 CGTTCTTATATTATGAGACGGAGGGA 59.849 42.308 0.00 0.00 0.00 4.20
667 677 6.072064 ACGTTCTTATATTATGAGACGGAGGG 60.072 42.308 16.71 2.79 0.00 4.30
668 678 6.910995 ACGTTCTTATATTATGAGACGGAGG 58.089 40.000 16.71 6.29 0.00 4.30
669 679 8.798748 AAACGTTCTTATATTATGAGACGGAG 57.201 34.615 0.00 6.40 0.00 4.63
670 680 9.590451 AAAAACGTTCTTATATTATGAGACGGA 57.410 29.630 0.00 0.00 0.00 4.69
698 708 9.918630 AGAACGTGTTTAACATTATACTAGTGT 57.081 29.630 5.39 0.39 0.00 3.55
709 719 9.849166 CCCAAAATATAAGAACGTGTTTAACAT 57.151 29.630 0.00 0.00 0.00 2.71
710 720 9.064706 TCCCAAAATATAAGAACGTGTTTAACA 57.935 29.630 0.00 0.00 0.00 2.41
711 721 9.550811 CTCCCAAAATATAAGAACGTGTTTAAC 57.449 33.333 0.00 0.00 0.00 2.01
712 722 9.504708 TCTCCCAAAATATAAGAACGTGTTTAA 57.495 29.630 0.00 0.00 0.00 1.52
713 723 9.158233 CTCTCCCAAAATATAAGAACGTGTTTA 57.842 33.333 0.00 0.00 0.00 2.01
714 724 7.881232 TCTCTCCCAAAATATAAGAACGTGTTT 59.119 33.333 0.00 0.00 0.00 2.83
715 725 7.391620 TCTCTCCCAAAATATAAGAACGTGTT 58.608 34.615 0.00 0.00 0.00 3.32
716 726 6.942976 TCTCTCCCAAAATATAAGAACGTGT 58.057 36.000 0.00 0.00 0.00 4.49
717 727 6.480320 CCTCTCTCCCAAAATATAAGAACGTG 59.520 42.308 0.00 0.00 0.00 4.49
718 728 6.383147 TCCTCTCTCCCAAAATATAAGAACGT 59.617 38.462 0.00 0.00 0.00 3.99
719 729 6.817184 TCCTCTCTCCCAAAATATAAGAACG 58.183 40.000 0.00 0.00 0.00 3.95
720 730 8.268605 ACTTCCTCTCTCCCAAAATATAAGAAC 58.731 37.037 0.00 0.00 0.00 3.01
721 731 8.393959 ACTTCCTCTCTCCCAAAATATAAGAA 57.606 34.615 0.00 0.00 0.00 2.52
722 732 7.996758 ACTTCCTCTCTCCCAAAATATAAGA 57.003 36.000 0.00 0.00 0.00 2.10
723 733 9.549078 GTTACTTCCTCTCTCCCAAAATATAAG 57.451 37.037 0.00 0.00 0.00 1.73
724 734 9.280456 AGTTACTTCCTCTCTCCCAAAATATAA 57.720 33.333 0.00 0.00 0.00 0.98
725 735 8.855804 AGTTACTTCCTCTCTCCCAAAATATA 57.144 34.615 0.00 0.00 0.00 0.86
726 736 7.757242 AGTTACTTCCTCTCTCCCAAAATAT 57.243 36.000 0.00 0.00 0.00 1.28
727 737 7.569599 AAGTTACTTCCTCTCTCCCAAAATA 57.430 36.000 0.00 0.00 0.00 1.40
728 738 6.455690 AAGTTACTTCCTCTCTCCCAAAAT 57.544 37.500 0.00 0.00 0.00 1.82
729 739 5.906772 AAGTTACTTCCTCTCTCCCAAAA 57.093 39.130 0.00 0.00 0.00 2.44
730 740 8.674925 TTATAAGTTACTTCCTCTCTCCCAAA 57.325 34.615 0.00 0.00 0.00 3.28
731 741 7.899709 ACTTATAAGTTACTTCCTCTCTCCCAA 59.100 37.037 12.50 0.00 35.21 4.12
732 742 7.420029 ACTTATAAGTTACTTCCTCTCTCCCA 58.580 38.462 12.50 0.00 35.21 4.37
733 743 7.901283 ACTTATAAGTTACTTCCTCTCTCCC 57.099 40.000 12.50 0.00 35.21 4.30
762 1505 3.710677 CACTTCTCCTCCATCCTCTCAAT 59.289 47.826 0.00 0.00 0.00 2.57
772 1515 2.160205 CTACACGTCACTTCTCCTCCA 58.840 52.381 0.00 0.00 0.00 3.86
803 1546 1.389609 GGGTGGCCATCTGCATCAAG 61.390 60.000 17.44 0.00 43.89 3.02
906 1658 7.301420 TGACCAGGATCTATCTATCTGTTTCT 58.699 38.462 0.00 0.00 0.00 2.52
949 1709 1.539827 ACATTGGCGCTACTTTGGAAC 59.460 47.619 7.64 0.00 0.00 3.62
958 1718 2.418197 GGTAGAGTTGACATTGGCGCTA 60.418 50.000 7.64 0.00 0.00 4.26
1068 1828 2.301738 GGGGTGGAGGTGGAGGAAG 61.302 68.421 0.00 0.00 0.00 3.46
1085 1845 0.443869 CATGAAAGTGACGAAGCCGG 59.556 55.000 0.00 0.00 40.78 6.13
1206 1969 3.475494 ACGCAGTCACCACCACCA 61.475 61.111 0.00 0.00 29.74 4.17
1333 2099 1.699634 CTGGTTGGAGAAGGAGTTGGA 59.300 52.381 0.00 0.00 0.00 3.53
1536 2305 0.039074 CGTAGAGGTCCGCCATGATC 60.039 60.000 0.00 0.00 37.19 2.92
1657 2426 4.729918 CTGCTTCTTGGGCGGCCT 62.730 66.667 29.87 0.00 0.00 5.19
1660 2429 3.437795 CTGCTGCTTCTTGGGCGG 61.438 66.667 0.00 0.00 38.92 6.13
1663 2432 4.112341 GCGCTGCTGCTTCTTGGG 62.112 66.667 14.03 0.00 36.97 4.12
1942 2729 1.006805 CGTCGGGCAGAGGATCATC 60.007 63.158 0.00 0.00 37.82 2.92
1944 2731 2.044352 TCGTCGGGCAGAGGATCA 60.044 61.111 5.94 0.00 38.67 2.92
1982 2772 1.954146 TTGCACGACGAAGACAGCC 60.954 57.895 0.00 0.00 0.00 4.85
1985 2775 1.947146 CCGTTGCACGACGAAGACA 60.947 57.895 12.38 0.00 46.05 3.41
1989 2779 3.334751 CTGCCGTTGCACGACGAA 61.335 61.111 12.38 0.03 46.05 3.85
2431 3227 3.193263 CAGAAGAGGGTGTTCGATCATG 58.807 50.000 0.00 0.00 0.00 3.07
2675 3475 9.625747 TGCCATTCACTATGATAGTATCAAAAA 57.374 29.630 16.61 7.48 43.50 1.94
2676 3476 9.276590 CTGCCATTCACTATGATAGTATCAAAA 57.723 33.333 16.61 7.51 43.50 2.44
2677 3477 8.650490 TCTGCCATTCACTATGATAGTATCAAA 58.350 33.333 16.61 6.78 43.50 2.69
2678 3478 8.193953 TCTGCCATTCACTATGATAGTATCAA 57.806 34.615 16.61 6.01 43.50 2.57
2679 3479 7.781324 TCTGCCATTCACTATGATAGTATCA 57.219 36.000 15.10 15.10 44.55 2.15
2680 3480 8.473219 TGATCTGCCATTCACTATGATAGTATC 58.527 37.037 4.56 2.97 37.23 2.24
2681 3481 8.371571 TGATCTGCCATTCACTATGATAGTAT 57.628 34.615 4.56 0.00 37.23 2.12
2682 3482 7.781324 TGATCTGCCATTCACTATGATAGTA 57.219 36.000 4.56 0.00 37.23 1.82
2683 3483 6.676990 TGATCTGCCATTCACTATGATAGT 57.323 37.500 0.00 0.00 40.28 2.12
2684 3484 7.104290 ACATGATCTGCCATTCACTATGATAG 58.896 38.462 0.00 0.00 36.26 2.08
2685 3485 7.012661 ACATGATCTGCCATTCACTATGATA 57.987 36.000 0.00 0.00 36.26 2.15
2686 3486 5.877491 ACATGATCTGCCATTCACTATGAT 58.123 37.500 0.00 0.00 36.26 2.45
2687 3487 5.071384 AGACATGATCTGCCATTCACTATGA 59.929 40.000 0.00 0.00 35.81 2.15
2688 3488 5.306394 AGACATGATCTGCCATTCACTATG 58.694 41.667 0.00 0.00 35.81 2.23
2689 3489 5.563876 AGACATGATCTGCCATTCACTAT 57.436 39.130 0.00 0.00 35.81 2.12
2690 3490 5.363562 AAGACATGATCTGCCATTCACTA 57.636 39.130 0.00 0.00 37.88 2.74
2691 3491 3.928005 AGACATGATCTGCCATTCACT 57.072 42.857 0.00 0.00 35.81 3.41
2692 3492 7.918536 ATATAAGACATGATCTGCCATTCAC 57.081 36.000 0.00 0.00 37.88 3.18
2693 3493 8.929260 AAATATAAGACATGATCTGCCATTCA 57.071 30.769 0.00 0.00 37.88 2.57
2783 3583 9.078990 TCTACCTAGTTATCCTTACATCACATG 57.921 37.037 0.00 0.00 0.00 3.21
2860 3660 1.133025 GCAACATCGAACTTCCCCATG 59.867 52.381 0.00 0.00 0.00 3.66
2885 3685 0.980423 AGAGAGCCTTGTTCCACCTC 59.020 55.000 0.00 0.00 0.00 3.85
2911 3711 3.150767 CCAACATAGTCCACCCGAAAAA 58.849 45.455 0.00 0.00 0.00 1.94
2960 3761 1.668151 GCAGTGGTGTCGGAGGAAC 60.668 63.158 0.00 0.00 0.00 3.62
2999 3800 1.164662 CGTCCGAGGCGAGGATAAGA 61.165 60.000 7.22 0.00 40.30 2.10
3186 3987 9.851686 AAAGCATGTCTCCATATCTAATTAACA 57.148 29.630 0.00 0.00 0.00 2.41
3211 4012 7.851387 AAAATCTTTCCAAAACGGCTAAAAA 57.149 28.000 0.00 0.00 33.14 1.94
3309 4119 1.067212 CGATCCCCTTGTCTTACCTCG 59.933 57.143 0.00 0.00 0.00 4.63
3316 4126 0.611062 TGTCGTCGATCCCCTTGTCT 60.611 55.000 0.00 0.00 0.00 3.41
3396 4206 4.276678 TCGATCATGATCAATTTTCAGGCC 59.723 41.667 30.13 0.00 37.69 5.19
3403 4213 9.603298 CGATTTGTAATCGATCATGATCAATTT 57.397 29.630 30.13 21.88 43.59 1.82
3427 4237 3.004839 GCTATCACTAGAGTCCATTGCGA 59.995 47.826 0.00 0.00 0.00 5.10
3429 4239 4.327982 TGCTATCACTAGAGTCCATTGC 57.672 45.455 0.00 0.00 0.00 3.56
3430 4240 6.986250 TGTATGCTATCACTAGAGTCCATTG 58.014 40.000 0.00 0.00 0.00 2.82
3470 8288 2.883386 GCTCATGGGCTAATCCTTGAAG 59.117 50.000 11.30 0.00 39.47 3.02
3598 8418 0.963355 TCATGGGTAAACCTTGCGGC 60.963 55.000 0.00 0.00 42.58 6.53
3616 8436 4.462483 TCTTGCTCCATTGGTTTACCATTC 59.538 41.667 1.81 0.00 46.97 2.67
3634 8454 6.474102 TCCGAAAAACAAAGTTATTGTCTTGC 59.526 34.615 0.00 0.00 0.00 4.01
3642 8462 5.341617 TGCGTTTCCGAAAAACAAAGTTAT 58.658 33.333 12.04 0.00 35.63 1.89
3646 8466 3.175929 ACTGCGTTTCCGAAAAACAAAG 58.824 40.909 12.04 10.41 35.63 2.77
3665 8485 2.771089 TCTTCAATTGAGCAGCGAACT 58.229 42.857 8.41 0.00 0.00 3.01
3667 8487 4.771590 ATTTCTTCAATTGAGCAGCGAA 57.228 36.364 8.41 5.42 0.00 4.70
3669 8489 4.322804 GTGAATTTCTTCAATTGAGCAGCG 59.677 41.667 8.41 0.00 42.85 5.18
3688 8508 0.813610 CCAAGCACAGACACCGTGAA 60.814 55.000 5.28 0.00 36.43 3.18
3983 8803 7.493367 TGGTACTCCCAAAACAAACAAAATAG 58.507 34.615 0.00 0.00 41.50 1.73
3999 8819 5.010213 TGCTTGTACAAAAATTGGTACTCCC 59.990 40.000 10.03 2.08 40.34 4.30
4004 8824 6.868622 AGTTGTGCTTGTACAAAAATTGGTA 58.131 32.000 10.03 0.00 41.75 3.25
4009 8829 5.641209 TGCAAAGTTGTGCTTGTACAAAAAT 59.359 32.000 10.03 0.00 45.17 1.82
4027 8848 2.486982 CCACCACTCTCTTGATGCAAAG 59.513 50.000 0.00 0.00 0.00 2.77
4042 8863 7.108841 TGTGTAGATTAGATAGTTCCACCAC 57.891 40.000 0.00 0.00 0.00 4.16
4102 8923 9.952030 TGTGTAATAATCTGAACCAAACATAGA 57.048 29.630 0.00 0.00 0.00 1.98
4105 8926 7.975616 GCATGTGTAATAATCTGAACCAAACAT 59.024 33.333 0.00 0.00 0.00 2.71
4160 8981 5.009610 TGCAACTTACTTGGCCTAGAAAAAG 59.990 40.000 21.63 19.86 0.00 2.27
4162 8983 4.277423 GTGCAACTTACTTGGCCTAGAAAA 59.723 41.667 21.63 12.79 0.00 2.29
4177 8998 3.505680 TGTGACTTGACTTTGTGCAACTT 59.494 39.130 0.00 0.00 38.04 2.66
4178 8999 3.081061 TGTGACTTGACTTTGTGCAACT 58.919 40.909 0.00 0.00 38.04 3.16
4439 9270 7.939039 GGAATCATCTTATTGTGGTCTTATGGA 59.061 37.037 0.00 0.00 0.00 3.41
4447 9278 3.627577 GTGCGGAATCATCTTATTGTGGT 59.372 43.478 0.00 0.00 0.00 4.16
4467 9298 6.474819 TTGTTGTTATTCTGATACACCGTG 57.525 37.500 0.00 0.00 0.00 4.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.