Multiple sequence alignment - TraesCS1A01G032800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G032800 chr1A 100.000 3593 0 0 1 3593 15323612 15327204 0.000000e+00 6636.0
1 TraesCS1A01G032800 chr1D 91.515 2699 156 29 539 3201 14719740 14717079 0.000000e+00 3648.0
2 TraesCS1A01G032800 chr1D 87.726 277 34 0 104 380 14720017 14719741 1.240000e-84 324.0
3 TraesCS1A01G032800 chr3D 88.113 1489 177 0 1096 2584 419588676 419587188 0.000000e+00 1770.0
4 TraesCS1A01G032800 chr3A 87.844 1489 181 0 1096 2584 531629700 531631188 0.000000e+00 1748.0
5 TraesCS1A01G032800 chr3B 87.383 1498 183 6 1090 2584 545806118 545807612 0.000000e+00 1714.0
6 TraesCS1A01G032800 chrUn 86.654 1551 192 11 1043 2579 289483349 289484898 0.000000e+00 1703.0
7 TraesCS1A01G032800 chrUn 86.654 1551 192 11 1043 2579 296679596 296681145 0.000000e+00 1703.0
8 TraesCS1A01G032800 chr4D 86.258 1550 197 14 1043 2579 506852929 506854475 0.000000e+00 1668.0
9 TraesCS1A01G032800 chr4B 86.509 1312 166 8 1262 2565 664357594 664356286 0.000000e+00 1432.0
10 TraesCS1A01G032800 chr4B 83.544 79 7 3 707 780 180558622 180558699 6.440000e-08 69.4
11 TraesCS1A01G032800 chr2B 81.712 1449 253 12 1106 2548 787528743 787527301 0.000000e+00 1197.0
12 TraesCS1A01G032800 chr2D 88.462 52 5 1 696 746 48180424 48180373 1.080000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G032800 chr1A 15323612 15327204 3592 False 6636 6636 100.0000 1 3593 1 chr1A.!!$F1 3592
1 TraesCS1A01G032800 chr1D 14717079 14720017 2938 True 1986 3648 89.6205 104 3201 2 chr1D.!!$R1 3097
2 TraesCS1A01G032800 chr3D 419587188 419588676 1488 True 1770 1770 88.1130 1096 2584 1 chr3D.!!$R1 1488
3 TraesCS1A01G032800 chr3A 531629700 531631188 1488 False 1748 1748 87.8440 1096 2584 1 chr3A.!!$F1 1488
4 TraesCS1A01G032800 chr3B 545806118 545807612 1494 False 1714 1714 87.3830 1090 2584 1 chr3B.!!$F1 1494
5 TraesCS1A01G032800 chrUn 289483349 289484898 1549 False 1703 1703 86.6540 1043 2579 1 chrUn.!!$F1 1536
6 TraesCS1A01G032800 chrUn 296679596 296681145 1549 False 1703 1703 86.6540 1043 2579 1 chrUn.!!$F2 1536
7 TraesCS1A01G032800 chr4D 506852929 506854475 1546 False 1668 1668 86.2580 1043 2579 1 chr4D.!!$F1 1536
8 TraesCS1A01G032800 chr4B 664356286 664357594 1308 True 1432 1432 86.5090 1262 2565 1 chr4B.!!$R1 1303
9 TraesCS1A01G032800 chr2B 787527301 787528743 1442 True 1197 1197 81.7120 1106 2548 1 chr2B.!!$R1 1442

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
59 60 0.099436 GGCTCATGACCGCATTGAAC 59.901 55.0 8.97 0.00 30.68 3.18 F
60 61 0.247814 GCTCATGACCGCATTGAACG 60.248 55.0 2.23 0.00 30.68 3.95 F
184 185 0.316689 CCTTGTTGAACGCGTTGTCC 60.317 55.0 31.89 15.94 0.00 4.02 F
887 892 0.458025 CCCGGTAAGCGTCTCAGTTC 60.458 60.0 0.00 0.00 0.00 3.01 F
2289 2297 0.625849 AGAAAATGGTGAGGGCCGAT 59.374 50.0 0.00 0.00 0.00 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2038 2046 0.321653 GGCTTCTTCACCCACATCGT 60.322 55.000 0.00 0.0 0.00 3.73 R
2261 2269 0.871722 CACCATTTTCTCGAACGCCA 59.128 50.000 0.00 0.0 0.00 5.69 R
2289 2297 1.340248 GTCACAACCTCGAACCTCTCA 59.660 52.381 0.00 0.0 0.00 3.27 R
2403 2417 1.289380 GACCGCGTTCACCTCTTCT 59.711 57.895 4.92 0.0 0.00 2.85 R
3286 3334 0.104671 TTCGATGGCTCGCATCATGA 59.895 50.000 0.00 0.0 44.65 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.535526 ACCGATTTGCTAATGCCTTTTT 57.464 36.364 0.00 0.00 38.71 1.94
22 23 4.244862 ACCGATTTGCTAATGCCTTTTTG 58.755 39.130 0.00 0.00 38.71 2.44
23 24 3.618150 CCGATTTGCTAATGCCTTTTTGG 59.382 43.478 0.00 0.00 38.71 3.28
24 25 4.244862 CGATTTGCTAATGCCTTTTTGGT 58.755 39.130 0.00 0.00 38.71 3.67
25 26 4.327087 CGATTTGCTAATGCCTTTTTGGTC 59.673 41.667 0.00 0.00 38.71 4.02
26 27 4.953940 TTTGCTAATGCCTTTTTGGTCT 57.046 36.364 0.00 0.00 38.71 3.85
27 28 6.603940 ATTTGCTAATGCCTTTTTGGTCTA 57.396 33.333 0.00 0.00 38.71 2.59
28 29 6.412362 TTTGCTAATGCCTTTTTGGTCTAA 57.588 33.333 0.00 0.00 38.71 2.10
29 30 5.385509 TGCTAATGCCTTTTTGGTCTAAC 57.614 39.130 0.00 0.00 38.71 2.34
30 31 4.083003 TGCTAATGCCTTTTTGGTCTAACG 60.083 41.667 0.00 0.00 38.71 3.18
31 32 3.297830 AATGCCTTTTTGGTCTAACGC 57.702 42.857 0.00 0.00 38.35 4.84
32 33 1.975660 TGCCTTTTTGGTCTAACGCT 58.024 45.000 0.00 0.00 38.35 5.07
33 34 3.128852 TGCCTTTTTGGTCTAACGCTA 57.871 42.857 0.00 0.00 38.35 4.26
34 35 3.478509 TGCCTTTTTGGTCTAACGCTAA 58.521 40.909 0.00 0.00 38.35 3.09
35 36 3.500680 TGCCTTTTTGGTCTAACGCTAAG 59.499 43.478 0.00 0.00 38.35 2.18
36 37 3.501062 GCCTTTTTGGTCTAACGCTAAGT 59.499 43.478 0.00 0.00 38.35 2.24
37 38 4.612939 GCCTTTTTGGTCTAACGCTAAGTG 60.613 45.833 0.00 0.00 38.35 3.16
38 39 4.514066 CCTTTTTGGTCTAACGCTAAGTGT 59.486 41.667 0.00 0.00 0.00 3.55
39 40 5.008316 CCTTTTTGGTCTAACGCTAAGTGTT 59.992 40.000 0.00 0.00 39.64 3.32
40 41 5.412526 TTTTGGTCTAACGCTAAGTGTTG 57.587 39.130 0.00 0.00 36.88 3.33
41 42 3.034721 TGGTCTAACGCTAAGTGTTGG 57.965 47.619 0.00 0.00 36.88 3.77
42 43 1.730612 GGTCTAACGCTAAGTGTTGGC 59.269 52.381 0.00 0.00 36.88 4.52
43 44 2.612221 GGTCTAACGCTAAGTGTTGGCT 60.612 50.000 0.00 0.00 36.88 4.75
44 45 2.666994 GTCTAACGCTAAGTGTTGGCTC 59.333 50.000 0.00 0.00 36.88 4.70
45 46 2.297880 TCTAACGCTAAGTGTTGGCTCA 59.702 45.455 0.00 0.00 36.88 4.26
46 47 2.185004 AACGCTAAGTGTTGGCTCAT 57.815 45.000 0.00 0.00 34.83 2.90
47 48 1.442769 ACGCTAAGTGTTGGCTCATG 58.557 50.000 0.00 0.00 34.67 3.07
48 49 1.001974 ACGCTAAGTGTTGGCTCATGA 59.998 47.619 0.00 0.00 34.67 3.07
49 50 1.394917 CGCTAAGTGTTGGCTCATGAC 59.605 52.381 0.00 0.00 34.67 3.06
50 51 1.740025 GCTAAGTGTTGGCTCATGACC 59.260 52.381 0.00 0.00 33.94 4.02
51 52 2.002586 CTAAGTGTTGGCTCATGACCG 58.997 52.381 0.00 0.00 0.00 4.79
52 53 1.237285 AAGTGTTGGCTCATGACCGC 61.237 55.000 0.00 0.00 0.00 5.68
53 54 1.965930 GTGTTGGCTCATGACCGCA 60.966 57.895 8.97 7.85 0.00 5.69
54 55 1.002257 TGTTGGCTCATGACCGCAT 60.002 52.632 8.97 0.00 34.29 4.73
55 56 0.608856 TGTTGGCTCATGACCGCATT 60.609 50.000 8.97 0.00 30.68 3.56
56 57 0.179156 GTTGGCTCATGACCGCATTG 60.179 55.000 8.97 0.00 30.68 2.82
57 58 0.322366 TTGGCTCATGACCGCATTGA 60.322 50.000 8.97 0.00 30.68 2.57
58 59 0.322366 TGGCTCATGACCGCATTGAA 60.322 50.000 8.97 0.00 30.68 2.69
59 60 0.099436 GGCTCATGACCGCATTGAAC 59.901 55.000 8.97 0.00 30.68 3.18
60 61 0.247814 GCTCATGACCGCATTGAACG 60.248 55.000 2.23 0.00 30.68 3.95
61 62 1.358877 CTCATGACCGCATTGAACGA 58.641 50.000 0.00 0.00 30.68 3.85
62 63 1.935873 CTCATGACCGCATTGAACGAT 59.064 47.619 0.00 0.00 30.68 3.73
63 64 2.352651 CTCATGACCGCATTGAACGATT 59.647 45.455 0.00 0.00 30.68 3.34
64 65 2.746904 TCATGACCGCATTGAACGATTT 59.253 40.909 0.00 0.00 30.68 2.17
65 66 2.892373 TGACCGCATTGAACGATTTC 57.108 45.000 0.00 0.00 0.00 2.17
66 67 2.422597 TGACCGCATTGAACGATTTCT 58.577 42.857 0.00 0.00 32.36 2.52
67 68 2.415168 TGACCGCATTGAACGATTTCTC 59.585 45.455 0.00 0.00 32.36 2.87
68 69 2.673368 GACCGCATTGAACGATTTCTCT 59.327 45.455 0.00 0.00 32.36 3.10
69 70 3.074412 ACCGCATTGAACGATTTCTCTT 58.926 40.909 0.00 0.00 32.36 2.85
70 71 3.125316 ACCGCATTGAACGATTTCTCTTC 59.875 43.478 0.00 0.00 32.36 2.87
71 72 3.125146 CCGCATTGAACGATTTCTCTTCA 59.875 43.478 0.00 0.00 32.36 3.02
72 73 4.378356 CCGCATTGAACGATTTCTCTTCAA 60.378 41.667 0.00 0.00 35.24 2.69
73 74 5.146460 CGCATTGAACGATTTCTCTTCAAA 58.854 37.500 0.00 0.00 34.84 2.69
74 75 5.624900 CGCATTGAACGATTTCTCTTCAAAA 59.375 36.000 0.00 0.00 34.84 2.44
75 76 6.306356 CGCATTGAACGATTTCTCTTCAAAAT 59.694 34.615 0.00 0.00 34.84 1.82
76 77 7.442657 GCATTGAACGATTTCTCTTCAAAATG 58.557 34.615 0.00 0.00 34.84 2.32
77 78 7.115378 GCATTGAACGATTTCTCTTCAAAATGT 59.885 33.333 0.00 0.00 34.84 2.71
78 79 8.971321 CATTGAACGATTTCTCTTCAAAATGTT 58.029 29.630 0.00 0.00 34.84 2.71
79 80 7.912949 TGAACGATTTCTCTTCAAAATGTTG 57.087 32.000 0.00 0.00 32.73 3.33
80 81 7.702386 TGAACGATTTCTCTTCAAAATGTTGA 58.298 30.769 0.00 0.00 35.96 3.18
81 82 8.352201 TGAACGATTTCTCTTCAAAATGTTGAT 58.648 29.630 0.00 0.00 36.83 2.57
82 83 9.185192 GAACGATTTCTCTTCAAAATGTTGATT 57.815 29.630 0.00 0.00 43.29 2.57
83 84 8.733857 ACGATTTCTCTTCAAAATGTTGATTC 57.266 30.769 0.00 0.00 43.29 2.52
84 85 7.535258 ACGATTTCTCTTCAAAATGTTGATTCG 59.465 33.333 0.00 3.47 43.29 3.34
85 86 6.991485 TTTCTCTTCAAAATGTTGATTCGC 57.009 33.333 0.00 0.00 43.29 4.70
86 87 5.687770 TCTCTTCAAAATGTTGATTCGCA 57.312 34.783 0.00 0.00 43.29 5.10
87 88 5.451908 TCTCTTCAAAATGTTGATTCGCAC 58.548 37.500 0.00 0.00 43.29 5.34
88 89 5.008514 TCTCTTCAAAATGTTGATTCGCACA 59.991 36.000 0.00 0.00 43.29 4.57
89 90 4.975502 TCTTCAAAATGTTGATTCGCACAC 59.024 37.500 0.00 0.00 43.29 3.82
90 91 3.637432 TCAAAATGTTGATTCGCACACC 58.363 40.909 0.00 0.00 38.88 4.16
91 92 3.317711 TCAAAATGTTGATTCGCACACCT 59.682 39.130 0.00 0.00 38.88 4.00
92 93 3.559238 AAATGTTGATTCGCACACCTC 57.441 42.857 0.00 0.00 0.00 3.85
93 94 2.479566 ATGTTGATTCGCACACCTCT 57.520 45.000 0.00 0.00 0.00 3.69
94 95 2.254546 TGTTGATTCGCACACCTCTT 57.745 45.000 0.00 0.00 0.00 2.85
95 96 2.143122 TGTTGATTCGCACACCTCTTC 58.857 47.619 0.00 0.00 0.00 2.87
96 97 2.143122 GTTGATTCGCACACCTCTTCA 58.857 47.619 0.00 0.00 0.00 3.02
97 98 2.744202 GTTGATTCGCACACCTCTTCAT 59.256 45.455 0.00 0.00 0.00 2.57
98 99 3.885724 TGATTCGCACACCTCTTCATA 57.114 42.857 0.00 0.00 0.00 2.15
99 100 4.406648 TGATTCGCACACCTCTTCATAT 57.593 40.909 0.00 0.00 0.00 1.78
100 101 4.371786 TGATTCGCACACCTCTTCATATC 58.628 43.478 0.00 0.00 0.00 1.63
101 102 4.100035 TGATTCGCACACCTCTTCATATCT 59.900 41.667 0.00 0.00 0.00 1.98
102 103 3.443099 TCGCACACCTCTTCATATCTG 57.557 47.619 0.00 0.00 0.00 2.90
125 126 3.186613 GCTGAAAACTCTTGTCCTAACCG 59.813 47.826 0.00 0.00 0.00 4.44
131 132 7.177216 TGAAAACTCTTGTCCTAACCGATACTA 59.823 37.037 0.00 0.00 0.00 1.82
135 136 3.301794 TGTCCTAACCGATACTAGCCA 57.698 47.619 0.00 0.00 0.00 4.75
145 146 1.048724 ATACTAGCCAGGCTCCGCAA 61.049 55.000 20.38 0.00 40.44 4.85
146 147 1.048724 TACTAGCCAGGCTCCGCAAT 61.049 55.000 20.38 0.51 40.44 3.56
150 151 3.197790 CCAGGCTCCGCAATGACG 61.198 66.667 0.00 0.00 0.00 4.35
169 170 1.136252 CGAACTTGCGTCATGACCTTG 60.136 52.381 20.03 7.53 0.00 3.61
177 178 1.398451 CGTCATGACCTTGTTGAACGC 60.398 52.381 20.03 0.00 0.00 4.84
184 185 0.316689 CCTTGTTGAACGCGTTGTCC 60.317 55.000 31.89 15.94 0.00 4.02
187 188 0.741574 TGTTGAACGCGTTGTCCACT 60.742 50.000 31.89 2.14 0.00 4.00
213 214 0.539438 TGTGTTGGTCCTCATTGGCC 60.539 55.000 0.00 0.00 35.26 5.36
219 220 1.224592 GTCCTCATTGGCCGGTCAT 59.775 57.895 10.94 0.00 35.26 3.06
220 221 1.097547 GTCCTCATTGGCCGGTCATG 61.098 60.000 10.94 10.96 35.26 3.07
226 227 0.623723 ATTGGCCGGTCATGGTAACT 59.376 50.000 10.94 0.00 37.61 2.24
228 229 0.828022 TGGCCGGTCATGGTAACTAG 59.172 55.000 3.51 0.00 37.61 2.57
231 232 1.068741 GCCGGTCATGGTAACTAGGAG 59.931 57.143 1.90 0.00 37.61 3.69
256 257 6.183360 GGAAAATCCTTGTCCAAGTTATCTCG 60.183 42.308 6.31 0.00 36.72 4.04
257 258 3.887621 TCCTTGTCCAAGTTATCTCGG 57.112 47.619 6.31 0.00 36.72 4.63
259 260 2.236395 CCTTGTCCAAGTTATCTCGGGT 59.764 50.000 6.31 0.00 36.72 5.28
294 295 3.304996 CGATGTCGTGAGGATGCTTATCT 60.305 47.826 0.00 0.00 34.11 1.98
311 312 2.084610 TCTCTCATGAAGGCGTTGTG 57.915 50.000 0.00 0.00 0.00 3.33
371 372 6.875926 TCATAGCATGTAATGATTCGATCG 57.124 37.500 9.36 9.36 42.55 3.69
375 376 8.811378 CATAGCATGTAATGATTCGATCGTAAT 58.189 33.333 15.94 13.02 42.55 1.89
380 381 5.989168 TGTAATGATTCGATCGTAATTGCCT 59.011 36.000 15.94 3.63 0.00 4.75
381 382 6.481976 TGTAATGATTCGATCGTAATTGCCTT 59.518 34.615 15.94 8.22 0.00 4.35
382 383 6.377327 AATGATTCGATCGTAATTGCCTTT 57.623 33.333 15.94 4.57 0.00 3.11
383 384 5.155509 TGATTCGATCGTAATTGCCTTTG 57.844 39.130 15.94 0.00 0.00 2.77
385 386 5.123186 TGATTCGATCGTAATTGCCTTTGTT 59.877 36.000 15.94 0.00 0.00 2.83
386 387 4.593597 TCGATCGTAATTGCCTTTGTTC 57.406 40.909 15.94 0.00 0.00 3.18
387 388 4.250464 TCGATCGTAATTGCCTTTGTTCT 58.750 39.130 15.94 0.00 0.00 3.01
388 389 4.092821 TCGATCGTAATTGCCTTTGTTCTG 59.907 41.667 15.94 0.00 0.00 3.02
389 390 3.552604 TCGTAATTGCCTTTGTTCTGC 57.447 42.857 0.00 0.00 0.00 4.26
390 391 2.881513 TCGTAATTGCCTTTGTTCTGCA 59.118 40.909 0.00 0.00 0.00 4.41
391 392 2.979813 CGTAATTGCCTTTGTTCTGCAC 59.020 45.455 0.00 0.00 34.16 4.57
392 393 3.304659 CGTAATTGCCTTTGTTCTGCACT 60.305 43.478 0.00 0.00 34.16 4.40
393 394 3.375782 AATTGCCTTTGTTCTGCACTC 57.624 42.857 0.00 0.00 34.16 3.51
394 395 2.057137 TTGCCTTTGTTCTGCACTCT 57.943 45.000 0.00 0.00 34.16 3.24
395 396 2.928801 TGCCTTTGTTCTGCACTCTA 57.071 45.000 0.00 0.00 0.00 2.43
396 397 2.494059 TGCCTTTGTTCTGCACTCTAC 58.506 47.619 0.00 0.00 0.00 2.59
397 398 2.104792 TGCCTTTGTTCTGCACTCTACT 59.895 45.455 0.00 0.00 0.00 2.57
398 399 3.142174 GCCTTTGTTCTGCACTCTACTT 58.858 45.455 0.00 0.00 0.00 2.24
399 400 4.202315 TGCCTTTGTTCTGCACTCTACTTA 60.202 41.667 0.00 0.00 0.00 2.24
400 401 4.755123 GCCTTTGTTCTGCACTCTACTTAA 59.245 41.667 0.00 0.00 0.00 1.85
401 402 5.412904 GCCTTTGTTCTGCACTCTACTTAAT 59.587 40.000 0.00 0.00 0.00 1.40
402 403 6.594159 GCCTTTGTTCTGCACTCTACTTAATA 59.406 38.462 0.00 0.00 0.00 0.98
403 404 7.119262 GCCTTTGTTCTGCACTCTACTTAATAA 59.881 37.037 0.00 0.00 0.00 1.40
404 405 9.167311 CCTTTGTTCTGCACTCTACTTAATAAT 57.833 33.333 0.00 0.00 0.00 1.28
414 415 9.911138 GCACTCTACTTAATAATTACTACCTCC 57.089 37.037 0.00 0.00 0.00 4.30
424 425 5.827326 AATTACTACCTCCATCCTAAGGC 57.173 43.478 0.00 0.00 36.01 4.35
425 426 1.705873 ACTACCTCCATCCTAAGGCG 58.294 55.000 0.00 0.00 36.01 5.52
426 427 1.063114 ACTACCTCCATCCTAAGGCGT 60.063 52.381 0.00 0.00 36.01 5.68
427 428 2.176364 ACTACCTCCATCCTAAGGCGTA 59.824 50.000 0.00 0.00 36.01 4.42
428 429 1.411041 ACCTCCATCCTAAGGCGTAC 58.589 55.000 0.00 0.00 36.01 3.67
429 430 1.342674 ACCTCCATCCTAAGGCGTACA 60.343 52.381 0.00 0.00 36.01 2.90
430 431 1.971357 CCTCCATCCTAAGGCGTACAT 59.029 52.381 0.00 0.00 0.00 2.29
431 432 2.368875 CCTCCATCCTAAGGCGTACATT 59.631 50.000 0.00 0.00 0.00 2.71
432 433 3.576982 CCTCCATCCTAAGGCGTACATTA 59.423 47.826 0.00 0.00 0.00 1.90
433 434 4.039973 CCTCCATCCTAAGGCGTACATTAA 59.960 45.833 0.00 0.00 0.00 1.40
434 435 5.209818 TCCATCCTAAGGCGTACATTAAG 57.790 43.478 0.00 0.00 0.00 1.85
435 436 4.652421 TCCATCCTAAGGCGTACATTAAGT 59.348 41.667 0.00 0.00 0.00 2.24
436 437 4.989168 CCATCCTAAGGCGTACATTAAGTC 59.011 45.833 0.00 0.00 0.00 3.01
437 438 5.452776 CCATCCTAAGGCGTACATTAAGTCA 60.453 44.000 0.00 0.00 0.00 3.41
438 439 5.664294 TCCTAAGGCGTACATTAAGTCAA 57.336 39.130 0.00 0.00 0.00 3.18
439 440 6.229936 TCCTAAGGCGTACATTAAGTCAAT 57.770 37.500 0.00 0.00 0.00 2.57
479 480 5.861222 ATATATGTGTGTGTGTGTGTGTG 57.139 39.130 0.00 0.00 0.00 3.82
480 481 1.819928 ATGTGTGTGTGTGTGTGTGT 58.180 45.000 0.00 0.00 0.00 3.72
481 482 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
482 483 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
483 484 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
484 485 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
485 486 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
486 487 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
487 488 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
488 489 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
489 490 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
490 491 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
491 492 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
492 493 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
493 494 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
494 495 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
495 496 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
496 497 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
497 498 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
498 499 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
499 500 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
500 501 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
501 502 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
502 503 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
503 504 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
504 505 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
505 506 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
506 507 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
507 508 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
508 509 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
509 510 2.070028 GTGTGTGTGTGTGTGTGTGTA 58.930 47.619 0.00 0.00 0.00 2.90
510 511 2.675844 GTGTGTGTGTGTGTGTGTGTAT 59.324 45.455 0.00 0.00 0.00 2.29
511 512 2.675348 TGTGTGTGTGTGTGTGTGTATG 59.325 45.455 0.00 0.00 0.00 2.39
512 513 2.675844 GTGTGTGTGTGTGTGTGTATGT 59.324 45.455 0.00 0.00 0.00 2.29
513 514 3.866327 GTGTGTGTGTGTGTGTGTATGTA 59.134 43.478 0.00 0.00 0.00 2.29
514 515 4.509970 GTGTGTGTGTGTGTGTGTATGTAT 59.490 41.667 0.00 0.00 0.00 2.29
515 516 5.692654 GTGTGTGTGTGTGTGTGTATGTATA 59.307 40.000 0.00 0.00 0.00 1.47
516 517 6.367695 GTGTGTGTGTGTGTGTGTATGTATAT 59.632 38.462 0.00 0.00 0.00 0.86
517 518 7.542824 GTGTGTGTGTGTGTGTGTATGTATATA 59.457 37.037 0.00 0.00 0.00 0.86
518 519 8.254508 TGTGTGTGTGTGTGTGTATGTATATAT 58.745 33.333 0.00 0.00 0.00 0.86
519 520 9.738832 GTGTGTGTGTGTGTGTATGTATATATA 57.261 33.333 0.00 0.00 0.00 0.86
540 541 8.840833 ATATATAGACACACACACACACAAAA 57.159 30.769 0.00 0.00 0.00 2.44
541 542 5.888691 ATAGACACACACACACACAAAAA 57.111 34.783 0.00 0.00 0.00 1.94
542 543 4.782019 AGACACACACACACACAAAAAT 57.218 36.364 0.00 0.00 0.00 1.82
543 544 5.888691 AGACACACACACACACAAAAATA 57.111 34.783 0.00 0.00 0.00 1.40
544 545 6.449635 AGACACACACACACACAAAAATAT 57.550 33.333 0.00 0.00 0.00 1.28
545 546 6.264832 AGACACACACACACACAAAAATATG 58.735 36.000 0.00 0.00 0.00 1.78
546 547 6.094742 AGACACACACACACACAAAAATATGA 59.905 34.615 0.00 0.00 0.00 2.15
547 548 6.625362 ACACACACACACACAAAAATATGAA 58.375 32.000 0.00 0.00 0.00 2.57
548 549 6.751425 ACACACACACACACAAAAATATGAAG 59.249 34.615 0.00 0.00 0.00 3.02
549 550 5.748152 ACACACACACACAAAAATATGAAGC 59.252 36.000 0.00 0.00 0.00 3.86
710 711 1.609208 CATCTATTTTGGGGCGGAGG 58.391 55.000 0.00 0.00 0.00 4.30
735 736 7.362920 GGGAGTAATAAAAATGACTGTGTGCAT 60.363 37.037 0.00 0.00 0.00 3.96
800 802 7.437793 AAATTAAAAGCATGGTGAAATGTGG 57.562 32.000 0.00 0.00 0.00 4.17
802 804 4.895668 AAAAGCATGGTGAAATGTGGAT 57.104 36.364 0.00 0.00 0.00 3.41
859 864 8.823220 AAACCTTATTCATAGTAGCACCAAAT 57.177 30.769 0.00 0.00 0.00 2.32
887 892 0.458025 CCCGGTAAGCGTCTCAGTTC 60.458 60.000 0.00 0.00 0.00 3.01
896 901 6.985059 GGTAAGCGTCTCAGTTCCTATAAATT 59.015 38.462 0.00 0.00 0.00 1.82
911 916 0.831711 AAATTGAAACCGGGGCTGCT 60.832 50.000 6.32 0.00 0.00 4.24
913 918 2.424842 ATTGAAACCGGGGCTGCTCA 62.425 55.000 6.32 0.00 0.00 4.26
915 920 4.351054 AAACCGGGGCTGCTCAGG 62.351 66.667 17.50 17.50 0.00 3.86
1103 1111 2.372264 GGAGAAGAAGATGCAATGCCA 58.628 47.619 1.53 0.00 0.00 4.92
1170 1178 5.106237 GGTAATCGACTTCATAGCCGAGTAT 60.106 44.000 0.00 0.00 39.65 2.12
1174 1182 4.818005 TCGACTTCATAGCCGAGTATTACA 59.182 41.667 0.00 0.00 31.03 2.41
1239 1247 3.710722 CTCCGCAACCTGCTCCCT 61.711 66.667 0.00 0.00 42.25 4.20
1638 1646 0.891373 ACAGGATCTGTGACCTCGTG 59.109 55.000 0.00 0.00 43.63 4.35
2038 2046 2.833533 GCCAACAACGACTGCTGCA 61.834 57.895 0.88 0.88 0.00 4.41
2289 2297 0.625849 AGAAAATGGTGAGGGCCGAT 59.374 50.000 0.00 0.00 0.00 4.18
2362 2370 1.227823 CGCCCACAGGACAAGTTCA 60.228 57.895 0.00 0.00 33.47 3.18
2403 2417 4.356979 CTCAACCGAGGCCTCCTA 57.643 61.111 27.20 7.05 35.44 2.94
2406 2420 0.040646 TCAACCGAGGCCTCCTAGAA 59.959 55.000 27.20 7.43 31.76 2.10
2588 2606 6.441093 GATGGAGATCATCTACAGCTCTAG 57.559 45.833 7.98 0.00 41.36 2.43
2605 2623 4.439837 GCTCTAGGTAACCTACGAACTTGG 60.440 50.000 0.00 0.00 34.61 3.61
2606 2624 4.666512 TCTAGGTAACCTACGAACTTGGT 58.333 43.478 0.00 0.00 34.61 3.67
2635 2653 3.485463 ACTTCGATTCAAGGTTCACCA 57.515 42.857 0.00 0.00 38.89 4.17
2767 2796 9.772973 ACTATTGTTTACATTTTTCCCTTTTCC 57.227 29.630 0.00 0.00 0.00 3.13
2839 2868 9.970395 TTCGACGGTTATATACATAAAGTGATT 57.030 29.630 0.00 0.00 0.00 2.57
2884 2914 3.049912 GTGTTCCCGCTTCATTGTTTTC 58.950 45.455 0.00 0.00 0.00 2.29
2885 2915 2.690497 TGTTCCCGCTTCATTGTTTTCA 59.310 40.909 0.00 0.00 0.00 2.69
2893 2923 6.034898 CCCGCTTCATTGTTTTCATTGTATTC 59.965 38.462 0.00 0.00 34.16 1.75
2894 2924 6.808212 CCGCTTCATTGTTTTCATTGTATTCT 59.192 34.615 0.00 0.00 34.16 2.40
2895 2925 7.329226 CCGCTTCATTGTTTTCATTGTATTCTT 59.671 33.333 0.00 0.00 34.16 2.52
2896 2926 8.157813 CGCTTCATTGTTTTCATTGTATTCTTG 58.842 33.333 0.00 0.00 34.16 3.02
2897 2927 8.981647 GCTTCATTGTTTTCATTGTATTCTTGT 58.018 29.630 0.00 0.00 34.16 3.16
2928 2958 8.375493 ACTTGTGATTCTACTACATCCCTTAA 57.625 34.615 0.00 0.00 0.00 1.85
2929 2959 8.478877 ACTTGTGATTCTACTACATCCCTTAAG 58.521 37.037 0.00 0.00 0.00 1.85
2941 2971 8.483758 ACTACATCCCTTAAGTTATTGAATCGT 58.516 33.333 0.97 0.00 0.00 3.73
2944 2974 6.978343 TCCCTTAAGTTATTGAATCGTGTG 57.022 37.500 0.97 0.00 0.00 3.82
2955 2985 3.690422 TGAATCGTGTGTTTCTGCAAAC 58.310 40.909 0.00 0.00 42.16 2.93
2973 3004 5.163673 TGCAAACATGTATGCATTGACGTAT 60.164 36.000 3.54 0.00 46.87 3.06
3015 3046 9.039870 CAAAACAATGTATTGGCAAACTCTTAA 57.960 29.630 3.01 0.00 41.96 1.85
3023 3054 5.606348 TTGGCAAACTCTTAAACATTGGT 57.394 34.783 0.00 0.00 0.00 3.67
3030 3061 7.657336 CAAACTCTTAAACATTGGTGTACCAT 58.343 34.615 4.31 0.00 46.97 3.55
3052 3083 3.377346 ACTGCAGATCGGTGCTATTAG 57.623 47.619 23.35 0.67 44.32 1.73
3055 3086 1.702886 CAGATCGGTGCTATTAGGCG 58.297 55.000 0.00 0.00 34.52 5.52
3062 3108 2.673893 CGGTGCTATTAGGCGCATATCA 60.674 50.000 10.83 0.00 43.61 2.15
3074 3120 4.330894 AGGCGCATATCATCGAATTATGTG 59.669 41.667 10.83 15.97 33.32 3.21
3078 3124 5.251081 GCATATCATCGAATTATGTGCGAC 58.749 41.667 9.71 0.00 36.83 5.19
3103 3150 8.999431 ACGAAGTTATCACACACATTAGAAAAT 58.001 29.630 0.00 0.00 37.78 1.82
3128 3175 3.502191 TTGTGTGCCTCAAAGTGAAAC 57.498 42.857 0.00 0.00 0.00 2.78
3129 3176 1.400142 TGTGTGCCTCAAAGTGAAACG 59.600 47.619 0.00 0.00 45.86 3.60
3140 3188 4.083537 TCAAAGTGAAACGTATGTGATGGC 60.084 41.667 0.00 0.00 45.86 4.40
3143 3191 2.486203 GTGAAACGTATGTGATGGCCAA 59.514 45.455 10.96 0.00 0.00 4.52
3150 3198 2.553962 TGTGATGGCCAACACATCG 58.446 52.632 36.80 0.00 45.90 3.84
3151 3199 1.137404 GTGATGGCCAACACATCGC 59.863 57.895 34.04 19.27 45.90 4.58
3173 3221 2.235016 CGTGATTGGGGAAGGAAAACA 58.765 47.619 0.00 0.00 0.00 2.83
3175 3223 3.367292 CGTGATTGGGGAAGGAAAACATG 60.367 47.826 0.00 0.00 0.00 3.21
3179 3227 0.608130 GGGGAAGGAAAACATGGTGC 59.392 55.000 0.00 0.00 0.00 5.01
3184 3232 3.306019 GGAAGGAAAACATGGTGCGATTT 60.306 43.478 0.00 0.00 0.00 2.17
3185 3233 3.575965 AGGAAAACATGGTGCGATTTC 57.424 42.857 0.00 0.00 0.00 2.17
3186 3234 2.095263 AGGAAAACATGGTGCGATTTCG 60.095 45.455 0.00 0.00 43.27 3.46
3201 3249 3.483574 CGATTTCGTGCACATGGTTCTAC 60.484 47.826 18.64 0.00 34.11 2.59
3202 3250 2.831685 TTCGTGCACATGGTTCTACT 57.168 45.000 18.64 0.00 0.00 2.57
3203 3251 2.078849 TCGTGCACATGGTTCTACTG 57.921 50.000 18.64 0.00 0.00 2.74
3204 3252 1.616374 TCGTGCACATGGTTCTACTGA 59.384 47.619 18.64 0.00 0.00 3.41
3205 3253 2.036604 TCGTGCACATGGTTCTACTGAA 59.963 45.455 18.64 0.00 0.00 3.02
3206 3254 2.805671 CGTGCACATGGTTCTACTGAAA 59.194 45.455 18.64 0.00 33.52 2.69
3207 3255 3.436704 CGTGCACATGGTTCTACTGAAAT 59.563 43.478 18.64 0.00 33.52 2.17
3208 3256 4.629634 CGTGCACATGGTTCTACTGAAATA 59.370 41.667 18.64 0.00 33.52 1.40
3209 3257 5.121611 CGTGCACATGGTTCTACTGAAATAA 59.878 40.000 18.64 0.00 33.52 1.40
3210 3258 6.546395 GTGCACATGGTTCTACTGAAATAAG 58.454 40.000 13.17 0.00 33.52 1.73
3211 3259 5.123820 TGCACATGGTTCTACTGAAATAAGC 59.876 40.000 0.00 0.00 33.52 3.09
3212 3260 5.123820 GCACATGGTTCTACTGAAATAAGCA 59.876 40.000 0.00 0.00 33.52 3.91
3213 3261 6.183360 GCACATGGTTCTACTGAAATAAGCAT 60.183 38.462 0.00 0.00 39.81 3.79
3215 3263 7.325660 CATGGTTCTACTGAAATAAGCATGT 57.674 36.000 14.62 0.00 45.69 3.21
3216 3264 6.741992 TGGTTCTACTGAAATAAGCATGTG 57.258 37.500 0.00 0.00 33.52 3.21
3217 3265 6.472016 TGGTTCTACTGAAATAAGCATGTGA 58.528 36.000 0.00 0.00 33.52 3.58
3218 3266 6.595326 TGGTTCTACTGAAATAAGCATGTGAG 59.405 38.462 0.00 0.00 33.52 3.51
3219 3267 6.818644 GGTTCTACTGAAATAAGCATGTGAGA 59.181 38.462 0.00 0.00 33.52 3.27
3220 3268 7.497249 GGTTCTACTGAAATAAGCATGTGAGAT 59.503 37.037 0.00 0.00 33.52 2.75
3221 3269 8.333908 GTTCTACTGAAATAAGCATGTGAGATG 58.666 37.037 0.00 0.00 33.52 2.90
3222 3270 7.785033 TCTACTGAAATAAGCATGTGAGATGA 58.215 34.615 0.00 0.00 0.00 2.92
3223 3271 8.260114 TCTACTGAAATAAGCATGTGAGATGAA 58.740 33.333 0.00 0.00 0.00 2.57
3224 3272 7.081526 ACTGAAATAAGCATGTGAGATGAAC 57.918 36.000 0.00 0.00 0.00 3.18
3225 3273 6.883217 ACTGAAATAAGCATGTGAGATGAACT 59.117 34.615 0.00 0.00 0.00 3.01
3226 3274 7.080353 TGAAATAAGCATGTGAGATGAACTG 57.920 36.000 0.00 0.00 0.00 3.16
3227 3275 6.880529 TGAAATAAGCATGTGAGATGAACTGA 59.119 34.615 0.00 0.00 0.00 3.41
3228 3276 7.391275 TGAAATAAGCATGTGAGATGAACTGAA 59.609 33.333 0.00 0.00 0.00 3.02
3229 3277 7.876936 AATAAGCATGTGAGATGAACTGAAT 57.123 32.000 0.00 0.00 0.00 2.57
3230 3278 7.876936 ATAAGCATGTGAGATGAACTGAATT 57.123 32.000 0.00 0.00 0.00 2.17
3231 3279 8.969260 ATAAGCATGTGAGATGAACTGAATTA 57.031 30.769 0.00 0.00 0.00 1.40
3232 3280 7.876936 AAGCATGTGAGATGAACTGAATTAT 57.123 32.000 0.00 0.00 0.00 1.28
3233 3281 7.493743 AGCATGTGAGATGAACTGAATTATC 57.506 36.000 0.00 0.00 0.00 1.75
3234 3282 6.202379 AGCATGTGAGATGAACTGAATTATCG 59.798 38.462 0.00 0.00 0.00 2.92
3235 3283 5.973651 TGTGAGATGAACTGAATTATCGC 57.026 39.130 0.00 0.00 0.00 4.58
3236 3284 5.418676 TGTGAGATGAACTGAATTATCGCA 58.581 37.500 0.00 0.00 0.00 5.10
3237 3285 5.291858 TGTGAGATGAACTGAATTATCGCAC 59.708 40.000 11.39 11.39 44.89 5.34
3238 3286 5.291858 GTGAGATGAACTGAATTATCGCACA 59.708 40.000 12.72 0.00 44.41 4.57
3239 3287 5.291858 TGAGATGAACTGAATTATCGCACAC 59.708 40.000 0.00 0.00 0.00 3.82
3240 3288 3.989705 TGAACTGAATTATCGCACACG 57.010 42.857 0.00 0.00 42.01 4.49
3241 3289 3.322369 TGAACTGAATTATCGCACACGT 58.678 40.909 0.00 0.00 41.18 4.49
3242 3290 3.743911 TGAACTGAATTATCGCACACGTT 59.256 39.130 0.00 0.00 41.18 3.99
3243 3291 4.212425 TGAACTGAATTATCGCACACGTTT 59.788 37.500 0.00 0.00 41.18 3.60
3244 3292 4.742438 ACTGAATTATCGCACACGTTTT 57.258 36.364 0.00 0.00 41.18 2.43
3245 3293 5.103290 ACTGAATTATCGCACACGTTTTT 57.897 34.783 0.00 0.00 41.18 1.94
3263 3311 4.481930 TTTTTCTAATGCCGTGTGTCTG 57.518 40.909 0.00 0.00 0.00 3.51
3264 3312 2.093306 TTCTAATGCCGTGTGTCTGG 57.907 50.000 0.00 0.00 0.00 3.86
3265 3313 0.973632 TCTAATGCCGTGTGTCTGGT 59.026 50.000 0.00 0.00 0.00 4.00
3266 3314 1.346395 TCTAATGCCGTGTGTCTGGTT 59.654 47.619 0.00 0.00 0.00 3.67
3267 3315 1.464608 CTAATGCCGTGTGTCTGGTTG 59.535 52.381 0.00 0.00 0.00 3.77
3268 3316 0.465460 AATGCCGTGTGTCTGGTTGT 60.465 50.000 0.00 0.00 0.00 3.32
3269 3317 0.394938 ATGCCGTGTGTCTGGTTGTA 59.605 50.000 0.00 0.00 0.00 2.41
3270 3318 0.531090 TGCCGTGTGTCTGGTTGTAC 60.531 55.000 0.00 0.00 0.00 2.90
3271 3319 0.249741 GCCGTGTGTCTGGTTGTACT 60.250 55.000 0.00 0.00 0.00 2.73
3272 3320 1.497991 CCGTGTGTCTGGTTGTACTG 58.502 55.000 0.00 0.00 0.00 2.74
3273 3321 1.067974 CCGTGTGTCTGGTTGTACTGA 59.932 52.381 0.00 0.00 0.00 3.41
3274 3322 2.482316 CCGTGTGTCTGGTTGTACTGAA 60.482 50.000 0.00 0.00 0.00 3.02
3275 3323 3.191669 CGTGTGTCTGGTTGTACTGAAA 58.808 45.455 0.00 0.00 0.00 2.69
3276 3324 3.619483 CGTGTGTCTGGTTGTACTGAAAA 59.381 43.478 0.00 0.00 0.00 2.29
3277 3325 4.093703 CGTGTGTCTGGTTGTACTGAAAAA 59.906 41.667 0.00 0.00 0.00 1.94
3295 3343 2.519377 AAATTGCCCATCATGATGCG 57.481 45.000 27.24 21.01 37.49 4.73
3296 3344 1.694844 AATTGCCCATCATGATGCGA 58.305 45.000 27.24 18.14 37.49 5.10
3297 3345 1.244816 ATTGCCCATCATGATGCGAG 58.755 50.000 27.24 18.81 37.49 5.03
3298 3346 1.449726 TTGCCCATCATGATGCGAGC 61.450 55.000 27.24 25.98 37.49 5.03
3299 3347 2.623915 GCCCATCATGATGCGAGCC 61.624 63.158 27.24 10.78 37.49 4.70
3300 3348 1.228033 CCCATCATGATGCGAGCCA 60.228 57.895 27.24 0.00 37.49 4.75
3301 3349 0.608308 CCCATCATGATGCGAGCCAT 60.608 55.000 27.24 0.00 37.49 4.40
3316 3364 4.946784 GAGCCATCGAACACATAACTTT 57.053 40.909 0.00 0.00 0.00 2.66
3317 3365 5.296813 GAGCCATCGAACACATAACTTTT 57.703 39.130 0.00 0.00 0.00 2.27
3318 3366 6.417191 GAGCCATCGAACACATAACTTTTA 57.583 37.500 0.00 0.00 0.00 1.52
3319 3367 6.422776 AGCCATCGAACACATAACTTTTAG 57.577 37.500 0.00 0.00 0.00 1.85
3320 3368 6.170506 AGCCATCGAACACATAACTTTTAGA 58.829 36.000 0.00 0.00 0.00 2.10
3321 3369 6.823689 AGCCATCGAACACATAACTTTTAGAT 59.176 34.615 0.00 0.00 0.00 1.98
3322 3370 7.011482 AGCCATCGAACACATAACTTTTAGATC 59.989 37.037 0.00 0.00 0.00 2.75
3323 3371 7.011482 GCCATCGAACACATAACTTTTAGATCT 59.989 37.037 0.00 0.00 0.00 2.75
3324 3372 9.529325 CCATCGAACACATAACTTTTAGATCTA 57.471 33.333 0.00 0.00 0.00 1.98
3327 3375 9.447040 TCGAACACATAACTTTTAGATCTATCG 57.553 33.333 2.58 5.36 0.00 2.92
3328 3376 9.234384 CGAACACATAACTTTTAGATCTATCGT 57.766 33.333 2.58 0.00 0.00 3.73
3331 3379 9.737427 ACACATAACTTTTAGATCTATCGTGAG 57.263 33.333 2.58 0.84 0.00 3.51
3332 3380 8.695284 CACATAACTTTTAGATCTATCGTGAGC 58.305 37.037 2.58 0.00 0.00 4.26
3333 3381 7.591795 ACATAACTTTTAGATCTATCGTGAGCG 59.408 37.037 2.58 0.00 39.92 5.03
3346 3394 4.772046 TCGTGAGCGATTTATAGCAAAC 57.228 40.909 0.00 0.00 42.81 2.93
3347 3395 4.177783 TCGTGAGCGATTTATAGCAAACA 58.822 39.130 0.00 0.00 42.81 2.83
3348 3396 4.267690 TCGTGAGCGATTTATAGCAAACAG 59.732 41.667 0.00 0.00 42.81 3.16
3349 3397 4.267690 CGTGAGCGATTTATAGCAAACAGA 59.732 41.667 0.00 0.00 41.33 3.41
3350 3398 5.493735 GTGAGCGATTTATAGCAAACAGAC 58.506 41.667 0.00 0.00 35.48 3.51
3351 3399 4.570772 TGAGCGATTTATAGCAAACAGACC 59.429 41.667 0.00 0.00 35.48 3.85
3352 3400 4.513442 AGCGATTTATAGCAAACAGACCA 58.487 39.130 0.00 0.00 35.48 4.02
3353 3401 5.126067 AGCGATTTATAGCAAACAGACCAT 58.874 37.500 0.00 0.00 35.48 3.55
3354 3402 5.590259 AGCGATTTATAGCAAACAGACCATT 59.410 36.000 0.00 0.00 35.48 3.16
3355 3403 6.095440 AGCGATTTATAGCAAACAGACCATTT 59.905 34.615 0.00 0.00 35.48 2.32
3356 3404 6.751888 GCGATTTATAGCAAACAGACCATTTT 59.248 34.615 0.00 0.00 0.00 1.82
3357 3405 7.913297 GCGATTTATAGCAAACAGACCATTTTA 59.087 33.333 0.00 0.00 0.00 1.52
3358 3406 9.781834 CGATTTATAGCAAACAGACCATTTTAA 57.218 29.630 0.00 0.00 0.00 1.52
3366 3414 9.777297 AGCAAACAGACCATTTTAATAAATTGT 57.223 25.926 6.81 0.00 33.64 2.71
3367 3415 9.810231 GCAAACAGACCATTTTAATAAATTGTG 57.190 29.630 6.81 2.69 31.77 3.33
3371 3419 9.912634 ACAGACCATTTTAATAAATTGTGTGAG 57.087 29.630 14.58 6.92 40.32 3.51
3386 3434 9.773328 AAATTGTGTGAGATATGTTTACAATCG 57.227 29.630 0.00 0.00 36.57 3.34
3387 3435 6.344572 TGTGTGAGATATGTTTACAATCGC 57.655 37.500 0.00 0.00 0.00 4.58
3388 3436 5.872070 TGTGTGAGATATGTTTACAATCGCA 59.128 36.000 7.08 7.08 0.00 5.10
3389 3437 6.538381 TGTGTGAGATATGTTTACAATCGCAT 59.462 34.615 11.35 0.00 33.12 4.73
3390 3438 7.708752 TGTGTGAGATATGTTTACAATCGCATA 59.291 33.333 11.35 8.25 33.12 3.14
3391 3439 8.004344 GTGTGAGATATGTTTACAATCGCATAC 58.996 37.037 14.83 14.83 35.61 2.39
3392 3440 7.708752 TGTGAGATATGTTTACAATCGCATACA 59.291 33.333 11.35 0.00 33.12 2.29
3393 3441 8.217115 GTGAGATATGTTTACAATCGCATACAG 58.783 37.037 11.35 0.00 33.12 2.74
3394 3442 7.926018 TGAGATATGTTTACAATCGCATACAGT 59.074 33.333 7.08 0.00 0.00 3.55
3395 3443 8.662781 AGATATGTTTACAATCGCATACAGTT 57.337 30.769 0.00 0.00 0.00 3.16
3396 3444 9.758651 AGATATGTTTACAATCGCATACAGTTA 57.241 29.630 0.00 0.00 0.00 2.24
3397 3445 9.793245 GATATGTTTACAATCGCATACAGTTAC 57.207 33.333 0.00 0.00 0.00 2.50
3398 3446 7.603963 ATGTTTACAATCGCATACAGTTACA 57.396 32.000 0.00 0.00 0.00 2.41
3399 3447 6.823531 TGTTTACAATCGCATACAGTTACAC 58.176 36.000 0.00 0.00 0.00 2.90
3400 3448 6.128499 TGTTTACAATCGCATACAGTTACACC 60.128 38.462 0.00 0.00 0.00 4.16
3401 3449 2.927477 ACAATCGCATACAGTTACACCG 59.073 45.455 0.00 0.00 0.00 4.94
3402 3450 3.183754 CAATCGCATACAGTTACACCGA 58.816 45.455 0.00 0.00 0.00 4.69
3403 3451 3.513680 ATCGCATACAGTTACACCGAA 57.486 42.857 0.00 0.00 0.00 4.30
3404 3452 2.871133 TCGCATACAGTTACACCGAAG 58.129 47.619 0.00 0.00 0.00 3.79
3420 3468 3.236632 CGAAGGAGTCATGTGTGATGA 57.763 47.619 0.00 0.00 36.60 2.92
3421 3469 3.790091 CGAAGGAGTCATGTGTGATGAT 58.210 45.455 0.00 0.00 36.60 2.45
3422 3470 3.554731 CGAAGGAGTCATGTGTGATGATG 59.445 47.826 0.00 0.00 36.60 3.07
3423 3471 4.511527 GAAGGAGTCATGTGTGATGATGT 58.488 43.478 0.00 0.00 36.60 3.06
3424 3472 4.564782 AGGAGTCATGTGTGATGATGTT 57.435 40.909 0.00 0.00 36.60 2.71
3425 3473 4.511527 AGGAGTCATGTGTGATGATGTTC 58.488 43.478 0.00 0.00 36.60 3.18
3426 3474 4.019950 AGGAGTCATGTGTGATGATGTTCA 60.020 41.667 0.00 0.00 36.60 3.18
3427 3475 4.093998 GGAGTCATGTGTGATGATGTTCAC 59.906 45.833 0.00 0.00 45.05 3.18
3440 3488 9.229784 GTGATGATGTTCACATGATTTCAATAC 57.770 33.333 0.00 0.00 44.38 1.89
3441 3489 9.181061 TGATGATGTTCACATGATTTCAATACT 57.819 29.630 0.00 0.00 36.57 2.12
3443 3491 9.797556 ATGATGTTCACATGATTTCAATACTTG 57.202 29.630 0.00 0.00 36.57 3.16
3444 3492 8.795513 TGATGTTCACATGATTTCAATACTTGT 58.204 29.630 0.00 0.00 36.57 3.16
3457 3505 8.736751 TTTCAATACTTGTAAATTTTCCTCGC 57.263 30.769 0.00 0.00 0.00 5.03
3458 3506 7.681939 TCAATACTTGTAAATTTTCCTCGCT 57.318 32.000 0.00 0.00 0.00 4.93
3459 3507 8.106247 TCAATACTTGTAAATTTTCCTCGCTT 57.894 30.769 0.00 0.00 0.00 4.68
3460 3508 8.020819 TCAATACTTGTAAATTTTCCTCGCTTG 58.979 33.333 0.00 0.00 0.00 4.01
3461 3509 7.681939 ATACTTGTAAATTTTCCTCGCTTGA 57.318 32.000 0.00 0.00 0.00 3.02
3462 3510 6.385649 ACTTGTAAATTTTCCTCGCTTGAA 57.614 33.333 0.00 0.00 0.00 2.69
3463 3511 6.981722 ACTTGTAAATTTTCCTCGCTTGAAT 58.018 32.000 0.00 0.00 0.00 2.57
3464 3512 7.433680 ACTTGTAAATTTTCCTCGCTTGAATT 58.566 30.769 0.00 0.00 0.00 2.17
3465 3513 8.573035 ACTTGTAAATTTTCCTCGCTTGAATTA 58.427 29.630 0.00 0.00 0.00 1.40
3466 3514 9.573133 CTTGTAAATTTTCCTCGCTTGAATTAT 57.427 29.630 0.00 0.00 0.00 1.28
3467 3515 9.921637 TTGTAAATTTTCCTCGCTTGAATTATT 57.078 25.926 0.00 0.00 0.00 1.40
3468 3516 9.921637 TGTAAATTTTCCTCGCTTGAATTATTT 57.078 25.926 0.00 0.00 0.00 1.40
3474 3522 9.751542 TTTTCCTCGCTTGAATTATTTAAAACA 57.248 25.926 0.00 0.00 0.00 2.83
3475 3523 9.921637 TTTCCTCGCTTGAATTATTTAAAACAT 57.078 25.926 0.00 0.00 0.00 2.71
3476 3524 8.909708 TCCTCGCTTGAATTATTTAAAACATG 57.090 30.769 0.00 0.00 0.00 3.21
3477 3525 7.487829 TCCTCGCTTGAATTATTTAAAACATGC 59.512 33.333 0.00 0.00 0.00 4.06
3478 3526 7.275341 CCTCGCTTGAATTATTTAAAACATGCA 59.725 33.333 0.00 0.00 32.13 3.96
3479 3527 8.700722 TCGCTTGAATTATTTAAAACATGCAT 57.299 26.923 0.00 0.00 32.13 3.96
3480 3528 9.794685 TCGCTTGAATTATTTAAAACATGCATA 57.205 25.926 0.00 0.00 32.13 3.14
3520 3568 4.353383 GAACAGAGGTTCCTAGGTTGTT 57.647 45.455 9.08 10.60 46.18 2.83
3521 3569 5.479124 GAACAGAGGTTCCTAGGTTGTTA 57.521 43.478 9.08 0.00 46.18 2.41
3522 3570 6.051179 GAACAGAGGTTCCTAGGTTGTTAT 57.949 41.667 9.08 0.00 46.18 1.89
3523 3571 6.449830 AACAGAGGTTCCTAGGTTGTTATT 57.550 37.500 9.08 0.00 29.00 1.40
3524 3572 6.449830 ACAGAGGTTCCTAGGTTGTTATTT 57.550 37.500 9.08 0.00 0.00 1.40
3525 3573 7.563724 ACAGAGGTTCCTAGGTTGTTATTTA 57.436 36.000 9.08 0.00 0.00 1.40
3526 3574 7.392418 ACAGAGGTTCCTAGGTTGTTATTTAC 58.608 38.462 9.08 0.00 0.00 2.01
3527 3575 7.016858 ACAGAGGTTCCTAGGTTGTTATTTACA 59.983 37.037 9.08 0.00 34.12 2.41
3528 3576 8.047310 CAGAGGTTCCTAGGTTGTTATTTACAT 58.953 37.037 9.08 0.00 36.44 2.29
3529 3577 8.047310 AGAGGTTCCTAGGTTGTTATTTACATG 58.953 37.037 9.08 0.00 36.44 3.21
3530 3578 7.924541 AGGTTCCTAGGTTGTTATTTACATGA 58.075 34.615 9.08 0.00 36.44 3.07
3531 3579 8.387813 AGGTTCCTAGGTTGTTATTTACATGAA 58.612 33.333 9.08 0.00 36.44 2.57
3532 3580 9.016438 GGTTCCTAGGTTGTTATTTACATGAAA 57.984 33.333 9.08 0.00 36.44 2.69
3563 3611 8.918202 AAAACATACATAGAGACCTCACAAAA 57.082 30.769 0.00 0.00 0.00 2.44
3564 3612 8.918202 AAACATACATAGAGACCTCACAAAAA 57.082 30.769 0.00 0.00 0.00 1.94
3565 3613 8.553459 AACATACATAGAGACCTCACAAAAAG 57.447 34.615 0.00 0.00 0.00 2.27
3566 3614 7.907389 ACATACATAGAGACCTCACAAAAAGA 58.093 34.615 0.00 0.00 0.00 2.52
3567 3615 8.543774 ACATACATAGAGACCTCACAAAAAGAT 58.456 33.333 0.00 0.00 0.00 2.40
3568 3616 9.388506 CATACATAGAGACCTCACAAAAAGATT 57.611 33.333 0.00 0.00 0.00 2.40
3571 3619 9.965902 ACATAGAGACCTCACAAAAAGATTAAT 57.034 29.630 0.00 0.00 0.00 1.40
3574 3622 8.924511 AGAGACCTCACAAAAAGATTAATTGA 57.075 30.769 0.00 0.00 0.00 2.57
3575 3623 9.525826 AGAGACCTCACAAAAAGATTAATTGAT 57.474 29.630 0.00 0.00 0.00 2.57
3576 3624 9.780413 GAGACCTCACAAAAAGATTAATTGATC 57.220 33.333 2.02 2.02 0.00 2.92
3577 3625 9.300681 AGACCTCACAAAAAGATTAATTGATCA 57.699 29.630 12.29 0.00 0.00 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.244862 CAAAAAGGCATTAGCAAATCGGT 58.755 39.130 0.00 0.00 44.61 4.69
1 2 3.618150 CCAAAAAGGCATTAGCAAATCGG 59.382 43.478 0.00 0.00 44.61 4.18
2 3 4.244862 ACCAAAAAGGCATTAGCAAATCG 58.755 39.130 0.00 0.00 44.61 3.34
4 5 5.488262 AGACCAAAAAGGCATTAGCAAAT 57.512 34.783 0.00 0.00 44.61 2.32
5 6 4.953940 AGACCAAAAAGGCATTAGCAAA 57.046 36.364 0.00 0.00 44.61 3.68
6 7 5.563867 CGTTAGACCAAAAAGGCATTAGCAA 60.564 40.000 0.00 0.00 44.61 3.91
7 8 4.083003 CGTTAGACCAAAAAGGCATTAGCA 60.083 41.667 0.00 0.00 44.61 3.49
8 9 4.412207 CGTTAGACCAAAAAGGCATTAGC 58.588 43.478 0.00 0.00 43.14 3.09
9 10 4.156008 AGCGTTAGACCAAAAAGGCATTAG 59.844 41.667 0.00 0.00 43.14 1.73
10 11 4.076394 AGCGTTAGACCAAAAAGGCATTA 58.924 39.130 0.00 0.00 43.14 1.90
11 12 2.890945 AGCGTTAGACCAAAAAGGCATT 59.109 40.909 0.00 0.00 43.14 3.56
12 13 2.514803 AGCGTTAGACCAAAAAGGCAT 58.485 42.857 0.00 0.00 43.14 4.40
13 14 1.975660 AGCGTTAGACCAAAAAGGCA 58.024 45.000 0.00 0.00 43.14 4.75
14 15 3.501062 ACTTAGCGTTAGACCAAAAAGGC 59.499 43.478 0.00 0.00 43.14 4.35
15 16 4.514066 ACACTTAGCGTTAGACCAAAAAGG 59.486 41.667 0.00 0.00 45.67 3.11
16 17 5.668558 ACACTTAGCGTTAGACCAAAAAG 57.331 39.130 0.00 0.00 0.00 2.27
17 18 5.220892 CCAACACTTAGCGTTAGACCAAAAA 60.221 40.000 0.00 0.00 0.00 1.94
18 19 4.273969 CCAACACTTAGCGTTAGACCAAAA 59.726 41.667 0.00 0.00 0.00 2.44
19 20 3.810941 CCAACACTTAGCGTTAGACCAAA 59.189 43.478 0.00 0.00 0.00 3.28
20 21 3.395639 CCAACACTTAGCGTTAGACCAA 58.604 45.455 0.00 0.00 0.00 3.67
21 22 2.868839 GCCAACACTTAGCGTTAGACCA 60.869 50.000 0.00 0.00 0.00 4.02
22 23 1.730612 GCCAACACTTAGCGTTAGACC 59.269 52.381 0.00 0.00 0.00 3.85
23 24 2.666994 GAGCCAACACTTAGCGTTAGAC 59.333 50.000 0.00 0.00 0.00 2.59
24 25 2.297880 TGAGCCAACACTTAGCGTTAGA 59.702 45.455 0.00 0.00 0.00 2.10
25 26 2.683968 TGAGCCAACACTTAGCGTTAG 58.316 47.619 0.00 0.00 0.00 2.34
26 27 2.823924 TGAGCCAACACTTAGCGTTA 57.176 45.000 0.00 0.00 0.00 3.18
27 28 1.806542 CATGAGCCAACACTTAGCGTT 59.193 47.619 0.00 0.00 0.00 4.84
28 29 1.001974 TCATGAGCCAACACTTAGCGT 59.998 47.619 0.00 0.00 0.00 5.07
29 30 1.394917 GTCATGAGCCAACACTTAGCG 59.605 52.381 0.00 0.00 0.00 4.26
30 31 1.740025 GGTCATGAGCCAACACTTAGC 59.260 52.381 14.08 0.00 0.00 3.09
31 32 2.002586 CGGTCATGAGCCAACACTTAG 58.997 52.381 18.81 0.00 0.00 2.18
32 33 1.943968 GCGGTCATGAGCCAACACTTA 60.944 52.381 18.81 0.00 0.00 2.24
33 34 1.237285 GCGGTCATGAGCCAACACTT 61.237 55.000 18.81 0.00 0.00 3.16
34 35 1.672356 GCGGTCATGAGCCAACACT 60.672 57.895 18.81 0.00 0.00 3.55
35 36 1.308069 ATGCGGTCATGAGCCAACAC 61.308 55.000 18.81 4.73 0.00 3.32
36 37 0.608856 AATGCGGTCATGAGCCAACA 60.609 50.000 18.81 14.48 32.23 3.33
37 38 0.179156 CAATGCGGTCATGAGCCAAC 60.179 55.000 18.81 9.44 32.23 3.77
38 39 0.322366 TCAATGCGGTCATGAGCCAA 60.322 50.000 18.81 7.90 32.23 4.52
39 40 0.322366 TTCAATGCGGTCATGAGCCA 60.322 50.000 18.81 16.84 32.23 4.75
40 41 0.099436 GTTCAATGCGGTCATGAGCC 59.901 55.000 18.81 12.01 32.23 4.70
41 42 0.247814 CGTTCAATGCGGTCATGAGC 60.248 55.000 15.01 15.01 32.23 4.26
42 43 1.358877 TCGTTCAATGCGGTCATGAG 58.641 50.000 0.00 0.00 32.23 2.90
43 44 2.022764 ATCGTTCAATGCGGTCATGA 57.977 45.000 0.00 0.00 32.23 3.07
44 45 2.830772 AATCGTTCAATGCGGTCATG 57.169 45.000 0.00 0.00 32.23 3.07
45 46 3.009723 AGAAATCGTTCAATGCGGTCAT 58.990 40.909 0.00 0.00 36.09 3.06
46 47 2.415168 GAGAAATCGTTCAATGCGGTCA 59.585 45.455 0.00 0.00 36.09 4.02
47 48 2.673368 AGAGAAATCGTTCAATGCGGTC 59.327 45.455 0.00 0.00 36.09 4.79
48 49 2.699954 AGAGAAATCGTTCAATGCGGT 58.300 42.857 0.00 0.00 36.09 5.68
49 50 3.125146 TGAAGAGAAATCGTTCAATGCGG 59.875 43.478 0.00 0.00 36.09 5.69
50 51 4.326413 TGAAGAGAAATCGTTCAATGCG 57.674 40.909 0.48 0.00 36.09 4.73
51 52 6.991485 TTTTGAAGAGAAATCGTTCAATGC 57.009 33.333 12.03 0.00 39.34 3.56
52 53 8.511465 ACATTTTGAAGAGAAATCGTTCAATG 57.489 30.769 12.03 11.08 39.34 2.82
53 54 8.971321 CAACATTTTGAAGAGAAATCGTTCAAT 58.029 29.630 12.03 0.90 39.34 2.57
54 55 8.187480 TCAACATTTTGAAGAGAAATCGTTCAA 58.813 29.630 8.86 8.86 38.87 2.69
55 56 7.702386 TCAACATTTTGAAGAGAAATCGTTCA 58.298 30.769 0.00 0.00 38.87 3.18
56 57 8.733857 ATCAACATTTTGAAGAGAAATCGTTC 57.266 30.769 0.00 0.00 45.01 3.95
57 58 9.185192 GAATCAACATTTTGAAGAGAAATCGTT 57.815 29.630 0.00 0.00 45.01 3.85
58 59 7.535258 CGAATCAACATTTTGAAGAGAAATCGT 59.465 33.333 0.00 0.00 45.01 3.73
59 60 7.460637 GCGAATCAACATTTTGAAGAGAAATCG 60.461 37.037 0.00 2.84 45.01 3.34
60 61 7.326789 TGCGAATCAACATTTTGAAGAGAAATC 59.673 33.333 0.00 0.00 45.01 2.17
61 62 7.115378 GTGCGAATCAACATTTTGAAGAGAAAT 59.885 33.333 0.00 0.00 45.01 2.17
62 63 6.417635 GTGCGAATCAACATTTTGAAGAGAAA 59.582 34.615 0.00 0.00 45.01 2.52
63 64 5.914635 GTGCGAATCAACATTTTGAAGAGAA 59.085 36.000 0.00 0.00 45.01 2.87
64 65 5.008514 TGTGCGAATCAACATTTTGAAGAGA 59.991 36.000 0.00 0.00 45.01 3.10
65 66 5.116074 GTGTGCGAATCAACATTTTGAAGAG 59.884 40.000 0.00 0.00 45.01 2.85
66 67 4.975502 GTGTGCGAATCAACATTTTGAAGA 59.024 37.500 0.00 0.00 45.01 2.87
67 68 4.148696 GGTGTGCGAATCAACATTTTGAAG 59.851 41.667 0.00 0.00 45.01 3.02
68 69 4.047822 GGTGTGCGAATCAACATTTTGAA 58.952 39.130 0.00 0.00 45.01 2.69
69 70 3.317711 AGGTGTGCGAATCAACATTTTGA 59.682 39.130 0.00 0.00 45.93 2.69
70 71 3.641648 AGGTGTGCGAATCAACATTTTG 58.358 40.909 0.00 0.00 0.00 2.44
71 72 3.569701 AGAGGTGTGCGAATCAACATTTT 59.430 39.130 0.00 0.00 0.00 1.82
72 73 3.149196 AGAGGTGTGCGAATCAACATTT 58.851 40.909 0.00 0.00 0.00 2.32
73 74 2.783135 AGAGGTGTGCGAATCAACATT 58.217 42.857 0.00 0.00 0.00 2.71
74 75 2.479566 AGAGGTGTGCGAATCAACAT 57.520 45.000 0.00 0.00 0.00 2.71
75 76 2.143122 GAAGAGGTGTGCGAATCAACA 58.857 47.619 0.00 0.00 0.00 3.33
76 77 2.143122 TGAAGAGGTGTGCGAATCAAC 58.857 47.619 0.00 0.00 0.00 3.18
77 78 2.542020 TGAAGAGGTGTGCGAATCAA 57.458 45.000 0.00 0.00 0.00 2.57
78 79 2.768253 ATGAAGAGGTGTGCGAATCA 57.232 45.000 0.00 0.00 0.00 2.57
79 80 4.447054 CAGATATGAAGAGGTGTGCGAATC 59.553 45.833 0.00 0.00 0.00 2.52
80 81 4.375272 CAGATATGAAGAGGTGTGCGAAT 58.625 43.478 0.00 0.00 0.00 3.34
81 82 3.430790 CCAGATATGAAGAGGTGTGCGAA 60.431 47.826 0.00 0.00 0.00 4.70
82 83 2.101415 CCAGATATGAAGAGGTGTGCGA 59.899 50.000 0.00 0.00 0.00 5.10
83 84 2.477825 CCAGATATGAAGAGGTGTGCG 58.522 52.381 0.00 0.00 0.00 5.34
84 85 2.158842 AGCCAGATATGAAGAGGTGTGC 60.159 50.000 0.00 0.00 0.00 4.57
85 86 3.133542 TCAGCCAGATATGAAGAGGTGTG 59.866 47.826 0.00 0.00 0.00 3.82
86 87 3.378512 TCAGCCAGATATGAAGAGGTGT 58.621 45.455 0.00 0.00 0.00 4.16
87 88 4.412796 TTCAGCCAGATATGAAGAGGTG 57.587 45.455 0.00 0.00 31.93 4.00
88 89 5.045286 AGTTTTCAGCCAGATATGAAGAGGT 60.045 40.000 0.00 0.00 36.81 3.85
89 90 5.435291 AGTTTTCAGCCAGATATGAAGAGG 58.565 41.667 0.00 0.00 36.81 3.69
90 91 6.347696 AGAGTTTTCAGCCAGATATGAAGAG 58.652 40.000 0.00 0.00 36.81 2.85
91 92 6.305272 AGAGTTTTCAGCCAGATATGAAGA 57.695 37.500 0.00 0.00 36.81 2.87
92 93 6.373774 ACAAGAGTTTTCAGCCAGATATGAAG 59.626 38.462 0.00 0.00 36.81 3.02
93 94 6.240894 ACAAGAGTTTTCAGCCAGATATGAA 58.759 36.000 0.00 0.00 33.73 2.57
94 95 5.809001 ACAAGAGTTTTCAGCCAGATATGA 58.191 37.500 0.00 0.00 0.00 2.15
95 96 5.065731 GGACAAGAGTTTTCAGCCAGATATG 59.934 44.000 0.00 0.00 0.00 1.78
96 97 5.045286 AGGACAAGAGTTTTCAGCCAGATAT 60.045 40.000 0.00 0.00 0.00 1.63
97 98 4.287067 AGGACAAGAGTTTTCAGCCAGATA 59.713 41.667 0.00 0.00 0.00 1.98
98 99 3.073650 AGGACAAGAGTTTTCAGCCAGAT 59.926 43.478 0.00 0.00 0.00 2.90
99 100 2.439507 AGGACAAGAGTTTTCAGCCAGA 59.560 45.455 0.00 0.00 0.00 3.86
100 101 2.856222 AGGACAAGAGTTTTCAGCCAG 58.144 47.619 0.00 0.00 0.00 4.85
101 102 4.134563 GTTAGGACAAGAGTTTTCAGCCA 58.865 43.478 0.00 0.00 0.00 4.75
102 103 3.502595 GGTTAGGACAAGAGTTTTCAGCC 59.497 47.826 0.00 0.00 0.00 4.85
169 170 0.375803 AAGTGGACAACGCGTTCAAC 59.624 50.000 23.92 16.02 33.79 3.18
177 178 0.732571 ACAACAGCAAGTGGACAACG 59.267 50.000 0.00 0.00 0.00 4.10
184 185 1.202290 GGACCAACACAACAGCAAGTG 60.202 52.381 0.00 0.00 41.40 3.16
187 188 1.340502 TGAGGACCAACACAACAGCAA 60.341 47.619 0.00 0.00 0.00 3.91
213 214 2.662866 TCCTCCTAGTTACCATGACCG 58.337 52.381 0.00 0.00 0.00 4.79
231 232 6.183360 CGAGATAACTTGGACAAGGATTTTCC 60.183 42.308 15.72 0.00 42.53 3.13
246 247 0.737219 CGTCCGACCCGAGATAACTT 59.263 55.000 0.00 0.00 0.00 2.66
259 260 1.690283 GACATCGTCGTCTCGTCCGA 61.690 60.000 0.00 8.37 36.35 4.55
288 289 4.269603 CACAACGCCTTCATGAGAGATAAG 59.730 45.833 0.00 0.00 0.00 1.73
294 295 0.955428 GCCACAACGCCTTCATGAGA 60.955 55.000 0.00 0.00 0.00 3.27
311 312 1.002251 CTAGATCGACTTCGTCCTGCC 60.002 57.143 0.00 0.00 40.80 4.85
314 315 6.991531 ACTTATAACTAGATCGACTTCGTCCT 59.008 38.462 0.00 0.41 40.80 3.85
318 319 8.838452 AAACACTTATAACTAGATCGACTTCG 57.162 34.615 0.00 0.00 41.45 3.79
353 354 6.247165 GCAATTACGATCGAATCATTACATGC 59.753 38.462 24.34 15.68 0.00 4.06
363 364 5.354234 AGAACAAAGGCAATTACGATCGAAT 59.646 36.000 24.34 13.86 0.00 3.34
368 369 3.505680 TGCAGAACAAAGGCAATTACGAT 59.494 39.130 0.00 0.00 34.05 3.73
371 372 4.022849 AGAGTGCAGAACAAAGGCAATTAC 60.023 41.667 0.00 0.00 39.57 1.89
375 376 2.057137 AGAGTGCAGAACAAAGGCAA 57.943 45.000 0.00 0.00 39.57 4.52
388 389 9.911138 GGAGGTAGTAATTATTAAGTAGAGTGC 57.089 37.037 0.00 0.00 0.00 4.40
398 399 9.043548 GCCTTAGGATGGAGGTAGTAATTATTA 57.956 37.037 0.69 0.00 35.42 0.98
399 400 7.310485 CGCCTTAGGATGGAGGTAGTAATTATT 60.310 40.741 0.69 0.00 35.42 1.40
400 401 6.154706 CGCCTTAGGATGGAGGTAGTAATTAT 59.845 42.308 0.69 0.00 35.42 1.28
401 402 5.479375 CGCCTTAGGATGGAGGTAGTAATTA 59.521 44.000 0.69 0.00 35.42 1.40
402 403 4.283722 CGCCTTAGGATGGAGGTAGTAATT 59.716 45.833 0.69 0.00 35.42 1.40
403 404 3.833070 CGCCTTAGGATGGAGGTAGTAAT 59.167 47.826 0.69 0.00 35.42 1.89
404 405 3.228453 CGCCTTAGGATGGAGGTAGTAA 58.772 50.000 0.69 0.00 35.42 2.24
405 406 2.176364 ACGCCTTAGGATGGAGGTAGTA 59.824 50.000 0.69 0.00 35.42 1.82
406 407 1.063114 ACGCCTTAGGATGGAGGTAGT 60.063 52.381 0.69 0.00 35.42 2.73
407 408 1.705873 ACGCCTTAGGATGGAGGTAG 58.294 55.000 0.69 0.00 35.42 3.18
408 409 2.091720 TGTACGCCTTAGGATGGAGGTA 60.092 50.000 0.69 0.00 35.42 3.08
409 410 1.342674 TGTACGCCTTAGGATGGAGGT 60.343 52.381 0.69 0.00 35.42 3.85
410 411 1.410004 TGTACGCCTTAGGATGGAGG 58.590 55.000 0.69 0.00 36.09 4.30
411 412 3.753294 AATGTACGCCTTAGGATGGAG 57.247 47.619 0.69 0.00 0.00 3.86
412 413 4.652421 ACTTAATGTACGCCTTAGGATGGA 59.348 41.667 0.69 0.00 0.00 3.41
413 414 4.957296 ACTTAATGTACGCCTTAGGATGG 58.043 43.478 0.69 0.00 0.00 3.51
414 415 5.597806 TGACTTAATGTACGCCTTAGGATG 58.402 41.667 0.69 0.00 0.00 3.51
415 416 5.864418 TGACTTAATGTACGCCTTAGGAT 57.136 39.130 0.69 0.00 0.00 3.24
416 417 5.664294 TTGACTTAATGTACGCCTTAGGA 57.336 39.130 0.69 0.00 0.00 2.94
417 418 6.287107 CATTGACTTAATGTACGCCTTAGG 57.713 41.667 0.00 0.00 41.02 2.69
453 454 9.260002 CACACACACACACACACATATATATAT 57.740 33.333 0.00 0.00 0.00 0.86
454 455 8.254508 ACACACACACACACACACATATATATA 58.745 33.333 0.00 0.00 0.00 0.86
455 456 7.064490 CACACACACACACACACACATATATAT 59.936 37.037 0.00 0.00 0.00 0.86
456 457 6.367422 CACACACACACACACACACATATATA 59.633 38.462 0.00 0.00 0.00 0.86
457 458 5.179182 CACACACACACACACACACATATAT 59.821 40.000 0.00 0.00 0.00 0.86
458 459 4.509600 CACACACACACACACACACATATA 59.490 41.667 0.00 0.00 0.00 0.86
459 460 3.312146 CACACACACACACACACACATAT 59.688 43.478 0.00 0.00 0.00 1.78
460 461 2.675348 CACACACACACACACACACATA 59.325 45.455 0.00 0.00 0.00 2.29
461 462 1.468127 CACACACACACACACACACAT 59.532 47.619 0.00 0.00 0.00 3.21
462 463 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
463 464 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
464 465 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
465 466 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
466 467 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
467 468 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
468 469 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
469 470 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
470 471 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
471 472 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
472 473 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
473 474 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
474 475 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
475 476 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
476 477 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
477 478 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
478 479 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
479 480 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
480 481 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
481 482 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
482 483 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
483 484 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
484 485 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
485 486 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
486 487 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
487 488 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
488 489 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
489 490 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
490 491 2.457366 TACACACACACACACACACA 57.543 45.000 0.00 0.00 0.00 3.72
491 492 2.675844 ACATACACACACACACACACAC 59.324 45.455 0.00 0.00 0.00 3.82
492 493 2.979240 ACATACACACACACACACACA 58.021 42.857 0.00 0.00 0.00 3.72
493 494 6.961359 ATATACATACACACACACACACAC 57.039 37.500 0.00 0.00 0.00 3.82
514 515 9.930693 TTTTGTGTGTGTGTGTGTCTATATATA 57.069 29.630 0.00 0.00 0.00 0.86
515 516 8.840833 TTTTGTGTGTGTGTGTGTCTATATAT 57.159 30.769 0.00 0.00 0.00 0.86
516 517 8.664211 TTTTTGTGTGTGTGTGTGTCTATATA 57.336 30.769 0.00 0.00 0.00 0.86
517 518 7.561021 TTTTTGTGTGTGTGTGTGTCTATAT 57.439 32.000 0.00 0.00 0.00 0.86
518 519 6.986904 TTTTTGTGTGTGTGTGTGTCTATA 57.013 33.333 0.00 0.00 0.00 1.31
519 520 5.888691 TTTTTGTGTGTGTGTGTGTCTAT 57.111 34.783 0.00 0.00 0.00 1.98
520 521 5.888691 ATTTTTGTGTGTGTGTGTGTCTA 57.111 34.783 0.00 0.00 0.00 2.59
521 522 4.782019 ATTTTTGTGTGTGTGTGTGTCT 57.218 36.364 0.00 0.00 0.00 3.41
522 523 6.261859 TCATATTTTTGTGTGTGTGTGTGTC 58.738 36.000 0.00 0.00 0.00 3.67
523 524 6.201226 TCATATTTTTGTGTGTGTGTGTGT 57.799 33.333 0.00 0.00 0.00 3.72
524 525 6.291743 GCTTCATATTTTTGTGTGTGTGTGTG 60.292 38.462 0.00 0.00 0.00 3.82
525 526 5.748152 GCTTCATATTTTTGTGTGTGTGTGT 59.252 36.000 0.00 0.00 0.00 3.72
526 527 5.978919 AGCTTCATATTTTTGTGTGTGTGTG 59.021 36.000 0.00 0.00 0.00 3.82
527 528 6.147864 AGCTTCATATTTTTGTGTGTGTGT 57.852 33.333 0.00 0.00 0.00 3.72
528 529 8.479280 GTTTAGCTTCATATTTTTGTGTGTGTG 58.521 33.333 0.00 0.00 0.00 3.82
529 530 8.194104 TGTTTAGCTTCATATTTTTGTGTGTGT 58.806 29.630 0.00 0.00 0.00 3.72
530 531 8.572828 TGTTTAGCTTCATATTTTTGTGTGTG 57.427 30.769 0.00 0.00 0.00 3.82
531 532 9.762933 ATTGTTTAGCTTCATATTTTTGTGTGT 57.237 25.926 0.00 0.00 0.00 3.72
678 679 9.586732 CCCCAAAATAGATGGAGTATAAATTCA 57.413 33.333 0.00 0.00 40.56 2.57
679 680 8.523658 GCCCCAAAATAGATGGAGTATAAATTC 58.476 37.037 0.00 0.00 40.56 2.17
680 681 7.176690 CGCCCCAAAATAGATGGAGTATAAATT 59.823 37.037 0.00 0.00 40.56 1.82
681 682 6.659242 CGCCCCAAAATAGATGGAGTATAAAT 59.341 38.462 0.00 0.00 40.56 1.40
701 702 1.134228 TTTATTACTCCCTCCGCCCC 58.866 55.000 0.00 0.00 0.00 5.80
710 711 6.908825 TGCACACAGTCATTTTTATTACTCC 58.091 36.000 0.00 0.00 0.00 3.85
749 750 6.459670 TTTTCGAAAAGAAGGTTAAAGCCT 57.540 33.333 19.08 0.00 40.40 4.58
775 776 7.718753 TCCACATTTCACCATGCTTTTAATTTT 59.281 29.630 0.00 0.00 0.00 1.82
776 777 7.222872 TCCACATTTCACCATGCTTTTAATTT 58.777 30.769 0.00 0.00 0.00 1.82
777 778 6.767456 TCCACATTTCACCATGCTTTTAATT 58.233 32.000 0.00 0.00 0.00 1.40
778 779 6.357579 TCCACATTTCACCATGCTTTTAAT 57.642 33.333 0.00 0.00 0.00 1.40
779 780 5.798125 TCCACATTTCACCATGCTTTTAA 57.202 34.783 0.00 0.00 0.00 1.52
873 878 7.778083 TCAATTTATAGGAACTGAGACGCTTA 58.222 34.615 0.00 0.00 41.52 3.09
874 879 6.640518 TCAATTTATAGGAACTGAGACGCTT 58.359 36.000 0.00 0.00 41.52 4.68
875 880 6.222038 TCAATTTATAGGAACTGAGACGCT 57.778 37.500 0.00 0.00 41.52 5.07
878 883 7.201617 CCGGTTTCAATTTATAGGAACTGAGAC 60.202 40.741 0.00 0.00 41.52 3.36
887 892 3.317993 CAGCCCCGGTTTCAATTTATAGG 59.682 47.826 0.00 0.00 0.00 2.57
896 901 3.551496 CTGAGCAGCCCCGGTTTCA 62.551 63.158 0.00 0.00 0.00 2.69
911 916 0.038166 GGACTGGTGCCAATTCCTGA 59.962 55.000 9.99 0.00 0.00 3.86
913 918 0.251341 GTGGACTGGTGCCAATTCCT 60.251 55.000 15.60 0.00 37.12 3.36
915 920 1.549203 ATGTGGACTGGTGCCAATTC 58.451 50.000 0.00 0.00 37.12 2.17
1170 1178 1.376683 GTCACCCATGCCGCTGTAA 60.377 57.895 0.00 0.00 0.00 2.41
1174 1182 4.722700 GTGGTCACCCATGCCGCT 62.723 66.667 0.00 0.00 44.35 5.52
1614 1622 2.828520 GAGGTCACAGATCCTGTTCTCA 59.171 50.000 12.66 0.00 42.59 3.27
1716 1724 1.813753 ATGGCACGTGTGTATCGCC 60.814 57.895 18.38 10.72 43.28 5.54
1938 1946 2.432628 GTGAACTCCGGGCAGACG 60.433 66.667 0.00 0.00 0.00 4.18
2038 2046 0.321653 GGCTTCTTCACCCACATCGT 60.322 55.000 0.00 0.00 0.00 3.73
2261 2269 0.871722 CACCATTTTCTCGAACGCCA 59.128 50.000 0.00 0.00 0.00 5.69
2289 2297 1.340248 GTCACAACCTCGAACCTCTCA 59.660 52.381 0.00 0.00 0.00 3.27
2362 2370 4.070552 GGCCGTCTTCTCACCGCT 62.071 66.667 0.00 0.00 0.00 5.52
2403 2417 1.289380 GACCGCGTTCACCTCTTCT 59.711 57.895 4.92 0.00 0.00 2.85
2406 2420 2.338984 GTGACCGCGTTCACCTCT 59.661 61.111 24.47 0.00 40.15 3.69
2588 2606 3.665745 TCACCAAGTTCGTAGGTTACC 57.334 47.619 0.00 0.00 32.15 2.85
2619 2637 5.621197 TTATTGTGGTGAACCTTGAATCG 57.379 39.130 0.37 0.00 36.82 3.34
2621 2639 7.363793 GCCTAATTATTGTGGTGAACCTTGAAT 60.364 37.037 0.37 0.00 36.82 2.57
2629 2647 3.283751 CCCGCCTAATTATTGTGGTGAA 58.716 45.455 11.76 0.00 32.31 3.18
2635 2653 1.687563 GTGGCCCGCCTAATTATTGT 58.312 50.000 7.35 0.00 36.94 2.71
2655 2673 5.068636 AGTACAATCCTCATGCATGATTCC 58.931 41.667 28.81 10.88 36.02 3.01
2722 2749 9.263538 ACAATAGTTTCAAATACAGACGTAACA 57.736 29.630 0.00 0.00 0.00 2.41
2767 2796 9.903682 CATCTCAATTATTATGCAACCTTTAGG 57.096 33.333 0.00 0.00 42.17 2.69
2855 2884 4.209307 TGAAGCGGGAACACATAATACA 57.791 40.909 0.00 0.00 0.00 2.29
2856 2885 5.065988 ACAATGAAGCGGGAACACATAATAC 59.934 40.000 0.00 0.00 0.00 1.89
2860 2890 3.066291 ACAATGAAGCGGGAACACATA 57.934 42.857 0.00 0.00 0.00 2.29
2870 2900 7.801547 AGAATACAATGAAAACAATGAAGCG 57.198 32.000 0.00 0.00 0.00 4.68
2898 2928 8.204836 GGGATGTAGTAGAATCACAAGTTACAT 58.795 37.037 0.00 0.00 34.30 2.29
2899 2929 7.399191 AGGGATGTAGTAGAATCACAAGTTACA 59.601 37.037 0.00 0.00 0.00 2.41
2900 2930 7.783042 AGGGATGTAGTAGAATCACAAGTTAC 58.217 38.462 0.00 0.00 0.00 2.50
2901 2931 7.973048 AGGGATGTAGTAGAATCACAAGTTA 57.027 36.000 0.00 0.00 0.00 2.24
2902 2932 6.875972 AGGGATGTAGTAGAATCACAAGTT 57.124 37.500 0.00 0.00 0.00 2.66
2903 2933 6.875972 AAGGGATGTAGTAGAATCACAAGT 57.124 37.500 0.00 0.00 0.00 3.16
2904 2934 8.478877 ACTTAAGGGATGTAGTAGAATCACAAG 58.521 37.037 7.53 0.00 0.00 3.16
2905 2935 8.375493 ACTTAAGGGATGTAGTAGAATCACAA 57.625 34.615 7.53 0.00 0.00 3.33
2906 2936 7.973048 ACTTAAGGGATGTAGTAGAATCACA 57.027 36.000 7.53 0.00 0.00 3.58
2914 2944 9.976511 CGATTCAATAACTTAAGGGATGTAGTA 57.023 33.333 7.53 0.00 0.00 1.82
2923 2953 8.504005 AGAAACACACGATTCAATAACTTAAGG 58.496 33.333 7.53 0.00 0.00 2.69
2928 2958 5.238432 TGCAGAAACACACGATTCAATAACT 59.762 36.000 0.00 0.00 0.00 2.24
2929 2959 5.448438 TGCAGAAACACACGATTCAATAAC 58.552 37.500 0.00 0.00 0.00 1.89
2936 2966 3.773860 TGTTTGCAGAAACACACGATT 57.226 38.095 0.00 0.00 45.26 3.34
2980 3011 7.716998 TGCCAATACATTGTTTTGGTGTTTATT 59.283 29.630 28.43 5.02 43.27 1.40
2982 3013 6.582636 TGCCAATACATTGTTTTGGTGTTTA 58.417 32.000 28.43 14.52 43.27 2.01
2984 3015 5.028549 TGCCAATACATTGTTTTGGTGTT 57.971 34.783 28.43 0.00 43.27 3.32
2985 3016 4.679373 TGCCAATACATTGTTTTGGTGT 57.321 36.364 28.43 0.27 43.27 4.16
2986 3017 5.526846 AGTTTGCCAATACATTGTTTTGGTG 59.473 36.000 28.43 13.25 43.27 4.17
2987 3018 5.679601 AGTTTGCCAATACATTGTTTTGGT 58.320 33.333 28.43 13.84 43.27 3.67
2988 3019 5.990996 AGAGTTTGCCAATACATTGTTTTGG 59.009 36.000 25.82 25.82 43.86 3.28
2989 3020 7.481275 AAGAGTTTGCCAATACATTGTTTTG 57.519 32.000 11.63 11.63 36.06 2.44
2990 3021 9.606631 TTTAAGAGTTTGCCAATACATTGTTTT 57.393 25.926 0.00 0.00 36.06 2.43
2996 3027 7.818930 CCAATGTTTAAGAGTTTGCCAATACAT 59.181 33.333 0.00 0.00 0.00 2.29
3023 3054 6.994257 GCACCGATCTGCAGTAATGGTACA 62.994 50.000 14.67 0.00 39.17 2.90
3030 3061 3.819564 AATAGCACCGATCTGCAGTAA 57.180 42.857 14.67 0.00 39.86 2.24
3052 3083 4.581493 CACATAATTCGATGATATGCGCC 58.419 43.478 4.18 0.00 31.66 6.53
3055 3086 5.251081 GTCGCACATAATTCGATGATATGC 58.749 41.667 10.72 4.43 34.61 3.14
3062 3108 3.444916 ACTTCGTCGCACATAATTCGAT 58.555 40.909 0.00 0.00 34.61 3.59
3074 3120 2.055838 TGTGTGTGATAACTTCGTCGC 58.944 47.619 0.00 0.00 0.00 5.19
3094 3140 9.995003 TTGAGGCACACAATTTTATTTTCTAAT 57.005 25.926 0.00 0.00 33.24 1.73
3098 3144 8.063630 CACTTTGAGGCACACAATTTTATTTTC 58.936 33.333 0.00 0.00 38.93 2.29
3103 3150 5.843673 TCACTTTGAGGCACACAATTTTA 57.156 34.783 0.00 0.00 38.93 1.52
3104 3151 4.734398 TCACTTTGAGGCACACAATTTT 57.266 36.364 0.00 0.00 38.93 1.82
3128 3175 1.447945 TGTGTTGGCCATCACATACG 58.552 50.000 35.30 0.00 39.23 3.06
3140 3188 2.239341 AATCACGCGCGATGTGTTGG 62.239 55.000 39.36 14.12 39.94 3.77
3143 3191 2.739704 CCAATCACGCGCGATGTGT 61.740 57.895 39.36 19.08 43.63 3.72
3150 3198 3.508840 CCTTCCCCAATCACGCGC 61.509 66.667 5.73 0.00 0.00 6.86
3151 3199 0.958382 TTTCCTTCCCCAATCACGCG 60.958 55.000 3.53 3.53 0.00 6.01
3154 3202 3.055891 CCATGTTTTCCTTCCCCAATCAC 60.056 47.826 0.00 0.00 0.00 3.06
3173 3221 3.979789 TGCACGAAATCGCACCAT 58.020 50.000 2.15 0.00 44.43 3.55
3179 3227 1.464608 AGAACCATGTGCACGAAATCG 59.535 47.619 13.13 0.48 46.33 3.34
3184 3232 1.616374 TCAGTAGAACCATGTGCACGA 59.384 47.619 13.13 1.58 0.00 4.35
3185 3233 2.078849 TCAGTAGAACCATGTGCACG 57.921 50.000 13.13 0.00 0.00 5.34
3186 3234 6.494893 TTATTTCAGTAGAACCATGTGCAC 57.505 37.500 10.75 10.75 32.39 4.57
3201 3249 7.065443 TCAGTTCATCTCACATGCTTATTTCAG 59.935 37.037 0.00 0.00 0.00 3.02
3202 3250 6.880529 TCAGTTCATCTCACATGCTTATTTCA 59.119 34.615 0.00 0.00 0.00 2.69
3203 3251 7.312657 TCAGTTCATCTCACATGCTTATTTC 57.687 36.000 0.00 0.00 0.00 2.17
3204 3252 7.692460 TTCAGTTCATCTCACATGCTTATTT 57.308 32.000 0.00 0.00 0.00 1.40
3205 3253 7.876936 ATTCAGTTCATCTCACATGCTTATT 57.123 32.000 0.00 0.00 0.00 1.40
3206 3254 7.876936 AATTCAGTTCATCTCACATGCTTAT 57.123 32.000 0.00 0.00 0.00 1.73
3207 3255 8.969260 ATAATTCAGTTCATCTCACATGCTTA 57.031 30.769 0.00 0.00 0.00 3.09
3208 3256 7.254692 CGATAATTCAGTTCATCTCACATGCTT 60.255 37.037 0.00 0.00 0.00 3.91
3209 3257 6.202379 CGATAATTCAGTTCATCTCACATGCT 59.798 38.462 0.00 0.00 0.00 3.79
3210 3258 6.361114 CGATAATTCAGTTCATCTCACATGC 58.639 40.000 0.00 0.00 0.00 4.06
3211 3259 6.018507 TGCGATAATTCAGTTCATCTCACATG 60.019 38.462 0.00 0.00 0.00 3.21
3212 3260 6.018425 GTGCGATAATTCAGTTCATCTCACAT 60.018 38.462 0.00 0.00 34.70 3.21
3213 3261 5.291858 GTGCGATAATTCAGTTCATCTCACA 59.708 40.000 0.00 0.00 34.70 3.58
3214 3262 5.291858 TGTGCGATAATTCAGTTCATCTCAC 59.708 40.000 0.00 0.00 34.99 3.51
3215 3263 5.291858 GTGTGCGATAATTCAGTTCATCTCA 59.708 40.000 0.00 0.00 0.00 3.27
3216 3264 5.555256 CGTGTGCGATAATTCAGTTCATCTC 60.555 44.000 0.00 0.00 41.33 2.75
3217 3265 4.268644 CGTGTGCGATAATTCAGTTCATCT 59.731 41.667 0.00 0.00 41.33 2.90
3218 3266 4.032900 ACGTGTGCGATAATTCAGTTCATC 59.967 41.667 0.00 0.00 42.00 2.92
3219 3267 3.932710 ACGTGTGCGATAATTCAGTTCAT 59.067 39.130 0.00 0.00 42.00 2.57
3220 3268 3.322369 ACGTGTGCGATAATTCAGTTCA 58.678 40.909 0.00 0.00 42.00 3.18
3221 3269 3.991605 ACGTGTGCGATAATTCAGTTC 57.008 42.857 0.00 0.00 42.00 3.01
3222 3270 4.742438 AAACGTGTGCGATAATTCAGTT 57.258 36.364 0.00 0.00 42.00 3.16
3223 3271 4.742438 AAAACGTGTGCGATAATTCAGT 57.258 36.364 0.00 0.00 42.00 3.41
3242 3290 3.252215 CCAGACACACGGCATTAGAAAAA 59.748 43.478 0.00 0.00 0.00 1.94
3243 3291 2.811431 CCAGACACACGGCATTAGAAAA 59.189 45.455 0.00 0.00 0.00 2.29
3244 3292 2.224426 ACCAGACACACGGCATTAGAAA 60.224 45.455 0.00 0.00 0.00 2.52
3245 3293 1.346395 ACCAGACACACGGCATTAGAA 59.654 47.619 0.00 0.00 0.00 2.10
3246 3294 0.973632 ACCAGACACACGGCATTAGA 59.026 50.000 0.00 0.00 0.00 2.10
3247 3295 1.464608 CAACCAGACACACGGCATTAG 59.535 52.381 0.00 0.00 0.00 1.73
3248 3296 1.202710 ACAACCAGACACACGGCATTA 60.203 47.619 0.00 0.00 0.00 1.90
3249 3297 0.465460 ACAACCAGACACACGGCATT 60.465 50.000 0.00 0.00 0.00 3.56
3250 3298 0.394938 TACAACCAGACACACGGCAT 59.605 50.000 0.00 0.00 0.00 4.40
3251 3299 0.531090 GTACAACCAGACACACGGCA 60.531 55.000 0.00 0.00 0.00 5.69
3252 3300 0.249741 AGTACAACCAGACACACGGC 60.250 55.000 0.00 0.00 0.00 5.68
3253 3301 1.067974 TCAGTACAACCAGACACACGG 59.932 52.381 0.00 0.00 0.00 4.94
3254 3302 2.502213 TCAGTACAACCAGACACACG 57.498 50.000 0.00 0.00 0.00 4.49
3255 3303 5.554822 TTTTTCAGTACAACCAGACACAC 57.445 39.130 0.00 0.00 0.00 3.82
3274 3322 3.199677 CGCATCATGATGGGCAATTTTT 58.800 40.909 32.06 0.00 43.22 1.94
3275 3323 2.828877 CGCATCATGATGGGCAATTTT 58.171 42.857 32.06 0.00 43.22 1.82
3276 3324 2.519377 CGCATCATGATGGGCAATTT 57.481 45.000 32.06 0.00 43.22 1.82
3283 3331 0.803117 GATGGCTCGCATCATGATGG 59.197 55.000 31.62 22.57 39.16 3.51
3284 3332 0.442699 CGATGGCTCGCATCATGATG 59.557 55.000 28.04 28.04 38.20 3.07
3285 3333 0.319405 TCGATGGCTCGCATCATGAT 59.681 50.000 1.18 1.18 44.65 2.45
3286 3334 0.104671 TTCGATGGCTCGCATCATGA 59.895 50.000 0.00 0.00 44.65 3.07
3287 3335 0.234106 GTTCGATGGCTCGCATCATG 59.766 55.000 0.00 0.00 44.65 3.07
3288 3336 0.179076 TGTTCGATGGCTCGCATCAT 60.179 50.000 0.00 0.00 44.65 2.45
3289 3337 1.083806 GTGTTCGATGGCTCGCATCA 61.084 55.000 0.00 0.09 44.65 3.07
3290 3338 1.083806 TGTGTTCGATGGCTCGCATC 61.084 55.000 0.00 0.00 44.65 3.91
3291 3339 0.462581 ATGTGTTCGATGGCTCGCAT 60.463 50.000 0.00 0.00 44.65 4.73
3292 3340 0.174617 TATGTGTTCGATGGCTCGCA 59.825 50.000 0.00 0.00 44.65 5.10
3293 3341 1.004927 GTTATGTGTTCGATGGCTCGC 60.005 52.381 0.00 0.00 44.65 5.03
3294 3342 2.540515 AGTTATGTGTTCGATGGCTCG 58.459 47.619 0.00 0.77 46.41 5.03
3295 3343 4.946784 AAAGTTATGTGTTCGATGGCTC 57.053 40.909 0.00 0.00 0.00 4.70
3296 3344 6.170506 TCTAAAAGTTATGTGTTCGATGGCT 58.829 36.000 0.00 0.00 0.00 4.75
3297 3345 6.417191 TCTAAAAGTTATGTGTTCGATGGC 57.583 37.500 0.00 0.00 0.00 4.40
3298 3346 8.425577 AGATCTAAAAGTTATGTGTTCGATGG 57.574 34.615 0.00 0.00 0.00 3.51
3301 3349 9.447040 CGATAGATCTAAAAGTTATGTGTTCGA 57.553 33.333 6.52 0.00 39.76 3.71
3302 3350 9.234384 ACGATAGATCTAAAAGTTATGTGTTCG 57.766 33.333 6.52 8.96 41.38 3.95
3305 3353 9.737427 CTCACGATAGATCTAAAAGTTATGTGT 57.263 33.333 6.52 0.00 41.38 3.72
3306 3354 8.695284 GCTCACGATAGATCTAAAAGTTATGTG 58.305 37.037 6.52 7.02 41.38 3.21
3307 3355 7.591795 CGCTCACGATAGATCTAAAAGTTATGT 59.408 37.037 6.52 0.00 43.93 2.29
3308 3356 7.803659 TCGCTCACGATAGATCTAAAAGTTATG 59.196 37.037 6.52 0.00 45.12 1.90
3309 3357 7.872881 TCGCTCACGATAGATCTAAAAGTTAT 58.127 34.615 6.52 0.00 45.12 1.89
3310 3358 7.255491 TCGCTCACGATAGATCTAAAAGTTA 57.745 36.000 6.52 0.00 45.12 2.24
3311 3359 6.132791 TCGCTCACGATAGATCTAAAAGTT 57.867 37.500 6.52 0.00 45.12 2.66
3312 3360 5.752892 TCGCTCACGATAGATCTAAAAGT 57.247 39.130 6.52 4.55 45.12 2.66
3326 3374 4.267690 TCTGTTTGCTATAAATCGCTCACG 59.732 41.667 0.00 0.00 42.01 4.35
3327 3375 5.493735 GTCTGTTTGCTATAAATCGCTCAC 58.506 41.667 0.00 0.00 0.00 3.51
3328 3376 4.570772 GGTCTGTTTGCTATAAATCGCTCA 59.429 41.667 0.00 0.00 0.00 4.26
3329 3377 4.570772 TGGTCTGTTTGCTATAAATCGCTC 59.429 41.667 0.00 0.00 0.00 5.03
3330 3378 4.513442 TGGTCTGTTTGCTATAAATCGCT 58.487 39.130 0.00 0.00 0.00 4.93
3331 3379 4.875544 TGGTCTGTTTGCTATAAATCGC 57.124 40.909 0.00 0.00 0.00 4.58
3332 3380 9.781834 TTAAAATGGTCTGTTTGCTATAAATCG 57.218 29.630 0.00 0.00 0.00 3.34
3340 3388 9.777297 ACAATTTATTAAAATGGTCTGTTTGCT 57.223 25.926 8.64 0.00 34.70 3.91
3341 3389 9.810231 CACAATTTATTAAAATGGTCTGTTTGC 57.190 29.630 8.64 0.00 37.17 3.68
3345 3393 9.912634 CTCACACAATTTATTAAAATGGTCTGT 57.087 29.630 8.64 2.48 37.17 3.41
3360 3408 9.773328 CGATTGTAAACATATCTCACACAATTT 57.227 29.630 0.00 0.00 35.79 1.82
3361 3409 7.910162 GCGATTGTAAACATATCTCACACAATT 59.090 33.333 0.00 0.00 35.79 2.32
3362 3410 7.065683 TGCGATTGTAAACATATCTCACACAAT 59.934 33.333 0.00 0.00 37.72 2.71
3363 3411 6.370166 TGCGATTGTAAACATATCTCACACAA 59.630 34.615 0.00 0.00 0.00 3.33
3364 3412 5.872070 TGCGATTGTAAACATATCTCACACA 59.128 36.000 0.00 0.00 0.00 3.72
3365 3413 6.344572 TGCGATTGTAAACATATCTCACAC 57.655 37.500 0.00 0.00 0.00 3.82
3366 3414 7.708752 TGTATGCGATTGTAAACATATCTCACA 59.291 33.333 0.00 0.00 0.00 3.58
3367 3415 8.072238 TGTATGCGATTGTAAACATATCTCAC 57.928 34.615 0.00 0.00 0.00 3.51
3368 3416 7.926018 ACTGTATGCGATTGTAAACATATCTCA 59.074 33.333 0.00 0.00 0.00 3.27
3369 3417 8.299262 ACTGTATGCGATTGTAAACATATCTC 57.701 34.615 0.00 0.00 0.00 2.75
3370 3418 8.662781 AACTGTATGCGATTGTAAACATATCT 57.337 30.769 0.00 0.00 0.00 1.98
3371 3419 9.793245 GTAACTGTATGCGATTGTAAACATATC 57.207 33.333 0.00 0.00 0.00 1.63
3372 3420 9.320352 TGTAACTGTATGCGATTGTAAACATAT 57.680 29.630 0.00 0.00 0.00 1.78
3373 3421 8.597227 GTGTAACTGTATGCGATTGTAAACATA 58.403 33.333 0.00 0.00 0.00 2.29
3374 3422 7.413657 GGTGTAACTGTATGCGATTGTAAACAT 60.414 37.037 0.00 0.00 36.74 2.71
3375 3423 6.128499 GGTGTAACTGTATGCGATTGTAAACA 60.128 38.462 0.00 0.00 36.74 2.83
3376 3424 6.245724 GGTGTAACTGTATGCGATTGTAAAC 58.754 40.000 0.00 0.00 36.74 2.01
3377 3425 5.062433 CGGTGTAACTGTATGCGATTGTAAA 59.938 40.000 0.00 0.00 38.78 2.01
3378 3426 4.563580 CGGTGTAACTGTATGCGATTGTAA 59.436 41.667 0.00 0.00 38.78 2.41
3379 3427 4.106909 CGGTGTAACTGTATGCGATTGTA 58.893 43.478 0.00 0.00 38.78 2.41
3380 3428 2.927477 CGGTGTAACTGTATGCGATTGT 59.073 45.455 0.00 0.00 38.78 2.71
3381 3429 3.183754 TCGGTGTAACTGTATGCGATTG 58.816 45.455 0.00 0.00 45.64 2.67
3382 3430 3.513680 TCGGTGTAACTGTATGCGATT 57.486 42.857 0.00 0.00 45.64 3.34
3383 3431 3.444916 CTTCGGTGTAACTGTATGCGAT 58.555 45.455 0.00 0.00 45.64 4.58
3384 3432 2.416296 CCTTCGGTGTAACTGTATGCGA 60.416 50.000 0.00 0.00 45.64 5.10
3385 3433 1.924524 CCTTCGGTGTAACTGTATGCG 59.075 52.381 0.00 0.00 45.64 4.73
3386 3434 3.187700 CTCCTTCGGTGTAACTGTATGC 58.812 50.000 0.00 0.00 45.64 3.14
3387 3435 4.082408 TGACTCCTTCGGTGTAACTGTATG 60.082 45.833 0.00 0.00 45.64 2.39
3388 3436 4.084287 TGACTCCTTCGGTGTAACTGTAT 58.916 43.478 0.00 0.00 45.64 2.29
3389 3437 3.489355 TGACTCCTTCGGTGTAACTGTA 58.511 45.455 0.00 0.00 45.64 2.74
3390 3438 2.313317 TGACTCCTTCGGTGTAACTGT 58.687 47.619 0.00 0.00 45.64 3.55
3392 3440 2.897969 ACATGACTCCTTCGGTGTAACT 59.102 45.455 0.00 0.00 36.74 2.24
3393 3441 2.993899 CACATGACTCCTTCGGTGTAAC 59.006 50.000 0.00 0.00 30.97 2.50
3394 3442 2.631062 ACACATGACTCCTTCGGTGTAA 59.369 45.455 0.00 0.00 41.22 2.41
3395 3443 2.029380 CACACATGACTCCTTCGGTGTA 60.029 50.000 0.00 0.00 41.14 2.90
3396 3444 1.048601 ACACATGACTCCTTCGGTGT 58.951 50.000 0.00 0.00 39.35 4.16
3397 3445 1.000843 TCACACATGACTCCTTCGGTG 59.999 52.381 0.00 0.00 37.86 4.94
3398 3446 1.338107 TCACACATGACTCCTTCGGT 58.662 50.000 0.00 0.00 0.00 4.69
3399 3447 2.094026 TCATCACACATGACTCCTTCGG 60.094 50.000 0.00 0.00 37.79 4.30
3400 3448 3.236632 TCATCACACATGACTCCTTCG 57.763 47.619 0.00 0.00 37.79 3.79
3401 3449 4.511527 ACATCATCACACATGACTCCTTC 58.488 43.478 0.00 0.00 37.79 3.46
3402 3450 4.564782 ACATCATCACACATGACTCCTT 57.435 40.909 0.00 0.00 37.79 3.36
3403 3451 4.019950 TGAACATCATCACACATGACTCCT 60.020 41.667 0.00 0.00 37.79 3.69
3404 3452 4.256110 TGAACATCATCACACATGACTCC 58.744 43.478 0.00 0.00 37.79 3.85
3415 3463 9.181061 AGTATTGAAATCATGTGAACATCATCA 57.819 29.630 0.00 0.00 33.61 3.07
3436 3484 8.106247 TCAAGCGAGGAAAATTTACAAGTATT 57.894 30.769 0.00 0.00 0.00 1.89
3437 3485 7.681939 TCAAGCGAGGAAAATTTACAAGTAT 57.318 32.000 0.00 0.00 0.00 2.12
3438 3486 7.499321 TTCAAGCGAGGAAAATTTACAAGTA 57.501 32.000 0.00 0.00 0.00 2.24
3439 3487 6.385649 TTCAAGCGAGGAAAATTTACAAGT 57.614 33.333 0.00 0.00 0.00 3.16
3440 3488 7.873739 AATTCAAGCGAGGAAAATTTACAAG 57.126 32.000 0.00 0.00 0.00 3.16
3441 3489 9.921637 AATAATTCAAGCGAGGAAAATTTACAA 57.078 25.926 0.00 0.00 0.00 2.41
3442 3490 9.921637 AAATAATTCAAGCGAGGAAAATTTACA 57.078 25.926 0.00 0.00 29.53 2.41
3448 3496 9.751542 TGTTTTAAATAATTCAAGCGAGGAAAA 57.248 25.926 0.00 0.00 0.00 2.29
3449 3497 9.921637 ATGTTTTAAATAATTCAAGCGAGGAAA 57.078 25.926 0.00 0.00 0.00 3.13
3450 3498 9.352784 CATGTTTTAAATAATTCAAGCGAGGAA 57.647 29.630 0.00 0.00 0.00 3.36
3451 3499 7.487829 GCATGTTTTAAATAATTCAAGCGAGGA 59.512 33.333 0.00 0.00 0.00 3.71
3452 3500 7.275341 TGCATGTTTTAAATAATTCAAGCGAGG 59.725 33.333 0.00 0.00 0.00 4.63
3453 3501 8.172159 TGCATGTTTTAAATAATTCAAGCGAG 57.828 30.769 0.00 0.00 0.00 5.03
3454 3502 8.700722 ATGCATGTTTTAAATAATTCAAGCGA 57.299 26.923 0.00 0.00 0.00 4.93
3500 3548 6.449830 AATAACAACCTAGGAACCTCTGTT 57.550 37.500 17.98 15.27 37.42 3.16
3501 3549 6.449830 AAATAACAACCTAGGAACCTCTGT 57.550 37.500 17.98 5.74 0.00 3.41
3502 3550 7.391620 TGTAAATAACAACCTAGGAACCTCTG 58.608 38.462 17.98 5.12 34.29 3.35
3503 3551 7.563724 TGTAAATAACAACCTAGGAACCTCT 57.436 36.000 17.98 0.00 34.29 3.69
3504 3552 8.044908 TCATGTAAATAACAACCTAGGAACCTC 58.955 37.037 17.98 0.00 42.70 3.85
3505 3553 7.924541 TCATGTAAATAACAACCTAGGAACCT 58.075 34.615 17.98 0.00 42.70 3.50
3506 3554 8.570068 TTCATGTAAATAACAACCTAGGAACC 57.430 34.615 17.98 0.00 42.70 3.62
3538 3586 8.918202 TTTTGTGAGGTCTCTATGTATGTTTT 57.082 30.769 0.00 0.00 0.00 2.43
3539 3587 8.918202 TTTTTGTGAGGTCTCTATGTATGTTT 57.082 30.769 0.00 0.00 0.00 2.83
3540 3588 8.375506 TCTTTTTGTGAGGTCTCTATGTATGTT 58.624 33.333 0.00 0.00 0.00 2.71
3541 3589 7.907389 TCTTTTTGTGAGGTCTCTATGTATGT 58.093 34.615 0.00 0.00 0.00 2.29
3542 3590 8.954950 ATCTTTTTGTGAGGTCTCTATGTATG 57.045 34.615 0.00 0.00 0.00 2.39
3545 3593 9.965902 ATTAATCTTTTTGTGAGGTCTCTATGT 57.034 29.630 0.00 0.00 0.00 2.29
3549 3597 8.924511 TCAATTAATCTTTTTGTGAGGTCTCT 57.075 30.769 0.00 0.00 0.00 3.10
3550 3598 9.780413 GATCAATTAATCTTTTTGTGAGGTCTC 57.220 33.333 0.00 0.00 0.00 3.36
3551 3599 9.300681 TGATCAATTAATCTTTTTGTGAGGTCT 57.699 29.630 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.