Multiple sequence alignment - TraesCS1A01G032000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G032000 chr1A 100.000 6331 0 0 1 6331 14749581 14743251 0.000000e+00 11692.0
1 TraesCS1A01G032000 chr1A 82.308 130 21 2 1 129 372030055 372030183 1.870000e-20 111.0
2 TraesCS1A01G032000 chr1A 92.000 75 6 0 6218 6292 511792854 511792928 8.680000e-19 106.0
3 TraesCS1A01G032000 chr1D 90.723 3417 263 33 2510 5902 13704944 13701558 0.000000e+00 4505.0
4 TraesCS1A01G032000 chr1D 92.513 3152 205 19 2513 5654 13800604 13797474 0.000000e+00 4484.0
5 TraesCS1A01G032000 chr1D 91.659 2254 171 16 265 2514 13803305 13801065 0.000000e+00 3105.0
6 TraesCS1A01G032000 chr1D 87.973 2378 221 24 174 2512 13707340 13704989 0.000000e+00 2747.0
7 TraesCS1A01G032000 chr1D 91.781 365 29 1 2151 2514 13801014 13800650 2.040000e-139 507.0
8 TraesCS1A01G032000 chr1D 96.172 209 6 1 5695 5903 13797480 13797274 2.190000e-89 340.0
9 TraesCS1A01G032000 chr1D 82.727 220 22 9 5993 6198 74766773 74766990 1.400000e-41 182.0
10 TraesCS1A01G032000 chr1D 100.000 35 0 0 6295 6329 5559638 5559672 1.470000e-06 65.8
11 TraesCS1A01G032000 chr1B 89.365 3404 260 41 2513 5901 20572244 20575560 0.000000e+00 4187.0
12 TraesCS1A01G032000 chr1B 89.985 2027 166 14 3886 5902 20016705 20014706 0.000000e+00 2584.0
13 TraesCS1A01G032000 chr1B 88.611 1879 179 15 266 2140 20569937 20571784 0.000000e+00 2252.0
14 TraesCS1A01G032000 chr1B 89.642 1313 110 13 3028 4330 19479015 19477719 0.000000e+00 1648.0
15 TraesCS1A01G032000 chr1B 89.490 1313 112 13 3028 4330 19380088 19378792 0.000000e+00 1637.0
16 TraesCS1A01G032000 chr1B 89.730 1295 111 10 3028 4312 19552095 19550813 0.000000e+00 1635.0
17 TraesCS1A01G032000 chr1B 89.269 1286 111 12 1 1267 19914123 19912846 0.000000e+00 1585.0
18 TraesCS1A01G032000 chr1B 87.059 1360 138 21 4549 5903 19439110 19437784 0.000000e+00 1502.0
19 TraesCS1A01G032000 chr1B 87.014 1363 139 22 4549 5906 19537746 19536417 0.000000e+00 1502.0
20 TraesCS1A01G032000 chr1B 89.522 1193 103 11 3028 4210 19343342 19342162 0.000000e+00 1491.0
21 TraesCS1A01G032000 chr1B 89.355 1193 105 11 3028 4210 19442080 19440900 0.000000e+00 1480.0
22 TraesCS1A01G032000 chr1B 86.397 1213 129 28 177 1370 20037204 20036009 0.000000e+00 1293.0
23 TraesCS1A01G032000 chr1B 91.224 923 74 4 345 1267 19808667 19807752 0.000000e+00 1249.0
24 TraesCS1A01G032000 chr1B 91.135 925 72 6 345 1267 19688574 19687658 0.000000e+00 1245.0
25 TraesCS1A01G032000 chr1B 87.274 1108 108 18 4549 5654 19340380 19339304 0.000000e+00 1234.0
26 TraesCS1A01G032000 chr1B 90.919 925 74 6 345 1267 19588234 19587318 0.000000e+00 1234.0
27 TraesCS1A01G032000 chr1B 87.849 823 71 10 1424 2223 19553510 19552694 0.000000e+00 939.0
28 TraesCS1A01G032000 chr1B 92.894 577 34 4 648 1222 19554079 19553508 0.000000e+00 832.0
29 TraesCS1A01G032000 chr1B 85.757 667 62 9 1 643 19554824 19554167 0.000000e+00 675.0
30 TraesCS1A01G032000 chr1B 93.235 340 23 0 1633 1972 20017735 20017396 9.480000e-138 501.0
31 TraesCS1A01G032000 chr1B 90.196 306 28 2 1 305 20577027 20577331 1.280000e-106 398.0
32 TraesCS1A01G032000 chr1B 92.713 247 17 1 4312 4558 19475450 19475205 7.810000e-94 355.0
33 TraesCS1A01G032000 chr1B 92.308 247 18 1 4312 4558 19539953 19539708 3.630000e-92 350.0
34 TraesCS1A01G032000 chr1B 91.903 247 19 1 4312 4558 19376523 19376278 1.690000e-90 344.0
35 TraesCS1A01G032000 chr1B 84.545 220 26 6 4549 4762 19374309 19374092 1.790000e-50 211.0
36 TraesCS1A01G032000 chr1B 92.361 144 11 0 1997 2140 20017403 20017260 8.320000e-49 206.0
37 TraesCS1A01G032000 chr1B 85.864 191 25 2 5713 5903 19374041 19373853 1.080000e-47 202.0
38 TraesCS1A01G032000 chr1B 85.340 191 26 2 5713 5903 19339289 19339101 5.010000e-46 196.0
39 TraesCS1A01G032000 chr1B 85.204 196 23 5 5713 5906 19472963 19472772 5.010000e-46 196.0
40 TraesCS1A01G032000 chr1B 91.549 142 10 1 1 140 19588410 19588269 1.800000e-45 195.0
41 TraesCS1A01G032000 chr1B 91.549 142 10 1 1 140 19688750 19688609 1.800000e-45 195.0
42 TraesCS1A01G032000 chr1B 91.489 141 11 1 1 140 19808842 19808702 6.480000e-45 193.0
43 TraesCS1A01G032000 chr1B 86.957 92 10 2 1367 1458 20017821 20017732 1.120000e-17 102.0
44 TraesCS1A01G032000 chr7D 91.542 201 14 3 5904 6104 622345046 622345243 2.250000e-69 274.0
45 TraesCS1A01G032000 chr7D 83.041 171 17 11 6058 6222 620745947 620745783 1.840000e-30 145.0
46 TraesCS1A01G032000 chr7D 82.456 171 22 8 6058 6224 32769685 32769851 6.620000e-30 143.0
47 TraesCS1A01G032000 chr7D 91.892 74 6 0 6218 6291 259891689 259891762 3.120000e-18 104.0
48 TraesCS1A01G032000 chr5B 83.436 326 22 14 5923 6218 538616917 538616594 2.250000e-69 274.0
49 TraesCS1A01G032000 chr5B 84.112 214 19 8 5993 6192 20499021 20499233 6.480000e-45 193.0
50 TraesCS1A01G032000 chr4B 82.972 323 26 14 5923 6218 561790188 561789868 1.350000e-66 265.0
51 TraesCS1A01G032000 chr4B 91.892 74 5 1 6218 6291 328146863 328146791 1.120000e-17 102.0
52 TraesCS1A01G032000 chr3B 90.960 177 14 2 5904 6080 501964172 501964346 2.950000e-58 237.0
53 TraesCS1A01G032000 chr3B 85.475 179 19 5 6025 6198 17058729 17058905 5.040000e-41 180.0
54 TraesCS1A01G032000 chr3A 90.055 181 16 2 5904 6084 507705150 507705328 3.820000e-57 233.0
55 TraesCS1A01G032000 chr4A 83.721 172 19 9 6058 6224 673702878 673703045 3.060000e-33 154.0
56 TraesCS1A01G032000 chr5D 83.636 165 20 7 6062 6222 507455443 507455282 1.420000e-31 148.0
57 TraesCS1A01G032000 chr5D 91.892 74 6 0 6218 6291 507577769 507577696 3.120000e-18 104.0
58 TraesCS1A01G032000 chr5D 91.892 74 6 0 6218 6291 507578081 507578008 3.120000e-18 104.0
59 TraesCS1A01G032000 chr2B 83.333 168 20 8 6056 6219 438474992 438475155 1.420000e-31 148.0
60 TraesCS1A01G032000 chr2B 90.476 105 9 1 6226 6329 147910971 147911075 3.080000e-28 137.0
61 TraesCS1A01G032000 chr2B 94.521 73 4 0 6219 6291 147910496 147910568 5.190000e-21 113.0
62 TraesCS1A01G032000 chr2B 93.333 75 5 0 6218 6292 147912447 147912521 1.870000e-20 111.0
63 TraesCS1A01G032000 chr2B 95.652 69 3 0 5923 5991 626575361 626575293 1.870000e-20 111.0
64 TraesCS1A01G032000 chr2B 100.000 43 0 0 5904 5946 396168624 396168666 5.260000e-11 80.5
65 TraesCS1A01G032000 chr2D 83.750 160 21 5 6063 6219 590173704 590173861 5.110000e-31 147.0
66 TraesCS1A01G032000 chr6A 82.738 168 23 6 6058 6222 499568158 499567994 1.840000e-30 145.0
67 TraesCS1A01G032000 chr6B 82.353 170 24 6 6058 6224 182973578 182973412 6.620000e-30 143.0
68 TraesCS1A01G032000 chrUn 97.333 75 2 0 5904 5978 89774228 89774154 1.850000e-25 128.0
69 TraesCS1A01G032000 chr7B 94.805 77 4 0 5904 5980 552074654 552074730 3.100000e-23 121.0
70 TraesCS1A01G032000 chr7B 91.781 73 6 0 6219 6291 239760826 239760898 1.120000e-17 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G032000 chr1A 14743251 14749581 6330 True 11692.000000 11692 100.000000 1 6331 1 chr1A.!!$R1 6330
1 TraesCS1A01G032000 chr1D 13701558 13707340 5782 True 3626.000000 4505 89.348000 174 5902 2 chr1D.!!$R1 5728
2 TraesCS1A01G032000 chr1D 13797274 13803305 6031 True 2109.000000 4484 93.031250 265 5903 4 chr1D.!!$R2 5638
3 TraesCS1A01G032000 chr1B 20569937 20577331 7394 False 2279.000000 4187 89.390667 1 5901 3 chr1B.!!$F1 5900
4 TraesCS1A01G032000 chr1B 19912846 19914123 1277 True 1585.000000 1585 89.269000 1 1267 1 chr1B.!!$R1 1266
5 TraesCS1A01G032000 chr1B 19437784 19442080 4296 True 1491.000000 1502 88.207000 3028 5903 2 chr1B.!!$R5 2875
6 TraesCS1A01G032000 chr1B 20036009 20037204 1195 True 1293.000000 1293 86.397000 177 1370 1 chr1B.!!$R2 1193
7 TraesCS1A01G032000 chr1B 19550813 19554824 4011 True 1020.250000 1635 89.057500 1 4312 4 chr1B.!!$R8 4311
8 TraesCS1A01G032000 chr1B 19339101 19343342 4241 True 973.666667 1491 87.378667 3028 5903 3 chr1B.!!$R3 2875
9 TraesCS1A01G032000 chr1B 19536417 19539953 3536 True 926.000000 1502 89.661000 4312 5906 2 chr1B.!!$R7 1594
10 TraesCS1A01G032000 chr1B 20014706 20017821 3115 True 848.250000 2584 90.634500 1367 5902 4 chr1B.!!$R12 4535
11 TraesCS1A01G032000 chr1B 19472772 19479015 6243 True 733.000000 1648 89.186333 3028 5906 3 chr1B.!!$R6 2878
12 TraesCS1A01G032000 chr1B 19807752 19808842 1090 True 721.000000 1249 91.356500 1 1267 2 chr1B.!!$R11 1266
13 TraesCS1A01G032000 chr1B 19687658 19688750 1092 True 720.000000 1245 91.342000 1 1267 2 chr1B.!!$R10 1266
14 TraesCS1A01G032000 chr1B 19587318 19588410 1092 True 714.500000 1234 91.234000 1 1267 2 chr1B.!!$R9 1266
15 TraesCS1A01G032000 chr1B 19373853 19380088 6235 True 598.500000 1637 87.950500 3028 5903 4 chr1B.!!$R4 2875

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
533 581 0.033503 TCAGGAGTGAGGATACGGCA 60.034 55.000 0.0 0.0 46.39 5.69 F
724 855 0.179234 TTGGTGAAGCGGTCAAGTGA 59.821 50.000 0.0 0.0 38.23 3.41 F
1672 1812 0.371989 TAACATCGCCGTGCATTTCG 59.628 50.000 0.0 0.0 0.00 3.46 F
2951 3627 0.393808 ACACCGCTTTGTTCACAGGT 60.394 50.000 0.0 0.0 0.00 4.00 F
3341 4022 1.883275 CACGGGTGTTTAGGCATTCAA 59.117 47.619 0.0 0.0 0.00 2.69 F
3521 4203 2.090658 CGAACGAGTGTCAATGTAGTGC 59.909 50.000 0.0 0.0 0.00 4.40 F
4682 9646 2.290960 GCCAGACAACCCCTCAATAGTT 60.291 50.000 0.0 0.0 0.00 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2375 2988 0.188342 ACACCCCAAAAGACTGGCAT 59.812 50.000 0.00 0.00 34.88 4.40 R
2685 3346 0.321653 GGACCAGCTCGTGTTCCATT 60.322 55.000 0.00 0.00 0.00 3.16 R
3659 4341 0.250513 GATGCCTGGAACGGAGACTT 59.749 55.000 0.00 0.00 36.31 3.01 R
4636 9600 0.032130 CCGACATCGTACCATGGAGG 59.968 60.000 21.47 8.10 39.83 4.30 R
4682 9646 0.106708 GAGTGTGGTTGTCCAGCAGA 59.893 55.000 0.00 0.00 45.24 4.26 R
4721 9686 1.002659 TCGACGTCCAATTTCCATGGT 59.997 47.619 12.58 0.00 39.09 3.55 R
6234 12532 1.927487 ACATGCCCAAATGAGCTCAA 58.073 45.000 22.50 1.84 0.00 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
103 111 8.089597 TCAAGTATTTTATGTCTACGACCAACA 58.910 33.333 0.00 0.00 0.00 3.33
104 112 8.879759 CAAGTATTTTATGTCTACGACCAACAT 58.120 33.333 0.00 0.00 37.40 2.71
105 113 8.420374 AGTATTTTATGTCTACGACCAACATG 57.580 34.615 0.00 0.00 35.38 3.21
115 125 4.320608 ACGACCAACATGAAAAATTGCT 57.679 36.364 0.00 0.00 0.00 3.91
170 202 6.151648 TCAGATGCAAAATCCCTAAGTTTCAG 59.848 38.462 0.00 0.00 0.00 3.02
172 204 3.057596 TGCAAAATCCCTAAGTTTCAGCG 60.058 43.478 0.00 0.00 0.00 5.18
207 239 1.836999 TAATGTGCCCTCGTGCAGGT 61.837 55.000 6.26 0.00 43.02 4.00
216 248 2.615493 CCCTCGTGCAGGTTTCAACTAT 60.615 50.000 6.26 0.00 41.51 2.12
243 275 3.566261 CGTGAGGCAATCAAGCGT 58.434 55.556 0.00 0.00 40.43 5.07
258 290 2.792947 GCGTCCGGATAGGGCTTGA 61.793 63.158 7.81 0.00 44.20 3.02
271 319 2.281070 CTTGACAGGTGCGTGCCT 60.281 61.111 0.00 0.00 39.99 4.75
280 328 0.391130 GGTGCGTGCCTCTGTGAATA 60.391 55.000 0.00 0.00 0.00 1.75
343 391 2.852449 TGTCAAGAGGGCCCAATAGATT 59.148 45.455 27.56 0.00 0.00 2.40
356 404 4.449081 CCCAATAGATTATTGAAGGGGGCA 60.449 45.833 9.73 0.00 46.52 5.36
361 409 3.785887 AGATTATTGAAGGGGGCACAGTA 59.214 43.478 0.00 0.00 0.00 2.74
366 414 0.107165 GAAGGGGGCACAGTATGGAC 60.107 60.000 0.00 0.00 43.62 4.02
411 459 2.574018 GCAGGGAAAAGGGTGCACC 61.574 63.158 28.57 28.57 35.91 5.01
471 519 2.045926 GTGCTTGCGGGACTGGAT 60.046 61.111 0.00 0.00 33.31 3.41
533 581 0.033503 TCAGGAGTGAGGATACGGCA 60.034 55.000 0.00 0.00 46.39 5.69
537 585 1.202428 GGAGTGAGGATACGGCAGAAC 60.202 57.143 0.00 0.00 46.39 3.01
544 592 1.480954 GGATACGGCAGAACTGAGGAA 59.519 52.381 5.97 0.00 0.00 3.36
547 595 1.004560 CGGCAGAACTGAGGAAGCA 60.005 57.895 5.97 0.00 0.00 3.91
567 615 2.749441 GGAGCAGGAACAGCAGCC 60.749 66.667 0.00 0.00 45.86 4.85
593 641 2.159627 GGCAAAGGATGACGTGTAGTTG 59.840 50.000 0.00 0.00 0.00 3.16
594 642 2.412847 GCAAAGGATGACGTGTAGTTGC 60.413 50.000 0.00 0.00 34.05 4.17
595 643 1.710013 AAGGATGACGTGTAGTTGCG 58.290 50.000 0.00 0.00 0.00 4.85
596 644 0.885879 AGGATGACGTGTAGTTGCGA 59.114 50.000 0.00 0.00 0.00 5.10
597 645 1.135373 AGGATGACGTGTAGTTGCGAG 60.135 52.381 0.00 0.00 0.00 5.03
598 646 1.402456 GGATGACGTGTAGTTGCGAGT 60.402 52.381 0.00 0.00 0.00 4.18
599 647 2.325761 GATGACGTGTAGTTGCGAGTT 58.674 47.619 0.00 0.00 0.00 3.01
612 660 1.492319 GCGAGTTGCGTTGTGGTGTA 61.492 55.000 0.00 0.00 43.41 2.90
701 832 2.981140 GGTCAAACGAGTCTTCTCTTCG 59.019 50.000 0.00 0.00 38.45 3.79
712 843 3.869246 GTCTTCTCTTCGTTGTTGGTGAA 59.131 43.478 0.00 0.00 0.00 3.18
724 855 0.179234 TTGGTGAAGCGGTCAAGTGA 59.821 50.000 0.00 0.00 38.23 3.41
726 857 1.621317 TGGTGAAGCGGTCAAGTGATA 59.379 47.619 0.00 0.00 38.23 2.15
997 1132 3.973973 AGCTATAGGCACCATCCAAGTAA 59.026 43.478 1.04 0.00 44.79 2.24
998 1133 4.412199 AGCTATAGGCACCATCCAAGTAAA 59.588 41.667 1.04 0.00 44.79 2.01
1050 1185 2.862674 TTAATCCGGCCGCTGGTGAC 62.863 60.000 22.85 0.00 0.00 3.67
1389 1527 2.493030 CCGTCGTTGGCGTCCTAT 59.507 61.111 0.00 0.00 39.49 2.57
1507 1645 3.510360 CGTTCCTCTTACCTCCTCTTTGA 59.490 47.826 0.00 0.00 0.00 2.69
1511 1649 4.905456 TCCTCTTACCTCCTCTTTGAACAA 59.095 41.667 0.00 0.00 0.00 2.83
1526 1664 7.429633 TCTTTGAACAAGAGAGACAAGAGTAG 58.570 38.462 0.00 0.00 0.00 2.57
1527 1665 6.716934 TTGAACAAGAGAGACAAGAGTAGT 57.283 37.500 0.00 0.00 0.00 2.73
1528 1666 7.818997 TTGAACAAGAGAGACAAGAGTAGTA 57.181 36.000 0.00 0.00 0.00 1.82
1615 1754 9.661954 ATCTCATATGTAAAAAGAGGAGGTAGA 57.338 33.333 1.90 0.00 0.00 2.59
1616 1755 9.137459 TCTCATATGTAAAAAGAGGAGGTAGAG 57.863 37.037 1.90 0.00 0.00 2.43
1617 1756 9.137459 CTCATATGTAAAAAGAGGAGGTAGAGA 57.863 37.037 1.90 0.00 0.00 3.10
1636 1776 7.121315 GGTAGAGAGACCATGTTAAAATTTGCT 59.879 37.037 0.00 0.00 39.51 3.91
1672 1812 0.371989 TAACATCGCCGTGCATTTCG 59.628 50.000 0.00 0.00 0.00 3.46
1739 1879 2.610859 AGGACGCATGGGGTTCCT 60.611 61.111 14.94 14.52 0.00 3.36
1808 1948 1.225426 GGCCATGGTGCAGATCTCA 59.775 57.895 14.67 0.00 0.00 3.27
1949 2089 0.911769 TCAGGGGCATCAACTTCGAT 59.088 50.000 0.00 0.00 0.00 3.59
1971 2111 1.343782 TGCCTCATGTCATCTCCCTCT 60.344 52.381 0.00 0.00 0.00 3.69
2005 2145 1.439679 GGTACGTTGCCTCCTTCTTG 58.560 55.000 0.00 0.00 0.00 3.02
2026 2166 3.559655 TGTGAATTTGACTTGGTCTCGTG 59.440 43.478 0.00 0.00 33.15 4.35
2047 2187 4.935808 GTGACCTTGTGAATAGGTTACTGG 59.064 45.833 9.04 0.00 45.88 4.00
2153 2351 4.671590 TCTCACCTGACCCGCGGA 62.672 66.667 30.73 5.58 0.00 5.54
2168 2366 0.809385 GCGGACAGTGCTAGTGACTA 59.191 55.000 0.00 0.00 0.00 2.59
2170 2368 2.796383 GCGGACAGTGCTAGTGACTATG 60.796 54.545 0.00 0.00 0.00 2.23
2187 2385 0.821517 ATGGTCGCAACTCGGATACA 59.178 50.000 0.00 0.00 39.05 2.29
2243 2441 2.376109 CTTACTCTCCTCAAGCCGGTA 58.624 52.381 1.90 0.00 0.00 4.02
2253 2451 4.080807 TCCTCAAGCCGGTATTTTGTGATA 60.081 41.667 1.90 0.00 0.00 2.15
2276 2474 1.825474 GTGGGCTCTCTGCTTGTAGTA 59.175 52.381 0.00 0.00 42.39 1.82
2375 2988 2.038975 AGAGCCGTTCCTAGCCCA 59.961 61.111 0.00 0.00 0.00 5.36
2376 2989 1.383248 AGAGCCGTTCCTAGCCCAT 60.383 57.895 0.00 0.00 0.00 4.00
2400 3014 2.105821 CAGTCTTTTGGGGTGTAGTGGA 59.894 50.000 0.00 0.00 0.00 4.02
2419 3033 5.896678 AGTGGATTCTCTGCTAGTAGTTGAT 59.103 40.000 7.77 0.74 0.00 2.57
2454 3068 5.708948 CACCAAAAATGTCCGAACATATGT 58.291 37.500 1.41 1.41 45.48 2.29
2499 3113 4.698304 TGGGCTGCTAACAAGTTGTATTAC 59.302 41.667 9.37 0.30 0.00 1.89
2526 3187 2.279517 CCACGATACTCGGGCAGC 60.280 66.667 1.29 0.00 42.99 5.25
2557 3218 3.657398 TTAGTCCCACCTCAGATACGA 57.343 47.619 0.00 0.00 0.00 3.43
2578 3239 0.980231 AGCAGGCTAGGACCTCCTTG 60.980 60.000 0.00 0.00 46.09 3.61
2603 3264 2.262183 AGAGTGTCACGCTCTCCTG 58.738 57.895 15.52 0.00 46.73 3.86
2618 3279 1.228124 CCTGAGGCCGGTGTTTTGA 60.228 57.895 1.90 0.00 0.00 2.69
2630 3291 3.316868 CGGTGTTTTGAAATGTAGTGGGT 59.683 43.478 0.00 0.00 0.00 4.51
2637 3298 4.974645 TGAAATGTAGTGGGTTCTCTGT 57.025 40.909 0.00 0.00 0.00 3.41
2648 3309 3.650942 TGGGTTCTCTGTTTGTAGTGGAT 59.349 43.478 0.00 0.00 0.00 3.41
2652 3313 5.998363 GGTTCTCTGTTTGTAGTGGATTCTT 59.002 40.000 0.00 0.00 0.00 2.52
2685 3346 4.321601 CCGAAAATGTTTGAACCTATGCCA 60.322 41.667 0.00 0.00 0.00 4.92
2691 3352 4.155709 TGTTTGAACCTATGCCAATGGAA 58.844 39.130 2.05 0.00 0.00 3.53
2725 3386 2.666190 GCTGCCAACACGCTCTCA 60.666 61.111 0.00 0.00 0.00 3.27
2759 3420 6.705381 CACTCTCCTATTTTCCTCTATGCTTG 59.295 42.308 0.00 0.00 0.00 4.01
2767 3428 9.282569 CTATTTTCCTCTATGCTTGAGCTTTAT 57.717 33.333 4.44 0.00 42.66 1.40
2772 3433 3.879295 TCTATGCTTGAGCTTTATGTGCC 59.121 43.478 4.44 0.00 42.66 5.01
2827 3498 0.806102 GTCTCTGTGTGTGTGTGCGT 60.806 55.000 0.00 0.00 0.00 5.24
2828 3499 0.741915 TCTCTGTGTGTGTGTGCGTA 59.258 50.000 0.00 0.00 0.00 4.42
2846 3522 5.968848 GTGCGTATTTCTTGTTTCAGTTTCA 59.031 36.000 0.00 0.00 0.00 2.69
2847 3523 6.470877 GTGCGTATTTCTTGTTTCAGTTTCAA 59.529 34.615 0.00 0.00 0.00 2.69
2873 3549 7.875554 ACCATACTCTTTCTTTCTGTTTCTCTC 59.124 37.037 0.00 0.00 0.00 3.20
2948 3624 1.542030 ACAAACACCGCTTTGTTCACA 59.458 42.857 0.73 0.00 40.72 3.58
2951 3627 0.393808 ACACCGCTTTGTTCACAGGT 60.394 50.000 0.00 0.00 0.00 4.00
2966 3642 3.030652 GGTCCACAAAGTGCACCG 58.969 61.111 14.63 4.99 34.51 4.94
3000 3676 4.232221 CAAAAATGTCTGTCTCCATGTGC 58.768 43.478 0.00 0.00 0.00 4.57
3032 3708 6.549736 CCTACCCTGGGTTATAAAAATTCCAG 59.450 42.308 26.00 10.01 40.86 3.86
3041 3717 7.068348 GGGTTATAAAAATTCCAGACTCTTCCC 59.932 40.741 0.00 0.00 0.00 3.97
3094 3770 4.202223 ACGCAGGATACGGAGATAAAACAT 60.202 41.667 0.00 0.00 46.39 2.71
3190 3867 5.694816 TGAAAACAATAACACATACCGCAG 58.305 37.500 0.00 0.00 0.00 5.18
3193 3870 5.734855 AACAATAACACATACCGCAGATC 57.265 39.130 0.00 0.00 0.00 2.75
3224 3901 2.619931 TGGAGGAGATTGTGTCCAGAA 58.380 47.619 0.00 0.00 36.43 3.02
3341 4022 1.883275 CACGGGTGTTTAGGCATTCAA 59.117 47.619 0.00 0.00 0.00 2.69
3415 4097 7.000575 TCCATTCGTCGATGAATCTAAAAAC 57.999 36.000 26.29 0.00 36.46 2.43
3475 4157 7.013369 GTCACTCAAATTGAAGACCTAAAACCT 59.987 37.037 13.86 0.00 30.10 3.50
3521 4203 2.090658 CGAACGAGTGTCAATGTAGTGC 59.909 50.000 0.00 0.00 0.00 4.40
3667 4349 4.148825 CCCGGCCTGAAGTCTCCG 62.149 72.222 0.00 0.00 41.41 4.63
3751 4433 6.775629 GCATATCTTAATTGGAGGGGTTGTAA 59.224 38.462 0.00 0.00 0.00 2.41
3889 4573 4.991056 GTGATCAACAGACATGTGTGTACT 59.009 41.667 26.94 15.18 40.39 2.73
3934 4618 6.531948 CGGAACTTTCAACTCAGTAGGAATAG 59.468 42.308 0.00 0.00 0.00 1.73
3948 4632 4.065321 AGGAATAGCATCAGTTTCCTCG 57.935 45.455 0.00 0.00 43.45 4.63
3973 4657 8.774586 CGGTTCAATGGATTAATTTCTACTAGG 58.225 37.037 0.00 0.00 0.00 3.02
3985 4669 9.832445 TTAATTTCTACTAGGAAAAGCATCGAT 57.168 29.630 0.00 0.00 38.46 3.59
4020 4705 3.772572 TCACCGGTTCATAAAGGATCAGA 59.227 43.478 2.97 0.00 0.00 3.27
4063 4750 3.731867 GCAAATTTAGCACCCATCACTCG 60.732 47.826 7.47 0.00 0.00 4.18
4089 4776 6.368791 ACTCTTTTGTCTTTCCTTGTTTTTGC 59.631 34.615 0.00 0.00 0.00 3.68
4287 4976 4.474651 TGATAATGTTCCCACTGGAGATGT 59.525 41.667 0.00 0.00 43.07 3.06
4302 4991 7.175641 CACTGGAGATGTGATTTTCTTAAAGGT 59.824 37.037 0.00 0.00 37.60 3.50
4303 4992 8.383175 ACTGGAGATGTGATTTTCTTAAAGGTA 58.617 33.333 0.00 0.00 0.00 3.08
4304 4993 9.401058 CTGGAGATGTGATTTTCTTAAAGGTAT 57.599 33.333 0.00 0.00 0.00 2.73
4406 7382 6.590292 ACTCAAAACCTTGTAGATACGTGATG 59.410 38.462 0.00 0.00 33.94 3.07
4419 7397 2.838736 ACGTGATGCACCCTCATTATC 58.161 47.619 0.00 0.00 0.00 1.75
4423 7401 4.454678 GTGATGCACCCTCATTATCTCAA 58.545 43.478 0.00 0.00 0.00 3.02
4427 7405 6.938596 TGATGCACCCTCATTATCTCAAATAG 59.061 38.462 0.00 0.00 0.00 1.73
4522 7500 3.788434 AACAATGCGTTCGACTTGTAG 57.212 42.857 11.10 0.00 29.27 2.74
4607 9571 3.230134 TGCCCTTGTGCAGAAGTAATTT 58.770 40.909 20.95 0.00 36.04 1.82
4614 9578 3.754323 TGTGCAGAAGTAATTTAACCCCG 59.246 43.478 0.00 0.00 0.00 5.73
4627 9591 2.873094 AACCCCGGGTTTTCTCTTAG 57.127 50.000 21.85 1.55 44.33 2.18
4636 9600 6.315642 CCCGGGTTTTCTCTTAGTAAGATTTC 59.684 42.308 14.18 3.42 36.82 2.17
4641 9605 8.101419 GGTTTTCTCTTAGTAAGATTTCCTCCA 58.899 37.037 12.98 0.00 36.82 3.86
4642 9606 9.674068 GTTTTCTCTTAGTAAGATTTCCTCCAT 57.326 33.333 12.98 0.00 36.82 3.41
4646 9610 8.065627 TCTCTTAGTAAGATTTCCTCCATGGTA 58.934 37.037 12.58 0.00 36.82 3.25
4682 9646 2.290960 GCCAGACAACCCCTCAATAGTT 60.291 50.000 0.00 0.00 0.00 2.24
4687 9651 2.644798 ACAACCCCTCAATAGTTCTGCT 59.355 45.455 0.00 0.00 0.00 4.24
4721 9686 7.770433 CACACTCTCATATCAAAACCCTCAATA 59.230 37.037 0.00 0.00 0.00 1.90
4728 9693 4.666412 TCAAAACCCTCAATACCATGGA 57.334 40.909 21.47 2.01 0.00 3.41
4731 9696 6.022315 TCAAAACCCTCAATACCATGGAAAT 58.978 36.000 21.47 8.72 0.00 2.17
4734 9703 4.289245 ACCCTCAATACCATGGAAATTGG 58.711 43.478 28.50 22.23 40.26 3.16
4737 9706 4.036734 CCTCAATACCATGGAAATTGGACG 59.963 45.833 28.50 21.01 37.69 4.79
4765 9734 8.077991 CGATCATATAGCAAAATTCAACACCAT 58.922 33.333 0.00 0.00 0.00 3.55
4766 9735 9.403110 GATCATATAGCAAAATTCAACACCATC 57.597 33.333 0.00 0.00 0.00 3.51
4767 9736 7.715657 TCATATAGCAAAATTCAACACCATCC 58.284 34.615 0.00 0.00 0.00 3.51
4768 9737 5.999205 ATAGCAAAATTCAACACCATCCA 57.001 34.783 0.00 0.00 0.00 3.41
4816 9785 5.280654 AGCAAAATGAACCACAACTCAAT 57.719 34.783 0.00 0.00 0.00 2.57
4850 9819 5.601662 TGCCAAAATTAAATTCAACGTCCA 58.398 33.333 0.00 0.00 0.00 4.02
4868 9837 7.818997 ACGTCCATCTACAATAGTGAATCTA 57.181 36.000 0.00 0.00 0.00 1.98
5048 10017 6.097839 ACATACAGACGGTACTCCATATGTTT 59.902 38.462 1.24 0.00 34.07 2.83
5070 10039 7.040548 TGTTTGATGACAATGACTGCATAAAGA 60.041 33.333 0.00 0.00 35.85 2.52
5151 10120 1.608717 CTTGCCGGCTACTCCAGAGT 61.609 60.000 29.70 5.50 45.02 3.24
5222 10191 0.793617 ACTCTGAGGGAGGGAAGGAA 59.206 55.000 9.85 0.00 45.83 3.36
5231 10200 1.073923 GGAGGGAAGGAAAGAACTGCA 59.926 52.381 0.00 0.00 0.00 4.41
5251 10220 3.209410 CACAAGAGTTTCTGAAGCTGGT 58.791 45.455 11.63 4.57 0.00 4.00
5647 10622 1.348036 GTCTCACTTTGGCCCAGTAGT 59.652 52.381 0.00 0.00 0.00 2.73
5830 10855 5.279708 GCCTCTACATAGTTAGGATGCACAT 60.280 44.000 0.00 0.00 0.00 3.21
5971 11542 9.979578 TGCAAAACTTTCATATTCTTTATGTGT 57.020 25.926 0.00 0.00 0.00 3.72
5990 11561 6.441093 TGTGTTAATGAAAGAGATCATGCC 57.559 37.500 0.00 0.00 39.90 4.40
5992 11563 5.357878 GTGTTAATGAAAGAGATCATGCCCA 59.642 40.000 0.00 0.00 39.90 5.36
5994 11565 6.608405 TGTTAATGAAAGAGATCATGCCCATT 59.392 34.615 0.00 2.08 39.90 3.16
5995 11566 7.124599 TGTTAATGAAAGAGATCATGCCCATTT 59.875 33.333 0.00 0.00 39.90 2.32
6041 11612 9.763465 TTTTCTTTTAAATAGTAGCATACACGC 57.237 29.630 0.00 0.00 46.26 5.34
6042 11613 7.473027 TCTTTTAAATAGTAGCATACACGCC 57.527 36.000 0.00 0.00 46.26 5.68
6043 11614 7.270047 TCTTTTAAATAGTAGCATACACGCCT 58.730 34.615 0.00 0.00 46.26 5.52
6045 11616 8.583810 TTTTAAATAGTAGCATACACGCCTAG 57.416 34.615 0.00 0.00 46.26 3.02
6046 11617 5.786264 AAATAGTAGCATACACGCCTAGT 57.214 39.130 0.00 0.00 46.26 2.57
6047 11618 5.786264 AATAGTAGCATACACGCCTAGTT 57.214 39.130 0.00 0.00 46.26 2.24
6048 11619 5.786264 ATAGTAGCATACACGCCTAGTTT 57.214 39.130 0.00 0.00 46.26 2.66
6049 11620 4.467198 AGTAGCATACACGCCTAGTTTT 57.533 40.909 0.00 0.00 46.26 2.43
6051 11622 3.328382 AGCATACACGCCTAGTTTTCA 57.672 42.857 0.00 0.00 0.00 2.69
6052 11623 3.873910 AGCATACACGCCTAGTTTTCAT 58.126 40.909 0.00 0.00 0.00 2.57
6053 11624 4.261801 AGCATACACGCCTAGTTTTCATT 58.738 39.130 0.00 0.00 0.00 2.57
6054 11625 4.700213 AGCATACACGCCTAGTTTTCATTT 59.300 37.500 0.00 0.00 0.00 2.32
6056 11627 6.037172 AGCATACACGCCTAGTTTTCATTTAG 59.963 38.462 0.00 0.00 0.00 1.85
6058 11629 7.625606 GCATACACGCCTAGTTTTCATTTAGTT 60.626 37.037 0.00 0.00 0.00 2.24
6059 11630 6.237313 ACACGCCTAGTTTTCATTTAGTTC 57.763 37.500 0.00 0.00 0.00 3.01
6060 11631 5.995897 ACACGCCTAGTTTTCATTTAGTTCT 59.004 36.000 0.00 0.00 0.00 3.01
6063 11634 7.860872 CACGCCTAGTTTTCATTTAGTTCTTTT 59.139 33.333 0.00 0.00 0.00 2.27
6064 11635 8.410912 ACGCCTAGTTTTCATTTAGTTCTTTTT 58.589 29.630 0.00 0.00 0.00 1.94
6182 12480 9.816354 AAGCTTTTTAGTTGATTCTTTTTGCTA 57.184 25.926 0.00 0.00 0.00 3.49
6183 12481 9.987272 AGCTTTTTAGTTGATTCTTTTTGCTAT 57.013 25.926 0.00 0.00 0.00 2.97
6223 12521 9.066892 AGTTTTGTTTTAGTTGATCATAGCAGA 57.933 29.630 0.00 0.00 0.00 4.26
6224 12522 9.118236 GTTTTGTTTTAGTTGATCATAGCAGAC 57.882 33.333 0.00 0.00 0.00 3.51
6225 12523 6.647212 TGTTTTAGTTGATCATAGCAGACG 57.353 37.500 0.00 0.00 0.00 4.18
6226 12524 6.163476 TGTTTTAGTTGATCATAGCAGACGT 58.837 36.000 0.00 0.00 0.00 4.34
6228 12526 7.274904 TGTTTTAGTTGATCATAGCAGACGTAC 59.725 37.037 0.00 0.00 0.00 3.67
6229 12527 6.694877 TTAGTTGATCATAGCAGACGTACT 57.305 37.500 0.00 0.00 0.00 2.73
6230 12528 7.797038 TTAGTTGATCATAGCAGACGTACTA 57.203 36.000 0.00 0.00 0.00 1.82
6231 12529 6.694877 AGTTGATCATAGCAGACGTACTAA 57.305 37.500 0.00 0.00 0.00 2.24
6232 12530 6.730175 AGTTGATCATAGCAGACGTACTAAG 58.270 40.000 0.00 0.00 0.00 2.18
6233 12531 6.319152 AGTTGATCATAGCAGACGTACTAAGT 59.681 38.462 0.00 0.00 0.00 2.24
6234 12532 6.694877 TGATCATAGCAGACGTACTAAGTT 57.305 37.500 0.00 0.00 0.00 2.66
6235 12533 7.096884 TGATCATAGCAGACGTACTAAGTTT 57.903 36.000 0.00 0.00 0.00 2.66
6236 12534 6.972901 TGATCATAGCAGACGTACTAAGTTTG 59.027 38.462 0.00 0.00 0.00 2.93
6237 12535 6.505044 TCATAGCAGACGTACTAAGTTTGA 57.495 37.500 0.00 0.00 0.00 2.69
6238 12536 6.552629 TCATAGCAGACGTACTAAGTTTGAG 58.447 40.000 0.00 0.00 0.00 3.02
6239 12537 3.576648 AGCAGACGTACTAAGTTTGAGC 58.423 45.455 0.00 0.00 0.00 4.26
6241 12539 3.608939 GCAGACGTACTAAGTTTGAGCTC 59.391 47.826 6.82 6.82 0.00 4.09
6242 12540 4.795268 CAGACGTACTAAGTTTGAGCTCA 58.205 43.478 13.74 13.74 0.00 4.26
6243 12541 5.403246 CAGACGTACTAAGTTTGAGCTCAT 58.597 41.667 19.04 4.84 0.00 2.90
6245 12543 6.366332 CAGACGTACTAAGTTTGAGCTCATTT 59.634 38.462 19.04 14.50 0.00 2.32
6246 12544 6.366332 AGACGTACTAAGTTTGAGCTCATTTG 59.634 38.462 19.04 12.33 0.00 2.32
6248 12546 5.163854 CGTACTAAGTTTGAGCTCATTTGGG 60.164 44.000 19.04 9.12 0.00 4.12
6249 12547 3.507622 ACTAAGTTTGAGCTCATTTGGGC 59.492 43.478 19.04 4.58 0.00 5.36
6251 12549 2.532843 AGTTTGAGCTCATTTGGGCAT 58.467 42.857 19.04 0.00 0.00 4.40
6252 12550 2.232941 AGTTTGAGCTCATTTGGGCATG 59.767 45.455 19.04 0.00 0.00 4.06
6254 12552 1.927487 TGAGCTCATTTGGGCATGTT 58.073 45.000 13.74 0.00 0.00 2.71
6255 12553 2.250031 TGAGCTCATTTGGGCATGTTT 58.750 42.857 13.74 0.00 0.00 2.83
6256 12554 3.429492 TGAGCTCATTTGGGCATGTTTA 58.571 40.909 13.74 0.00 0.00 2.01
6257 12555 3.444742 TGAGCTCATTTGGGCATGTTTAG 59.555 43.478 13.74 0.00 0.00 1.85
6258 12556 2.167075 AGCTCATTTGGGCATGTTTAGC 59.833 45.455 5.04 0.00 0.00 3.09
6260 12558 3.514645 CTCATTTGGGCATGTTTAGCAC 58.485 45.455 0.00 0.00 35.50 4.40
6262 12560 3.056678 TCATTTGGGCATGTTTAGCACTG 60.057 43.478 0.00 0.00 36.08 3.66
6264 12562 2.869101 TGGGCATGTTTAGCACTGTA 57.131 45.000 0.00 0.00 36.08 2.74
6267 12565 3.505680 TGGGCATGTTTAGCACTGTAAAG 59.494 43.478 0.00 0.00 36.08 1.85
6268 12566 3.506067 GGGCATGTTTAGCACTGTAAAGT 59.494 43.478 0.00 0.00 31.20 2.66
6269 12567 4.022329 GGGCATGTTTAGCACTGTAAAGTT 60.022 41.667 0.00 0.00 31.20 2.66
6270 12568 4.917415 GGCATGTTTAGCACTGTAAAGTTG 59.083 41.667 0.00 0.00 0.00 3.16
6271 12569 4.382754 GCATGTTTAGCACTGTAAAGTTGC 59.617 41.667 0.00 0.66 30.18 4.17
6272 12570 5.762045 CATGTTTAGCACTGTAAAGTTGCT 58.238 37.500 12.65 12.65 39.36 3.91
6273 12571 5.418310 TGTTTAGCACTGTAAAGTTGCTC 57.582 39.130 11.73 2.18 37.08 4.26
6275 12573 5.355630 TGTTTAGCACTGTAAAGTTGCTCAA 59.644 36.000 11.73 6.63 37.08 3.02
6276 12574 6.127869 TGTTTAGCACTGTAAAGTTGCTCAAA 60.128 34.615 11.73 9.10 37.08 2.69
6277 12575 4.292977 AGCACTGTAAAGTTGCTCAAAC 57.707 40.909 4.67 0.00 39.24 2.93
6290 12588 6.072112 GTTGCTCAAACTAGAAAATGGACA 57.928 37.500 0.00 0.00 35.75 4.02
6291 12589 6.681777 GTTGCTCAAACTAGAAAATGGACAT 58.318 36.000 0.00 0.00 35.75 3.06
6307 12605 5.423704 TGGACATCCATTTTTCATGCATT 57.576 34.783 0.00 0.00 42.01 3.56
6308 12606 5.806818 TGGACATCCATTTTTCATGCATTT 58.193 33.333 0.00 0.00 42.01 2.32
6309 12607 6.944096 TGGACATCCATTTTTCATGCATTTA 58.056 32.000 0.00 0.00 42.01 1.40
6310 12608 7.392418 TGGACATCCATTTTTCATGCATTTAA 58.608 30.769 0.00 0.00 42.01 1.52
6311 12609 8.047911 TGGACATCCATTTTTCATGCATTTAAT 58.952 29.630 0.00 0.00 42.01 1.40
6312 12610 8.339714 GGACATCCATTTTTCATGCATTTAATG 58.660 33.333 0.00 0.00 35.64 1.90
6313 12611 9.100554 GACATCCATTTTTCATGCATTTAATGA 57.899 29.630 9.36 2.86 32.24 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
170 202 6.613536 GCACATTAACTTTTAAGTTTCAGCGC 60.614 38.462 12.62 0.00 46.52 5.92
172 204 6.145534 GGGCACATTAACTTTTAAGTTTCAGC 59.854 38.462 12.62 9.97 46.52 4.26
186 218 0.447801 CTGCACGAGGGCACATTAAC 59.552 55.000 0.00 0.00 39.25 2.01
207 239 3.731089 ACGGTCCGTGAAATAGTTGAAA 58.269 40.909 18.08 0.00 39.18 2.69
243 275 1.048724 CCTGTCAAGCCCTATCCGGA 61.049 60.000 6.61 6.61 33.16 5.14
258 290 3.550431 ACAGAGGCACGCACCTGT 61.550 61.111 0.75 8.98 41.32 4.00
271 319 3.885724 TGCTTGACGGATATTCACAGA 57.114 42.857 0.00 0.00 0.00 3.41
280 328 2.214376 TCCCATTTTGCTTGACGGAT 57.786 45.000 0.00 0.00 0.00 4.18
343 391 2.174639 CCATACTGTGCCCCCTTCAATA 59.825 50.000 0.00 0.00 0.00 1.90
356 404 4.225042 TCAAGGCAACATAGTCCATACTGT 59.775 41.667 0.00 0.00 36.56 3.55
361 409 2.648059 GCTCAAGGCAACATAGTCCAT 58.352 47.619 0.00 0.00 41.35 3.41
366 414 0.729116 CACCGCTCAAGGCAACATAG 59.271 55.000 0.00 0.00 41.91 2.23
411 459 0.037326 TGCACTAGTTTCCTGCCTCG 60.037 55.000 0.00 0.00 0.00 4.63
438 486 0.609662 GCACTCCCAACAATGGCATT 59.390 50.000 6.96 6.96 46.09 3.56
499 547 5.105310 TCACTCCTGAAAGCATACTCCTTAC 60.105 44.000 0.00 0.00 0.00 2.34
514 562 0.033503 TGCCGTATCCTCACTCCTGA 60.034 55.000 0.00 0.00 0.00 3.86
521 569 1.751351 CTCAGTTCTGCCGTATCCTCA 59.249 52.381 0.00 0.00 0.00 3.86
533 581 1.001406 CTCCGTTGCTTCCTCAGTTCT 59.999 52.381 0.00 0.00 0.00 3.01
537 585 1.004560 TGCTCCGTTGCTTCCTCAG 60.005 57.895 0.00 0.00 0.00 3.35
544 592 1.302033 CTGTTCCTGCTCCGTTGCT 60.302 57.895 0.00 0.00 0.00 3.91
547 595 1.302033 CTGCTGTTCCTGCTCCGTT 60.302 57.895 0.00 0.00 0.00 4.44
567 615 1.069022 CACGTCATCCTTTGCCTGTTG 60.069 52.381 0.00 0.00 0.00 3.33
583 631 1.545614 CGCAACTCGCAACTACACGT 61.546 55.000 0.00 0.00 42.60 4.49
593 641 1.492319 TACACCACAACGCAACTCGC 61.492 55.000 0.00 0.00 43.23 5.03
594 642 0.231279 GTACACCACAACGCAACTCG 59.769 55.000 0.00 0.00 45.38 4.18
595 643 1.292061 TGTACACCACAACGCAACTC 58.708 50.000 0.00 0.00 32.95 3.01
596 644 1.601903 CATGTACACCACAACGCAACT 59.398 47.619 0.00 0.00 41.55 3.16
597 645 1.334599 CCATGTACACCACAACGCAAC 60.335 52.381 0.00 0.00 41.55 4.17
598 646 0.947960 CCATGTACACCACAACGCAA 59.052 50.000 0.00 0.00 41.55 4.85
599 647 1.511318 GCCATGTACACCACAACGCA 61.511 55.000 0.00 0.00 41.55 5.24
701 832 0.736053 TTGACCGCTTCACCAACAAC 59.264 50.000 0.00 0.00 32.26 3.32
712 843 0.905357 AGCCTTATCACTTGACCGCT 59.095 50.000 0.00 0.00 0.00 5.52
724 855 5.537674 CCATTTCTTCCTATGCAAGCCTTAT 59.462 40.000 0.00 0.00 0.00 1.73
726 857 3.703052 CCATTTCTTCCTATGCAAGCCTT 59.297 43.478 0.00 0.00 0.00 4.35
833 966 1.956477 AGGCTGCCACAACTTTGTTAG 59.044 47.619 22.65 0.00 39.91 2.34
954 1089 2.058705 TGTATGGTTCCTTGGTGGTGA 58.941 47.619 0.00 0.00 37.07 4.02
997 1132 5.163561 CGCCCACAGTATTGTTATCCATTTT 60.164 40.000 0.00 0.00 34.62 1.82
998 1133 4.338118 CGCCCACAGTATTGTTATCCATTT 59.662 41.667 0.00 0.00 34.62 2.32
1050 1185 2.102357 CATGTCCCCTCGTCGTCG 59.898 66.667 0.00 0.00 38.55 5.12
1378 1516 2.169561 TGAACATAGCATAGGACGCCAA 59.830 45.455 0.00 0.00 0.00 4.52
1384 1522 4.277672 GTCCGTAGTGAACATAGCATAGGA 59.722 45.833 0.00 0.00 0.00 2.94
1389 1527 2.165641 CTGGTCCGTAGTGAACATAGCA 59.834 50.000 0.00 0.00 30.08 3.49
1615 1754 7.305474 CGTAAGCAAATTTTAACATGGTCTCT 58.695 34.615 0.00 0.00 0.00 3.10
1616 1755 6.526674 CCGTAAGCAAATTTTAACATGGTCTC 59.473 38.462 0.00 0.00 0.00 3.36
1617 1756 6.015772 ACCGTAAGCAAATTTTAACATGGTCT 60.016 34.615 0.00 0.00 0.00 3.85
1636 1776 7.596248 GGCGATGTTAGATTCTATAAACCGTAA 59.404 37.037 0.00 0.00 0.00 3.18
1691 1831 1.192146 TTTGTCCGCCTCCTACTGCT 61.192 55.000 0.00 0.00 0.00 4.24
1696 1836 2.975536 CCGTTTGTCCGCCTCCTA 59.024 61.111 0.00 0.00 0.00 2.94
1739 1879 2.589540 CCCAAGTGCTCGCCCATA 59.410 61.111 0.00 0.00 0.00 2.74
1808 1948 0.767375 ACTTGCTGGTCACCATCACT 59.233 50.000 0.00 0.00 28.82 3.41
1844 1984 2.047655 GCCACATCGTCGAACCCA 60.048 61.111 0.00 0.00 0.00 4.51
1949 2089 1.126488 GGGAGATGACATGAGGCAGA 58.874 55.000 0.00 0.00 0.00 4.26
1993 2133 3.569701 GTCAAATTCACAAGAAGGAGGCA 59.430 43.478 0.00 0.00 37.14 4.75
2005 2145 3.807622 TCACGAGACCAAGTCAAATTCAC 59.192 43.478 0.00 0.00 34.60 3.18
2026 2166 4.019591 ACCCAGTAACCTATTCACAAGGTC 60.020 45.833 0.00 0.00 46.85 3.85
2041 2181 7.253905 AGTTTATAGAGAAAGCACCCAGTAA 57.746 36.000 0.00 0.00 0.00 2.24
2047 2187 8.780249 TGTGTAAAAGTTTATAGAGAAAGCACC 58.220 33.333 0.00 0.00 0.00 5.01
2153 2351 2.423892 CGACCATAGTCACTAGCACTGT 59.576 50.000 5.38 0.00 43.73 3.55
2168 2366 0.821517 TGTATCCGAGTTGCGACCAT 59.178 50.000 0.00 0.00 44.57 3.55
2170 2368 0.527817 CCTGTATCCGAGTTGCGACC 60.528 60.000 0.00 0.00 44.57 4.79
2225 2423 2.750141 ATACCGGCTTGAGGAGAGTA 57.250 50.000 0.00 0.00 0.00 2.59
2243 2441 6.294473 CAGAGAGCCCACTATATCACAAAAT 58.706 40.000 0.00 0.00 0.00 1.82
2276 2474 4.057428 GTGCGCCTCGGACACTCT 62.057 66.667 4.18 0.00 46.80 3.24
2303 2501 2.613691 GGTCCATCAACATACGTTCGT 58.386 47.619 0.00 2.91 31.13 3.85
2315 2513 3.083349 CCAGCTCCCGGTCCATCA 61.083 66.667 0.00 0.00 0.00 3.07
2345 2543 0.868406 CGGCTCTGAAACCACTTGTC 59.132 55.000 0.00 0.00 0.00 3.18
2375 2988 0.188342 ACACCCCAAAAGACTGGCAT 59.812 50.000 0.00 0.00 34.88 4.40
2376 2989 0.847373 TACACCCCAAAAGACTGGCA 59.153 50.000 0.00 0.00 34.88 4.92
2400 3014 7.123397 TCAGACAATCAACTACTAGCAGAGAAT 59.877 37.037 0.00 0.00 0.00 2.40
2419 3033 1.028130 TTTTGGTGCGCATCAGACAA 58.972 45.000 24.37 12.97 0.00 3.18
2454 3068 1.000359 TCAGCTCCCAGTCCATCGA 60.000 57.895 0.00 0.00 0.00 3.59
2499 3113 3.479203 TATCGTGGGGGCCAGCTG 61.479 66.667 6.78 6.78 32.34 4.24
2526 3187 2.681344 GGTGGGACTAAAGTTAATGGCG 59.319 50.000 0.00 0.00 0.00 5.69
2531 3192 6.127535 CGTATCTGAGGTGGGACTAAAGTTAA 60.128 42.308 0.00 0.00 0.00 2.01
2557 3218 1.075600 GGAGGTCCTAGCCTGCTCT 60.076 63.158 0.00 0.00 42.73 4.09
2578 3239 0.889306 AGCGTGACACTCTCCCTTAC 59.111 55.000 3.68 0.00 0.00 2.34
2603 3264 1.339929 ACATTTCAAAACACCGGCCTC 59.660 47.619 0.00 0.00 0.00 4.70
2618 3279 5.445964 ACAAACAGAGAACCCACTACATTT 58.554 37.500 0.00 0.00 0.00 2.32
2630 3291 5.926542 CGAAGAATCCACTACAAACAGAGAA 59.073 40.000 0.00 0.00 0.00 2.87
2637 3298 4.391830 GTGCATCGAAGAATCCACTACAAA 59.608 41.667 0.00 0.00 43.58 2.83
2652 3313 1.518325 ACATTTTCGGTGTGCATCGA 58.482 45.000 3.18 3.18 42.89 3.59
2685 3346 0.321653 GGACCAGCTCGTGTTCCATT 60.322 55.000 0.00 0.00 0.00 3.16
2725 3386 7.591821 AGGAAAATAGGAGAGTGAGAGATAGT 58.408 38.462 0.00 0.00 0.00 2.12
2759 3420 3.873952 CCTAGAACTGGCACATAAAGCTC 59.126 47.826 0.00 0.00 38.20 4.09
2767 3428 1.055849 TGCTTCCTAGAACTGGCACA 58.944 50.000 0.00 0.00 0.00 4.57
2772 3433 5.125100 TGCAAAAATGCTTCCTAGAACTG 57.875 39.130 2.22 0.00 35.49 3.16
2827 3498 9.959749 GTATGGTTGAAACTGAAACAAGAAATA 57.040 29.630 0.00 0.00 0.00 1.40
2828 3499 8.695456 AGTATGGTTGAAACTGAAACAAGAAAT 58.305 29.630 0.00 0.00 0.00 2.17
2846 3522 8.214364 AGAGAAACAGAAAGAAAGAGTATGGTT 58.786 33.333 0.00 0.00 0.00 3.67
2847 3523 7.740805 AGAGAAACAGAAAGAAAGAGTATGGT 58.259 34.615 0.00 0.00 0.00 3.55
2873 3549 2.373502 GGGGAATCCATCTGGTTAGGAG 59.626 54.545 0.09 0.00 34.40 3.69
2951 3627 0.817634 CTTCCGGTGCACTTTGTGGA 60.818 55.000 17.98 13.11 33.64 4.02
2966 3642 6.106003 ACAGACATTTTTGGTTTTGTCTTCC 58.894 36.000 1.87 0.00 44.77 3.46
3000 3676 6.945636 TTATAACCCAGGGTAGGTGATATG 57.054 41.667 13.17 0.00 37.78 1.78
3041 3717 4.142816 CCAAATGAAGCTTAGGTGAACTCG 60.143 45.833 0.00 0.00 0.00 4.18
3190 3867 7.338957 ACAATCTCCTCCAATTTTGAGAAGATC 59.661 37.037 4.54 0.00 37.41 2.75
3193 3870 6.208204 ACACAATCTCCTCCAATTTTGAGAAG 59.792 38.462 3.77 0.00 37.41 2.85
3283 3964 8.497745 GTCCCATGGAGGATGTTATATATGATT 58.502 37.037 15.22 0.00 41.22 2.57
3328 4009 5.739161 CGCTAGTCAAATTGAATGCCTAAAC 59.261 40.000 6.17 0.00 0.00 2.01
3372 4054 6.663944 ATGGAAGTGCGAAACTAGTAATTC 57.336 37.500 0.00 0.00 38.56 2.17
3392 4074 6.771076 TGTTTTTAGATTCATCGACGAATGG 58.229 36.000 12.04 0.00 35.74 3.16
3436 4118 8.412456 TCAATTTGAGTGACAATACATGTGTTT 58.588 29.630 9.11 0.00 44.12 2.83
3446 4128 8.463930 TTTAGGTCTTCAATTTGAGTGACAAT 57.536 30.769 23.50 17.55 38.36 2.71
3448 4130 7.201785 GGTTTTAGGTCTTCAATTTGAGTGACA 60.202 37.037 23.50 10.90 35.16 3.58
3475 4157 2.042297 TGGGAACATAAGTTGGGCATGA 59.958 45.455 0.00 0.00 38.30 3.07
3560 4242 7.596494 ACAATGAAGTGGTAGAATGTTCAATG 58.404 34.615 0.00 0.00 35.22 2.82
3659 4341 0.250513 GATGCCTGGAACGGAGACTT 59.749 55.000 0.00 0.00 36.31 3.01
3667 4349 2.353357 TGGATGATGATGCCTGGAAC 57.647 50.000 0.00 0.00 0.00 3.62
3751 4433 6.804770 TGTGTATACGCTAACAACCAAAAT 57.195 33.333 16.94 0.00 0.00 1.82
3842 4526 9.685828 CACTTGATCTATAGGCTTTAGTACTTC 57.314 37.037 0.00 6.15 0.00 3.01
3866 4550 4.991056 AGTACACACATGTCTGTTGATCAC 59.009 41.667 12.18 4.26 40.48 3.06
3876 4560 2.349817 GCACAGCAAGTACACACATGTC 60.350 50.000 0.00 0.00 40.48 3.06
3908 4592 3.640029 TCCTACTGAGTTGAAAGTTCCGT 59.360 43.478 0.00 0.00 0.00 4.69
3934 4618 1.808411 TGAACCGAGGAAACTGATGC 58.192 50.000 0.00 0.00 44.43 3.91
3948 4632 9.847224 TCCTAGTAGAAATTAATCCATTGAACC 57.153 33.333 0.00 0.00 0.00 3.62
4046 4732 1.899814 AGTCGAGTGATGGGTGCTAAA 59.100 47.619 0.00 0.00 0.00 1.85
4047 4733 1.476891 GAGTCGAGTGATGGGTGCTAA 59.523 52.381 0.00 0.00 0.00 3.09
4048 4734 1.103803 GAGTCGAGTGATGGGTGCTA 58.896 55.000 0.00 0.00 0.00 3.49
4050 4736 0.247736 AAGAGTCGAGTGATGGGTGC 59.752 55.000 0.00 0.00 0.00 5.01
4063 4750 7.411912 GCAAAAACAAGGAAAGACAAAAGAGTC 60.412 37.037 0.00 0.00 38.81 3.36
4406 7382 7.807977 TTTCTATTTGAGATAATGAGGGTGC 57.192 36.000 0.00 0.00 32.88 5.01
4488 7466 4.211374 ACGCATTGTTTGTCAGAAGTAGAC 59.789 41.667 0.00 0.00 36.55 2.59
4495 7473 2.033236 GTCGAACGCATTGTTTGTCAGA 60.033 45.455 0.00 0.00 42.09 3.27
4567 9531 0.901580 AGCCACCTTGATTGCTTGGG 60.902 55.000 0.00 0.00 0.00 4.12
4607 9571 3.250617 ACTAAGAGAAAACCCGGGGTTA 58.749 45.455 30.85 13.09 46.20 2.85
4614 9578 7.553402 GGAGGAAATCTTACTAAGAGAAAACCC 59.447 40.741 4.82 0.00 41.61 4.11
4627 9591 5.272283 TCGTACCATGGAGGAAATCTTAC 57.728 43.478 21.47 6.02 41.22 2.34
4636 9600 0.032130 CCGACATCGTACCATGGAGG 59.968 60.000 21.47 8.10 39.83 4.30
4641 9605 1.134367 CACTGTCCGACATCGTACCAT 59.866 52.381 0.62 0.00 37.74 3.55
4642 9606 0.524414 CACTGTCCGACATCGTACCA 59.476 55.000 0.62 0.00 37.74 3.25
4646 9610 2.261671 GGCACTGTCCGACATCGT 59.738 61.111 0.62 0.00 37.74 3.73
4682 9646 0.106708 GAGTGTGGTTGTCCAGCAGA 59.893 55.000 0.00 0.00 45.24 4.26
4687 9651 3.837731 TGATATGAGAGTGTGGTTGTCCA 59.162 43.478 0.00 0.00 42.05 4.02
4721 9686 1.002659 TCGACGTCCAATTTCCATGGT 59.997 47.619 12.58 0.00 39.09 3.55
4728 9693 5.538118 TGCTATATGATCGACGTCCAATTT 58.462 37.500 10.58 0.00 0.00 1.82
4731 9696 4.577834 TTGCTATATGATCGACGTCCAA 57.422 40.909 10.58 1.19 0.00 3.53
4734 9703 7.105494 TGAATTTTGCTATATGATCGACGTC 57.895 36.000 5.18 5.18 0.00 4.34
4737 9706 7.587757 GGTGTTGAATTTTGCTATATGATCGAC 59.412 37.037 0.00 0.00 0.00 4.20
4765 9734 4.370049 CAGTGTTGCATTGTTGAATTGGA 58.630 39.130 0.00 0.00 0.00 3.53
4766 9735 4.718858 CAGTGTTGCATTGTTGAATTGG 57.281 40.909 0.00 0.00 0.00 3.16
4868 9837 7.721286 TTGTTTGTCACAAAGAAAACATTGT 57.279 28.000 10.30 0.00 42.76 2.71
4879 9848 8.635713 AACGGAATGTTGTTTGTTTGTCACAAA 61.636 33.333 0.00 0.00 44.97 2.83
4902 9871 6.687081 TTAGGGGATTTATTTAGCACAACG 57.313 37.500 0.00 0.00 0.00 4.10
4939 9908 6.349115 CGAAGTGTAGGTTTAAGTCTGCTCTA 60.349 42.308 0.00 0.00 0.00 2.43
5017 9986 5.163591 TGGAGTACCGTCTGTATGTACATTG 60.164 44.000 14.77 5.35 37.82 2.82
5048 10017 7.555195 AGAATCTTTATGCAGTCATTGTCATCA 59.445 33.333 0.00 0.00 34.22 3.07
5086 10055 2.291741 CCCTTGTCTGACAAAGCTTGAC 59.708 50.000 22.25 3.07 37.69 3.18
5151 10120 1.189752 TTTTGTGCTGCCCTTGTCAA 58.810 45.000 0.00 0.00 0.00 3.18
5222 10191 4.517285 TCAGAAACTCTTGTGCAGTTCTT 58.483 39.130 0.00 0.00 32.71 2.52
5231 10200 3.567478 ACCAGCTTCAGAAACTCTTGT 57.433 42.857 0.00 0.00 0.00 3.16
5251 10220 2.355716 CCGCTGAAACCTGATTCCCTAA 60.356 50.000 0.00 0.00 0.00 2.69
5357 10326 8.011844 TCTCACACACATTATCAATAGTAGCT 57.988 34.615 0.00 0.00 0.00 3.32
5546 10521 7.978975 GGCAATACAAAAATACAGCTGGAATAA 59.021 33.333 19.93 0.00 0.00 1.40
5830 10855 4.213270 GCATGCTTGTGTTAGTGTTGACTA 59.787 41.667 11.37 0.00 33.21 2.59
5965 11536 7.229306 GGGCATGATCTCTTTCATTAACACATA 59.771 37.037 0.00 0.00 34.09 2.29
5970 11541 6.645790 ATGGGCATGATCTCTTTCATTAAC 57.354 37.500 0.00 0.00 34.09 2.01
5971 11542 7.664552 AAATGGGCATGATCTCTTTCATTAA 57.335 32.000 0.00 0.00 34.09 1.40
5973 11544 6.555463 AAAATGGGCATGATCTCTTTCATT 57.445 33.333 0.00 0.00 34.09 2.57
5974 11545 6.555463 AAAAATGGGCATGATCTCTTTCAT 57.445 33.333 0.00 0.00 36.79 2.57
6015 11586 9.763465 GCGTGTATGCTACTATTTAAAAGAAAA 57.237 29.630 0.00 0.00 0.00 2.29
6016 11587 8.392612 GGCGTGTATGCTACTATTTAAAAGAAA 58.607 33.333 0.00 0.00 34.52 2.52
6017 11588 7.767198 AGGCGTGTATGCTACTATTTAAAAGAA 59.233 33.333 0.00 0.00 34.52 2.52
6018 11589 7.270047 AGGCGTGTATGCTACTATTTAAAAGA 58.730 34.615 0.00 0.00 34.52 2.52
6019 11590 7.478520 AGGCGTGTATGCTACTATTTAAAAG 57.521 36.000 0.00 0.00 34.52 2.27
6020 11591 8.199449 ACTAGGCGTGTATGCTACTATTTAAAA 58.801 33.333 0.00 0.00 34.52 1.52
6021 11592 7.719483 ACTAGGCGTGTATGCTACTATTTAAA 58.281 34.615 0.00 0.00 34.52 1.52
6022 11593 7.281040 ACTAGGCGTGTATGCTACTATTTAA 57.719 36.000 0.00 0.00 34.52 1.52
6023 11594 6.889301 ACTAGGCGTGTATGCTACTATTTA 57.111 37.500 0.00 0.00 34.52 1.40
6024 11595 5.786264 ACTAGGCGTGTATGCTACTATTT 57.214 39.130 0.00 0.00 34.52 1.40
6028 11599 4.081862 TGAAAACTAGGCGTGTATGCTACT 60.082 41.667 0.00 0.00 34.52 2.57
6029 11600 4.178540 TGAAAACTAGGCGTGTATGCTAC 58.821 43.478 0.00 0.00 34.52 3.58
6030 11601 4.459390 TGAAAACTAGGCGTGTATGCTA 57.541 40.909 0.00 0.00 34.52 3.49
6031 11602 3.328382 TGAAAACTAGGCGTGTATGCT 57.672 42.857 0.00 0.00 34.52 3.79
6033 11604 7.303634 ACTAAATGAAAACTAGGCGTGTATG 57.696 36.000 0.00 0.00 0.00 2.39
6035 11606 7.156673 AGAACTAAATGAAAACTAGGCGTGTA 58.843 34.615 0.00 0.00 0.00 2.90
6036 11607 5.995897 AGAACTAAATGAAAACTAGGCGTGT 59.004 36.000 0.00 0.00 0.00 4.49
6037 11608 6.481954 AGAACTAAATGAAAACTAGGCGTG 57.518 37.500 0.00 0.00 0.00 5.34
6038 11609 7.506328 AAAGAACTAAATGAAAACTAGGCGT 57.494 32.000 0.00 0.00 0.00 5.68
6039 11610 8.797266 AAAAAGAACTAAATGAAAACTAGGCG 57.203 30.769 0.00 0.00 0.00 5.52
6155 12453 9.166173 AGCAAAAAGAATCAACTAAAAAGCTTT 57.834 25.926 5.69 5.69 0.00 3.51
6156 12454 8.722480 AGCAAAAAGAATCAACTAAAAAGCTT 57.278 26.923 0.00 0.00 0.00 3.74
6197 12495 9.066892 TCTGCTATGATCAACTAAAACAAAACT 57.933 29.630 0.00 0.00 0.00 2.66
6198 12496 9.118236 GTCTGCTATGATCAACTAAAACAAAAC 57.882 33.333 0.00 0.00 0.00 2.43
6199 12497 8.015087 CGTCTGCTATGATCAACTAAAACAAAA 58.985 33.333 0.00 0.00 0.00 2.44
6201 12499 6.649141 ACGTCTGCTATGATCAACTAAAACAA 59.351 34.615 0.00 0.00 0.00 2.83
6202 12500 6.163476 ACGTCTGCTATGATCAACTAAAACA 58.837 36.000 0.00 0.00 0.00 2.83
6203 12501 6.648725 ACGTCTGCTATGATCAACTAAAAC 57.351 37.500 0.00 0.00 0.00 2.43
6204 12502 7.544622 AGTACGTCTGCTATGATCAACTAAAA 58.455 34.615 0.00 0.00 0.00 1.52
6205 12503 7.096884 AGTACGTCTGCTATGATCAACTAAA 57.903 36.000 0.00 0.00 0.00 1.85
6208 12506 6.319152 ACTTAGTACGTCTGCTATGATCAACT 59.681 38.462 0.00 0.00 0.00 3.16
6209 12507 6.496571 ACTTAGTACGTCTGCTATGATCAAC 58.503 40.000 0.00 0.00 0.00 3.18
6212 12510 7.194278 TCAAACTTAGTACGTCTGCTATGATC 58.806 38.462 0.00 0.00 0.00 2.92
6214 12512 6.505044 TCAAACTTAGTACGTCTGCTATGA 57.495 37.500 0.00 0.00 0.00 2.15
6215 12513 5.230306 GCTCAAACTTAGTACGTCTGCTATG 59.770 44.000 0.00 0.00 0.00 2.23
6216 12514 5.125739 AGCTCAAACTTAGTACGTCTGCTAT 59.874 40.000 0.00 0.00 0.00 2.97
6219 12517 3.576648 AGCTCAAACTTAGTACGTCTGC 58.423 45.455 0.00 0.00 0.00 4.26
6220 12518 4.795268 TGAGCTCAAACTTAGTACGTCTG 58.205 43.478 15.67 0.00 0.00 3.51
6221 12519 5.646577 ATGAGCTCAAACTTAGTACGTCT 57.353 39.130 22.50 0.00 0.00 4.18
6222 12520 6.401153 CCAAATGAGCTCAAACTTAGTACGTC 60.401 42.308 22.50 0.00 0.00 4.34
6223 12521 5.408604 CCAAATGAGCTCAAACTTAGTACGT 59.591 40.000 22.50 0.00 0.00 3.57
6224 12522 5.163854 CCCAAATGAGCTCAAACTTAGTACG 60.164 44.000 22.50 2.74 0.00 3.67
6225 12523 5.392057 GCCCAAATGAGCTCAAACTTAGTAC 60.392 44.000 22.50 1.43 0.00 2.73
6226 12524 4.700213 GCCCAAATGAGCTCAAACTTAGTA 59.300 41.667 22.50 0.00 0.00 1.82
6228 12526 3.507233 TGCCCAAATGAGCTCAAACTTAG 59.493 43.478 22.50 9.41 0.00 2.18
6229 12527 3.495331 TGCCCAAATGAGCTCAAACTTA 58.505 40.909 22.50 1.41 0.00 2.24
6230 12528 2.318908 TGCCCAAATGAGCTCAAACTT 58.681 42.857 22.50 11.65 0.00 2.66
6231 12529 1.999648 TGCCCAAATGAGCTCAAACT 58.000 45.000 22.50 5.45 0.00 2.66
6232 12530 2.028748 ACATGCCCAAATGAGCTCAAAC 60.029 45.455 22.50 7.23 0.00 2.93
6233 12531 2.250031 ACATGCCCAAATGAGCTCAAA 58.750 42.857 22.50 0.00 0.00 2.69
6234 12532 1.927487 ACATGCCCAAATGAGCTCAA 58.073 45.000 22.50 1.84 0.00 3.02
6235 12533 1.927487 AACATGCCCAAATGAGCTCA 58.073 45.000 20.79 20.79 0.00 4.26
6236 12534 3.736126 GCTAAACATGCCCAAATGAGCTC 60.736 47.826 6.82 6.82 0.00 4.09
6237 12535 2.167075 GCTAAACATGCCCAAATGAGCT 59.833 45.455 0.00 0.00 0.00 4.09
6238 12536 2.094078 TGCTAAACATGCCCAAATGAGC 60.094 45.455 0.00 0.00 0.00 4.26
6239 12537 3.194116 AGTGCTAAACATGCCCAAATGAG 59.806 43.478 0.00 0.00 0.00 2.90
6241 12539 3.255725 CAGTGCTAAACATGCCCAAATG 58.744 45.455 0.00 0.00 0.00 2.32
6242 12540 2.899256 ACAGTGCTAAACATGCCCAAAT 59.101 40.909 0.00 0.00 0.00 2.32
6243 12541 2.315176 ACAGTGCTAAACATGCCCAAA 58.685 42.857 0.00 0.00 0.00 3.28
6245 12543 2.869101 TACAGTGCTAAACATGCCCA 57.131 45.000 0.00 0.00 0.00 5.36
6246 12544 3.506067 ACTTTACAGTGCTAAACATGCCC 59.494 43.478 0.00 0.00 0.00 5.36
6248 12546 4.382754 GCAACTTTACAGTGCTAAACATGC 59.617 41.667 0.00 3.26 31.60 4.06
6249 12547 5.762045 AGCAACTTTACAGTGCTAAACATG 58.238 37.500 0.00 0.00 36.32 3.21
6251 12549 4.878971 TGAGCAACTTTACAGTGCTAAACA 59.121 37.500 0.00 0.00 37.45 2.83
6252 12550 5.418310 TGAGCAACTTTACAGTGCTAAAC 57.582 39.130 0.00 0.00 37.45 2.01
6254 12552 5.588648 AGTTTGAGCAACTTTACAGTGCTAA 59.411 36.000 0.00 0.00 43.89 3.09
6255 12553 5.123227 AGTTTGAGCAACTTTACAGTGCTA 58.877 37.500 0.00 0.00 43.89 3.49
6256 12554 3.947834 AGTTTGAGCAACTTTACAGTGCT 59.052 39.130 0.00 0.00 43.89 4.40
6257 12555 4.292977 AGTTTGAGCAACTTTACAGTGC 57.707 40.909 0.00 0.00 43.89 4.40
6258 12556 6.844696 TCTAGTTTGAGCAACTTTACAGTG 57.155 37.500 0.00 0.00 43.89 3.66
6260 12558 9.173939 CATTTTCTAGTTTGAGCAACTTTACAG 57.826 33.333 0.00 0.00 43.89 2.74
6262 12560 8.349983 TCCATTTTCTAGTTTGAGCAACTTTAC 58.650 33.333 0.00 0.00 43.89 2.01
6264 12562 7.147915 TGTCCATTTTCTAGTTTGAGCAACTTT 60.148 33.333 0.00 0.00 43.89 2.66
6267 12565 6.072112 TGTCCATTTTCTAGTTTGAGCAAC 57.928 37.500 0.00 0.00 35.32 4.17
6268 12566 6.071952 GGATGTCCATTTTCTAGTTTGAGCAA 60.072 38.462 0.00 0.00 35.64 3.91
6269 12567 5.415701 GGATGTCCATTTTCTAGTTTGAGCA 59.584 40.000 0.00 0.00 35.64 4.26
6270 12568 5.415701 TGGATGTCCATTTTCTAGTTTGAGC 59.584 40.000 0.00 0.00 42.01 4.26
6286 12584 7.846644 TTAAATGCATGAAAAATGGATGTCC 57.153 32.000 0.00 0.00 30.44 4.02
6287 12585 9.100554 TCATTAAATGCATGAAAAATGGATGTC 57.899 29.630 16.90 0.00 30.44 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.