Multiple sequence alignment - TraesCS1A01G031400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G031400 chr1A 100.000 4540 0 0 1 4540 14529380 14524841 0.000000e+00 8384.0
1 TraesCS1A01G031400 chr1A 92.090 354 13 7 3383 3721 13765077 13764724 6.830000e-133 484.0
2 TraesCS1A01G031400 chr1B 98.545 4398 35 15 1 4374 154147340 154151732 0.000000e+00 7740.0
3 TraesCS1A01G031400 chr1B 92.636 937 54 8 5 931 55536583 55535652 0.000000e+00 1334.0
4 TraesCS1A01G031400 chr1B 79.412 136 22 6 4385 4517 635116595 635116727 1.740000e-14 91.6
5 TraesCS1A01G031400 chr2A 98.407 4395 42 14 1 4371 195112236 195116626 0.000000e+00 7703.0
6 TraesCS1A01G031400 chr2A 98.060 2835 49 5 1182 4013 721735602 721738433 0.000000e+00 4926.0
7 TraesCS1A01G031400 chr2A 98.589 1134 14 2 1 1133 721734352 721735484 0.000000e+00 2004.0
8 TraesCS1A01G031400 chr2A 95.148 371 16 2 4001 4371 721738447 721738815 6.540000e-163 584.0
9 TraesCS1A01G031400 chr2A 91.736 242 18 2 4132 4373 281670729 281670968 7.280000e-88 335.0
10 TraesCS1A01G031400 chr2A 91.736 242 18 2 4132 4373 281673688 281673927 7.280000e-88 335.0
11 TraesCS1A01G031400 chr2A 92.208 77 0 2 1129 1205 721735501 721735571 2.230000e-18 104.0
12 TraesCS1A01G031400 chr7A 96.449 4421 69 19 1 4371 678172323 678167941 0.000000e+00 7214.0
13 TraesCS1A01G031400 chr4D 96.809 1849 34 10 923 2746 40832554 40834402 0.000000e+00 3064.0
14 TraesCS1A01G031400 chr4D 95.230 1216 35 3 2746 3939 40834372 40835586 0.000000e+00 1903.0
15 TraesCS1A01G031400 chr4D 90.551 254 20 4 4118 4371 100763302 100763053 2.620000e-87 333.0
16 TraesCS1A01G031400 chr4D 86.916 214 11 6 3906 4102 40835583 40835796 1.640000e-54 224.0
17 TraesCS1A01G031400 chr7D 96.755 1849 35 7 923 2746 509912572 509910724 0.000000e+00 3059.0
18 TraesCS1A01G031400 chr7D 95.312 1216 34 3 2746 3939 509910754 509909540 0.000000e+00 1908.0
19 TraesCS1A01G031400 chr7D 98.496 931 13 1 1 931 509914521 509913592 0.000000e+00 1640.0
20 TraesCS1A01G031400 chr7D 88.462 208 22 2 3733 3939 162188507 162188713 2.710000e-62 250.0
21 TraesCS1A01G031400 chr7D 85.202 223 7 1 3906 4102 509909543 509909321 5.950000e-49 206.0
22 TraesCS1A01G031400 chr7D 96.639 119 4 0 3999 4117 501018942 501018824 9.960000e-47 198.0
23 TraesCS1A01G031400 chr7D 95.181 83 4 0 3923 4005 501019044 501018962 1.020000e-26 132.0
24 TraesCS1A01G031400 chr5D 96.647 1849 37 7 923 2746 254531932 254530084 0.000000e+00 3048.0
25 TraesCS1A01G031400 chr5D 96.539 1849 40 7 923 2747 551018687 551016839 0.000000e+00 3038.0
26 TraesCS1A01G031400 chr5D 94.477 1213 37 5 2746 3935 551016871 551015666 0.000000e+00 1842.0
27 TraesCS1A01G031400 chr5D 93.361 1205 33 4 2746 3927 254530114 254528934 0.000000e+00 1738.0
28 TraesCS1A01G031400 chr5D 98.174 931 12 3 1 931 551020632 551019707 0.000000e+00 1620.0
29 TraesCS1A01G031400 chr5D 98.494 863 11 2 70 931 254533815 254532954 0.000000e+00 1520.0
30 TraesCS1A01G031400 chr5D 96.721 122 4 0 3999 4120 551015496 551015375 2.140000e-48 204.0
31 TraesCS1A01G031400 chr5D 97.196 107 3 0 3907 4013 551015666 551015560 1.000000e-41 182.0
32 TraesCS1A01G031400 chr5D 97.115 104 3 0 3999 4102 254528755 254528652 4.670000e-40 176.0
33 TraesCS1A01G031400 chr5D 94.444 108 6 0 3906 4013 254528926 254528819 2.810000e-37 167.0
34 TraesCS1A01G031400 chr4A 91.056 928 72 8 5 931 409027337 409026420 0.000000e+00 1243.0
35 TraesCS1A01G031400 chr4A 91.765 255 19 2 4117 4371 558667674 558667422 2.010000e-93 353.0
36 TraesCS1A01G031400 chr4A 87.143 70 8 1 4386 4454 646267758 646267689 1.350000e-10 78.7
37 TraesCS1A01G031400 chr6D 96.613 561 19 0 1711 2271 39581154 39580594 0.000000e+00 931.0
38 TraesCS1A01G031400 chr6D 96.421 447 15 1 2746 3191 39577764 39577318 0.000000e+00 736.0
39 TraesCS1A01G031400 chr6D 94.925 335 13 2 2264 2594 39578443 39578109 5.200000e-144 521.0
40 TraesCS1A01G031400 chr6D 97.333 150 4 0 2597 2746 39577883 39577734 5.830000e-64 255.0
41 TraesCS1A01G031400 chrUn 98.778 409 5 0 1290 1698 477629050 477629458 0.000000e+00 728.0
42 TraesCS1A01G031400 chr1D 92.593 351 11 4 3386 3721 11620623 11620273 1.470000e-134 490.0
43 TraesCS1A01G031400 chr5A 91.406 256 20 2 4117 4372 487695344 487695091 2.600000e-92 350.0
44 TraesCS1A01G031400 chr6A 90.157 254 23 1 4117 4370 530596646 530596897 3.390000e-86 329.0
45 TraesCS1A01G031400 chr3A 88.806 134 8 2 3999 4125 329532563 329532430 1.690000e-34 158.0
46 TraesCS1A01G031400 chr3A 98.462 65 1 0 924 988 365952809 365952745 1.030000e-21 115.0
47 TraesCS1A01G031400 chr7B 78.616 159 31 3 4379 4536 727673555 727673399 8.040000e-18 102.0
48 TraesCS1A01G031400 chr3B 77.333 150 32 2 4386 4534 456977689 456977837 2.250000e-13 87.9
49 TraesCS1A01G031400 chr3B 90.164 61 6 0 4386 4446 51952408 51952468 3.760000e-11 80.5
50 TraesCS1A01G031400 chr4B 88.889 72 4 4 4385 4454 629747924 629747993 8.090000e-13 86.1
51 TraesCS1A01G031400 chr5B 91.525 59 3 2 4388 4445 15681692 15681749 3.760000e-11 80.5
52 TraesCS1A01G031400 chr5B 82.927 82 8 5 4384 4462 54142236 54142158 8.150000e-08 69.4
53 TraesCS1A01G031400 chr2D 85.000 80 6 6 4386 4462 577074715 577074639 4.870000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G031400 chr1A 14524841 14529380 4539 True 8384.000000 8384 100.00000 1 4540 1 chr1A.!!$R2 4539
1 TraesCS1A01G031400 chr1B 154147340 154151732 4392 False 7740.000000 7740 98.54500 1 4374 1 chr1B.!!$F1 4373
2 TraesCS1A01G031400 chr1B 55535652 55536583 931 True 1334.000000 1334 92.63600 5 931 1 chr1B.!!$R1 926
3 TraesCS1A01G031400 chr2A 195112236 195116626 4390 False 7703.000000 7703 98.40700 1 4371 1 chr2A.!!$F1 4370
4 TraesCS1A01G031400 chr2A 721734352 721738815 4463 False 1904.500000 4926 96.00125 1 4371 4 chr2A.!!$F3 4370
5 TraesCS1A01G031400 chr2A 281670729 281673927 3198 False 335.000000 335 91.73600 4132 4373 2 chr2A.!!$F2 241
6 TraesCS1A01G031400 chr7A 678167941 678172323 4382 True 7214.000000 7214 96.44900 1 4371 1 chr7A.!!$R1 4370
7 TraesCS1A01G031400 chr4D 40832554 40835796 3242 False 1730.333333 3064 92.98500 923 4102 3 chr4D.!!$F1 3179
8 TraesCS1A01G031400 chr7D 509909321 509914521 5200 True 1703.250000 3059 93.94125 1 4102 4 chr7D.!!$R2 4101
9 TraesCS1A01G031400 chr5D 551015375 551020632 5257 True 1377.200000 3038 96.62140 1 4120 5 chr5D.!!$R2 4119
10 TraesCS1A01G031400 chr5D 254528652 254533815 5163 True 1329.800000 3048 96.01220 70 4102 5 chr5D.!!$R1 4032
11 TraesCS1A01G031400 chr4A 409026420 409027337 917 True 1243.000000 1243 91.05600 5 931 1 chr4A.!!$R1 926
12 TraesCS1A01G031400 chr6D 39577318 39581154 3836 True 610.750000 931 96.32300 1711 3191 4 chr6D.!!$R1 1480

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
673 683 1.804151 GCATGTCACTGCGTCCTTAAA 59.196 47.619 0.00 0.0 31.49 1.52 F
1101 2142 2.351455 TCGTATGAAAGGCGCATCAAA 58.649 42.857 10.83 0.0 0.00 2.69 F
1398 2509 3.689347 AGTATGCAGGCAACATTCTCAA 58.311 40.909 0.00 0.0 41.41 3.02 F
1794 2906 6.320418 TGATAATTAGTAAGACTGACGCTCCA 59.680 38.462 0.00 0.0 0.00 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1794 2906 4.956075 ACCTCATCCAATCGGCTTTAATTT 59.044 37.500 0.00 0.00 0.00 1.82 R
1978 3090 6.598064 ACATAAGATTAGTTTGTCCCCTTTCG 59.402 38.462 0.00 0.00 0.00 3.46 R
3285 6838 0.679321 GCTGCCCAGGAAGAAGGAAG 60.679 60.000 0.00 0.00 0.00 3.46 R
4207 10847 2.126228 CCATGCACGTACGACCGT 60.126 61.111 24.41 10.39 42.87 4.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
673 683 1.804151 GCATGTCACTGCGTCCTTAAA 59.196 47.619 0.00 0.00 31.49 1.52
1101 2142 2.351455 TCGTATGAAAGGCGCATCAAA 58.649 42.857 10.83 0.00 0.00 2.69
1398 2509 3.689347 AGTATGCAGGCAACATTCTCAA 58.311 40.909 0.00 0.00 41.41 3.02
1794 2906 6.320418 TGATAATTAGTAAGACTGACGCTCCA 59.680 38.462 0.00 0.00 0.00 3.86
3285 6838 0.976641 TGTCATGTCTGGACTGACCC 59.023 55.000 19.82 0.00 38.01 4.46
4064 7745 2.444706 TAGCGCCTGGGATCTGCT 60.445 61.111 2.29 0.00 39.59 4.24
4228 10868 2.098233 GTCGTACGTGCATGGGTGG 61.098 63.158 16.05 0.00 0.00 4.61
4377 11017 7.979786 TCCATTAGGAGTAGAGATTGTCTTT 57.020 36.000 0.00 0.00 39.61 2.52
4378 11018 8.012957 TCCATTAGGAGTAGAGATTGTCTTTC 57.987 38.462 0.00 0.00 39.61 2.62
4379 11019 7.841729 TCCATTAGGAGTAGAGATTGTCTTTCT 59.158 37.037 0.00 0.00 39.61 2.52
4380 11020 7.925483 CCATTAGGAGTAGAGATTGTCTTTCTG 59.075 40.741 0.00 0.00 34.98 3.02
4381 11021 8.690884 CATTAGGAGTAGAGATTGTCTTTCTGA 58.309 37.037 0.00 0.00 36.64 3.27
4382 11022 6.524101 AGGAGTAGAGATTGTCTTTCTGAC 57.476 41.667 0.00 0.00 45.54 3.51
4383 11023 6.252995 AGGAGTAGAGATTGTCTTTCTGACT 58.747 40.000 0.00 0.00 45.54 3.41
4384 11024 6.152661 AGGAGTAGAGATTGTCTTTCTGACTG 59.847 42.308 0.00 0.00 45.54 3.51
4385 11025 6.071616 GGAGTAGAGATTGTCTTTCTGACTGT 60.072 42.308 0.00 0.00 45.54 3.55
4386 11026 7.296628 AGTAGAGATTGTCTTTCTGACTGTT 57.703 36.000 0.00 0.00 45.54 3.16
4387 11027 8.410673 AGTAGAGATTGTCTTTCTGACTGTTA 57.589 34.615 0.00 0.00 45.54 2.41
4388 11028 8.519526 AGTAGAGATTGTCTTTCTGACTGTTAG 58.480 37.037 0.00 0.00 45.54 2.34
4389 11029 6.696411 AGAGATTGTCTTTCTGACTGTTAGG 58.304 40.000 0.00 0.00 45.54 2.69
4390 11030 5.799213 AGATTGTCTTTCTGACTGTTAGGG 58.201 41.667 0.00 0.00 45.54 3.53
4391 11031 3.402628 TGTCTTTCTGACTGTTAGGGC 57.597 47.619 0.00 0.00 45.54 5.19
4392 11032 2.703536 TGTCTTTCTGACTGTTAGGGCA 59.296 45.455 0.00 0.00 45.54 5.36
4393 11033 3.327757 TGTCTTTCTGACTGTTAGGGCAT 59.672 43.478 0.00 0.00 45.54 4.40
4394 11034 3.935828 GTCTTTCTGACTGTTAGGGCATC 59.064 47.826 0.00 0.00 42.21 3.91
4395 11035 3.840666 TCTTTCTGACTGTTAGGGCATCT 59.159 43.478 0.00 0.00 0.00 2.90
4396 11036 3.895232 TTCTGACTGTTAGGGCATCTC 57.105 47.619 0.00 0.00 0.00 2.75
4397 11037 2.111384 TCTGACTGTTAGGGCATCTCC 58.889 52.381 0.00 0.00 0.00 3.71
4398 11038 1.833630 CTGACTGTTAGGGCATCTCCA 59.166 52.381 0.00 0.00 36.21 3.86
4399 11039 1.833630 TGACTGTTAGGGCATCTCCAG 59.166 52.381 0.00 0.00 36.21 3.86
4400 11040 0.543749 ACTGTTAGGGCATCTCCAGC 59.456 55.000 0.00 0.00 36.21 4.85
4461 11101 3.739167 CGGTCAAAAACGCTCCCA 58.261 55.556 0.00 0.00 0.00 4.37
4462 11102 1.574428 CGGTCAAAAACGCTCCCAG 59.426 57.895 0.00 0.00 0.00 4.45
4463 11103 1.285950 GGTCAAAAACGCTCCCAGC 59.714 57.895 0.00 0.00 38.02 4.85
4464 11104 1.285950 GTCAAAAACGCTCCCAGCC 59.714 57.895 0.00 0.00 38.18 4.85
4465 11105 1.152860 TCAAAAACGCTCCCAGCCA 60.153 52.632 0.00 0.00 38.18 4.75
4466 11106 1.007387 CAAAAACGCTCCCAGCCAC 60.007 57.895 0.00 0.00 38.18 5.01
4467 11107 1.454847 AAAAACGCTCCCAGCCACA 60.455 52.632 0.00 0.00 38.18 4.17
4468 11108 1.040339 AAAAACGCTCCCAGCCACAA 61.040 50.000 0.00 0.00 38.18 3.33
4469 11109 1.734388 AAAACGCTCCCAGCCACAAC 61.734 55.000 0.00 0.00 38.18 3.32
4470 11110 4.643387 ACGCTCCCAGCCACAACC 62.643 66.667 0.00 0.00 38.18 3.77
4473 11113 3.579302 CTCCCAGCCACAACCCCA 61.579 66.667 0.00 0.00 0.00 4.96
4474 11114 3.574074 CTCCCAGCCACAACCCCAG 62.574 68.421 0.00 0.00 0.00 4.45
4475 11115 4.684134 CCCAGCCACAACCCCAGG 62.684 72.222 0.00 0.00 0.00 4.45
4476 11116 4.684134 CCAGCCACAACCCCAGGG 62.684 72.222 0.00 0.00 42.03 4.45
4486 11126 2.676471 CCCCAGGGGCTCGTTTTG 60.676 66.667 13.35 0.00 35.35 2.44
4487 11127 3.373565 CCCAGGGGCTCGTTTTGC 61.374 66.667 0.00 0.00 0.00 3.68
4488 11128 3.737172 CCAGGGGCTCGTTTTGCG 61.737 66.667 0.00 0.00 43.01 4.85
4489 11129 4.404654 CAGGGGCTCGTTTTGCGC 62.405 66.667 0.00 0.00 41.07 6.09
4494 11134 3.416382 GCTCGTTTTGCGCCGGTA 61.416 61.111 4.18 0.00 41.07 4.02
4495 11135 2.746803 GCTCGTTTTGCGCCGGTAT 61.747 57.895 4.18 0.00 41.07 2.73
4496 11136 1.791662 CTCGTTTTGCGCCGGTATT 59.208 52.632 4.18 0.00 41.07 1.89
4497 11137 1.000884 CTCGTTTTGCGCCGGTATTA 58.999 50.000 4.18 0.00 41.07 0.98
4498 11138 1.000884 TCGTTTTGCGCCGGTATTAG 58.999 50.000 4.18 0.00 41.07 1.73
4499 11139 0.587985 CGTTTTGCGCCGGTATTAGC 60.588 55.000 4.18 2.01 0.00 3.09
4500 11140 0.248336 GTTTTGCGCCGGTATTAGCC 60.248 55.000 4.18 0.00 0.00 3.93
4501 11141 0.677098 TTTTGCGCCGGTATTAGCCA 60.677 50.000 4.18 0.00 0.00 4.75
4502 11142 0.677098 TTTGCGCCGGTATTAGCCAA 60.677 50.000 4.18 0.00 0.00 4.52
4503 11143 0.677098 TTGCGCCGGTATTAGCCAAA 60.677 50.000 4.18 0.00 0.00 3.28
4504 11144 0.677098 TGCGCCGGTATTAGCCAAAA 60.677 50.000 4.18 0.00 0.00 2.44
4505 11145 0.452585 GCGCCGGTATTAGCCAAAAA 59.547 50.000 1.90 0.00 0.00 1.94
4506 11146 1.796253 GCGCCGGTATTAGCCAAAAAC 60.796 52.381 1.90 0.00 0.00 2.43
4507 11147 1.469308 CGCCGGTATTAGCCAAAAACA 59.531 47.619 1.90 0.00 0.00 2.83
4508 11148 2.729778 CGCCGGTATTAGCCAAAAACAC 60.730 50.000 1.90 0.00 0.00 3.32
4509 11149 2.729778 GCCGGTATTAGCCAAAAACACG 60.730 50.000 1.90 0.00 0.00 4.49
4510 11150 2.159490 CCGGTATTAGCCAAAAACACGG 60.159 50.000 0.00 0.00 0.00 4.94
4516 11156 4.992294 CCAAAAACACGGCCGGCG 62.992 66.667 31.76 22.53 0.00 6.46
4537 11177 2.992124 TCGTGAGAGAAACCCAACAA 57.008 45.000 0.00 0.00 34.84 2.83
4538 11178 2.557317 TCGTGAGAGAAACCCAACAAC 58.443 47.619 0.00 0.00 34.84 3.32
4539 11179 1.602377 CGTGAGAGAAACCCAACAACC 59.398 52.381 0.00 0.00 0.00 3.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1101 2142 1.203570 ACAAGGGGAATCAGGTAGGGT 60.204 52.381 0.00 0.00 0.00 4.34
1398 2509 7.039313 TGTTGACGATATAGCTACTCAATGT 57.961 36.000 0.00 0.00 0.00 2.71
1794 2906 4.956075 ACCTCATCCAATCGGCTTTAATTT 59.044 37.500 0.00 0.00 0.00 1.82
1978 3090 6.598064 ACATAAGATTAGTTTGTCCCCTTTCG 59.402 38.462 0.00 0.00 0.00 3.46
3285 6838 0.679321 GCTGCCCAGGAAGAAGGAAG 60.679 60.000 0.00 0.00 0.00 3.46
4207 10847 2.126228 CCATGCACGTACGACCGT 60.126 61.111 24.41 10.39 42.87 4.83
4228 10868 3.256960 TGCTGAGACCCCAACCCC 61.257 66.667 0.00 0.00 0.00 4.95
4266 10906 1.992557 TCCCACCTTTGACTTAGCCAT 59.007 47.619 0.00 0.00 0.00 4.40
4374 11014 4.187694 GAGATGCCCTAACAGTCAGAAAG 58.812 47.826 0.00 0.00 0.00 2.62
4375 11015 3.055094 GGAGATGCCCTAACAGTCAGAAA 60.055 47.826 0.00 0.00 0.00 2.52
4376 11016 2.501723 GGAGATGCCCTAACAGTCAGAA 59.498 50.000 0.00 0.00 0.00 3.02
4377 11017 2.111384 GGAGATGCCCTAACAGTCAGA 58.889 52.381 0.00 0.00 0.00 3.27
4378 11018 1.833630 TGGAGATGCCCTAACAGTCAG 59.166 52.381 0.00 0.00 34.97 3.51
4379 11019 1.833630 CTGGAGATGCCCTAACAGTCA 59.166 52.381 0.00 0.00 34.97 3.41
4380 11020 1.474143 GCTGGAGATGCCCTAACAGTC 60.474 57.143 0.00 0.00 34.36 3.51
4381 11021 0.543749 GCTGGAGATGCCCTAACAGT 59.456 55.000 0.00 0.00 34.36 3.55
4382 11022 0.179034 GGCTGGAGATGCCCTAACAG 60.179 60.000 0.00 0.00 44.32 3.16
4383 11023 1.915228 GGCTGGAGATGCCCTAACA 59.085 57.895 0.00 0.00 44.32 2.41
4384 11024 4.887615 GGCTGGAGATGCCCTAAC 57.112 61.111 0.00 0.00 44.32 2.34
4444 11084 1.574428 CTGGGAGCGTTTTTGACCG 59.426 57.895 0.00 0.00 0.00 4.79
4445 11085 1.285950 GCTGGGAGCGTTTTTGACC 59.714 57.895 0.00 0.00 0.00 4.02
4446 11086 1.285950 GGCTGGGAGCGTTTTTGAC 59.714 57.895 0.00 0.00 43.62 3.18
4447 11087 1.152860 TGGCTGGGAGCGTTTTTGA 60.153 52.632 0.00 0.00 43.62 2.69
4448 11088 1.007387 GTGGCTGGGAGCGTTTTTG 60.007 57.895 0.00 0.00 43.62 2.44
4449 11089 1.040339 TTGTGGCTGGGAGCGTTTTT 61.040 50.000 0.00 0.00 43.62 1.94
4450 11090 1.454847 TTGTGGCTGGGAGCGTTTT 60.455 52.632 0.00 0.00 43.62 2.43
4451 11091 2.193536 GTTGTGGCTGGGAGCGTTT 61.194 57.895 0.00 0.00 43.62 3.60
4452 11092 2.594592 GTTGTGGCTGGGAGCGTT 60.595 61.111 0.00 0.00 43.62 4.84
4453 11093 4.643387 GGTTGTGGCTGGGAGCGT 62.643 66.667 0.00 0.00 43.62 5.07
4456 11096 3.574074 CTGGGGTTGTGGCTGGGAG 62.574 68.421 0.00 0.00 0.00 4.30
4457 11097 3.579302 CTGGGGTTGTGGCTGGGA 61.579 66.667 0.00 0.00 0.00 4.37
4458 11098 4.684134 CCTGGGGTTGTGGCTGGG 62.684 72.222 0.00 0.00 0.00 4.45
4459 11099 4.684134 CCCTGGGGTTGTGGCTGG 62.684 72.222 4.27 0.00 0.00 4.85
4460 11100 4.684134 CCCCTGGGGTTGTGGCTG 62.684 72.222 24.54 0.00 38.25 4.85
4470 11110 3.373565 GCAAAACGAGCCCCTGGG 61.374 66.667 5.50 5.50 38.57 4.45
4481 11121 0.248336 GGCTAATACCGGCGCAAAAC 60.248 55.000 10.83 0.00 0.00 2.43
4482 11122 0.677098 TGGCTAATACCGGCGCAAAA 60.677 50.000 10.83 0.00 0.00 2.44
4483 11123 0.677098 TTGGCTAATACCGGCGCAAA 60.677 50.000 10.83 0.00 0.00 3.68
4484 11124 0.677098 TTTGGCTAATACCGGCGCAA 60.677 50.000 10.83 0.00 0.00 4.85
4485 11125 0.677098 TTTTGGCTAATACCGGCGCA 60.677 50.000 10.83 0.00 0.00 6.09
4486 11126 0.452585 TTTTTGGCTAATACCGGCGC 59.547 50.000 0.00 0.00 0.00 6.53
4487 11127 1.469308 TGTTTTTGGCTAATACCGGCG 59.531 47.619 0.00 0.00 0.00 6.46
4488 11128 2.729778 CGTGTTTTTGGCTAATACCGGC 60.730 50.000 0.00 0.00 0.00 6.13
4489 11129 2.159490 CCGTGTTTTTGGCTAATACCGG 60.159 50.000 0.00 0.00 31.25 5.28
4490 11130 3.125698 CCGTGTTTTTGGCTAATACCG 57.874 47.619 0.67 3.96 0.00 4.02
4499 11139 4.992294 CGCCGGCCGTGTTTTTGG 62.992 66.667 26.12 6.93 0.00 3.28
4511 11151 3.626680 TTTCTCTCACGAGCGCCGG 62.627 63.158 19.73 0.00 43.93 6.13
4512 11152 2.126463 TTTCTCTCACGAGCGCCG 60.126 61.111 15.25 15.25 45.44 6.46
4513 11153 2.095252 GGTTTCTCTCACGAGCGCC 61.095 63.158 2.29 0.00 37.19 6.53
4514 11154 2.095252 GGGTTTCTCTCACGAGCGC 61.095 63.158 0.00 0.00 37.19 5.92
4515 11155 0.319555 TTGGGTTTCTCTCACGAGCG 60.320 55.000 0.00 0.00 37.19 5.03
4516 11156 1.149148 GTTGGGTTTCTCTCACGAGC 58.851 55.000 0.00 0.00 37.19 5.03
4517 11157 2.526304 TGTTGGGTTTCTCTCACGAG 57.474 50.000 0.00 0.00 38.67 4.18
4518 11158 2.557317 GTTGTTGGGTTTCTCTCACGA 58.443 47.619 0.00 0.00 0.00 4.35
4519 11159 1.602377 GGTTGTTGGGTTTCTCTCACG 59.398 52.381 0.00 0.00 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.