Multiple sequence alignment - TraesCS1A01G031300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G031300 chr1A 100.000 3847 0 0 1 3847 14518866 14522712 0.000000e+00 7105.0
1 TraesCS1A01G031300 chr1A 100.000 30 0 0 3674 3703 14522508 14522537 5.370000e-04 56.5
2 TraesCS1A01G031300 chr1A 100.000 30 0 0 3643 3672 14522539 14522568 5.370000e-04 56.5
3 TraesCS1A01G031300 chr1D 93.876 3364 155 22 339 3672 13040535 13043877 0.000000e+00 5024.0
4 TraesCS1A01G031300 chr1D 98.256 172 3 0 3674 3845 13043848 13044019 6.250000e-78 302.0
5 TraesCS1A01G031300 chr1D 97.561 41 1 0 3272 3312 13043328 13043368 1.920000e-08 71.3
6 TraesCS1A01G031300 chr1B 94.338 2755 130 13 389 3129 18388292 18385550 0.000000e+00 4200.0
7 TraesCS1A01G031300 chr1B 96.167 574 22 0 3272 3845 18385553 18384980 0.000000e+00 939.0
8 TraesCS1A01G031300 chr1B 100.000 28 0 0 3643 3670 18385151 18385124 7.000000e-03 52.8
9 TraesCS1A01G031300 chrUn 95.510 245 10 1 76 319 48038214 48037970 1.300000e-104 390.0
10 TraesCS1A01G031300 chrUn 95.102 245 11 1 76 319 374427794 374428038 6.030000e-103 385.0
11 TraesCS1A01G031300 chrUn 94.694 245 12 1 76 319 248181173 248181417 2.810000e-101 379.0
12 TraesCS1A01G031300 chrUn 94.694 245 12 1 76 319 353079540 353079784 2.810000e-101 379.0
13 TraesCS1A01G031300 chr4B 95.510 245 10 1 76 319 3438398 3438642 1.300000e-104 390.0
14 TraesCS1A01G031300 chr4B 94.694 245 12 1 76 319 3403439 3403683 2.810000e-101 379.0
15 TraesCS1A01G031300 chr4B 94.694 245 12 1 76 319 3460770 3461014 2.810000e-101 379.0
16 TraesCS1A01G031300 chr4B 94.694 245 12 1 76 319 3490883 3491127 2.810000e-101 379.0
17 TraesCS1A01G031300 chr4B 76.507 647 114 26 1248 1866 659569157 659569793 6.200000e-83 318.0
18 TraesCS1A01G031300 chr4B 75.734 647 119 27 1248 1866 656821474 656822110 1.350000e-74 291.0
19 TraesCS1A01G031300 chr5D 96.170 235 9 0 85 319 129481579 129481345 6.030000e-103 385.0
20 TraesCS1A01G031300 chr5A 76.043 647 117 25 1248 1866 693642195 693641559 6.250000e-78 302.0
21 TraesCS1A01G031300 chr4D 75.851 646 120 23 1248 1866 508271732 508271096 2.910000e-76 296.0
22 TraesCS1A01G031300 chr7A 80.351 285 48 5 1168 1448 420843311 420843031 3.890000e-50 209.0
23 TraesCS1A01G031300 chr7D 85.149 202 28 2 1248 1448 374571921 374571721 5.040000e-49 206.0
24 TraesCS1A01G031300 chr7B 85.149 202 28 2 1248 1448 369416947 369416747 5.040000e-49 206.0
25 TraesCS1A01G031300 chr3D 76.400 250 45 13 1570 1815 23230453 23230214 5.220000e-24 122.0
26 TraesCS1A01G031300 chr3A 77.674 215 38 10 1570 1779 32426758 32426967 5.220000e-24 122.0
27 TraesCS1A01G031300 chr3B 75.000 252 45 17 1570 1815 41015429 41015190 2.450000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G031300 chr1A 14518866 14522712 3846 False 2406.0 7105 100.000000 1 3847 3 chr1A.!!$F1 3846
1 TraesCS1A01G031300 chr1D 13040535 13044019 3484 False 1799.1 5024 96.564333 339 3845 3 chr1D.!!$F1 3506
2 TraesCS1A01G031300 chr1B 18384980 18388292 3312 True 1730.6 4200 96.835000 389 3845 3 chr1B.!!$R1 3456
3 TraesCS1A01G031300 chr4B 659569157 659569793 636 False 318.0 318 76.507000 1248 1866 1 chr4B.!!$F6 618
4 TraesCS1A01G031300 chr4B 656821474 656822110 636 False 291.0 291 75.734000 1248 1866 1 chr4B.!!$F5 618
5 TraesCS1A01G031300 chr5A 693641559 693642195 636 True 302.0 302 76.043000 1248 1866 1 chr5A.!!$R1 618
6 TraesCS1A01G031300 chr4D 508271096 508271732 636 True 296.0 296 75.851000 1248 1866 1 chr4D.!!$R1 618

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
815 833 0.106469 TCCCTCTCCAGTCTCCATCG 60.106 60.0 0.0 0.0 0.0 3.84 F
1433 1466 0.620556 ACCTCACCATCGCCATCTTT 59.379 50.0 0.0 0.0 0.0 2.52 F
2706 2757 0.745486 CATCAATCACAGCCGCCTCA 60.745 55.0 0.0 0.0 0.0 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2597 2648 0.251386 AGAGCGTGGTGAGGAAGAGA 60.251 55.000 0.00 0.00 0.00 3.10 R
2828 2879 0.528684 GCTAGCATTTCTCGTCGGCT 60.529 55.000 10.63 0.00 38.55 5.52 R
3689 3785 3.030291 ACTCTAGCTCATTACTGCAGCT 58.970 45.455 15.27 6.61 45.59 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.880886 AAATGTTTTGAGGCAAACAAGC 57.119 36.364 5.82 0.00 32.79 4.01
36 37 3.123050 GCAAACAAGCCTTACAAAGTGG 58.877 45.455 0.00 0.00 0.00 4.00
37 38 3.123050 CAAACAAGCCTTACAAAGTGGC 58.877 45.455 0.00 0.00 46.42 5.01
40 41 4.843624 GCCTTACAAAGTGGCCCT 57.156 55.556 0.00 0.00 40.71 5.19
41 42 3.051617 GCCTTACAAAGTGGCCCTT 57.948 52.632 0.00 0.00 40.71 3.95
42 43 0.603065 GCCTTACAAAGTGGCCCTTG 59.397 55.000 0.00 3.83 40.71 3.61
43 44 1.995376 CCTTACAAAGTGGCCCTTGT 58.005 50.000 16.47 16.47 32.32 3.16
44 45 1.886542 CCTTACAAAGTGGCCCTTGTC 59.113 52.381 15.90 0.00 32.32 3.18
45 46 2.489073 CCTTACAAAGTGGCCCTTGTCT 60.489 50.000 15.90 0.00 32.32 3.41
46 47 3.222603 CTTACAAAGTGGCCCTTGTCTT 58.777 45.455 15.90 3.91 32.32 3.01
47 48 2.159179 ACAAAGTGGCCCTTGTCTTT 57.841 45.000 0.00 0.76 32.32 2.52
48 49 2.466846 ACAAAGTGGCCCTTGTCTTTT 58.533 42.857 0.00 0.00 32.32 2.27
49 50 3.637769 ACAAAGTGGCCCTTGTCTTTTA 58.362 40.909 0.00 0.00 32.32 1.52
50 51 4.223144 ACAAAGTGGCCCTTGTCTTTTAT 58.777 39.130 0.00 0.00 32.32 1.40
51 52 4.653801 ACAAAGTGGCCCTTGTCTTTTATT 59.346 37.500 0.00 0.00 32.32 1.40
52 53 5.130311 ACAAAGTGGCCCTTGTCTTTTATTT 59.870 36.000 0.00 0.00 32.32 1.40
53 54 4.871933 AGTGGCCCTTGTCTTTTATTTG 57.128 40.909 0.00 0.00 0.00 2.32
54 55 4.223144 AGTGGCCCTTGTCTTTTATTTGT 58.777 39.130 0.00 0.00 0.00 2.83
55 56 4.280929 AGTGGCCCTTGTCTTTTATTTGTC 59.719 41.667 0.00 0.00 0.00 3.18
56 57 4.280929 GTGGCCCTTGTCTTTTATTTGTCT 59.719 41.667 0.00 0.00 0.00 3.41
57 58 5.475564 GTGGCCCTTGTCTTTTATTTGTCTA 59.524 40.000 0.00 0.00 0.00 2.59
58 59 6.015772 GTGGCCCTTGTCTTTTATTTGTCTAA 60.016 38.462 0.00 0.00 0.00 2.10
59 60 6.551601 TGGCCCTTGTCTTTTATTTGTCTAAA 59.448 34.615 0.00 0.00 0.00 1.85
60 61 7.070074 TGGCCCTTGTCTTTTATTTGTCTAAAA 59.930 33.333 0.00 0.00 0.00 1.52
61 62 7.598869 GGCCCTTGTCTTTTATTTGTCTAAAAG 59.401 37.037 9.11 9.11 44.53 2.27
96 97 9.807649 TGTTTAAAACTATATACTTCCTCCGTC 57.192 33.333 0.00 0.00 0.00 4.79
97 98 9.807649 GTTTAAAACTATATACTTCCTCCGTCA 57.192 33.333 0.00 0.00 0.00 4.35
98 99 9.807649 TTTAAAACTATATACTTCCTCCGTCAC 57.192 33.333 0.00 0.00 0.00 3.67
99 100 5.686159 AACTATATACTTCCTCCGTCACG 57.314 43.478 0.00 0.00 0.00 4.35
110 111 2.452767 CCGTCACGGTTTAGAAGGC 58.547 57.895 8.54 0.00 42.73 4.35
111 112 1.349259 CCGTCACGGTTTAGAAGGCG 61.349 60.000 8.54 0.00 42.73 5.52
112 113 1.785951 GTCACGGTTTAGAAGGCGC 59.214 57.895 0.00 0.00 0.00 6.53
113 114 1.735198 TCACGGTTTAGAAGGCGCG 60.735 57.895 0.00 0.00 0.00 6.86
114 115 3.116531 ACGGTTTAGAAGGCGCGC 61.117 61.111 25.94 25.94 0.00 6.86
115 116 2.813908 CGGTTTAGAAGGCGCGCT 60.814 61.111 32.29 12.85 0.00 5.92
116 117 2.388232 CGGTTTAGAAGGCGCGCTT 61.388 57.895 32.29 23.01 0.00 4.68
117 118 1.134694 GGTTTAGAAGGCGCGCTTG 59.865 57.895 32.29 0.00 0.00 4.01
118 119 1.296056 GGTTTAGAAGGCGCGCTTGA 61.296 55.000 32.29 10.01 0.00 3.02
119 120 0.515564 GTTTAGAAGGCGCGCTTGAA 59.484 50.000 32.29 15.78 0.00 2.69
120 121 1.069500 GTTTAGAAGGCGCGCTTGAAA 60.069 47.619 32.29 20.57 0.00 2.69
121 122 1.231221 TTAGAAGGCGCGCTTGAAAA 58.769 45.000 32.29 16.96 0.00 2.29
122 123 1.448985 TAGAAGGCGCGCTTGAAAAT 58.551 45.000 32.29 7.73 0.00 1.82
123 124 0.598065 AGAAGGCGCGCTTGAAAATT 59.402 45.000 32.29 6.83 0.00 1.82
124 125 0.984829 GAAGGCGCGCTTGAAAATTC 59.015 50.000 32.29 13.04 0.00 2.17
125 126 0.598065 AAGGCGCGCTTGAAAATTCT 59.402 45.000 32.29 13.22 0.00 2.40
126 127 0.169009 AGGCGCGCTTGAAAATTCTC 59.831 50.000 32.29 9.40 0.00 2.87
127 128 0.169009 GGCGCGCTTGAAAATTCTCT 59.831 50.000 32.29 0.00 0.00 3.10
128 129 1.253999 GCGCGCTTGAAAATTCTCTG 58.746 50.000 26.67 0.00 0.00 3.35
129 130 1.887320 CGCGCTTGAAAATTCTCTGG 58.113 50.000 5.56 0.00 0.00 3.86
130 131 1.466360 CGCGCTTGAAAATTCTCTGGG 60.466 52.381 5.56 0.00 0.00 4.45
131 132 1.812571 GCGCTTGAAAATTCTCTGGGA 59.187 47.619 0.00 0.00 0.00 4.37
132 133 2.414691 GCGCTTGAAAATTCTCTGGGAC 60.415 50.000 0.00 0.00 0.00 4.46
133 134 2.162408 CGCTTGAAAATTCTCTGGGACC 59.838 50.000 0.00 0.00 0.00 4.46
134 135 3.425659 GCTTGAAAATTCTCTGGGACCT 58.574 45.455 0.00 0.00 0.00 3.85
135 136 4.589908 GCTTGAAAATTCTCTGGGACCTA 58.410 43.478 0.00 0.00 0.00 3.08
136 137 4.637977 GCTTGAAAATTCTCTGGGACCTAG 59.362 45.833 0.00 0.00 0.00 3.02
137 138 4.844349 TGAAAATTCTCTGGGACCTAGG 57.156 45.455 7.41 7.41 0.00 3.02
138 139 4.175962 TGAAAATTCTCTGGGACCTAGGT 58.824 43.478 16.26 16.26 0.00 3.08
139 140 4.019321 TGAAAATTCTCTGGGACCTAGGTG 60.019 45.833 22.10 4.66 0.00 4.00
140 141 2.182516 ATTCTCTGGGACCTAGGTGG 57.817 55.000 22.10 6.79 42.93 4.61
155 156 6.248569 CCTAGGTGGTTATCTATTGGTTGT 57.751 41.667 0.00 0.00 0.00 3.32
156 157 6.055588 CCTAGGTGGTTATCTATTGGTTGTG 58.944 44.000 0.00 0.00 0.00 3.33
157 158 5.772393 AGGTGGTTATCTATTGGTTGTGA 57.228 39.130 0.00 0.00 0.00 3.58
158 159 5.745227 AGGTGGTTATCTATTGGTTGTGAG 58.255 41.667 0.00 0.00 0.00 3.51
159 160 5.487488 AGGTGGTTATCTATTGGTTGTGAGA 59.513 40.000 0.00 0.00 0.00 3.27
160 161 6.158695 AGGTGGTTATCTATTGGTTGTGAGAT 59.841 38.462 0.00 0.00 33.32 2.75
161 162 6.260936 GGTGGTTATCTATTGGTTGTGAGATG 59.739 42.308 0.00 0.00 31.25 2.90
162 163 7.047891 GTGGTTATCTATTGGTTGTGAGATGA 58.952 38.462 0.00 0.00 31.25 2.92
163 164 7.225538 GTGGTTATCTATTGGTTGTGAGATGAG 59.774 40.741 0.00 0.00 31.25 2.90
164 165 6.203723 GGTTATCTATTGGTTGTGAGATGAGC 59.796 42.308 0.00 0.00 31.25 4.26
165 166 5.627182 ATCTATTGGTTGTGAGATGAGCT 57.373 39.130 0.00 0.00 0.00 4.09
166 167 6.737720 ATCTATTGGTTGTGAGATGAGCTA 57.262 37.500 0.00 0.00 0.00 3.32
167 168 6.544928 TCTATTGGTTGTGAGATGAGCTAA 57.455 37.500 0.00 0.00 0.00 3.09
168 169 6.946340 TCTATTGGTTGTGAGATGAGCTAAA 58.054 36.000 0.00 0.00 0.00 1.85
169 170 7.394016 TCTATTGGTTGTGAGATGAGCTAAAA 58.606 34.615 0.00 0.00 0.00 1.52
170 171 6.899393 ATTGGTTGTGAGATGAGCTAAAAA 57.101 33.333 0.00 0.00 0.00 1.94
192 193 5.907197 AATAGTATTCACACTACGCATGC 57.093 39.130 7.91 7.91 33.94 4.06
193 194 3.245518 AGTATTCACACTACGCATGCA 57.754 42.857 19.57 0.00 0.00 3.96
194 195 3.797039 AGTATTCACACTACGCATGCAT 58.203 40.909 19.57 4.54 0.00 3.96
195 196 4.944048 AGTATTCACACTACGCATGCATA 58.056 39.130 19.57 5.77 0.00 3.14
196 197 5.541845 AGTATTCACACTACGCATGCATAT 58.458 37.500 19.57 4.84 0.00 1.78
197 198 6.687604 AGTATTCACACTACGCATGCATATA 58.312 36.000 19.57 5.83 0.00 0.86
198 199 6.808704 AGTATTCACACTACGCATGCATATAG 59.191 38.462 19.57 17.15 0.00 1.31
199 200 4.846779 TCACACTACGCATGCATATAGA 57.153 40.909 19.57 3.38 0.00 1.98
200 201 5.195001 TCACACTACGCATGCATATAGAA 57.805 39.130 19.57 2.99 0.00 2.10
201 202 5.596845 TCACACTACGCATGCATATAGAAA 58.403 37.500 19.57 0.00 0.00 2.52
202 203 6.223120 TCACACTACGCATGCATATAGAAAT 58.777 36.000 19.57 4.78 0.00 2.17
203 204 6.705825 TCACACTACGCATGCATATAGAAATT 59.294 34.615 19.57 0.00 0.00 1.82
204 205 6.793680 CACACTACGCATGCATATAGAAATTG 59.206 38.462 19.57 11.60 0.00 2.32
205 206 6.483307 ACACTACGCATGCATATAGAAATTGT 59.517 34.615 19.57 12.15 0.00 2.71
206 207 7.655732 ACACTACGCATGCATATAGAAATTGTA 59.344 33.333 19.57 6.04 0.00 2.41
207 208 8.659491 CACTACGCATGCATATAGAAATTGTAT 58.341 33.333 19.57 0.00 0.00 2.29
208 209 9.869757 ACTACGCATGCATATAGAAATTGTATA 57.130 29.630 19.57 0.00 0.00 1.47
211 212 8.542953 ACGCATGCATATAGAAATTGTATATCG 58.457 33.333 19.57 4.02 0.00 2.92
212 213 8.006027 CGCATGCATATAGAAATTGTATATCGG 58.994 37.037 19.57 0.00 0.00 4.18
213 214 9.045223 GCATGCATATAGAAATTGTATATCGGA 57.955 33.333 14.21 0.12 0.00 4.55
247 248 9.611284 TTAGCTATTAGAAATAAATGCAATGCG 57.389 29.630 0.00 0.00 0.00 4.73
248 249 7.651808 AGCTATTAGAAATAAATGCAATGCGT 58.348 30.769 0.00 0.00 0.00 5.24
249 250 7.805071 AGCTATTAGAAATAAATGCAATGCGTC 59.195 33.333 0.00 0.00 0.00 5.19
250 251 7.061094 GCTATTAGAAATAAATGCAATGCGTCC 59.939 37.037 0.00 0.00 0.00 4.79
251 252 4.989279 AGAAATAAATGCAATGCGTCCT 57.011 36.364 0.00 0.00 0.00 3.85
252 253 7.561021 TTAGAAATAAATGCAATGCGTCCTA 57.439 32.000 0.00 0.00 0.00 2.94
253 254 6.449635 AGAAATAAATGCAATGCGTCCTAA 57.550 33.333 0.00 0.00 0.00 2.69
254 255 6.862209 AGAAATAAATGCAATGCGTCCTAAA 58.138 32.000 0.00 0.00 0.00 1.85
255 256 6.751888 AGAAATAAATGCAATGCGTCCTAAAC 59.248 34.615 0.00 0.00 0.00 2.01
256 257 2.939460 AATGCAATGCGTCCTAAACC 57.061 45.000 0.00 0.00 0.00 3.27
257 258 2.128771 ATGCAATGCGTCCTAAACCT 57.871 45.000 0.00 0.00 0.00 3.50
258 259 1.904287 TGCAATGCGTCCTAAACCTT 58.096 45.000 0.00 0.00 0.00 3.50
259 260 1.539388 TGCAATGCGTCCTAAACCTTG 59.461 47.619 0.00 0.00 0.00 3.61
260 261 1.539827 GCAATGCGTCCTAAACCTTGT 59.460 47.619 0.00 0.00 0.00 3.16
261 262 2.414161 GCAATGCGTCCTAAACCTTGTC 60.414 50.000 0.00 0.00 0.00 3.18
262 263 3.074412 CAATGCGTCCTAAACCTTGTCT 58.926 45.455 0.00 0.00 0.00 3.41
263 264 4.250464 CAATGCGTCCTAAACCTTGTCTA 58.750 43.478 0.00 0.00 0.00 2.59
264 265 4.755266 ATGCGTCCTAAACCTTGTCTAT 57.245 40.909 0.00 0.00 0.00 1.98
265 266 4.546829 TGCGTCCTAAACCTTGTCTATT 57.453 40.909 0.00 0.00 0.00 1.73
266 267 4.250464 TGCGTCCTAAACCTTGTCTATTG 58.750 43.478 0.00 0.00 0.00 1.90
267 268 4.251268 GCGTCCTAAACCTTGTCTATTGT 58.749 43.478 0.00 0.00 0.00 2.71
268 269 4.092968 GCGTCCTAAACCTTGTCTATTGTG 59.907 45.833 0.00 0.00 0.00 3.33
269 270 4.630069 CGTCCTAAACCTTGTCTATTGTGG 59.370 45.833 0.00 0.00 0.00 4.17
270 271 5.568023 CGTCCTAAACCTTGTCTATTGTGGA 60.568 44.000 0.00 0.00 0.00 4.02
271 272 6.235664 GTCCTAAACCTTGTCTATTGTGGAA 58.764 40.000 0.00 0.00 0.00 3.53
272 273 6.713450 GTCCTAAACCTTGTCTATTGTGGAAA 59.287 38.462 0.00 0.00 0.00 3.13
273 274 6.713450 TCCTAAACCTTGTCTATTGTGGAAAC 59.287 38.462 0.00 0.00 0.00 2.78
274 275 5.432885 AAACCTTGTCTATTGTGGAAACG 57.567 39.130 0.00 0.00 0.00 3.60
275 276 2.812011 ACCTTGTCTATTGTGGAAACGC 59.188 45.455 0.00 0.00 42.66 4.84
290 291 7.033292 GTGGAAACGCACATAAATTTAACTG 57.967 36.000 1.21 0.00 41.67 3.16
291 292 6.639279 GTGGAAACGCACATAAATTTAACTGT 59.361 34.615 1.21 0.31 41.67 3.55
292 293 6.638873 TGGAAACGCACATAAATTTAACTGTG 59.361 34.615 20.42 20.42 41.44 3.66
301 302 9.906660 CACATAAATTTAACTGTGCCTTCTAAA 57.093 29.630 15.46 0.00 33.35 1.85
302 303 9.908152 ACATAAATTTAACTGTGCCTTCTAAAC 57.092 29.630 1.21 0.00 0.00 2.01
305 306 7.582667 AATTTAACTGTGCCTTCTAAACTGT 57.417 32.000 0.00 0.00 0.00 3.55
306 307 6.371809 TTTAACTGTGCCTTCTAAACTGTG 57.628 37.500 0.00 0.00 0.00 3.66
307 308 3.838244 ACTGTGCCTTCTAAACTGTGA 57.162 42.857 0.00 0.00 0.00 3.58
308 309 3.467803 ACTGTGCCTTCTAAACTGTGAC 58.532 45.455 0.00 0.00 0.00 3.67
309 310 2.476619 CTGTGCCTTCTAAACTGTGACG 59.523 50.000 0.00 0.00 0.00 4.35
310 311 1.798813 GTGCCTTCTAAACTGTGACGG 59.201 52.381 0.00 0.00 0.00 4.79
311 312 1.689813 TGCCTTCTAAACTGTGACGGA 59.310 47.619 0.00 0.00 0.00 4.69
312 313 2.288825 TGCCTTCTAAACTGTGACGGAG 60.289 50.000 0.00 0.00 0.00 4.63
313 314 2.931320 GCCTTCTAAACTGTGACGGAGG 60.931 54.545 0.00 0.00 0.00 4.30
314 315 2.353803 CCTTCTAAACTGTGACGGAGGG 60.354 54.545 0.00 0.00 0.00 4.30
315 316 2.297698 TCTAAACTGTGACGGAGGGA 57.702 50.000 0.00 0.00 0.00 4.20
316 317 2.168496 TCTAAACTGTGACGGAGGGAG 58.832 52.381 0.00 0.00 0.00 4.30
317 318 1.893801 CTAAACTGTGACGGAGGGAGT 59.106 52.381 0.00 0.00 0.00 3.85
318 319 2.005370 AAACTGTGACGGAGGGAGTA 57.995 50.000 0.00 0.00 0.00 2.59
319 320 2.005370 AACTGTGACGGAGGGAGTAA 57.995 50.000 0.00 0.00 0.00 2.24
320 321 1.546961 ACTGTGACGGAGGGAGTAAG 58.453 55.000 0.00 0.00 0.00 2.34
321 322 1.203025 ACTGTGACGGAGGGAGTAAGT 60.203 52.381 0.00 0.00 0.00 2.24
322 323 1.893801 CTGTGACGGAGGGAGTAAGTT 59.106 52.381 0.00 0.00 0.00 2.66
323 324 1.616865 TGTGACGGAGGGAGTAAGTTG 59.383 52.381 0.00 0.00 0.00 3.16
324 325 1.891150 GTGACGGAGGGAGTAAGTTGA 59.109 52.381 0.00 0.00 0.00 3.18
325 326 2.496470 GTGACGGAGGGAGTAAGTTGAT 59.504 50.000 0.00 0.00 0.00 2.57
326 327 2.758979 TGACGGAGGGAGTAAGTTGATC 59.241 50.000 0.00 0.00 0.00 2.92
327 328 1.749634 ACGGAGGGAGTAAGTTGATCG 59.250 52.381 0.00 0.00 0.00 3.69
328 329 2.022195 CGGAGGGAGTAAGTTGATCGA 58.978 52.381 0.00 0.00 0.00 3.59
329 330 2.223525 CGGAGGGAGTAAGTTGATCGAC 60.224 54.545 4.78 4.78 0.00 4.20
330 331 2.758979 GGAGGGAGTAAGTTGATCGACA 59.241 50.000 15.59 0.00 0.00 4.35
331 332 3.194968 GGAGGGAGTAAGTTGATCGACAA 59.805 47.826 15.59 0.04 36.02 3.18
353 354 3.520317 ACCGAGGACATTACCAACCAATA 59.480 43.478 0.00 0.00 0.00 1.90
356 357 5.364778 CGAGGACATTACCAACCAATATCA 58.635 41.667 0.00 0.00 0.00 2.15
357 358 5.466728 CGAGGACATTACCAACCAATATCAG 59.533 44.000 0.00 0.00 0.00 2.90
363 364 3.992943 ACCAACCAATATCAGACCGAA 57.007 42.857 0.00 0.00 0.00 4.30
370 371 4.060900 CCAATATCAGACCGAATGGACAG 58.939 47.826 0.00 0.00 39.21 3.51
374 375 7.326454 CAATATCAGACCGAATGGACAGATAT 58.674 38.462 6.09 6.09 44.63 1.63
378 379 4.926238 CAGACCGAATGGACAGATATAAGC 59.074 45.833 0.00 0.00 39.21 3.09
380 381 3.904339 ACCGAATGGACAGATATAAGCCT 59.096 43.478 0.00 0.00 39.21 4.58
381 382 5.084519 ACCGAATGGACAGATATAAGCCTA 58.915 41.667 0.00 0.00 39.21 3.93
562 565 2.901192 TGTGATCGTTAGTGGGAAGGAA 59.099 45.455 0.00 0.00 0.00 3.36
700 703 1.680522 CCTGCGACCATCTAGCACCT 61.681 60.000 0.00 0.00 36.79 4.00
758 776 2.283388 ACCATTGGCTGCCACCAG 60.283 61.111 23.30 14.80 41.82 4.00
800 818 1.004918 GCTTGTAGTGCACGTCCCT 60.005 57.895 12.01 0.00 0.00 4.20
801 819 1.014564 GCTTGTAGTGCACGTCCCTC 61.015 60.000 12.01 0.00 0.00 4.30
802 820 0.603569 CTTGTAGTGCACGTCCCTCT 59.396 55.000 12.01 0.00 0.00 3.69
803 821 0.601558 TTGTAGTGCACGTCCCTCTC 59.398 55.000 12.01 0.00 0.00 3.20
804 822 1.248785 TGTAGTGCACGTCCCTCTCC 61.249 60.000 12.01 0.00 0.00 3.71
805 823 1.076014 TAGTGCACGTCCCTCTCCA 59.924 57.895 12.01 0.00 0.00 3.86
806 824 0.965866 TAGTGCACGTCCCTCTCCAG 60.966 60.000 12.01 0.00 0.00 3.86
815 833 0.106469 TCCCTCTCCAGTCTCCATCG 60.106 60.000 0.00 0.00 0.00 3.84
831 849 2.530177 CATCGCTTGTGATCGTGTAGT 58.470 47.619 0.00 0.00 0.00 2.73
897 915 3.002791 CGATCCAGCAAGCAAGAACTAA 58.997 45.455 0.00 0.00 0.00 2.24
949 967 6.726299 CCACTGGTATATTCTCCTGAAGGATA 59.274 42.308 0.00 0.00 44.46 2.59
974 992 3.200825 TCCATCCATCTTGTCCTTCTTCC 59.799 47.826 0.00 0.00 0.00 3.46
985 1003 2.299297 GTCCTTCTTCCTTCGACCTCAA 59.701 50.000 0.00 0.00 0.00 3.02
986 1004 2.563179 TCCTTCTTCCTTCGACCTCAAG 59.437 50.000 0.00 0.00 0.00 3.02
987 1005 2.342179 CTTCTTCCTTCGACCTCAAGC 58.658 52.381 0.00 0.00 0.00 4.01
988 1006 1.633774 TCTTCCTTCGACCTCAAGCT 58.366 50.000 0.00 0.00 0.00 3.74
1020 1038 0.963225 TGGTTCGTGATTGAGACCGA 59.037 50.000 0.00 0.00 0.00 4.69
1021 1039 1.548719 TGGTTCGTGATTGAGACCGAT 59.451 47.619 0.00 0.00 0.00 4.18
1022 1040 2.028476 TGGTTCGTGATTGAGACCGATT 60.028 45.455 0.00 0.00 0.00 3.34
1023 1041 2.348666 GGTTCGTGATTGAGACCGATTG 59.651 50.000 0.00 0.00 0.00 2.67
1433 1466 0.620556 ACCTCACCATCGCCATCTTT 59.379 50.000 0.00 0.00 0.00 2.52
1895 1946 3.827898 CTCCAGGTCCTCGTCGCC 61.828 72.222 0.00 0.00 0.00 5.54
2168 2219 4.651503 ACGATCTTGTTCTGGACCATCTAT 59.348 41.667 0.00 0.00 0.00 1.98
2288 2339 1.452651 CGCCATCATGCTGACCCTT 60.453 57.895 0.00 0.00 0.00 3.95
2306 2357 2.954868 GCCGTCTATGACCGCGTG 60.955 66.667 4.92 0.00 28.88 5.34
2477 2528 1.608717 GGACCACTCTGCCGATCAGT 61.609 60.000 0.00 0.00 43.32 3.41
2480 2531 0.817654 CCACTCTGCCGATCAGTGTA 59.182 55.000 8.76 0.00 44.90 2.90
2597 2648 1.296715 GAAGACCATGAGCACCGGT 59.703 57.895 0.00 0.00 35.12 5.28
2706 2757 0.745486 CATCAATCACAGCCGCCTCA 60.745 55.000 0.00 0.00 0.00 3.86
2739 2790 2.992689 TCCTCGCCGTGCTTGGTA 60.993 61.111 0.00 0.00 0.00 3.25
2742 2793 4.382320 TCGCCGTGCTTGGTACCC 62.382 66.667 10.07 0.00 0.00 3.69
2750 2801 1.626825 GTGCTTGGTACCCTCAACCTA 59.373 52.381 10.07 0.00 37.91 3.08
2828 2879 4.758251 CCACATCCCGCGACAGCA 62.758 66.667 8.23 0.00 45.49 4.41
2848 2899 1.491505 GCCGACGAGAAATGCTAGCC 61.492 60.000 13.29 0.00 0.00 3.93
2857 2908 2.484287 AAATGCTAGCCGGTGCAGGT 62.484 55.000 13.29 10.61 42.74 4.00
2886 2941 6.091305 CGTTCATTACTGGATGTGCATATAGG 59.909 42.308 0.00 0.00 0.00 2.57
2902 2957 1.586586 TAGGTCCATCCGGTCTGGGA 61.587 60.000 20.81 12.43 41.99 4.37
2941 2996 3.113322 CCATGTACGTCCGTATGTGAAG 58.887 50.000 2.56 0.00 32.82 3.02
2950 3005 4.210537 CGTCCGTATGTGAAGAACTTGTTT 59.789 41.667 0.00 0.00 0.00 2.83
2951 3006 5.440685 GTCCGTATGTGAAGAACTTGTTTG 58.559 41.667 0.00 0.00 0.00 2.93
3039 3095 7.017645 CGTGGAAAGAGTGAGATATGTTTTTG 58.982 38.462 0.00 0.00 0.00 2.44
3058 3114 9.694137 TGTTTTTGTTTCCGTTTTATTATAGGG 57.306 29.630 0.00 0.00 0.00 3.53
3059 3115 9.695526 GTTTTTGTTTCCGTTTTATTATAGGGT 57.304 29.630 0.00 0.00 0.00 4.34
3069 3125 7.201582 CCGTTTTATTATAGGGTCGCAATATCC 60.202 40.741 0.00 0.00 0.00 2.59
3098 3154 4.514066 ACGGTTGGTCATTTCAGTTTAGTC 59.486 41.667 0.00 0.00 0.00 2.59
3108 3164 2.871133 TCAGTTTAGTCGTATGGCGTG 58.129 47.619 0.00 0.00 42.13 5.34
3129 3185 5.036737 GTGGTCTGTTTCTTCAAACACATG 58.963 41.667 0.00 0.00 45.73 3.21
3130 3186 4.704540 TGGTCTGTTTCTTCAAACACATGT 59.295 37.500 0.00 0.00 45.73 3.21
3131 3187 5.163663 TGGTCTGTTTCTTCAAACACATGTC 60.164 40.000 0.00 0.00 45.73 3.06
3132 3188 5.163663 GGTCTGTTTCTTCAAACACATGTCA 60.164 40.000 0.00 0.00 45.73 3.58
3134 3190 6.974622 GTCTGTTTCTTCAAACACATGTCAAT 59.025 34.615 0.00 0.00 45.73 2.57
3135 3191 7.489113 GTCTGTTTCTTCAAACACATGTCAATT 59.511 33.333 0.00 0.00 45.73 2.32
3136 3192 8.034215 TCTGTTTCTTCAAACACATGTCAATTT 58.966 29.630 0.00 0.00 45.73 1.82
3137 3193 8.183830 TGTTTCTTCAAACACATGTCAATTTC 57.816 30.769 0.00 0.00 45.73 2.17
3138 3194 8.034215 TGTTTCTTCAAACACATGTCAATTTCT 58.966 29.630 0.00 0.00 45.73 2.52
3139 3195 7.990541 TTCTTCAAACACATGTCAATTTCTG 57.009 32.000 0.00 0.00 0.00 3.02
3140 3196 6.506147 TCTTCAAACACATGTCAATTTCTGG 58.494 36.000 0.00 0.00 0.00 3.86
3141 3197 5.850557 TCAAACACATGTCAATTTCTGGT 57.149 34.783 0.00 0.00 0.00 4.00
3142 3198 6.951062 TCAAACACATGTCAATTTCTGGTA 57.049 33.333 0.00 0.00 0.00 3.25
3143 3199 7.340122 TCAAACACATGTCAATTTCTGGTAA 57.660 32.000 0.00 0.00 0.00 2.85
3144 3200 7.424803 TCAAACACATGTCAATTTCTGGTAAG 58.575 34.615 0.00 0.00 0.00 2.34
3147 3203 7.765695 ACACATGTCAATTTCTGGTAAGATT 57.234 32.000 0.00 0.00 30.72 2.40
3148 3204 8.181904 ACACATGTCAATTTCTGGTAAGATTT 57.818 30.769 0.00 0.00 30.72 2.17
3149 3205 8.641541 ACACATGTCAATTTCTGGTAAGATTTT 58.358 29.630 0.00 0.00 30.72 1.82
3150 3206 9.480053 CACATGTCAATTTCTGGTAAGATTTTT 57.520 29.630 0.00 0.00 30.72 1.94
3172 3234 5.776519 TTTCAAACAACAGCATTTGTCAC 57.223 34.783 3.66 0.00 38.82 3.67
3200 3262 5.695851 ACTTGATAAAGTTGCCACAGAAG 57.304 39.130 0.00 0.00 0.00 2.85
3268 3330 4.080469 TCACTACCGTTTTATATTGCCCCA 60.080 41.667 0.00 0.00 0.00 4.96
3271 3333 6.487331 CACTACCGTTTTATATTGCCCCATAA 59.513 38.462 0.00 0.00 0.00 1.90
3337 3399 6.000219 ACATATCCTAGAACATTGGCATGAC 59.000 40.000 0.00 0.00 34.11 3.06
3361 3423 6.209391 ACCACCAACTTGATATCTTCCAAAAG 59.791 38.462 3.98 0.75 0.00 2.27
3431 3493 3.319122 GGGTTTCATATCCATGAGCAACC 59.681 47.826 10.68 10.68 44.46 3.77
3476 3538 2.409378 GCAAATTGCCGATTGTGAACAG 59.591 45.455 6.72 0.00 37.42 3.16
3497 3559 4.023193 CAGTCTTAACGGCAAATTGTCCTT 60.023 41.667 0.00 0.00 0.00 3.36
3498 3560 4.215613 AGTCTTAACGGCAAATTGTCCTTC 59.784 41.667 0.00 0.00 0.00 3.46
3499 3561 4.215613 GTCTTAACGGCAAATTGTCCTTCT 59.784 41.667 0.00 0.00 0.00 2.85
3540 3605 2.357323 GGTACCCGTGAGTTACTCTAGC 59.643 54.545 13.86 3.33 0.00 3.42
3661 3757 6.146184 GTGCACGATCAACATGTATATAAGCT 59.854 38.462 0.00 0.00 0.00 3.74
3662 3758 6.146021 TGCACGATCAACATGTATATAAGCTG 59.854 38.462 0.00 0.00 0.00 4.24
3663 3759 6.528826 CACGATCAACATGTATATAAGCTGC 58.471 40.000 0.00 0.00 0.00 5.25
3664 3760 6.146021 CACGATCAACATGTATATAAGCTGCA 59.854 38.462 0.00 0.00 0.00 4.41
3665 3761 6.367149 ACGATCAACATGTATATAAGCTGCAG 59.633 38.462 10.11 10.11 0.00 4.41
3666 3762 6.367149 CGATCAACATGTATATAAGCTGCAGT 59.633 38.462 16.64 0.00 0.00 4.40
3667 3763 7.542130 CGATCAACATGTATATAAGCTGCAGTA 59.458 37.037 16.64 0.35 0.00 2.74
3668 3764 9.208022 GATCAACATGTATATAAGCTGCAGTAA 57.792 33.333 16.64 1.08 0.00 2.24
3669 3765 9.730705 ATCAACATGTATATAAGCTGCAGTAAT 57.269 29.630 16.64 9.00 0.00 1.89
3670 3766 8.992073 TCAACATGTATATAAGCTGCAGTAATG 58.008 33.333 16.64 8.43 0.00 1.90
3671 3767 8.992073 CAACATGTATATAAGCTGCAGTAATGA 58.008 33.333 16.64 0.00 0.00 2.57
3672 3768 9.559732 AACATGTATATAAGCTGCAGTAATGAA 57.440 29.630 16.64 0.00 0.00 2.57
3673 3769 9.212641 ACATGTATATAAGCTGCAGTAATGAAG 57.787 33.333 16.64 0.00 0.00 3.02
3674 3770 9.428097 CATGTATATAAGCTGCAGTAATGAAGA 57.572 33.333 16.64 0.00 0.00 2.87
3676 3772 9.645059 TGTATATAAGCTGCAGTAATGAAGATC 57.355 33.333 16.64 0.00 0.00 2.75
3677 3773 9.645059 GTATATAAGCTGCAGTAATGAAGATCA 57.355 33.333 16.64 0.00 0.00 2.92
3679 3775 5.557891 AAGCTGCAGTAATGAAGATCAAC 57.442 39.130 16.64 0.00 0.00 3.18
3680 3776 4.582869 AGCTGCAGTAATGAAGATCAACA 58.417 39.130 16.64 0.00 0.00 3.33
3681 3777 5.191426 AGCTGCAGTAATGAAGATCAACAT 58.809 37.500 16.64 0.00 0.00 2.71
3682 3778 5.066117 AGCTGCAGTAATGAAGATCAACATG 59.934 40.000 16.64 0.00 0.00 3.21
3683 3779 5.163683 GCTGCAGTAATGAAGATCAACATGT 60.164 40.000 16.64 0.00 0.00 3.21
3684 3780 6.037500 GCTGCAGTAATGAAGATCAACATGTA 59.962 38.462 16.64 0.00 0.00 2.29
3685 3781 7.255035 GCTGCAGTAATGAAGATCAACATGTAT 60.255 37.037 16.64 0.00 0.00 2.29
3686 3782 9.264719 CTGCAGTAATGAAGATCAACATGTATA 57.735 33.333 5.25 0.00 0.00 1.47
3687 3783 9.783081 TGCAGTAATGAAGATCAACATGTATAT 57.217 29.630 0.00 0.00 0.00 0.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 5.469760 GGCTTGTTTGCCTCAAAACATTTAT 59.530 36.000 3.57 0.00 46.44 1.40
2 3 4.813697 GGCTTGTTTGCCTCAAAACATTTA 59.186 37.500 3.57 0.00 46.44 1.40
3 4 3.627123 GGCTTGTTTGCCTCAAAACATTT 59.373 39.130 3.57 0.00 46.44 2.32
4 5 3.205338 GGCTTGTTTGCCTCAAAACATT 58.795 40.909 3.57 0.00 46.44 2.71
5 6 2.837498 GGCTTGTTTGCCTCAAAACAT 58.163 42.857 3.57 0.00 46.44 2.71
15 16 3.123050 CCACTTTGTAAGGCTTGTTTGC 58.877 45.455 10.69 0.00 0.00 3.68
16 17 3.123050 GCCACTTTGTAAGGCTTGTTTG 58.877 45.455 10.69 0.00 44.92 2.93
17 18 3.452755 GCCACTTTGTAAGGCTTGTTT 57.547 42.857 10.69 0.00 44.92 2.83
24 25 1.886542 GACAAGGGCCACTTTGTAAGG 59.113 52.381 16.51 3.34 37.29 2.69
25 26 2.863809 AGACAAGGGCCACTTTGTAAG 58.136 47.619 16.51 3.91 37.29 2.34
26 27 3.306472 AAGACAAGGGCCACTTTGTAA 57.694 42.857 16.51 0.00 37.29 2.41
27 28 3.306472 AAAGACAAGGGCCACTTTGTA 57.694 42.857 16.51 0.00 37.29 2.41
28 29 2.159179 AAAGACAAGGGCCACTTTGT 57.841 45.000 16.50 16.50 37.29 2.83
29 30 4.871933 ATAAAAGACAAGGGCCACTTTG 57.128 40.909 6.18 8.75 37.29 2.77
30 31 5.130311 ACAAATAAAAGACAAGGGCCACTTT 59.870 36.000 6.18 9.09 37.29 2.66
31 32 4.653801 ACAAATAAAAGACAAGGGCCACTT 59.346 37.500 6.18 2.33 41.00 3.16
32 33 4.223144 ACAAATAAAAGACAAGGGCCACT 58.777 39.130 6.18 0.00 0.00 4.00
33 34 4.280929 AGACAAATAAAAGACAAGGGCCAC 59.719 41.667 6.18 0.00 0.00 5.01
34 35 4.479158 AGACAAATAAAAGACAAGGGCCA 58.521 39.130 6.18 0.00 0.00 5.36
35 36 6.584185 TTAGACAAATAAAAGACAAGGGCC 57.416 37.500 0.00 0.00 0.00 5.80
70 71 9.807649 GACGGAGGAAGTATATAGTTTTAAACA 57.192 33.333 10.60 0.00 0.00 2.83
71 72 9.807649 TGACGGAGGAAGTATATAGTTTTAAAC 57.192 33.333 4.31 0.00 0.00 2.01
72 73 9.807649 GTGACGGAGGAAGTATATAGTTTTAAA 57.192 33.333 4.31 0.00 0.00 1.52
73 74 8.131100 CGTGACGGAGGAAGTATATAGTTTTAA 58.869 37.037 4.31 0.00 0.00 1.52
74 75 7.642669 CGTGACGGAGGAAGTATATAGTTTTA 58.357 38.462 4.31 0.00 0.00 1.52
75 76 6.501781 CGTGACGGAGGAAGTATATAGTTTT 58.498 40.000 4.31 0.00 0.00 2.43
76 77 6.069684 CGTGACGGAGGAAGTATATAGTTT 57.930 41.667 4.31 0.00 0.00 2.66
77 78 5.686159 CGTGACGGAGGAAGTATATAGTT 57.314 43.478 2.31 2.31 0.00 2.24
93 94 1.952266 GCGCCTTCTAAACCGTGACG 61.952 60.000 0.00 0.00 0.00 4.35
94 95 1.785951 GCGCCTTCTAAACCGTGAC 59.214 57.895 0.00 0.00 0.00 3.67
95 96 1.735198 CGCGCCTTCTAAACCGTGA 60.735 57.895 0.00 0.00 33.47 4.35
96 97 2.776072 CGCGCCTTCTAAACCGTG 59.224 61.111 0.00 0.00 0.00 4.94
97 98 3.116531 GCGCGCCTTCTAAACCGT 61.117 61.111 23.24 0.00 0.00 4.83
98 99 2.388232 AAGCGCGCCTTCTAAACCG 61.388 57.895 30.33 0.00 0.00 4.44
99 100 1.134694 CAAGCGCGCCTTCTAAACC 59.865 57.895 30.33 0.00 0.00 3.27
100 101 0.515564 TTCAAGCGCGCCTTCTAAAC 59.484 50.000 30.33 0.00 0.00 2.01
101 102 1.231221 TTTCAAGCGCGCCTTCTAAA 58.769 45.000 30.33 17.92 0.00 1.85
102 103 1.231221 TTTTCAAGCGCGCCTTCTAA 58.769 45.000 30.33 14.41 0.00 2.10
103 104 1.448985 ATTTTCAAGCGCGCCTTCTA 58.551 45.000 30.33 9.84 0.00 2.10
104 105 0.598065 AATTTTCAAGCGCGCCTTCT 59.402 45.000 30.33 5.98 0.00 2.85
105 106 0.984829 GAATTTTCAAGCGCGCCTTC 59.015 50.000 30.33 14.83 0.00 3.46
106 107 0.598065 AGAATTTTCAAGCGCGCCTT 59.402 45.000 30.33 18.49 0.00 4.35
107 108 0.169009 GAGAATTTTCAAGCGCGCCT 59.831 50.000 30.33 13.59 0.00 5.52
108 109 0.169009 AGAGAATTTTCAAGCGCGCC 59.831 50.000 30.33 10.31 0.00 6.53
109 110 1.253999 CAGAGAATTTTCAAGCGCGC 58.746 50.000 26.66 26.66 0.00 6.86
110 111 1.466360 CCCAGAGAATTTTCAAGCGCG 60.466 52.381 0.00 0.00 0.00 6.86
111 112 1.812571 TCCCAGAGAATTTTCAAGCGC 59.187 47.619 0.00 0.00 0.00 5.92
112 113 2.162408 GGTCCCAGAGAATTTTCAAGCG 59.838 50.000 0.00 0.00 0.00 4.68
113 114 3.425659 AGGTCCCAGAGAATTTTCAAGC 58.574 45.455 0.00 0.00 0.00 4.01
114 115 5.189180 CCTAGGTCCCAGAGAATTTTCAAG 58.811 45.833 0.00 0.00 0.00 3.02
115 116 4.601857 ACCTAGGTCCCAGAGAATTTTCAA 59.398 41.667 9.21 0.00 0.00 2.69
116 117 4.019321 CACCTAGGTCCCAGAGAATTTTCA 60.019 45.833 12.84 0.00 0.00 2.69
117 118 4.518249 CACCTAGGTCCCAGAGAATTTTC 58.482 47.826 12.84 0.00 0.00 2.29
118 119 3.267031 CCACCTAGGTCCCAGAGAATTTT 59.733 47.826 12.84 0.00 0.00 1.82
119 120 2.846827 CCACCTAGGTCCCAGAGAATTT 59.153 50.000 12.84 0.00 0.00 1.82
120 121 2.482494 CCACCTAGGTCCCAGAGAATT 58.518 52.381 12.84 0.00 0.00 2.17
121 122 2.182516 CCACCTAGGTCCCAGAGAAT 57.817 55.000 12.84 0.00 0.00 2.40
122 123 3.711849 CCACCTAGGTCCCAGAGAA 57.288 57.895 12.84 0.00 0.00 2.87
132 133 6.055588 CACAACCAATAGATAACCACCTAGG 58.944 44.000 7.41 7.41 45.67 3.02
133 134 6.884832 TCACAACCAATAGATAACCACCTAG 58.115 40.000 0.00 0.00 0.00 3.02
134 135 6.670464 TCTCACAACCAATAGATAACCACCTA 59.330 38.462 0.00 0.00 0.00 3.08
135 136 5.487488 TCTCACAACCAATAGATAACCACCT 59.513 40.000 0.00 0.00 0.00 4.00
136 137 5.741011 TCTCACAACCAATAGATAACCACC 58.259 41.667 0.00 0.00 0.00 4.61
137 138 7.047891 TCATCTCACAACCAATAGATAACCAC 58.952 38.462 0.00 0.00 0.00 4.16
138 139 7.194112 TCATCTCACAACCAATAGATAACCA 57.806 36.000 0.00 0.00 0.00 3.67
139 140 6.203723 GCTCATCTCACAACCAATAGATAACC 59.796 42.308 0.00 0.00 0.00 2.85
140 141 6.989169 AGCTCATCTCACAACCAATAGATAAC 59.011 38.462 0.00 0.00 0.00 1.89
141 142 7.129457 AGCTCATCTCACAACCAATAGATAA 57.871 36.000 0.00 0.00 0.00 1.75
142 143 6.737720 AGCTCATCTCACAACCAATAGATA 57.262 37.500 0.00 0.00 0.00 1.98
143 144 5.627182 AGCTCATCTCACAACCAATAGAT 57.373 39.130 0.00 0.00 0.00 1.98
144 145 6.544928 TTAGCTCATCTCACAACCAATAGA 57.455 37.500 0.00 0.00 0.00 1.98
145 146 7.615582 TTTTAGCTCATCTCACAACCAATAG 57.384 36.000 0.00 0.00 0.00 1.73
146 147 7.994425 TTTTTAGCTCATCTCACAACCAATA 57.006 32.000 0.00 0.00 0.00 1.90
147 148 6.899393 TTTTTAGCTCATCTCACAACCAAT 57.101 33.333 0.00 0.00 0.00 3.16
167 168 7.148323 TGCATGCGTAGTGTGAATACTATTTTT 60.148 33.333 14.09 0.00 35.75 1.94
168 169 6.315144 TGCATGCGTAGTGTGAATACTATTTT 59.685 34.615 14.09 0.00 35.75 1.82
169 170 5.815222 TGCATGCGTAGTGTGAATACTATTT 59.185 36.000 14.09 0.00 35.75 1.40
170 171 5.356426 TGCATGCGTAGTGTGAATACTATT 58.644 37.500 14.09 0.00 35.75 1.73
171 172 4.944048 TGCATGCGTAGTGTGAATACTAT 58.056 39.130 14.09 0.00 35.75 2.12
172 173 4.379339 TGCATGCGTAGTGTGAATACTA 57.621 40.909 14.09 0.00 32.19 1.82
173 174 3.245518 TGCATGCGTAGTGTGAATACT 57.754 42.857 14.09 0.00 34.71 2.12
174 175 5.845985 ATATGCATGCGTAGTGTGAATAC 57.154 39.130 23.20 0.00 0.00 1.89
175 176 6.919721 TCTATATGCATGCGTAGTGTGAATA 58.080 36.000 23.20 10.20 0.00 1.75
176 177 5.783111 TCTATATGCATGCGTAGTGTGAAT 58.217 37.500 23.20 9.61 0.00 2.57
177 178 5.195001 TCTATATGCATGCGTAGTGTGAA 57.805 39.130 23.20 2.26 0.00 3.18
178 179 4.846779 TCTATATGCATGCGTAGTGTGA 57.153 40.909 23.20 15.02 0.00 3.58
179 180 5.905480 TTTCTATATGCATGCGTAGTGTG 57.095 39.130 23.20 13.27 0.00 3.82
180 181 6.483307 ACAATTTCTATATGCATGCGTAGTGT 59.517 34.615 23.20 14.17 0.00 3.55
181 182 6.891624 ACAATTTCTATATGCATGCGTAGTG 58.108 36.000 23.20 17.51 0.00 2.74
182 183 8.777865 ATACAATTTCTATATGCATGCGTAGT 57.222 30.769 23.20 15.21 0.00 2.73
185 186 8.542953 CGATATACAATTTCTATATGCATGCGT 58.457 33.333 18.07 18.07 0.00 5.24
186 187 8.006027 CCGATATACAATTTCTATATGCATGCG 58.994 37.037 14.09 0.00 0.00 4.73
187 188 9.045223 TCCGATATACAATTTCTATATGCATGC 57.955 33.333 11.82 11.82 0.00 4.06
221 222 9.611284 CGCATTGCATTTATTTCTAATAGCTAA 57.389 29.630 9.69 0.00 0.00 3.09
222 223 8.783093 ACGCATTGCATTTATTTCTAATAGCTA 58.217 29.630 9.69 0.00 0.00 3.32
223 224 7.651808 ACGCATTGCATTTATTTCTAATAGCT 58.348 30.769 9.69 0.00 0.00 3.32
224 225 7.061094 GGACGCATTGCATTTATTTCTAATAGC 59.939 37.037 9.69 0.00 0.00 2.97
225 226 8.292448 AGGACGCATTGCATTTATTTCTAATAG 58.708 33.333 9.69 0.00 0.00 1.73
226 227 8.165239 AGGACGCATTGCATTTATTTCTAATA 57.835 30.769 9.69 0.00 0.00 0.98
227 228 7.042797 AGGACGCATTGCATTTATTTCTAAT 57.957 32.000 9.69 0.00 0.00 1.73
228 229 6.449635 AGGACGCATTGCATTTATTTCTAA 57.550 33.333 9.69 0.00 0.00 2.10
229 230 7.561021 TTAGGACGCATTGCATTTATTTCTA 57.439 32.000 9.69 0.00 0.00 2.10
230 231 4.989279 AGGACGCATTGCATTTATTTCT 57.011 36.364 9.69 0.00 0.00 2.52
231 232 6.019881 GGTTTAGGACGCATTGCATTTATTTC 60.020 38.462 9.69 0.00 0.00 2.17
232 233 5.810074 GGTTTAGGACGCATTGCATTTATTT 59.190 36.000 9.69 0.00 0.00 1.40
233 234 5.127031 AGGTTTAGGACGCATTGCATTTATT 59.873 36.000 9.69 0.00 0.00 1.40
234 235 4.644685 AGGTTTAGGACGCATTGCATTTAT 59.355 37.500 9.69 0.00 0.00 1.40
235 236 4.013728 AGGTTTAGGACGCATTGCATTTA 58.986 39.130 9.69 0.00 0.00 1.40
236 237 2.825532 AGGTTTAGGACGCATTGCATTT 59.174 40.909 9.69 0.00 0.00 2.32
237 238 2.446435 AGGTTTAGGACGCATTGCATT 58.554 42.857 9.69 0.00 0.00 3.56
238 239 2.128771 AGGTTTAGGACGCATTGCAT 57.871 45.000 9.69 0.00 0.00 3.96
239 240 1.539388 CAAGGTTTAGGACGCATTGCA 59.461 47.619 9.69 0.00 0.00 4.08
240 241 1.539827 ACAAGGTTTAGGACGCATTGC 59.460 47.619 0.00 0.00 0.00 3.56
241 242 3.074412 AGACAAGGTTTAGGACGCATTG 58.926 45.455 0.00 0.00 0.00 2.82
242 243 3.418684 AGACAAGGTTTAGGACGCATT 57.581 42.857 0.00 0.00 0.00 3.56
243 244 4.755266 ATAGACAAGGTTTAGGACGCAT 57.245 40.909 0.00 0.00 0.00 4.73
244 245 4.250464 CAATAGACAAGGTTTAGGACGCA 58.750 43.478 0.00 0.00 0.00 5.24
245 246 4.092968 CACAATAGACAAGGTTTAGGACGC 59.907 45.833 0.00 0.00 0.00 5.19
246 247 4.630069 CCACAATAGACAAGGTTTAGGACG 59.370 45.833 0.00 0.00 0.00 4.79
247 248 5.801380 TCCACAATAGACAAGGTTTAGGAC 58.199 41.667 0.00 0.00 0.00 3.85
248 249 6.442541 TTCCACAATAGACAAGGTTTAGGA 57.557 37.500 0.00 0.00 0.00 2.94
249 250 6.348213 CGTTTCCACAATAGACAAGGTTTAGG 60.348 42.308 0.00 0.00 0.00 2.69
250 251 6.599437 CGTTTCCACAATAGACAAGGTTTAG 58.401 40.000 0.00 0.00 0.00 1.85
251 252 5.049267 GCGTTTCCACAATAGACAAGGTTTA 60.049 40.000 0.00 0.00 0.00 2.01
252 253 4.261447 GCGTTTCCACAATAGACAAGGTTT 60.261 41.667 0.00 0.00 0.00 3.27
253 254 3.252458 GCGTTTCCACAATAGACAAGGTT 59.748 43.478 0.00 0.00 0.00 3.50
254 255 2.812011 GCGTTTCCACAATAGACAAGGT 59.188 45.455 0.00 0.00 0.00 3.50
255 256 2.811431 TGCGTTTCCACAATAGACAAGG 59.189 45.455 0.00 0.00 0.00 3.61
256 257 3.249799 TGTGCGTTTCCACAATAGACAAG 59.750 43.478 0.00 0.00 42.33 3.16
257 258 3.206964 TGTGCGTTTCCACAATAGACAA 58.793 40.909 0.00 0.00 42.33 3.18
258 259 2.839975 TGTGCGTTTCCACAATAGACA 58.160 42.857 0.00 0.00 42.33 3.41
266 267 6.639279 ACAGTTAAATTTATGTGCGTTTCCAC 59.361 34.615 0.00 0.00 36.28 4.02
267 268 6.638873 CACAGTTAAATTTATGTGCGTTTCCA 59.361 34.615 15.46 0.00 36.91 3.53
268 269 7.033292 CACAGTTAAATTTATGTGCGTTTCC 57.967 36.000 15.46 0.00 36.91 3.13
275 276 9.906660 TTTAGAAGGCACAGTTAAATTTATGTG 57.093 29.630 20.42 20.42 44.58 3.21
276 277 9.908152 GTTTAGAAGGCACAGTTAAATTTATGT 57.092 29.630 0.00 0.00 0.00 2.29
279 280 9.127277 ACAGTTTAGAAGGCACAGTTAAATTTA 57.873 29.630 0.00 0.00 0.00 1.40
280 281 7.920682 CACAGTTTAGAAGGCACAGTTAAATTT 59.079 33.333 0.00 0.00 0.00 1.82
281 282 7.284489 TCACAGTTTAGAAGGCACAGTTAAATT 59.716 33.333 0.00 0.00 0.00 1.82
282 283 6.770785 TCACAGTTTAGAAGGCACAGTTAAAT 59.229 34.615 0.00 0.00 0.00 1.40
283 284 6.037830 GTCACAGTTTAGAAGGCACAGTTAAA 59.962 38.462 0.00 0.00 0.00 1.52
284 285 5.526111 GTCACAGTTTAGAAGGCACAGTTAA 59.474 40.000 0.00 0.00 0.00 2.01
285 286 5.054477 GTCACAGTTTAGAAGGCACAGTTA 58.946 41.667 0.00 0.00 0.00 2.24
286 287 3.877508 GTCACAGTTTAGAAGGCACAGTT 59.122 43.478 0.00 0.00 0.00 3.16
287 288 3.467803 GTCACAGTTTAGAAGGCACAGT 58.532 45.455 0.00 0.00 0.00 3.55
288 289 2.476619 CGTCACAGTTTAGAAGGCACAG 59.523 50.000 0.00 0.00 0.00 3.66
289 290 2.479837 CGTCACAGTTTAGAAGGCACA 58.520 47.619 0.00 0.00 0.00 4.57
290 291 1.798813 CCGTCACAGTTTAGAAGGCAC 59.201 52.381 0.00 0.00 0.00 5.01
291 292 1.689813 TCCGTCACAGTTTAGAAGGCA 59.310 47.619 0.00 0.00 34.05 4.75
292 293 2.338500 CTCCGTCACAGTTTAGAAGGC 58.662 52.381 0.00 0.00 34.05 4.35
293 294 2.353803 CCCTCCGTCACAGTTTAGAAGG 60.354 54.545 0.00 0.00 35.14 3.46
294 295 2.561419 TCCCTCCGTCACAGTTTAGAAG 59.439 50.000 0.00 0.00 0.00 2.85
295 296 2.561419 CTCCCTCCGTCACAGTTTAGAA 59.439 50.000 0.00 0.00 0.00 2.10
296 297 2.168496 CTCCCTCCGTCACAGTTTAGA 58.832 52.381 0.00 0.00 0.00 2.10
297 298 1.893801 ACTCCCTCCGTCACAGTTTAG 59.106 52.381 0.00 0.00 0.00 1.85
298 299 2.005370 ACTCCCTCCGTCACAGTTTA 57.995 50.000 0.00 0.00 0.00 2.01
299 300 2.005370 TACTCCCTCCGTCACAGTTT 57.995 50.000 0.00 0.00 0.00 2.66
300 301 1.893801 CTTACTCCCTCCGTCACAGTT 59.106 52.381 0.00 0.00 0.00 3.16
301 302 1.203025 ACTTACTCCCTCCGTCACAGT 60.203 52.381 0.00 0.00 0.00 3.55
302 303 1.546961 ACTTACTCCCTCCGTCACAG 58.453 55.000 0.00 0.00 0.00 3.66
303 304 1.616865 CAACTTACTCCCTCCGTCACA 59.383 52.381 0.00 0.00 0.00 3.58
304 305 1.891150 TCAACTTACTCCCTCCGTCAC 59.109 52.381 0.00 0.00 0.00 3.67
305 306 2.297698 TCAACTTACTCCCTCCGTCA 57.702 50.000 0.00 0.00 0.00 4.35
306 307 2.223525 CGATCAACTTACTCCCTCCGTC 60.224 54.545 0.00 0.00 0.00 4.79
307 308 1.749634 CGATCAACTTACTCCCTCCGT 59.250 52.381 0.00 0.00 0.00 4.69
308 309 2.022195 TCGATCAACTTACTCCCTCCG 58.978 52.381 0.00 0.00 0.00 4.63
309 310 2.758979 TGTCGATCAACTTACTCCCTCC 59.241 50.000 0.00 0.00 0.00 4.30
310 311 4.451629 TTGTCGATCAACTTACTCCCTC 57.548 45.455 0.00 0.00 0.00 4.30
325 326 1.203052 GGTAATGTCCTCGGTTGTCGA 59.797 52.381 0.00 0.00 46.77 4.20
326 327 1.067425 TGGTAATGTCCTCGGTTGTCG 60.067 52.381 0.00 0.00 40.90 4.35
327 328 2.740447 GTTGGTAATGTCCTCGGTTGTC 59.260 50.000 0.00 0.00 0.00 3.18
328 329 2.551504 GGTTGGTAATGTCCTCGGTTGT 60.552 50.000 0.00 0.00 0.00 3.32
329 330 2.081462 GGTTGGTAATGTCCTCGGTTG 58.919 52.381 0.00 0.00 0.00 3.77
330 331 1.700739 TGGTTGGTAATGTCCTCGGTT 59.299 47.619 0.00 0.00 0.00 4.44
331 332 1.354101 TGGTTGGTAATGTCCTCGGT 58.646 50.000 0.00 0.00 0.00 4.69
332 333 2.483014 TTGGTTGGTAATGTCCTCGG 57.517 50.000 0.00 0.00 0.00 4.63
333 334 5.364778 TGATATTGGTTGGTAATGTCCTCG 58.635 41.667 0.00 0.00 0.00 4.63
334 335 6.483640 GTCTGATATTGGTTGGTAATGTCCTC 59.516 42.308 0.00 0.00 0.00 3.71
335 336 6.357367 GTCTGATATTGGTTGGTAATGTCCT 58.643 40.000 0.00 0.00 0.00 3.85
336 337 5.531287 GGTCTGATATTGGTTGGTAATGTCC 59.469 44.000 0.00 0.00 0.00 4.02
337 338 5.236478 CGGTCTGATATTGGTTGGTAATGTC 59.764 44.000 0.00 0.00 0.00 3.06
353 354 6.573289 GCTTATATCTGTCCATTCGGTCTGAT 60.573 42.308 0.00 0.00 40.39 2.90
356 357 4.021016 GGCTTATATCTGTCCATTCGGTCT 60.021 45.833 0.00 0.00 0.00 3.85
357 358 4.021016 AGGCTTATATCTGTCCATTCGGTC 60.021 45.833 0.00 0.00 0.00 4.79
374 375 8.965819 TCACATGCAATTAATTCTTTAGGCTTA 58.034 29.630 0.00 0.00 0.00 3.09
390 391 7.419204 CACCTTTTTGATTTTTCACATGCAAT 58.581 30.769 0.00 0.00 0.00 3.56
391 392 6.183360 CCACCTTTTTGATTTTTCACATGCAA 60.183 34.615 0.00 0.00 0.00 4.08
392 393 5.296283 CCACCTTTTTGATTTTTCACATGCA 59.704 36.000 0.00 0.00 0.00 3.96
406 407 4.499696 GGTGTTGATCTGTCCACCTTTTTG 60.500 45.833 13.12 0.00 43.21 2.44
496 499 0.973496 ACGGAGGAGAAAGAGAGGGC 60.973 60.000 0.00 0.00 0.00 5.19
562 565 2.281091 CATCTGCAATGGGGCCCT 59.719 61.111 25.93 6.39 0.00 5.19
758 776 3.733443 GAGCTTTCTCTCCATCTCTCC 57.267 52.381 0.00 0.00 36.42 3.71
800 818 0.820226 CAAGCGATGGAGACTGGAGA 59.180 55.000 0.00 0.00 0.00 3.71
801 819 0.534412 ACAAGCGATGGAGACTGGAG 59.466 55.000 0.00 0.00 0.00 3.86
802 820 0.247460 CACAAGCGATGGAGACTGGA 59.753 55.000 0.00 0.00 0.00 3.86
803 821 0.247460 TCACAAGCGATGGAGACTGG 59.753 55.000 0.00 0.00 0.00 4.00
804 822 2.200067 GATCACAAGCGATGGAGACTG 58.800 52.381 0.00 0.00 0.00 3.51
805 823 1.202348 CGATCACAAGCGATGGAGACT 60.202 52.381 0.00 0.00 36.04 3.24
806 824 1.203928 CGATCACAAGCGATGGAGAC 58.796 55.000 0.00 0.00 36.04 3.36
815 833 5.229469 GTGTACATACTACACGATCACAAGC 59.771 44.000 0.00 0.00 38.46 4.01
831 849 0.757935 GGCGGGAGGAGGTGTACATA 60.758 60.000 0.00 0.00 0.00 2.29
897 915 0.896019 AGACGACTGCTAGTGCTGGT 60.896 55.000 0.00 0.00 41.57 4.00
949 967 4.305524 AGAAGGACAAGATGGATGGATCT 58.694 43.478 0.00 0.00 33.91 2.75
974 992 2.542824 GCTAGCTAGCTTGAGGTCGAAG 60.543 54.545 33.71 14.48 45.62 3.79
987 1005 3.062639 CACGAACCATTTGTGCTAGCTAG 59.937 47.826 16.84 16.84 38.16 3.42
988 1006 3.000041 CACGAACCATTTGTGCTAGCTA 59.000 45.455 17.23 1.87 38.16 3.32
1020 1038 7.772292 AGAACATGCACAGATTAGTACATCAAT 59.228 33.333 0.00 0.00 0.00 2.57
1021 1039 7.105588 AGAACATGCACAGATTAGTACATCAA 58.894 34.615 0.00 0.00 0.00 2.57
1022 1040 6.643388 AGAACATGCACAGATTAGTACATCA 58.357 36.000 0.00 0.00 0.00 3.07
1023 1041 7.404985 CAAGAACATGCACAGATTAGTACATC 58.595 38.462 0.00 0.00 0.00 3.06
1052 1072 8.898761 ACACACAGTTAATGAGACACATTTAAA 58.101 29.630 3.36 0.00 45.60 1.52
1324 1357 3.598715 TGACGACGTTGGCGGACT 61.599 61.111 7.90 0.00 43.45 3.85
2060 2111 4.973055 TTCCACGGGTTCGGTGCG 62.973 66.667 0.00 0.00 41.39 5.34
2132 2183 4.430765 ATCGTCGTCGCCCACACC 62.431 66.667 0.00 0.00 36.96 4.16
2168 2219 0.538584 AGAAGGTGATCATCTGCGCA 59.461 50.000 9.83 10.98 0.00 6.09
2226 2277 2.279784 GGCTGGGATCTCGAAGCG 60.280 66.667 0.00 0.00 36.50 4.68
2255 2306 1.959226 GGCGCCAACGAAGAAGACA 60.959 57.895 24.80 0.00 43.93 3.41
2306 2357 0.531974 TTCGGCATAGCGGGATGAAC 60.532 55.000 1.05 0.00 0.00 3.18
2384 2435 0.947660 CGACCATGCCGATGATGGAG 60.948 60.000 12.59 4.57 42.81 3.86
2480 2531 6.980716 AGGAACTGCGGAATCAGCATGAAT 62.981 45.833 8.73 0.00 45.83 2.57
2525 2576 0.811616 GCTGCCCCGTGTAGATGAAG 60.812 60.000 0.00 0.00 0.00 3.02
2597 2648 0.251386 AGAGCGTGGTGAGGAAGAGA 60.251 55.000 0.00 0.00 0.00 3.10
2672 2723 1.221840 GATGGTGTCACCGAGCCAT 59.778 57.895 17.27 4.59 42.58 4.40
2706 2757 3.181474 GCGAGGAGCCAGTAGAAGTAATT 60.181 47.826 0.00 0.00 40.81 1.40
2739 2790 2.525284 TAGGCGGCTAGGTTGAGGGT 62.525 60.000 15.70 0.00 0.00 4.34
2742 2793 1.043673 AGGTAGGCGGCTAGGTTGAG 61.044 60.000 20.35 0.00 0.00 3.02
2750 2801 2.210711 GCATAGGAGGTAGGCGGCT 61.211 63.158 18.33 18.33 0.00 5.52
2828 2879 0.528684 GCTAGCATTTCTCGTCGGCT 60.529 55.000 10.63 0.00 38.55 5.52
2848 2899 1.651987 ATGAACGATAACCTGCACCG 58.348 50.000 0.00 0.00 0.00 4.94
2857 2908 5.423886 TGCACATCCAGTAATGAACGATAA 58.576 37.500 0.00 0.00 0.00 1.75
2886 2941 1.677637 GACTCCCAGACCGGATGGAC 61.678 65.000 25.82 13.37 40.51 4.02
2902 2957 1.035932 GGAAGCTGCATGCATGGACT 61.036 55.000 27.34 20.01 45.94 3.85
2993 3048 3.557054 CGGTCCAGAAACATTGGAGAAGA 60.557 47.826 0.00 0.00 45.00 2.87
3039 3095 5.294060 TGCGACCCTATAATAAAACGGAAAC 59.706 40.000 0.00 0.00 0.00 2.78
3059 3115 2.862700 CGTTCGTCGGATATTGCGA 58.137 52.632 0.00 0.00 38.05 5.10
3069 3125 0.863144 AAATGACCAACCGTTCGTCG 59.137 50.000 4.81 0.00 39.52 5.12
3148 3204 6.348050 GGTGACAAATGCTGTTGTTTGAAAAA 60.348 34.615 6.97 0.00 41.78 1.94
3149 3205 5.121454 GGTGACAAATGCTGTTGTTTGAAAA 59.879 36.000 6.97 0.00 41.78 2.29
3150 3206 4.629200 GGTGACAAATGCTGTTGTTTGAAA 59.371 37.500 6.97 0.00 41.78 2.69
3153 3215 3.784338 AGGTGACAAATGCTGTTGTTTG 58.216 40.909 6.97 0.00 41.78 2.93
3155 3217 2.362077 GGAGGTGACAAATGCTGTTGTT 59.638 45.455 6.97 0.00 41.78 2.83
3158 3220 2.664402 AGGAGGTGACAAATGCTGTT 57.336 45.000 0.00 0.00 38.84 3.16
3163 3225 7.607991 ACTTTATCAAGTAGGAGGTGACAAATG 59.392 37.037 0.00 0.00 41.81 2.32
3169 3231 5.488341 GCAACTTTATCAAGTAGGAGGTGA 58.512 41.667 0.00 0.00 42.89 4.02
3172 3234 4.636206 GTGGCAACTTTATCAAGTAGGAGG 59.364 45.833 0.00 0.00 42.89 4.30
3268 3330 8.663167 TGATAACCATGATCCTCAAGATGTTAT 58.337 33.333 0.00 0.00 34.42 1.89
3271 3333 6.126681 TGTGATAACCATGATCCTCAAGATGT 60.127 38.462 0.00 0.00 34.42 3.06
3337 3399 6.209391 ACTTTTGGAAGATATCAAGTTGGTGG 59.791 38.462 5.32 0.00 36.69 4.61
3361 3423 2.681344 ACTGGTCACCGTCTTTCAAAAC 59.319 45.455 0.00 0.00 0.00 2.43
3476 3538 4.215613 AGAAGGACAATTTGCCGTTAAGAC 59.784 41.667 0.00 0.00 0.00 3.01
3497 3559 3.136443 CCATATGTAGGCAACCAGGAAGA 59.864 47.826 1.24 0.00 37.17 2.87
3498 3560 3.480470 CCATATGTAGGCAACCAGGAAG 58.520 50.000 1.24 0.00 37.17 3.46
3499 3561 2.174639 CCCATATGTAGGCAACCAGGAA 59.825 50.000 1.24 0.00 37.17 3.36
3661 3757 9.783081 ATATACATGTTGATCTTCATTACTGCA 57.217 29.630 2.30 0.00 0.00 4.41
3668 3764 8.944029 GCAGCTTATATACATGTTGATCTTCAT 58.056 33.333 2.30 0.00 0.00 2.57
3669 3765 7.933033 TGCAGCTTATATACATGTTGATCTTCA 59.067 33.333 2.30 0.00 0.00 3.02
3670 3766 8.315391 TGCAGCTTATATACATGTTGATCTTC 57.685 34.615 2.30 0.00 0.00 2.87
3671 3767 7.935755 ACTGCAGCTTATATACATGTTGATCTT 59.064 33.333 15.27 0.00 0.00 2.40
3672 3768 7.448420 ACTGCAGCTTATATACATGTTGATCT 58.552 34.615 15.27 0.00 0.00 2.75
3673 3769 7.664082 ACTGCAGCTTATATACATGTTGATC 57.336 36.000 15.27 0.00 0.00 2.92
3674 3770 9.730705 ATTACTGCAGCTTATATACATGTTGAT 57.269 29.630 15.27 0.05 0.00 2.57
3675 3771 8.992073 CATTACTGCAGCTTATATACATGTTGA 58.008 33.333 15.27 0.00 0.00 3.18
3676 3772 8.992073 TCATTACTGCAGCTTATATACATGTTG 58.008 33.333 15.27 0.00 0.00 3.33
3677 3773 9.212641 CTCATTACTGCAGCTTATATACATGTT 57.787 33.333 15.27 0.00 0.00 2.71
3678 3774 7.332926 GCTCATTACTGCAGCTTATATACATGT 59.667 37.037 15.27 2.69 0.00 3.21
3679 3775 7.548427 AGCTCATTACTGCAGCTTATATACATG 59.452 37.037 15.27 0.54 40.77 3.21
3680 3776 7.619050 AGCTCATTACTGCAGCTTATATACAT 58.381 34.615 15.27 0.00 40.77 2.29
3681 3777 6.997655 AGCTCATTACTGCAGCTTATATACA 58.002 36.000 15.27 0.00 40.77 2.29
3682 3778 8.462811 TCTAGCTCATTACTGCAGCTTATATAC 58.537 37.037 15.27 0.00 40.77 1.47
3683 3779 8.581253 TCTAGCTCATTACTGCAGCTTATATA 57.419 34.615 15.27 0.00 40.77 0.86
3684 3780 7.178274 ACTCTAGCTCATTACTGCAGCTTATAT 59.822 37.037 15.27 0.00 40.77 0.86
3685 3781 6.491745 ACTCTAGCTCATTACTGCAGCTTATA 59.508 38.462 15.27 0.00 40.77 0.98
3686 3782 5.304101 ACTCTAGCTCATTACTGCAGCTTAT 59.696 40.000 15.27 1.43 40.77 1.73
3687 3783 4.646945 ACTCTAGCTCATTACTGCAGCTTA 59.353 41.667 15.27 0.00 40.77 3.09
3688 3784 3.450457 ACTCTAGCTCATTACTGCAGCTT 59.550 43.478 15.27 0.00 40.77 3.74
3689 3785 3.030291 ACTCTAGCTCATTACTGCAGCT 58.970 45.455 15.27 6.61 45.59 4.24
3690 3786 3.451141 ACTCTAGCTCATTACTGCAGC 57.549 47.619 15.27 0.00 0.00 5.25
3691 3787 6.657117 TCCTATACTCTAGCTCATTACTGCAG 59.343 42.308 13.48 13.48 0.00 4.41
3813 3909 8.765219 ACATTATTTTATGTATGCTGTCGTCTC 58.235 33.333 0.00 0.00 36.99 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.