Multiple sequence alignment - TraesCS1A01G031200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G031200 chr1A 100.000 4769 0 0 1 4769 14503728 14508496 0.000000e+00 8807.0
1 TraesCS1A01G031200 chr1A 87.500 72 9 0 3344 3415 117247554 117247625 3.060000e-12 84.2
2 TraesCS1A01G031200 chr1D 93.773 2714 125 22 1426 4114 13029685 13032379 0.000000e+00 4036.0
3 TraesCS1A01G031200 chr1D 91.696 566 20 7 4221 4769 13032559 13033114 0.000000e+00 760.0
4 TraesCS1A01G031200 chr1D 85.683 461 27 11 936 1378 13029168 13029607 2.620000e-122 449.0
5 TraesCS1A01G031200 chr1D 85.507 138 5 10 703 832 13028995 13029125 3.870000e-26 130.0
6 TraesCS1A01G031200 chr1D 95.455 66 2 1 481 545 13028748 13028813 2.350000e-18 104.0
7 TraesCS1A01G031200 chr1D 88.235 68 5 1 638 702 13028903 13028970 1.420000e-10 78.7
8 TraesCS1A01G031200 chr1B 89.699 1961 147 27 1410 3326 18422265 18420316 0.000000e+00 2451.0
9 TraesCS1A01G031200 chr1B 89.693 1106 63 12 3068 4171 18420445 18419389 0.000000e+00 1363.0
10 TraesCS1A01G031200 chr1B 88.421 475 26 10 4224 4675 18419260 18418792 3.250000e-151 545.0
11 TraesCS1A01G031200 chr1B 79.668 482 37 22 754 1206 18422971 18422522 1.680000e-74 291.0
12 TraesCS1A01G031200 chr1B 89.080 174 17 1 1240 1411 18422523 18422350 1.040000e-51 215.0
13 TraesCS1A01G031200 chr1B 83.019 106 7 1 4583 4677 18416204 18416099 8.500000e-13 86.1
14 TraesCS1A01G031200 chr1B 86.111 72 10 0 3344 3415 169696803 169696874 1.420000e-10 78.7
15 TraesCS1A01G031200 chr1B 77.311 119 21 5 3349 3462 687276743 687276626 1.110000e-06 65.8
16 TraesCS1A01G031200 chr6A 85.926 405 35 12 2567 2958 585349303 585349698 3.430000e-111 412.0
17 TraesCS1A01G031200 chr3D 81.013 316 56 4 3333 3646 609739093 609738780 1.020000e-61 248.0
18 TraesCS1A01G031200 chr3B 81.013 316 56 4 3333 3646 820902639 820902326 1.020000e-61 248.0
19 TraesCS1A01G031200 chr3A 80.380 316 58 3 3333 3646 743377888 743377575 2.220000e-58 237.0
20 TraesCS1A01G031200 chr7A 80.063 316 59 3 3333 3646 709732745 709732432 1.030000e-56 231.0
21 TraesCS1A01G031200 chr7A 94.737 133 6 1 72 203 517575979 517576111 6.260000e-49 206.0
22 TraesCS1A01G031200 chr7A 93.284 134 8 1 71 203 285693735 285693602 3.770000e-46 196.0
23 TraesCS1A01G031200 chr4A 96.454 141 4 1 64 203 106343646 106343786 1.030000e-56 231.0
24 TraesCS1A01G031200 chr4A 93.233 133 8 1 72 203 560316302 560316434 1.350000e-45 195.0
25 TraesCS1A01G031200 chrUn 92.701 137 7 3 69 203 88818786 88818651 1.350000e-45 195.0
26 TraesCS1A01G031200 chr5A 90.909 143 12 1 64 205 126692735 126692593 1.750000e-44 191.0
27 TraesCS1A01G031200 chr7D 89.032 155 12 5 51 203 579632615 579632766 2.270000e-43 187.0
28 TraesCS1A01G031200 chr7D 83.333 144 24 0 2469 2612 617018930 617018787 2.990000e-27 134.0
29 TraesCS1A01G031200 chr4D 89.333 150 13 3 56 203 80148302 80148154 8.150000e-43 185.0
30 TraesCS1A01G031200 chr5B 88.235 153 17 1 54 205 691457784 691457632 1.050000e-41 182.0
31 TraesCS1A01G031200 chr7B 83.333 144 24 0 2469 2612 711062819 711062676 2.990000e-27 134.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G031200 chr1A 14503728 14508496 4768 False 8807.000000 8807 100.000000 1 4769 1 chr1A.!!$F1 4768
1 TraesCS1A01G031200 chr1D 13028748 13033114 4366 False 926.283333 4036 90.058167 481 4769 6 chr1D.!!$F1 4288
2 TraesCS1A01G031200 chr1B 18416099 18422971 6872 True 825.183333 2451 86.596667 754 4677 6 chr1B.!!$R2 3923

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
352 353 0.029567 TGGCGGTAAGTTTTGCGTTG 59.970 50.0 0.00 0.00 0.00 4.10 F
354 355 0.029700 GCGGTAAGTTTTGCGTTGGT 59.970 50.0 0.00 0.00 0.00 3.67 F
377 378 0.106918 ATCTTTTGCCCCGCGGATAA 60.107 50.0 30.73 15.69 0.00 1.75 F
922 1024 0.107945 GGAGGTCTGCTCGCTTGATT 60.108 55.0 0.00 0.00 0.00 2.57 F
2747 3017 0.394762 TTGCCCATGGAGCAGCTAAG 60.395 55.0 22.00 1.87 42.17 2.18 F
3260 3666 0.593128 ACCTGAAACGTGCTTGCATC 59.407 50.0 0.00 0.00 0.00 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1352 1489 1.493022 ACTGAACCTGCTGTTTACCCA 59.507 47.619 0.00 0.00 37.29 4.51 R
1539 1763 1.881973 GTGGCTCAACAATCTGAAGCA 59.118 47.619 0.00 0.00 0.00 3.91 R
1655 1886 2.113860 TCCTTACACATGAAGCAGCC 57.886 50.000 0.00 0.00 0.00 4.85 R
2885 3155 0.169230 GCGTGACTGTCAGATCGACT 59.831 55.000 19.38 0.95 45.60 4.18 R
3750 4157 0.318107 GTCAAACCGGTCTCGACGAA 60.318 55.000 8.04 0.00 39.00 3.85 R
4457 4986 1.820481 GTCGACCGAGGAGGAGGAG 60.820 68.421 3.51 0.00 45.00 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.102113 GCCAGGTCAATTGGTGCT 57.898 55.556 5.42 0.00 38.02 4.40
18 19 3.264574 GCCAGGTCAATTGGTGCTA 57.735 52.632 5.42 0.00 38.02 3.49
19 20 1.767759 GCCAGGTCAATTGGTGCTAT 58.232 50.000 5.42 0.00 38.02 2.97
20 21 1.678101 GCCAGGTCAATTGGTGCTATC 59.322 52.381 5.42 0.00 38.02 2.08
21 22 2.945440 GCCAGGTCAATTGGTGCTATCA 60.945 50.000 5.42 0.00 38.02 2.15
22 23 3.559069 CCAGGTCAATTGGTGCTATCAT 58.441 45.455 5.42 0.00 0.00 2.45
23 24 3.317149 CCAGGTCAATTGGTGCTATCATG 59.683 47.826 5.42 0.00 0.00 3.07
24 25 2.954318 AGGTCAATTGGTGCTATCATGC 59.046 45.455 5.42 0.00 0.00 4.06
25 26 2.035066 GGTCAATTGGTGCTATCATGCC 59.965 50.000 5.42 0.00 0.00 4.40
26 27 2.954318 GTCAATTGGTGCTATCATGCCT 59.046 45.455 5.42 0.00 0.00 4.75
27 28 4.136796 GTCAATTGGTGCTATCATGCCTA 58.863 43.478 5.42 0.00 0.00 3.93
28 29 4.214971 GTCAATTGGTGCTATCATGCCTAG 59.785 45.833 5.42 0.00 0.00 3.02
29 30 4.102996 TCAATTGGTGCTATCATGCCTAGA 59.897 41.667 5.42 0.00 0.00 2.43
30 31 3.758755 TTGGTGCTATCATGCCTAGAG 57.241 47.619 6.38 0.00 0.00 2.43
31 32 2.962859 TGGTGCTATCATGCCTAGAGA 58.037 47.619 6.38 0.00 0.00 3.10
32 33 2.896044 TGGTGCTATCATGCCTAGAGAG 59.104 50.000 6.38 0.00 0.00 3.20
33 34 2.896685 GGTGCTATCATGCCTAGAGAGT 59.103 50.000 6.38 0.00 0.00 3.24
34 35 3.305950 GGTGCTATCATGCCTAGAGAGTG 60.306 52.174 6.38 0.00 0.00 3.51
35 36 2.896044 TGCTATCATGCCTAGAGAGTGG 59.104 50.000 6.38 0.00 0.00 4.00
36 37 2.896685 GCTATCATGCCTAGAGAGTGGT 59.103 50.000 6.38 0.00 0.00 4.16
37 38 3.323403 GCTATCATGCCTAGAGAGTGGTT 59.677 47.826 6.38 0.00 0.00 3.67
38 39 4.560513 GCTATCATGCCTAGAGAGTGGTTC 60.561 50.000 6.38 0.00 0.00 3.62
39 40 3.107402 TCATGCCTAGAGAGTGGTTCT 57.893 47.619 0.00 0.00 39.43 3.01
52 53 4.691216 AGAGTGGTTCTCAAAACTTATCGC 59.309 41.667 0.00 0.00 44.98 4.58
53 54 3.751698 AGTGGTTCTCAAAACTTATCGCC 59.248 43.478 0.00 0.00 0.00 5.54
54 55 3.500680 GTGGTTCTCAAAACTTATCGCCA 59.499 43.478 0.00 0.00 0.00 5.69
55 56 4.156008 GTGGTTCTCAAAACTTATCGCCAT 59.844 41.667 0.00 0.00 0.00 4.40
56 57 4.155826 TGGTTCTCAAAACTTATCGCCATG 59.844 41.667 0.00 0.00 0.00 3.66
57 58 4.156008 GGTTCTCAAAACTTATCGCCATGT 59.844 41.667 0.00 0.00 0.00 3.21
58 59 5.335661 GGTTCTCAAAACTTATCGCCATGTT 60.336 40.000 0.00 0.00 0.00 2.71
59 60 5.957842 TCTCAAAACTTATCGCCATGTTT 57.042 34.783 0.00 0.00 34.59 2.83
60 61 6.325919 TCTCAAAACTTATCGCCATGTTTT 57.674 33.333 0.00 0.00 41.44 2.43
61 62 6.744112 TCTCAAAACTTATCGCCATGTTTTT 58.256 32.000 0.00 0.00 39.59 1.94
82 83 5.779529 TTTTTGAGTACTACTCCGTCTGT 57.220 39.130 12.79 0.00 44.44 3.41
83 84 5.779529 TTTTGAGTACTACTCCGTCTGTT 57.220 39.130 12.79 0.00 44.44 3.16
84 85 5.368256 TTTGAGTACTACTCCGTCTGTTC 57.632 43.478 12.79 0.00 44.44 3.18
85 86 3.341823 TGAGTACTACTCCGTCTGTTCC 58.658 50.000 12.79 0.00 44.44 3.62
86 87 3.008813 TGAGTACTACTCCGTCTGTTCCT 59.991 47.826 12.79 0.00 44.44 3.36
87 88 4.223700 TGAGTACTACTCCGTCTGTTCCTA 59.776 45.833 12.79 0.00 44.44 2.94
88 89 5.171339 AGTACTACTCCGTCTGTTCCTAA 57.829 43.478 0.00 0.00 0.00 2.69
89 90 5.564550 AGTACTACTCCGTCTGTTCCTAAA 58.435 41.667 0.00 0.00 0.00 1.85
90 91 6.186234 AGTACTACTCCGTCTGTTCCTAAAT 58.814 40.000 0.00 0.00 0.00 1.40
91 92 7.341805 AGTACTACTCCGTCTGTTCCTAAATA 58.658 38.462 0.00 0.00 0.00 1.40
92 93 7.997803 AGTACTACTCCGTCTGTTCCTAAATAT 59.002 37.037 0.00 0.00 0.00 1.28
93 94 7.657023 ACTACTCCGTCTGTTCCTAAATATT 57.343 36.000 0.00 0.00 0.00 1.28
94 95 8.075761 ACTACTCCGTCTGTTCCTAAATATTT 57.924 34.615 5.89 5.89 0.00 1.40
95 96 7.980099 ACTACTCCGTCTGTTCCTAAATATTTG 59.020 37.037 11.05 1.40 0.00 2.32
96 97 6.708285 ACTCCGTCTGTTCCTAAATATTTGT 58.292 36.000 11.05 0.00 0.00 2.83
97 98 7.166167 ACTCCGTCTGTTCCTAAATATTTGTT 58.834 34.615 11.05 0.00 0.00 2.83
98 99 7.664318 ACTCCGTCTGTTCCTAAATATTTGTTT 59.336 33.333 11.05 0.00 0.00 2.83
99 100 8.398878 TCCGTCTGTTCCTAAATATTTGTTTT 57.601 30.769 11.05 0.00 0.00 2.43
100 101 8.852135 TCCGTCTGTTCCTAAATATTTGTTTTT 58.148 29.630 11.05 0.00 0.00 1.94
132 133 9.922305 GTTTTAAATGATGACTACATACAGAGC 57.078 33.333 0.00 0.00 36.82 4.09
133 134 7.930513 TTAAATGATGACTACATACAGAGCG 57.069 36.000 0.00 0.00 36.82 5.03
134 135 5.774498 AATGATGACTACATACAGAGCGA 57.226 39.130 0.00 0.00 36.82 4.93
135 136 5.774498 ATGATGACTACATACAGAGCGAA 57.226 39.130 0.00 0.00 36.82 4.70
136 137 5.576447 TGATGACTACATACAGAGCGAAA 57.424 39.130 0.00 0.00 36.82 3.46
137 138 6.149129 TGATGACTACATACAGAGCGAAAT 57.851 37.500 0.00 0.00 36.82 2.17
138 139 5.979517 TGATGACTACATACAGAGCGAAATG 59.020 40.000 0.00 0.00 36.82 2.32
139 140 5.576447 TGACTACATACAGAGCGAAATGA 57.424 39.130 0.00 0.00 0.00 2.57
140 141 5.582550 TGACTACATACAGAGCGAAATGAG 58.417 41.667 0.00 0.00 0.00 2.90
141 142 5.125578 TGACTACATACAGAGCGAAATGAGT 59.874 40.000 0.00 0.00 0.00 3.41
142 143 5.344066 ACTACATACAGAGCGAAATGAGTG 58.656 41.667 0.00 0.00 0.00 3.51
143 144 4.456280 ACATACAGAGCGAAATGAGTGA 57.544 40.909 0.00 0.00 0.00 3.41
144 145 4.820897 ACATACAGAGCGAAATGAGTGAA 58.179 39.130 0.00 0.00 0.00 3.18
145 146 5.423015 ACATACAGAGCGAAATGAGTGAAT 58.577 37.500 0.00 0.00 0.00 2.57
146 147 5.521735 ACATACAGAGCGAAATGAGTGAATC 59.478 40.000 0.00 0.00 0.00 2.52
147 148 4.199432 ACAGAGCGAAATGAGTGAATCT 57.801 40.909 0.00 0.00 0.00 2.40
148 149 5.330455 ACAGAGCGAAATGAGTGAATCTA 57.670 39.130 0.00 0.00 0.00 1.98
149 150 5.911752 ACAGAGCGAAATGAGTGAATCTAT 58.088 37.500 0.00 0.00 0.00 1.98
150 151 7.043961 ACAGAGCGAAATGAGTGAATCTATA 57.956 36.000 0.00 0.00 0.00 1.31
151 152 6.920758 ACAGAGCGAAATGAGTGAATCTATAC 59.079 38.462 0.00 0.00 0.00 1.47
152 153 7.144661 CAGAGCGAAATGAGTGAATCTATACT 58.855 38.462 0.00 0.00 0.00 2.12
153 154 7.651304 CAGAGCGAAATGAGTGAATCTATACTT 59.349 37.037 0.00 0.00 0.00 2.24
154 155 7.865385 AGAGCGAAATGAGTGAATCTATACTTC 59.135 37.037 0.00 0.00 0.00 3.01
155 156 7.492524 AGCGAAATGAGTGAATCTATACTTCA 58.507 34.615 0.00 0.00 0.00 3.02
156 157 7.981789 AGCGAAATGAGTGAATCTATACTTCAA 59.018 33.333 0.00 0.00 34.59 2.69
157 158 8.604035 GCGAAATGAGTGAATCTATACTTCAAA 58.396 33.333 0.00 0.00 34.59 2.69
184 185 7.956328 ATGTCTATATACATCCGTATGTGGT 57.044 36.000 3.56 0.00 45.99 4.16
185 186 7.153217 TGTCTATATACATCCGTATGTGGTG 57.847 40.000 3.56 0.00 45.99 4.17
186 187 6.943718 TGTCTATATACATCCGTATGTGGTGA 59.056 38.462 3.56 0.00 45.99 4.02
187 188 7.094506 TGTCTATATACATCCGTATGTGGTGAC 60.095 40.741 3.56 5.93 45.99 3.67
188 189 3.746045 ATACATCCGTATGTGGTGACC 57.254 47.619 3.56 0.00 45.99 4.02
189 190 1.271856 ACATCCGTATGTGGTGACCA 58.728 50.000 0.00 0.00 44.79 4.02
190 191 1.837439 ACATCCGTATGTGGTGACCAT 59.163 47.619 7.94 0.00 44.79 3.55
191 192 2.238646 ACATCCGTATGTGGTGACCATT 59.761 45.455 7.94 0.86 44.79 3.16
192 193 3.278574 CATCCGTATGTGGTGACCATTT 58.721 45.455 7.94 0.45 35.28 2.32
193 194 2.705730 TCCGTATGTGGTGACCATTTG 58.294 47.619 7.94 0.00 35.28 2.32
194 195 2.303311 TCCGTATGTGGTGACCATTTGA 59.697 45.455 7.94 0.00 35.28 2.69
195 196 3.078097 CCGTATGTGGTGACCATTTGAA 58.922 45.455 7.94 0.00 35.28 2.69
196 197 3.504134 CCGTATGTGGTGACCATTTGAAA 59.496 43.478 7.94 0.00 35.28 2.69
197 198 4.157656 CCGTATGTGGTGACCATTTGAAAT 59.842 41.667 7.94 0.00 35.28 2.17
198 199 5.331902 CGTATGTGGTGACCATTTGAAATC 58.668 41.667 7.94 0.00 35.28 2.17
199 200 5.123820 CGTATGTGGTGACCATTTGAAATCT 59.876 40.000 7.94 0.00 35.28 2.40
200 201 5.649782 ATGTGGTGACCATTTGAAATCTC 57.350 39.130 7.94 0.00 35.28 2.75
201 202 4.728772 TGTGGTGACCATTTGAAATCTCT 58.271 39.130 7.94 0.00 35.28 3.10
202 203 5.875224 TGTGGTGACCATTTGAAATCTCTA 58.125 37.500 7.94 0.00 35.28 2.43
203 204 6.303054 TGTGGTGACCATTTGAAATCTCTAA 58.697 36.000 7.94 0.00 35.28 2.10
204 205 6.775142 TGTGGTGACCATTTGAAATCTCTAAA 59.225 34.615 7.94 0.00 35.28 1.85
205 206 7.451255 TGTGGTGACCATTTGAAATCTCTAAAT 59.549 33.333 7.94 0.00 35.28 1.40
206 207 8.956426 GTGGTGACCATTTGAAATCTCTAAATA 58.044 33.333 7.94 0.00 35.28 1.40
207 208 8.956426 TGGTGACCATTTGAAATCTCTAAATAC 58.044 33.333 0.00 0.00 0.00 1.89
208 209 8.122952 GGTGACCATTTGAAATCTCTAAATACG 58.877 37.037 0.00 0.00 0.00 3.06
209 210 8.122952 GTGACCATTTGAAATCTCTAAATACGG 58.877 37.037 0.00 0.00 0.00 4.02
210 211 8.044309 TGACCATTTGAAATCTCTAAATACGGA 58.956 33.333 0.00 0.00 0.00 4.69
211 212 8.438676 ACCATTTGAAATCTCTAAATACGGAG 57.561 34.615 0.00 0.00 0.00 4.63
212 213 7.499232 ACCATTTGAAATCTCTAAATACGGAGG 59.501 37.037 0.00 0.00 0.00 4.30
213 214 7.041098 CCATTTGAAATCTCTAAATACGGAGGG 60.041 40.741 0.00 0.00 0.00 4.30
214 215 6.801718 TTGAAATCTCTAAATACGGAGGGA 57.198 37.500 0.00 0.00 0.00 4.20
215 216 6.406692 TGAAATCTCTAAATACGGAGGGAG 57.593 41.667 0.00 0.00 0.00 4.30
216 217 5.304614 TGAAATCTCTAAATACGGAGGGAGG 59.695 44.000 0.00 0.00 0.00 4.30
217 218 3.240310 TCTCTAAATACGGAGGGAGGG 57.760 52.381 0.00 0.00 0.00 4.30
218 219 2.787625 TCTCTAAATACGGAGGGAGGGA 59.212 50.000 0.00 0.00 0.00 4.20
219 220 3.158676 CTCTAAATACGGAGGGAGGGAG 58.841 54.545 0.00 0.00 0.00 4.30
220 221 2.517127 TCTAAATACGGAGGGAGGGAGT 59.483 50.000 0.00 0.00 0.00 3.85
221 222 3.723681 TCTAAATACGGAGGGAGGGAGTA 59.276 47.826 0.00 0.00 0.00 2.59
222 223 2.679429 AATACGGAGGGAGGGAGTAG 57.321 55.000 0.00 0.00 0.00 2.57
223 224 1.532038 ATACGGAGGGAGGGAGTAGT 58.468 55.000 0.00 0.00 0.00 2.73
224 225 2.196742 TACGGAGGGAGGGAGTAGTA 57.803 55.000 0.00 0.00 0.00 1.82
225 226 1.532038 ACGGAGGGAGGGAGTAGTAT 58.468 55.000 0.00 0.00 0.00 2.12
226 227 2.711174 ACGGAGGGAGGGAGTAGTATA 58.289 52.381 0.00 0.00 0.00 1.47
227 228 2.374839 ACGGAGGGAGGGAGTAGTATAC 59.625 54.545 0.00 0.00 43.47 1.47
228 229 2.374504 CGGAGGGAGGGAGTAGTATACA 59.625 54.545 5.50 0.00 46.26 2.29
229 230 3.181436 CGGAGGGAGGGAGTAGTATACAA 60.181 52.174 5.50 0.00 46.26 2.41
230 231 4.409187 GGAGGGAGGGAGTAGTATACAAG 58.591 52.174 5.50 0.00 46.26 3.16
231 232 4.106019 GGAGGGAGGGAGTAGTATACAAGA 59.894 50.000 5.50 0.00 46.26 3.02
232 233 5.399958 GGAGGGAGGGAGTAGTATACAAGAA 60.400 48.000 5.50 0.00 46.26 2.52
233 234 6.101274 AGGGAGGGAGTAGTATACAAGAAA 57.899 41.667 5.50 0.00 46.26 2.52
234 235 6.509386 AGGGAGGGAGTAGTATACAAGAAAA 58.491 40.000 5.50 0.00 46.26 2.29
235 236 6.383436 AGGGAGGGAGTAGTATACAAGAAAAC 59.617 42.308 5.50 0.00 46.26 2.43
236 237 6.155737 GGGAGGGAGTAGTATACAAGAAAACA 59.844 42.308 5.50 0.00 46.26 2.83
237 238 7.147532 GGGAGGGAGTAGTATACAAGAAAACAT 60.148 40.741 5.50 0.00 46.26 2.71
238 239 8.921205 GGAGGGAGTAGTATACAAGAAAACATA 58.079 37.037 5.50 0.00 46.26 2.29
239 240 9.968870 GAGGGAGTAGTATACAAGAAAACATAG 57.031 37.037 5.50 0.00 46.26 2.23
240 241 8.422566 AGGGAGTAGTATACAAGAAAACATAGC 58.577 37.037 5.50 0.00 46.26 2.97
241 242 7.381678 GGGAGTAGTATACAAGAAAACATAGCG 59.618 40.741 5.50 0.00 46.26 4.26
242 243 7.381678 GGAGTAGTATACAAGAAAACATAGCGG 59.618 40.741 5.50 0.00 46.26 5.52
243 244 5.986004 AGTATACAAGAAAACATAGCGGC 57.014 39.130 5.50 0.00 0.00 6.53
244 245 5.424757 AGTATACAAGAAAACATAGCGGCA 58.575 37.500 5.50 0.00 0.00 5.69
245 246 6.055588 AGTATACAAGAAAACATAGCGGCAT 58.944 36.000 5.50 0.00 0.00 4.40
246 247 5.835113 ATACAAGAAAACATAGCGGCATT 57.165 34.783 1.45 0.00 0.00 3.56
247 248 4.096732 ACAAGAAAACATAGCGGCATTC 57.903 40.909 1.45 0.00 0.00 2.67
248 249 3.758554 ACAAGAAAACATAGCGGCATTCT 59.241 39.130 1.45 0.00 0.00 2.40
249 250 4.142600 ACAAGAAAACATAGCGGCATTCTC 60.143 41.667 1.45 0.00 0.00 2.87
250 251 3.609853 AGAAAACATAGCGGCATTCTCA 58.390 40.909 1.45 0.00 0.00 3.27
251 252 4.009675 AGAAAACATAGCGGCATTCTCAA 58.990 39.130 1.45 0.00 0.00 3.02
252 253 4.458989 AGAAAACATAGCGGCATTCTCAAA 59.541 37.500 1.45 0.00 0.00 2.69
253 254 4.782019 AAACATAGCGGCATTCTCAAAA 57.218 36.364 1.45 0.00 0.00 2.44
254 255 4.782019 AACATAGCGGCATTCTCAAAAA 57.218 36.364 1.45 0.00 0.00 1.94
276 277 8.641499 AAAAACAATAATAATACGGGCACATG 57.359 30.769 0.00 0.00 0.00 3.21
277 278 7.575414 AAACAATAATAATACGGGCACATGA 57.425 32.000 0.00 0.00 0.00 3.07
278 279 6.801539 ACAATAATAATACGGGCACATGAG 57.198 37.500 0.00 0.00 0.00 2.90
279 280 5.181245 ACAATAATAATACGGGCACATGAGC 59.819 40.000 6.57 6.57 0.00 4.26
280 281 1.795768 ATAATACGGGCACATGAGCG 58.204 50.000 9.09 0.00 34.64 5.03
281 282 0.747852 TAATACGGGCACATGAGCGA 59.252 50.000 9.09 0.00 34.64 4.93
282 283 0.106708 AATACGGGCACATGAGCGAT 59.893 50.000 9.09 0.00 34.64 4.58
283 284 0.601046 ATACGGGCACATGAGCGATG 60.601 55.000 9.09 3.96 38.15 3.84
284 285 1.671901 TACGGGCACATGAGCGATGA 61.672 55.000 9.09 0.00 35.80 2.92
285 286 2.242572 CGGGCACATGAGCGATGAG 61.243 63.158 9.09 0.00 35.80 2.90
286 287 1.890979 GGGCACATGAGCGATGAGG 60.891 63.158 9.09 0.00 35.80 3.86
287 288 2.541120 GGCACATGAGCGATGAGGC 61.541 63.158 9.09 6.42 40.20 4.70
288 289 1.816679 GCACATGAGCGATGAGGCA 60.817 57.895 0.00 0.00 36.52 4.75
289 290 2.012237 CACATGAGCGATGAGGCAC 58.988 57.895 0.00 0.00 35.80 5.01
290 291 0.741927 CACATGAGCGATGAGGCACA 60.742 55.000 0.00 0.00 37.88 4.57
291 292 0.179702 ACATGAGCGATGAGGCACAT 59.820 50.000 0.00 0.00 43.51 3.21
301 302 4.882671 GATGAGGCACATCGTACATTTT 57.117 40.909 9.14 0.00 44.46 1.82
302 303 4.591202 GATGAGGCACATCGTACATTTTG 58.409 43.478 9.14 0.00 44.46 2.44
303 304 2.746904 TGAGGCACATCGTACATTTTGG 59.253 45.455 0.00 0.00 0.00 3.28
304 305 1.472480 AGGCACATCGTACATTTTGGC 59.528 47.619 0.00 0.00 0.00 4.52
305 306 1.201181 GGCACATCGTACATTTTGGCA 59.799 47.619 0.00 0.00 0.00 4.92
306 307 2.159254 GGCACATCGTACATTTTGGCAT 60.159 45.455 0.00 0.00 0.00 4.40
307 308 3.510719 GCACATCGTACATTTTGGCATT 58.489 40.909 0.00 0.00 0.00 3.56
308 309 3.304026 GCACATCGTACATTTTGGCATTG 59.696 43.478 0.00 0.00 0.00 2.82
309 310 4.484236 CACATCGTACATTTTGGCATTGT 58.516 39.130 0.00 0.00 0.00 2.71
310 311 4.922692 CACATCGTACATTTTGGCATTGTT 59.077 37.500 3.98 0.00 0.00 2.83
311 312 5.404968 CACATCGTACATTTTGGCATTGTTT 59.595 36.000 3.98 0.00 0.00 2.83
312 313 6.584184 CACATCGTACATTTTGGCATTGTTTA 59.416 34.615 3.98 0.00 0.00 2.01
313 314 7.115520 CACATCGTACATTTTGGCATTGTTTAA 59.884 33.333 3.98 0.00 0.00 1.52
314 315 7.328249 ACATCGTACATTTTGGCATTGTTTAAG 59.672 33.333 3.98 0.00 0.00 1.85
315 316 5.631512 TCGTACATTTTGGCATTGTTTAAGC 59.368 36.000 3.98 0.00 0.00 3.09
316 317 5.403766 CGTACATTTTGGCATTGTTTAAGCA 59.596 36.000 3.98 0.00 0.00 3.91
317 318 5.671742 ACATTTTGGCATTGTTTAAGCAC 57.328 34.783 0.00 0.00 0.00 4.40
318 319 5.367302 ACATTTTGGCATTGTTTAAGCACT 58.633 33.333 0.00 0.00 0.00 4.40
319 320 5.821995 ACATTTTGGCATTGTTTAAGCACTT 59.178 32.000 0.00 0.00 0.00 3.16
320 321 5.731599 TTTTGGCATTGTTTAAGCACTTG 57.268 34.783 0.00 0.00 0.00 3.16
321 322 4.399004 TTGGCATTGTTTAAGCACTTGT 57.601 36.364 0.00 0.00 0.00 3.16
322 323 5.521906 TTGGCATTGTTTAAGCACTTGTA 57.478 34.783 0.00 0.00 0.00 2.41
323 324 5.119931 TGGCATTGTTTAAGCACTTGTAG 57.880 39.130 0.00 0.00 0.00 2.74
324 325 4.824537 TGGCATTGTTTAAGCACTTGTAGA 59.175 37.500 0.00 0.00 0.00 2.59
325 326 5.476599 TGGCATTGTTTAAGCACTTGTAGAT 59.523 36.000 0.00 0.00 0.00 1.98
326 327 6.657117 TGGCATTGTTTAAGCACTTGTAGATA 59.343 34.615 0.00 0.00 0.00 1.98
327 328 7.175816 TGGCATTGTTTAAGCACTTGTAGATAA 59.824 33.333 0.00 0.00 0.00 1.75
328 329 8.190784 GGCATTGTTTAAGCACTTGTAGATAAT 58.809 33.333 0.00 0.00 0.00 1.28
332 333 9.727859 TTGTTTAAGCACTTGTAGATAATACCA 57.272 29.630 0.00 0.00 0.00 3.25
333 334 9.899661 TGTTTAAGCACTTGTAGATAATACCAT 57.100 29.630 0.00 0.00 0.00 3.55
335 336 8.902540 TTAAGCACTTGTAGATAATACCATGG 57.097 34.615 11.19 11.19 0.00 3.66
336 337 5.308825 AGCACTTGTAGATAATACCATGGC 58.691 41.667 13.04 0.00 0.00 4.40
337 338 4.152402 GCACTTGTAGATAATACCATGGCG 59.848 45.833 13.04 0.00 0.00 5.69
338 339 4.690748 CACTTGTAGATAATACCATGGCGG 59.309 45.833 13.04 0.00 42.50 6.13
348 349 3.416955 CCATGGCGGTAAGTTTTGC 57.583 52.632 0.00 0.00 0.00 3.68
349 350 0.455972 CCATGGCGGTAAGTTTTGCG 60.456 55.000 0.00 0.00 0.00 4.85
350 351 0.239879 CATGGCGGTAAGTTTTGCGT 59.760 50.000 0.00 0.00 0.00 5.24
351 352 0.955905 ATGGCGGTAAGTTTTGCGTT 59.044 45.000 0.00 0.00 0.00 4.84
352 353 0.029567 TGGCGGTAAGTTTTGCGTTG 59.970 50.000 0.00 0.00 0.00 4.10
353 354 0.662077 GGCGGTAAGTTTTGCGTTGG 60.662 55.000 0.00 0.00 0.00 3.77
354 355 0.029700 GCGGTAAGTTTTGCGTTGGT 59.970 50.000 0.00 0.00 0.00 3.67
355 356 1.534385 GCGGTAAGTTTTGCGTTGGTT 60.534 47.619 0.00 0.00 0.00 3.67
356 357 2.799871 CGGTAAGTTTTGCGTTGGTTT 58.200 42.857 0.00 0.00 0.00 3.27
357 358 2.532317 CGGTAAGTTTTGCGTTGGTTTG 59.468 45.455 0.00 0.00 0.00 2.93
358 359 3.731264 CGGTAAGTTTTGCGTTGGTTTGA 60.731 43.478 0.00 0.00 0.00 2.69
359 360 4.364860 GGTAAGTTTTGCGTTGGTTTGAT 58.635 39.130 0.00 0.00 0.00 2.57
360 361 4.443063 GGTAAGTTTTGCGTTGGTTTGATC 59.557 41.667 0.00 0.00 0.00 2.92
361 362 4.385358 AAGTTTTGCGTTGGTTTGATCT 57.615 36.364 0.00 0.00 0.00 2.75
362 363 4.385358 AGTTTTGCGTTGGTTTGATCTT 57.615 36.364 0.00 0.00 0.00 2.40
363 364 4.754322 AGTTTTGCGTTGGTTTGATCTTT 58.246 34.783 0.00 0.00 0.00 2.52
364 365 5.175127 AGTTTTGCGTTGGTTTGATCTTTT 58.825 33.333 0.00 0.00 0.00 2.27
365 366 5.063312 AGTTTTGCGTTGGTTTGATCTTTTG 59.937 36.000 0.00 0.00 0.00 2.44
366 367 2.468831 TGCGTTGGTTTGATCTTTTGC 58.531 42.857 0.00 0.00 0.00 3.68
367 368 1.792367 GCGTTGGTTTGATCTTTTGCC 59.208 47.619 0.00 0.00 0.00 4.52
368 369 2.403259 CGTTGGTTTGATCTTTTGCCC 58.597 47.619 0.00 0.00 0.00 5.36
369 370 2.766313 GTTGGTTTGATCTTTTGCCCC 58.234 47.619 0.00 0.00 0.00 5.80
370 371 0.965439 TGGTTTGATCTTTTGCCCCG 59.035 50.000 0.00 0.00 0.00 5.73
371 372 0.389817 GGTTTGATCTTTTGCCCCGC 60.390 55.000 0.00 0.00 0.00 6.13
372 373 0.732538 GTTTGATCTTTTGCCCCGCG 60.733 55.000 0.00 0.00 0.00 6.46
373 374 1.872197 TTTGATCTTTTGCCCCGCGG 61.872 55.000 21.04 21.04 0.00 6.46
374 375 2.437716 GATCTTTTGCCCCGCGGA 60.438 61.111 30.73 2.89 0.00 5.54
375 376 1.823899 GATCTTTTGCCCCGCGGAT 60.824 57.895 30.73 9.47 0.00 4.18
376 377 0.534203 GATCTTTTGCCCCGCGGATA 60.534 55.000 30.73 9.58 0.00 2.59
377 378 0.106918 ATCTTTTGCCCCGCGGATAA 60.107 50.000 30.73 15.69 0.00 1.75
378 379 0.746563 TCTTTTGCCCCGCGGATAAG 60.747 55.000 30.73 20.18 0.00 1.73
379 380 2.336400 CTTTTGCCCCGCGGATAAGC 62.336 60.000 30.73 23.23 0.00 3.09
380 381 2.830186 TTTTGCCCCGCGGATAAGCT 62.830 55.000 30.73 0.00 34.40 3.74
381 382 3.750373 TTGCCCCGCGGATAAGCTC 62.750 63.158 30.73 7.46 34.40 4.09
383 384 4.664677 CCCCGCGGATAAGCTCGG 62.665 72.222 30.73 13.18 41.41 4.63
385 386 4.286320 CCGCGGATAAGCTCGGCT 62.286 66.667 24.07 0.00 45.39 5.52
386 387 3.032609 CGCGGATAAGCTCGGCTG 61.033 66.667 0.00 0.00 45.39 4.85
387 388 2.663188 GCGGATAAGCTCGGCTGG 60.663 66.667 0.00 0.00 44.48 4.85
388 389 2.663188 CGGATAAGCTCGGCTGGC 60.663 66.667 0.00 0.00 39.62 4.85
389 390 2.281139 GGATAAGCTCGGCTGGCC 60.281 66.667 0.00 0.00 39.62 5.36
390 391 2.281139 GATAAGCTCGGCTGGCCC 60.281 66.667 0.00 0.00 39.62 5.80
407 408 4.717629 CGCTTGCCCTCGTGTCGA 62.718 66.667 0.00 0.00 0.00 4.20
408 409 3.112709 GCTTGCCCTCGTGTCGAC 61.113 66.667 9.11 9.11 0.00 4.20
454 455 4.696805 GAGGCCAACCCCAACCCC 62.697 72.222 5.01 0.00 36.11 4.95
456 457 4.565850 GGCCAACCCCAACCCCAA 62.566 66.667 0.00 0.00 0.00 4.12
457 458 3.238497 GCCAACCCCAACCCCAAC 61.238 66.667 0.00 0.00 0.00 3.77
458 459 2.525629 CCAACCCCAACCCCAACC 60.526 66.667 0.00 0.00 0.00 3.77
459 460 2.525629 CAACCCCAACCCCAACCC 60.526 66.667 0.00 0.00 0.00 4.11
460 461 3.852421 AACCCCAACCCCAACCCC 61.852 66.667 0.00 0.00 0.00 4.95
462 463 3.851184 CCCCAACCCCAACCCCAA 61.851 66.667 0.00 0.00 0.00 4.12
463 464 2.525629 CCCAACCCCAACCCCAAC 60.526 66.667 0.00 0.00 0.00 3.77
464 465 2.525629 CCAACCCCAACCCCAACC 60.526 66.667 0.00 0.00 0.00 3.77
465 466 2.283809 CAACCCCAACCCCAACCA 59.716 61.111 0.00 0.00 0.00 3.67
466 467 2.137528 CAACCCCAACCCCAACCAC 61.138 63.158 0.00 0.00 0.00 4.16
467 468 3.398365 AACCCCAACCCCAACCACC 62.398 63.158 0.00 0.00 0.00 4.61
468 469 3.838913 CCCCAACCCCAACCACCA 61.839 66.667 0.00 0.00 0.00 4.17
469 470 2.523168 CCCAACCCCAACCACCAC 60.523 66.667 0.00 0.00 0.00 4.16
470 471 2.523168 CCAACCCCAACCACCACC 60.523 66.667 0.00 0.00 0.00 4.61
471 472 2.523168 CAACCCCAACCACCACCC 60.523 66.667 0.00 0.00 0.00 4.61
472 473 3.840132 AACCCCAACCACCACCCC 61.840 66.667 0.00 0.00 0.00 4.95
508 509 1.305930 CCTTTCCCTCGCCTTTTCGG 61.306 60.000 0.00 0.00 0.00 4.30
529 531 1.648302 CCCATCAATGGCTCCCTCCA 61.648 60.000 3.33 0.00 46.70 3.86
569 595 4.778143 CCCACCACCCGTGCTAGC 62.778 72.222 8.10 8.10 41.53 3.42
595 627 1.210538 GTATCGGGTTCCCCTTCCTT 58.789 55.000 1.93 0.00 42.67 3.36
599 631 1.498176 CGGGTTCCCCTTCCTTCCTT 61.498 60.000 1.93 0.00 42.67 3.36
602 634 1.373536 GTTCCCCTTCCTTCCTTCCT 58.626 55.000 0.00 0.00 0.00 3.36
603 635 1.282447 GTTCCCCTTCCTTCCTTCCTC 59.718 57.143 0.00 0.00 0.00 3.71
604 636 0.253207 TCCCCTTCCTTCCTTCCTCC 60.253 60.000 0.00 0.00 0.00 4.30
605 637 1.282653 CCCCTTCCTTCCTTCCTCCC 61.283 65.000 0.00 0.00 0.00 4.30
606 638 0.253394 CCCTTCCTTCCTTCCTCCCT 60.253 60.000 0.00 0.00 0.00 4.20
607 639 1.208706 CCTTCCTTCCTTCCTCCCTC 58.791 60.000 0.00 0.00 0.00 4.30
608 640 1.208706 CTTCCTTCCTTCCTCCCTCC 58.791 60.000 0.00 0.00 0.00 4.30
609 641 0.253207 TTCCTTCCTTCCTCCCTCCC 60.253 60.000 0.00 0.00 0.00 4.30
610 642 1.162951 TCCTTCCTTCCTCCCTCCCT 61.163 60.000 0.00 0.00 0.00 4.20
611 643 0.692756 CCTTCCTTCCTCCCTCCCTC 60.693 65.000 0.00 0.00 0.00 4.30
612 644 0.341609 CTTCCTTCCTCCCTCCCTCT 59.658 60.000 0.00 0.00 0.00 3.69
613 645 0.340208 TTCCTTCCTCCCTCCCTCTC 59.660 60.000 0.00 0.00 0.00 3.20
614 646 1.074850 CCTTCCTCCCTCCCTCTCC 60.075 68.421 0.00 0.00 0.00 3.71
615 647 1.074850 CTTCCTCCCTCCCTCTCCC 60.075 68.421 0.00 0.00 0.00 4.30
616 648 1.550374 TTCCTCCCTCCCTCTCCCT 60.550 63.158 0.00 0.00 0.00 4.20
617 649 1.891296 TTCCTCCCTCCCTCTCCCTG 61.891 65.000 0.00 0.00 0.00 4.45
618 650 2.445654 CTCCCTCCCTCTCCCTGC 60.446 72.222 0.00 0.00 0.00 4.85
619 651 4.095400 TCCCTCCCTCTCCCTGCC 62.095 72.222 0.00 0.00 0.00 4.85
626 658 4.463879 CTCTCCCTGCCCGCACTG 62.464 72.222 0.00 0.00 0.00 3.66
628 660 4.767255 CTCCCTGCCCGCACTGTC 62.767 72.222 0.00 0.00 0.00 3.51
632 664 4.415150 CTGCCCGCACTGTCCCAT 62.415 66.667 0.00 0.00 0.00 4.00
633 665 4.408821 TGCCCGCACTGTCCCATC 62.409 66.667 0.00 0.00 0.00 3.51
697 729 3.948719 GCGGTGGTGGTGGAGGAA 61.949 66.667 0.00 0.00 0.00 3.36
698 730 2.032071 CGGTGGTGGTGGAGGAAC 59.968 66.667 0.00 0.00 0.00 3.62
700 732 1.844130 GGTGGTGGTGGAGGAACTT 59.156 57.895 0.00 0.00 41.55 2.66
765 828 3.181458 GGAAGATATACTTTCCACCGCCA 60.181 47.826 10.71 0.00 39.13 5.69
767 830 3.305720 AGATATACTTTCCACCGCCAGA 58.694 45.455 0.00 0.00 0.00 3.86
776 839 2.681778 ACCGCCAGACTCCTCCTG 60.682 66.667 0.00 0.00 0.00 3.86
843 934 3.763360 TCTCTCTCTCTTTCTTGCTCTGG 59.237 47.826 0.00 0.00 0.00 3.86
844 935 3.763360 CTCTCTCTCTTTCTTGCTCTGGA 59.237 47.826 0.00 0.00 0.00 3.86
845 936 4.155709 TCTCTCTCTTTCTTGCTCTGGAA 58.844 43.478 0.00 0.00 0.00 3.53
846 937 4.220382 TCTCTCTCTTTCTTGCTCTGGAAG 59.780 45.833 0.00 0.00 0.00 3.46
856 947 1.306482 CTCTGGAAGCAGGGGAGGA 60.306 63.158 0.00 0.00 0.00 3.71
858 949 0.475632 TCTGGAAGCAGGGGAGGAAA 60.476 55.000 0.00 0.00 0.00 3.13
864 955 2.548547 GCAGGGGAGGAAAGGGGTT 61.549 63.158 0.00 0.00 0.00 4.11
916 1018 1.078143 ATTTGGGAGGTCTGCTCGC 60.078 57.895 0.00 0.00 0.00 5.03
922 1024 0.107945 GGAGGTCTGCTCGCTTGATT 60.108 55.000 0.00 0.00 0.00 2.57
938 1040 1.066502 TGATTCGGGTTCGCTGATTGA 60.067 47.619 0.00 0.00 36.13 2.57
939 1041 1.327764 GATTCGGGTTCGCTGATTGAC 59.672 52.381 0.00 0.00 36.13 3.18
940 1042 1.011968 TTCGGGTTCGCTGATTGACG 61.012 55.000 0.00 0.00 36.13 4.35
964 1078 3.849951 TTCATCTCCGGCGGCTCC 61.850 66.667 23.83 0.00 0.00 4.70
1082 1199 1.258445 TTCCTGCGTCTTCCTCCCTC 61.258 60.000 0.00 0.00 0.00 4.30
1083 1200 2.726351 CCTGCGTCTTCCTCCCTCC 61.726 68.421 0.00 0.00 0.00 4.30
1084 1201 2.683933 TGCGTCTTCCTCCCTCCC 60.684 66.667 0.00 0.00 0.00 4.30
1085 1202 2.364448 GCGTCTTCCTCCCTCCCT 60.364 66.667 0.00 0.00 0.00 4.20
1105 1225 1.070758 TCCGCCTCCTCATGCTATTTC 59.929 52.381 0.00 0.00 0.00 2.17
1129 1249 9.616156 TTCACAAATCTTTTTACCACTACTACA 57.384 29.630 0.00 0.00 0.00 2.74
1130 1250 9.268268 TCACAAATCTTTTTACCACTACTACAG 57.732 33.333 0.00 0.00 0.00 2.74
1131 1251 9.052759 CACAAATCTTTTTACCACTACTACAGT 57.947 33.333 0.00 0.00 38.32 3.55
1174 1297 6.006275 AGTTCATAACTAATCTGTGCCCAT 57.994 37.500 0.00 0.00 40.69 4.00
1181 1304 0.846693 AATCTGTGCCCATAGGGTCC 59.153 55.000 3.68 0.00 46.51 4.46
1195 1318 5.304357 CCATAGGGTCCAATAAACAAATCCC 59.696 44.000 0.00 0.00 0.00 3.85
1210 1333 5.912892 ACAAATCCCGAATGAAAAACAAGT 58.087 33.333 0.00 0.00 0.00 3.16
1216 1339 4.358851 CCGAATGAAAAACAAGTGCTCAA 58.641 39.130 0.00 0.00 0.00 3.02
1231 1354 4.037208 AGTGCTCAACAAACCATTTCTCTG 59.963 41.667 0.00 0.00 0.00 3.35
1291 1428 2.035066 GCTCTGCATCTCTTCTCTCCTC 59.965 54.545 0.00 0.00 0.00 3.71
1303 1440 2.245438 CTCTCCTCCCCGAAACCAGC 62.245 65.000 0.00 0.00 0.00 4.85
1305 1442 3.330720 CCTCCCCGAAACCAGCCT 61.331 66.667 0.00 0.00 0.00 4.58
1322 1459 1.303309 CCTTCGGTCATGCTGATTCC 58.697 55.000 0.00 0.00 31.57 3.01
1352 1489 3.896888 TCCAATCCAACTGCTTCAACATT 59.103 39.130 0.00 0.00 0.00 2.71
1356 1493 1.688197 CCAACTGCTTCAACATTGGGT 59.312 47.619 0.00 0.00 36.88 4.51
1362 1499 4.037923 ACTGCTTCAACATTGGGTAAACAG 59.962 41.667 0.00 0.00 0.00 3.16
1363 1500 3.243704 TGCTTCAACATTGGGTAAACAGC 60.244 43.478 0.00 0.00 0.00 4.40
1374 1511 3.136809 TGGGTAAACAGCAGGTTCAGTTA 59.863 43.478 0.00 0.00 39.29 2.24
1403 1540 6.127507 ACTGTAGTAACTTAATCCGGTTCCTC 60.128 42.308 0.00 0.00 0.00 3.71
1421 1558 7.290813 GGTTCCTCCCAAATATCAAGTAGAAT 58.709 38.462 0.00 0.00 0.00 2.40
1422 1559 8.437575 GGTTCCTCCCAAATATCAAGTAGAATA 58.562 37.037 0.00 0.00 0.00 1.75
1423 1560 9.274206 GTTCCTCCCAAATATCAAGTAGAATAC 57.726 37.037 0.00 0.00 43.47 1.89
1424 1561 7.974504 TCCTCCCAAATATCAAGTAGAATACC 58.025 38.462 0.00 0.00 44.47 2.73
1427 1606 7.514721 TCCCAAATATCAAGTAGAATACCACC 58.485 38.462 0.00 0.00 44.47 4.61
1431 1655 9.354673 CAAATATCAAGTAGAATACCACCCAAT 57.645 33.333 0.00 0.00 44.47 3.16
1440 1664 8.211629 AGTAGAATACCACCCAATAAATCACTC 58.788 37.037 0.00 0.00 44.47 3.51
1460 1684 4.152045 ACTCGTCTGTGTTAACTCTCTACG 59.848 45.833 7.22 13.34 0.00 3.51
1461 1685 4.309933 TCGTCTGTGTTAACTCTCTACGA 58.690 43.478 19.14 19.14 34.80 3.43
1462 1686 4.388165 TCGTCTGTGTTAACTCTCTACGAG 59.612 45.833 19.14 6.44 45.56 4.18
1479 1703 6.114089 TCTACGAGTACTACTTTGCATCTCT 58.886 40.000 0.00 0.00 0.00 3.10
1485 1709 6.998802 AGTACTACTTTGCATCTCTTCACTT 58.001 36.000 0.00 0.00 0.00 3.16
1514 1738 4.689345 CGGAACTAAAACTAGAACTGGGTG 59.311 45.833 0.00 0.00 0.00 4.61
1539 1763 4.693566 TGCTGATTTCGTTCCGTTTAATCT 59.306 37.500 0.00 0.00 0.00 2.40
1543 1767 5.180492 TGATTTCGTTCCGTTTAATCTGCTT 59.820 36.000 0.00 0.00 0.00 3.91
1544 1768 4.657075 TTCGTTCCGTTTAATCTGCTTC 57.343 40.909 0.00 0.00 0.00 3.86
1570 1801 5.437289 TTGTTGAGCCACTAAATTCAGTG 57.563 39.130 1.29 1.29 44.60 3.66
1655 1886 1.627834 AGCTTGGACTCTTCCTCTTGG 59.372 52.381 0.00 0.00 43.31 3.61
1656 1887 1.339535 GCTTGGACTCTTCCTCTTGGG 60.340 57.143 0.00 0.00 43.31 4.12
1716 1947 1.036707 CTAGGGGAGAGGAAGCTTCG 58.963 60.000 19.91 0.00 0.00 3.79
1723 1960 2.223852 GGAGAGGAAGCTTCGGATGTAC 60.224 54.545 19.91 4.64 0.00 2.90
1731 1969 2.169352 AGCTTCGGATGTACATGCTTCT 59.831 45.455 22.88 12.10 0.00 2.85
1732 1970 2.286294 GCTTCGGATGTACATGCTTCTG 59.714 50.000 22.88 10.67 0.00 3.02
1788 2026 2.107204 AGTGCCCAGTTCAAATCAGACT 59.893 45.455 0.00 0.00 0.00 3.24
1789 2027 2.227388 GTGCCCAGTTCAAATCAGACTG 59.773 50.000 0.00 0.00 0.00 3.51
1839 2080 1.448985 TGGCTAAATCCACGTGCTTC 58.551 50.000 10.91 0.00 0.00 3.86
1879 2125 3.882888 TGTCCTGTTTTGGATGTTCAGTC 59.117 43.478 0.00 0.00 38.52 3.51
1886 2133 7.169158 TGTTTTGGATGTTCAGTCTTCTTTT 57.831 32.000 0.00 0.00 0.00 2.27
1900 2147 7.595502 TCAGTCTTCTTTTCTAAGCGAAACTAG 59.404 37.037 0.00 0.00 41.13 2.57
1975 2223 7.615582 TTTCTGTTCAATGTTAGGCAGATAG 57.384 36.000 0.00 0.00 33.72 2.08
1979 2227 6.057533 TGTTCAATGTTAGGCAGATAGGATG 58.942 40.000 0.00 0.00 0.00 3.51
2005 2254 9.956720 GAATGATAAGGGACATCAACTTATTTG 57.043 33.333 8.56 0.00 37.49 2.32
2062 2317 7.675062 AGTCTGAACCATCATCCTATAATGAC 58.325 38.462 0.00 0.00 38.43 3.06
2408 2663 1.614903 TGACAATTTTGCCTGCTGGAG 59.385 47.619 14.77 0.00 34.57 3.86
2424 2679 3.379688 GCTGGAGATGGGATTTCTTGTTC 59.620 47.826 0.00 0.00 0.00 3.18
2466 2722 1.704628 TGACATGCTCTTCCTTTGGGA 59.295 47.619 0.00 0.00 40.36 4.37
2537 2793 0.756903 AGCTCGTTGGGTACTGTGTT 59.243 50.000 0.00 0.00 0.00 3.32
2744 3014 0.616679 AAATTGCCCATGGAGCAGCT 60.617 50.000 22.00 13.98 42.17 4.24
2747 3017 0.394762 TTGCCCATGGAGCAGCTAAG 60.395 55.000 22.00 1.87 42.17 2.18
2792 3062 1.276622 AGGCCAAAGTCATCTACCGT 58.723 50.000 5.01 0.00 0.00 4.83
2807 3077 4.963373 TCTACCGTGATTTCAAAACCTCA 58.037 39.130 0.00 0.00 0.00 3.86
2858 3128 4.042809 TCCACAGCCTTGAAGGATCTTTTA 59.957 41.667 16.93 0.00 37.67 1.52
2870 3140 5.223449 AGGATCTTTTACTTTGTGTCCGA 57.777 39.130 0.00 0.00 0.00 4.55
2885 3155 9.098355 CTTTGTGTCCGAAAAATATCTCTATCA 57.902 33.333 0.00 0.00 0.00 2.15
2924 3194 6.073765 TCACGCAATTTCTTCTTCAGAACTAC 60.074 38.462 0.00 0.00 41.56 2.73
2945 3215 2.158449 CGACGCAAAGCTCTCAGATTTT 59.842 45.455 0.00 0.00 30.47 1.82
3083 3353 1.066358 TCAGAATCCTCAGCTGCACAG 60.066 52.381 9.47 0.70 0.00 3.66
3110 3516 4.213270 TCTTGCTGAAAATCTAACCACACG 59.787 41.667 0.00 0.00 0.00 4.49
3112 3518 3.249799 TGCTGAAAATCTAACCACACGTG 59.750 43.478 15.48 15.48 0.00 4.49
3121 3527 1.227999 AACCACACGTGCCTGAATCG 61.228 55.000 17.22 0.00 0.00 3.34
3152 3558 0.678950 TCACTCTGGTTGCGTCATCA 59.321 50.000 0.00 0.00 0.00 3.07
3154 3560 2.079158 CACTCTGGTTGCGTCATCAAT 58.921 47.619 0.00 0.00 0.00 2.57
3184 3590 6.807789 TGCCAAACTTAACTAATTTTTCGGT 58.192 32.000 0.00 0.00 0.00 4.69
3217 3623 4.585581 TCAATCCTCATGTGCCCAAATATG 59.414 41.667 0.00 0.00 0.00 1.78
3248 3654 9.567776 TGAAAATCTAAACACATCTACCTGAAA 57.432 29.630 0.00 0.00 0.00 2.69
3251 3657 6.092955 TCTAAACACATCTACCTGAAACGT 57.907 37.500 0.00 0.00 0.00 3.99
3253 3659 2.413837 ACACATCTACCTGAAACGTGC 58.586 47.619 0.00 0.00 31.01 5.34
3260 3666 0.593128 ACCTGAAACGTGCTTGCATC 59.407 50.000 0.00 0.00 0.00 3.91
3266 3672 0.880278 AACGTGCTTGCATCGTCACT 60.880 50.000 17.85 5.95 36.80 3.41
3393 3800 0.979709 TGGTCCTCCTGGAGATGCTG 60.980 60.000 25.18 7.89 44.16 4.41
3651 4058 3.003763 GACGCCAAGGAGGGAGGT 61.004 66.667 0.00 0.00 38.09 3.85
3704 4111 2.743928 CAGCAACCGGAGCCTGAC 60.744 66.667 9.46 0.00 0.00 3.51
3717 4124 3.062466 CTGACCGGCTCGAGACCA 61.062 66.667 18.75 6.02 0.00 4.02
3741 4148 0.666374 CGACCAAGGGGAACAACAAC 59.334 55.000 0.00 0.00 38.05 3.32
3743 4150 1.681264 GACCAAGGGGAACAACAACAG 59.319 52.381 0.00 0.00 38.05 3.16
3750 4157 2.123897 AACAACAACAGGCCCGCT 60.124 55.556 0.00 0.00 0.00 5.52
3753 4160 2.978010 AACAACAGGCCCGCTTCG 60.978 61.111 0.00 0.00 0.00 3.79
3754 4161 3.767630 AACAACAGGCCCGCTTCGT 62.768 57.895 0.00 0.00 0.00 3.85
3909 4316 0.548989 TTGTGCCTGTGTTGTAGGGT 59.451 50.000 0.00 0.00 35.80 4.34
3914 4321 2.148768 GCCTGTGTTGTAGGGTTGTAC 58.851 52.381 0.00 0.00 35.80 2.90
3968 4375 5.739358 GCTTGTATCTATCCGGTTGTAGCTT 60.739 44.000 0.00 0.00 0.00 3.74
3969 4376 5.449107 TGTATCTATCCGGTTGTAGCTTC 57.551 43.478 0.00 0.00 0.00 3.86
3970 4377 5.138276 TGTATCTATCCGGTTGTAGCTTCT 58.862 41.667 0.00 0.00 0.00 2.85
3971 4378 6.301486 TGTATCTATCCGGTTGTAGCTTCTA 58.699 40.000 0.00 0.00 0.00 2.10
3972 4379 5.968528 ATCTATCCGGTTGTAGCTTCTAG 57.031 43.478 0.00 0.00 0.00 2.43
3973 4380 4.789807 TCTATCCGGTTGTAGCTTCTAGT 58.210 43.478 0.00 0.00 0.00 2.57
3986 4393 7.110810 TGTAGCTTCTAGTGTCTGTATGTAGT 58.889 38.462 0.00 0.00 0.00 2.73
3988 4395 9.107177 GTAGCTTCTAGTGTCTGTATGTAGTTA 57.893 37.037 0.00 0.00 0.00 2.24
4023 4430 2.291741 CTGGTTGCTTTGGTTCTGACTC 59.708 50.000 0.00 0.00 0.00 3.36
4025 4432 2.887152 GGTTGCTTTGGTTCTGACTCAT 59.113 45.455 0.00 0.00 0.00 2.90
4026 4433 3.304928 GGTTGCTTTGGTTCTGACTCATG 60.305 47.826 0.00 0.00 0.00 3.07
4027 4434 3.490439 TGCTTTGGTTCTGACTCATGA 57.510 42.857 0.00 0.00 0.00 3.07
4028 4435 3.141398 TGCTTTGGTTCTGACTCATGAC 58.859 45.455 0.00 0.00 0.00 3.06
4029 4436 2.158449 GCTTTGGTTCTGACTCATGACG 59.842 50.000 0.00 0.00 0.00 4.35
4030 4437 1.795768 TTGGTTCTGACTCATGACGC 58.204 50.000 0.00 0.00 0.00 5.19
4092 4499 4.279922 CACCCTGTTAAACCAAACCCTTAG 59.720 45.833 0.00 0.00 0.00 2.18
4193 4691 4.202243 ACAGGGATGTTGACCATTTTGTTG 60.202 41.667 0.00 0.00 32.56 3.33
4258 4774 4.088634 CCAGAGAATGTTGGGGAAATCAA 58.911 43.478 0.00 0.00 0.00 2.57
4331 4853 3.245586 TGGTGGGTTCAGCCAAATTATCT 60.246 43.478 0.00 0.00 40.42 1.98
4375 4904 4.829492 GCCAAATTATCTGGGCAAGAGTAT 59.171 41.667 0.00 0.00 45.70 2.12
4430 4959 1.961277 CAAAACAGAGCTCGCCCGT 60.961 57.895 8.37 1.57 0.00 5.28
4471 5000 3.011885 CTCCTCCTCCTCCTCGGT 58.988 66.667 0.00 0.00 0.00 4.69
4674 7908 9.537848 CGCGTTTTTATTCTTCAGTAAAATAGT 57.462 29.630 0.00 0.00 31.90 2.12
4716 7950 7.416964 AGATAGATTTCAGACTGCTGTACTT 57.583 36.000 0.00 0.00 42.84 2.24
4717 7951 7.488322 AGATAGATTTCAGACTGCTGTACTTC 58.512 38.462 0.00 0.00 42.84 3.01
4741 7975 7.555965 TCATTAACTGACTAGCAAAGCTGATA 58.444 34.615 1.04 0.00 40.10 2.15
4749 7983 7.825681 TGACTAGCAAAGCTGATAGATAGATC 58.174 38.462 5.36 0.00 43.02 2.75
4753 7987 7.484993 AGCAAAGCTGATAGATAGATCTCAT 57.515 36.000 0.00 0.00 37.57 2.90
4759 7993 8.743085 AGCTGATAGATAGATCTCATCTTCTC 57.257 38.462 15.44 13.45 40.76 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.678101 GATAGCACCAATTGACCTGGC 59.322 52.381 7.12 3.03 37.48 4.85
1 2 3.003394 TGATAGCACCAATTGACCTGG 57.997 47.619 7.12 0.00 40.05 4.45
2 3 3.243301 GCATGATAGCACCAATTGACCTG 60.243 47.826 7.12 0.24 0.00 4.00
3 4 2.954318 GCATGATAGCACCAATTGACCT 59.046 45.455 7.12 2.53 0.00 3.85
4 5 2.035066 GGCATGATAGCACCAATTGACC 59.965 50.000 7.12 0.00 35.83 4.02
5 6 2.954318 AGGCATGATAGCACCAATTGAC 59.046 45.455 7.12 0.00 35.83 3.18
6 7 3.301794 AGGCATGATAGCACCAATTGA 57.698 42.857 7.12 0.00 35.83 2.57
7 8 4.392047 TCTAGGCATGATAGCACCAATTG 58.608 43.478 0.00 0.00 35.83 2.32
8 9 4.349048 TCTCTAGGCATGATAGCACCAATT 59.651 41.667 0.00 0.00 35.83 2.32
9 10 3.906218 TCTCTAGGCATGATAGCACCAAT 59.094 43.478 0.00 0.00 35.83 3.16
10 11 3.308401 TCTCTAGGCATGATAGCACCAA 58.692 45.455 0.00 0.00 35.83 3.67
11 12 2.896044 CTCTCTAGGCATGATAGCACCA 59.104 50.000 0.00 0.00 35.83 4.17
12 13 2.896685 ACTCTCTAGGCATGATAGCACC 59.103 50.000 0.00 0.00 35.83 5.01
13 14 3.305950 CCACTCTCTAGGCATGATAGCAC 60.306 52.174 0.00 0.00 35.83 4.40
14 15 2.896044 CCACTCTCTAGGCATGATAGCA 59.104 50.000 0.00 0.00 35.83 3.49
15 16 2.896685 ACCACTCTCTAGGCATGATAGC 59.103 50.000 0.00 0.00 0.00 2.97
16 17 4.832266 AGAACCACTCTCTAGGCATGATAG 59.168 45.833 0.00 0.00 0.00 2.08
17 18 4.809193 AGAACCACTCTCTAGGCATGATA 58.191 43.478 0.00 0.00 0.00 2.15
18 19 3.640967 GAGAACCACTCTCTAGGCATGAT 59.359 47.826 0.00 0.00 46.32 2.45
19 20 3.027412 GAGAACCACTCTCTAGGCATGA 58.973 50.000 0.00 0.00 46.32 3.07
20 21 3.451141 GAGAACCACTCTCTAGGCATG 57.549 52.381 0.00 0.00 46.32 4.06
29 30 4.691216 GCGATAAGTTTTGAGAACCACTCT 59.309 41.667 0.00 0.00 45.13 3.24
30 31 4.142881 GGCGATAAGTTTTGAGAACCACTC 60.143 45.833 0.00 0.00 45.11 3.51
31 32 3.751698 GGCGATAAGTTTTGAGAACCACT 59.248 43.478 0.00 0.00 0.00 4.00
32 33 3.500680 TGGCGATAAGTTTTGAGAACCAC 59.499 43.478 0.00 0.00 0.00 4.16
33 34 3.745799 TGGCGATAAGTTTTGAGAACCA 58.254 40.909 0.00 0.00 0.00 3.67
34 35 4.156008 ACATGGCGATAAGTTTTGAGAACC 59.844 41.667 0.00 0.00 0.00 3.62
35 36 5.296813 ACATGGCGATAAGTTTTGAGAAC 57.703 39.130 0.00 0.00 0.00 3.01
36 37 5.957842 AACATGGCGATAAGTTTTGAGAA 57.042 34.783 0.00 0.00 0.00 2.87
37 38 5.957842 AAACATGGCGATAAGTTTTGAGA 57.042 34.783 0.00 0.00 30.64 3.27
60 61 5.779529 ACAGACGGAGTAGTACTCAAAAA 57.220 39.130 27.41 0.00 46.79 1.94
61 62 5.278660 GGAACAGACGGAGTAGTACTCAAAA 60.279 44.000 27.41 0.00 46.79 2.44
62 63 4.217118 GGAACAGACGGAGTAGTACTCAAA 59.783 45.833 27.41 0.00 46.79 2.69
63 64 3.755378 GGAACAGACGGAGTAGTACTCAA 59.245 47.826 27.41 0.00 46.79 3.02
64 65 3.008813 AGGAACAGACGGAGTAGTACTCA 59.991 47.826 27.41 0.00 46.79 3.41
73 74 7.611213 AACAAATATTTAGGAACAGACGGAG 57.389 36.000 0.00 0.00 0.00 4.63
74 75 7.989416 AAACAAATATTTAGGAACAGACGGA 57.011 32.000 0.00 0.00 0.00 4.69
106 107 9.922305 GCTCTGTATGTAGTCATCATTTAAAAC 57.078 33.333 0.00 0.00 35.70 2.43
107 108 8.817100 CGCTCTGTATGTAGTCATCATTTAAAA 58.183 33.333 0.00 0.00 35.70 1.52
108 109 8.194769 TCGCTCTGTATGTAGTCATCATTTAAA 58.805 33.333 0.00 0.00 35.70 1.52
109 110 7.712797 TCGCTCTGTATGTAGTCATCATTTAA 58.287 34.615 0.00 0.00 35.70 1.52
110 111 7.272037 TCGCTCTGTATGTAGTCATCATTTA 57.728 36.000 0.00 0.00 35.70 1.40
111 112 6.149129 TCGCTCTGTATGTAGTCATCATTT 57.851 37.500 0.00 0.00 35.70 2.32
112 113 5.774498 TCGCTCTGTATGTAGTCATCATT 57.226 39.130 0.00 0.00 35.70 2.57
113 114 5.774498 TTCGCTCTGTATGTAGTCATCAT 57.226 39.130 0.00 0.00 35.70 2.45
114 115 5.576447 TTTCGCTCTGTATGTAGTCATCA 57.424 39.130 0.00 0.00 35.70 3.07
115 116 6.209361 TCATTTCGCTCTGTATGTAGTCATC 58.791 40.000 0.00 0.00 35.70 2.92
116 117 6.149129 TCATTTCGCTCTGTATGTAGTCAT 57.851 37.500 0.00 0.00 38.00 3.06
117 118 5.125578 ACTCATTTCGCTCTGTATGTAGTCA 59.874 40.000 0.00 0.00 0.00 3.41
118 119 5.457148 CACTCATTTCGCTCTGTATGTAGTC 59.543 44.000 0.00 0.00 0.00 2.59
119 120 5.125578 TCACTCATTTCGCTCTGTATGTAGT 59.874 40.000 0.00 0.00 0.00 2.73
120 121 5.582550 TCACTCATTTCGCTCTGTATGTAG 58.417 41.667 0.00 0.00 0.00 2.74
121 122 5.576447 TCACTCATTTCGCTCTGTATGTA 57.424 39.130 0.00 0.00 0.00 2.29
122 123 4.456280 TCACTCATTTCGCTCTGTATGT 57.544 40.909 0.00 0.00 0.00 2.29
123 124 5.752472 AGATTCACTCATTTCGCTCTGTATG 59.248 40.000 0.00 0.00 0.00 2.39
124 125 5.911752 AGATTCACTCATTTCGCTCTGTAT 58.088 37.500 0.00 0.00 0.00 2.29
125 126 5.330455 AGATTCACTCATTTCGCTCTGTA 57.670 39.130 0.00 0.00 0.00 2.74
126 127 4.199432 AGATTCACTCATTTCGCTCTGT 57.801 40.909 0.00 0.00 0.00 3.41
127 128 7.144661 AGTATAGATTCACTCATTTCGCTCTG 58.855 38.462 0.00 0.00 0.00 3.35
128 129 7.283625 AGTATAGATTCACTCATTTCGCTCT 57.716 36.000 0.00 0.00 0.00 4.09
129 130 7.649705 TGAAGTATAGATTCACTCATTTCGCTC 59.350 37.037 0.00 0.00 31.86 5.03
130 131 7.492524 TGAAGTATAGATTCACTCATTTCGCT 58.507 34.615 0.00 0.00 31.86 4.93
131 132 7.700322 TGAAGTATAGATTCACTCATTTCGC 57.300 36.000 0.00 0.00 31.86 4.70
158 159 9.642343 ACCACATACGGATGTATATAGACATAT 57.358 33.333 14.23 5.08 44.82 1.78
159 160 8.899771 CACCACATACGGATGTATATAGACATA 58.100 37.037 14.23 0.00 44.82 2.29
160 161 7.614192 TCACCACATACGGATGTATATAGACAT 59.386 37.037 14.23 12.70 44.82 3.06
161 162 6.943718 TCACCACATACGGATGTATATAGACA 59.056 38.462 14.23 2.07 44.82 3.41
162 163 7.249147 GTCACCACATACGGATGTATATAGAC 58.751 42.308 14.23 12.97 44.82 2.59
163 164 6.376299 GGTCACCACATACGGATGTATATAGA 59.624 42.308 14.23 4.80 44.82 1.98
164 165 6.152154 TGGTCACCACATACGGATGTATATAG 59.848 42.308 14.23 0.00 44.82 1.31
165 166 6.011481 TGGTCACCACATACGGATGTATATA 58.989 40.000 14.23 0.00 44.82 0.86
166 167 4.836175 TGGTCACCACATACGGATGTATAT 59.164 41.667 14.23 0.00 44.82 0.86
167 168 4.216708 TGGTCACCACATACGGATGTATA 58.783 43.478 14.23 0.00 44.82 1.47
168 169 3.035363 TGGTCACCACATACGGATGTAT 58.965 45.455 14.23 1.38 44.82 2.29
169 170 2.458620 TGGTCACCACATACGGATGTA 58.541 47.619 14.23 0.00 44.82 2.29
171 172 2.620251 ATGGTCACCACATACGGATG 57.380 50.000 5.94 5.94 35.80 3.51
172 173 3.054728 TCAAATGGTCACCACATACGGAT 60.055 43.478 0.00 0.00 35.80 4.18
173 174 2.303311 TCAAATGGTCACCACATACGGA 59.697 45.455 0.00 0.00 35.80 4.69
174 175 2.705730 TCAAATGGTCACCACATACGG 58.294 47.619 0.00 0.00 35.80 4.02
175 176 4.757799 TTTCAAATGGTCACCACATACG 57.242 40.909 0.00 0.00 35.80 3.06
176 177 6.375455 AGAGATTTCAAATGGTCACCACATAC 59.625 38.462 0.00 0.00 35.80 2.39
177 178 6.484288 AGAGATTTCAAATGGTCACCACATA 58.516 36.000 0.00 0.00 35.80 2.29
178 179 5.327732 AGAGATTTCAAATGGTCACCACAT 58.672 37.500 0.00 0.00 35.80 3.21
179 180 4.728772 AGAGATTTCAAATGGTCACCACA 58.271 39.130 0.00 0.00 35.80 4.17
180 181 6.817765 TTAGAGATTTCAAATGGTCACCAC 57.182 37.500 0.00 0.00 35.80 4.16
181 182 8.956426 GTATTTAGAGATTTCAAATGGTCACCA 58.044 33.333 0.00 0.00 38.19 4.17
182 183 8.122952 CGTATTTAGAGATTTCAAATGGTCACC 58.877 37.037 0.00 0.00 0.00 4.02
183 184 8.122952 CCGTATTTAGAGATTTCAAATGGTCAC 58.877 37.037 0.00 0.00 0.00 3.67
184 185 8.044309 TCCGTATTTAGAGATTTCAAATGGTCA 58.956 33.333 0.00 0.00 0.00 4.02
185 186 8.433421 TCCGTATTTAGAGATTTCAAATGGTC 57.567 34.615 0.00 0.00 0.00 4.02
186 187 7.499232 CCTCCGTATTTAGAGATTTCAAATGGT 59.501 37.037 0.00 0.00 31.43 3.55
187 188 7.041098 CCCTCCGTATTTAGAGATTTCAAATGG 60.041 40.741 0.00 0.00 31.43 3.16
188 189 7.715249 TCCCTCCGTATTTAGAGATTTCAAATG 59.285 37.037 0.00 0.00 31.43 2.32
189 190 7.802117 TCCCTCCGTATTTAGAGATTTCAAAT 58.198 34.615 0.00 0.00 31.43 2.32
190 191 7.190335 TCCCTCCGTATTTAGAGATTTCAAA 57.810 36.000 0.00 0.00 31.43 2.69
191 192 6.183360 CCTCCCTCCGTATTTAGAGATTTCAA 60.183 42.308 0.00 0.00 31.43 2.69
192 193 5.304614 CCTCCCTCCGTATTTAGAGATTTCA 59.695 44.000 0.00 0.00 31.43 2.69
193 194 5.279556 CCCTCCCTCCGTATTTAGAGATTTC 60.280 48.000 0.00 0.00 31.43 2.17
194 195 4.593634 CCCTCCCTCCGTATTTAGAGATTT 59.406 45.833 0.00 0.00 31.43 2.17
195 196 4.140758 TCCCTCCCTCCGTATTTAGAGATT 60.141 45.833 0.00 0.00 31.43 2.40
196 197 3.401683 TCCCTCCCTCCGTATTTAGAGAT 59.598 47.826 0.00 0.00 31.43 2.75
197 198 2.787625 TCCCTCCCTCCGTATTTAGAGA 59.212 50.000 0.00 0.00 31.43 3.10
198 199 3.158676 CTCCCTCCCTCCGTATTTAGAG 58.841 54.545 0.00 0.00 0.00 2.43
199 200 2.517127 ACTCCCTCCCTCCGTATTTAGA 59.483 50.000 0.00 0.00 0.00 2.10
200 201 2.960163 ACTCCCTCCCTCCGTATTTAG 58.040 52.381 0.00 0.00 0.00 1.85
201 202 3.464833 ACTACTCCCTCCCTCCGTATTTA 59.535 47.826 0.00 0.00 0.00 1.40
202 203 2.246849 ACTACTCCCTCCCTCCGTATTT 59.753 50.000 0.00 0.00 0.00 1.40
203 204 1.858246 ACTACTCCCTCCCTCCGTATT 59.142 52.381 0.00 0.00 0.00 1.89
204 205 1.532038 ACTACTCCCTCCCTCCGTAT 58.468 55.000 0.00 0.00 0.00 3.06
205 206 2.196742 TACTACTCCCTCCCTCCGTA 57.803 55.000 0.00 0.00 0.00 4.02
206 207 1.532038 ATACTACTCCCTCCCTCCGT 58.468 55.000 0.00 0.00 0.00 4.69
207 208 2.374504 TGTATACTACTCCCTCCCTCCG 59.625 54.545 4.17 0.00 0.00 4.63
208 209 4.106019 TCTTGTATACTACTCCCTCCCTCC 59.894 50.000 4.17 0.00 0.00 4.30
209 210 5.321934 TCTTGTATACTACTCCCTCCCTC 57.678 47.826 4.17 0.00 0.00 4.30
210 211 5.745988 TTCTTGTATACTACTCCCTCCCT 57.254 43.478 4.17 0.00 0.00 4.20
211 212 6.155737 TGTTTTCTTGTATACTACTCCCTCCC 59.844 42.308 4.17 0.00 0.00 4.30
212 213 7.179076 TGTTTTCTTGTATACTACTCCCTCC 57.821 40.000 4.17 0.00 0.00 4.30
213 214 9.968870 CTATGTTTTCTTGTATACTACTCCCTC 57.031 37.037 4.17 0.00 0.00 4.30
214 215 8.422566 GCTATGTTTTCTTGTATACTACTCCCT 58.577 37.037 4.17 0.00 0.00 4.20
215 216 7.381678 CGCTATGTTTTCTTGTATACTACTCCC 59.618 40.741 4.17 0.00 0.00 4.30
216 217 7.381678 CCGCTATGTTTTCTTGTATACTACTCC 59.618 40.741 4.17 0.00 0.00 3.85
217 218 7.096147 GCCGCTATGTTTTCTTGTATACTACTC 60.096 40.741 4.17 0.00 0.00 2.59
218 219 6.700520 GCCGCTATGTTTTCTTGTATACTACT 59.299 38.462 4.17 0.00 0.00 2.57
219 220 6.477688 TGCCGCTATGTTTTCTTGTATACTAC 59.522 38.462 4.17 0.00 0.00 2.73
220 221 6.575267 TGCCGCTATGTTTTCTTGTATACTA 58.425 36.000 4.17 0.00 0.00 1.82
221 222 5.424757 TGCCGCTATGTTTTCTTGTATACT 58.575 37.500 4.17 0.00 0.00 2.12
222 223 5.728351 TGCCGCTATGTTTTCTTGTATAC 57.272 39.130 0.00 0.00 0.00 1.47
223 224 6.765989 AGAATGCCGCTATGTTTTCTTGTATA 59.234 34.615 0.00 0.00 0.00 1.47
224 225 5.590259 AGAATGCCGCTATGTTTTCTTGTAT 59.410 36.000 0.00 0.00 0.00 2.29
225 226 4.941263 AGAATGCCGCTATGTTTTCTTGTA 59.059 37.500 0.00 0.00 0.00 2.41
226 227 3.758554 AGAATGCCGCTATGTTTTCTTGT 59.241 39.130 0.00 0.00 0.00 3.16
227 228 4.142622 TGAGAATGCCGCTATGTTTTCTTG 60.143 41.667 0.00 0.00 0.00 3.02
228 229 4.009675 TGAGAATGCCGCTATGTTTTCTT 58.990 39.130 0.00 0.00 0.00 2.52
229 230 3.609853 TGAGAATGCCGCTATGTTTTCT 58.390 40.909 0.00 0.00 0.00 2.52
230 231 4.355543 TTGAGAATGCCGCTATGTTTTC 57.644 40.909 0.00 0.00 0.00 2.29
231 232 4.782019 TTTGAGAATGCCGCTATGTTTT 57.218 36.364 0.00 0.00 0.00 2.43
232 233 4.782019 TTTTGAGAATGCCGCTATGTTT 57.218 36.364 0.00 0.00 0.00 2.83
233 234 4.782019 TTTTTGAGAATGCCGCTATGTT 57.218 36.364 0.00 0.00 0.00 2.71
251 252 8.470805 TCATGTGCCCGTATTATTATTGTTTTT 58.529 29.630 0.00 0.00 0.00 1.94
252 253 8.001881 TCATGTGCCCGTATTATTATTGTTTT 57.998 30.769 0.00 0.00 0.00 2.43
253 254 7.575414 TCATGTGCCCGTATTATTATTGTTT 57.425 32.000 0.00 0.00 0.00 2.83
254 255 6.293955 GCTCATGTGCCCGTATTATTATTGTT 60.294 38.462 8.59 0.00 0.00 2.83
255 256 5.181245 GCTCATGTGCCCGTATTATTATTGT 59.819 40.000 8.59 0.00 0.00 2.71
256 257 5.631026 GCTCATGTGCCCGTATTATTATTG 58.369 41.667 8.59 0.00 0.00 1.90
257 258 4.391830 CGCTCATGTGCCCGTATTATTATT 59.608 41.667 13.81 0.00 0.00 1.40
258 259 3.932710 CGCTCATGTGCCCGTATTATTAT 59.067 43.478 13.81 0.00 0.00 1.28
259 260 3.006003 TCGCTCATGTGCCCGTATTATTA 59.994 43.478 13.81 0.00 0.00 0.98
260 261 2.143122 CGCTCATGTGCCCGTATTATT 58.857 47.619 13.81 0.00 0.00 1.40
261 262 1.343142 TCGCTCATGTGCCCGTATTAT 59.657 47.619 13.81 0.00 0.00 1.28
262 263 0.747852 TCGCTCATGTGCCCGTATTA 59.252 50.000 13.81 0.00 0.00 0.98
263 264 0.106708 ATCGCTCATGTGCCCGTATT 59.893 50.000 13.81 0.00 0.00 1.89
264 265 0.601046 CATCGCTCATGTGCCCGTAT 60.601 55.000 13.81 0.81 0.00 3.06
265 266 1.227234 CATCGCTCATGTGCCCGTA 60.227 57.895 13.81 0.00 0.00 4.02
266 267 2.512286 CATCGCTCATGTGCCCGT 60.512 61.111 13.81 0.00 0.00 5.28
267 268 2.202919 TCATCGCTCATGTGCCCG 60.203 61.111 13.81 1.54 33.66 6.13
268 269 1.890979 CCTCATCGCTCATGTGCCC 60.891 63.158 13.81 0.00 33.66 5.36
269 270 2.541120 GCCTCATCGCTCATGTGCC 61.541 63.158 13.81 0.00 33.66 5.01
270 271 1.816679 TGCCTCATCGCTCATGTGC 60.817 57.895 9.72 9.72 33.66 4.57
271 272 0.741927 TGTGCCTCATCGCTCATGTG 60.742 55.000 0.00 0.00 33.66 3.21
272 273 0.179702 ATGTGCCTCATCGCTCATGT 59.820 50.000 0.00 0.00 40.46 3.21
273 274 0.866427 GATGTGCCTCATCGCTCATG 59.134 55.000 3.13 0.00 41.65 3.07
274 275 3.302375 GATGTGCCTCATCGCTCAT 57.698 52.632 3.80 0.00 43.62 2.90
275 276 4.842292 GATGTGCCTCATCGCTCA 57.158 55.556 3.80 0.00 42.57 4.26
280 281 4.496341 CCAAAATGTACGATGTGCCTCATC 60.496 45.833 8.38 8.38 46.68 2.92
281 282 3.378112 CCAAAATGTACGATGTGCCTCAT 59.622 43.478 0.00 0.00 39.77 2.90
282 283 2.746904 CCAAAATGTACGATGTGCCTCA 59.253 45.455 0.00 0.00 0.00 3.86
283 284 2.477863 GCCAAAATGTACGATGTGCCTC 60.478 50.000 0.00 0.00 0.00 4.70
284 285 1.472480 GCCAAAATGTACGATGTGCCT 59.528 47.619 0.00 0.00 0.00 4.75
285 286 1.201181 TGCCAAAATGTACGATGTGCC 59.799 47.619 0.00 0.00 0.00 5.01
286 287 2.627863 TGCCAAAATGTACGATGTGC 57.372 45.000 0.00 0.00 0.00 4.57
287 288 4.484236 ACAATGCCAAAATGTACGATGTG 58.516 39.130 0.00 0.00 0.00 3.21
288 289 4.782019 ACAATGCCAAAATGTACGATGT 57.218 36.364 0.00 0.00 0.00 3.06
289 290 7.573916 TTAAACAATGCCAAAATGTACGATG 57.426 32.000 0.00 0.00 0.00 3.84
290 291 6.310224 GCTTAAACAATGCCAAAATGTACGAT 59.690 34.615 0.00 0.00 0.00 3.73
291 292 5.631512 GCTTAAACAATGCCAAAATGTACGA 59.368 36.000 0.00 0.00 0.00 3.43
292 293 5.403766 TGCTTAAACAATGCCAAAATGTACG 59.596 36.000 0.00 0.00 0.00 3.67
293 294 6.423604 AGTGCTTAAACAATGCCAAAATGTAC 59.576 34.615 0.00 0.00 0.00 2.90
294 295 6.520272 AGTGCTTAAACAATGCCAAAATGTA 58.480 32.000 0.00 0.00 0.00 2.29
295 296 5.367302 AGTGCTTAAACAATGCCAAAATGT 58.633 33.333 0.00 0.00 0.00 2.71
296 297 5.927954 AGTGCTTAAACAATGCCAAAATG 57.072 34.783 0.00 0.00 0.00 2.32
297 298 5.821995 ACAAGTGCTTAAACAATGCCAAAAT 59.178 32.000 0.00 0.00 0.00 1.82
298 299 5.181748 ACAAGTGCTTAAACAATGCCAAAA 58.818 33.333 0.00 0.00 0.00 2.44
299 300 4.764172 ACAAGTGCTTAAACAATGCCAAA 58.236 34.783 0.00 0.00 0.00 3.28
300 301 4.399004 ACAAGTGCTTAAACAATGCCAA 57.601 36.364 0.00 0.00 0.00 4.52
301 302 4.824537 TCTACAAGTGCTTAAACAATGCCA 59.175 37.500 0.00 0.00 0.00 4.92
302 303 5.371115 TCTACAAGTGCTTAAACAATGCC 57.629 39.130 0.00 0.00 0.00 4.40
306 307 9.727859 TGGTATTATCTACAAGTGCTTAAACAA 57.272 29.630 0.00 0.00 0.00 2.83
307 308 9.899661 ATGGTATTATCTACAAGTGCTTAAACA 57.100 29.630 0.00 0.00 0.00 2.83
309 310 9.337396 CCATGGTATTATCTACAAGTGCTTAAA 57.663 33.333 2.57 0.00 0.00 1.52
310 311 7.444183 GCCATGGTATTATCTACAAGTGCTTAA 59.556 37.037 14.67 0.00 0.00 1.85
311 312 6.934645 GCCATGGTATTATCTACAAGTGCTTA 59.065 38.462 14.67 0.00 0.00 3.09
312 313 5.765182 GCCATGGTATTATCTACAAGTGCTT 59.235 40.000 14.67 0.00 0.00 3.91
313 314 5.308825 GCCATGGTATTATCTACAAGTGCT 58.691 41.667 14.67 0.00 0.00 4.40
314 315 4.152402 CGCCATGGTATTATCTACAAGTGC 59.848 45.833 14.67 0.00 0.00 4.40
315 316 4.690748 CCGCCATGGTATTATCTACAAGTG 59.309 45.833 14.67 0.00 0.00 3.16
316 317 4.894784 CCGCCATGGTATTATCTACAAGT 58.105 43.478 14.67 0.00 0.00 3.16
330 331 0.455972 CGCAAAACTTACCGCCATGG 60.456 55.000 7.63 7.63 46.41 3.66
331 332 0.239879 ACGCAAAACTTACCGCCATG 59.760 50.000 0.00 0.00 0.00 3.66
332 333 0.955905 AACGCAAAACTTACCGCCAT 59.044 45.000 0.00 0.00 0.00 4.40
333 334 0.029567 CAACGCAAAACTTACCGCCA 59.970 50.000 0.00 0.00 0.00 5.69
334 335 0.662077 CCAACGCAAAACTTACCGCC 60.662 55.000 0.00 0.00 0.00 6.13
335 336 0.029700 ACCAACGCAAAACTTACCGC 59.970 50.000 0.00 0.00 0.00 5.68
336 337 2.478547 AACCAACGCAAAACTTACCG 57.521 45.000 0.00 0.00 0.00 4.02
337 338 3.771798 TCAAACCAACGCAAAACTTACC 58.228 40.909 0.00 0.00 0.00 2.85
338 339 5.278604 AGATCAAACCAACGCAAAACTTAC 58.721 37.500 0.00 0.00 0.00 2.34
339 340 5.508200 AGATCAAACCAACGCAAAACTTA 57.492 34.783 0.00 0.00 0.00 2.24
340 341 4.385358 AGATCAAACCAACGCAAAACTT 57.615 36.364 0.00 0.00 0.00 2.66
341 342 4.385358 AAGATCAAACCAACGCAAAACT 57.615 36.364 0.00 0.00 0.00 2.66
342 343 5.254842 CAAAAGATCAAACCAACGCAAAAC 58.745 37.500 0.00 0.00 0.00 2.43
343 344 4.201763 GCAAAAGATCAAACCAACGCAAAA 60.202 37.500 0.00 0.00 0.00 2.44
344 345 3.308323 GCAAAAGATCAAACCAACGCAAA 59.692 39.130 0.00 0.00 0.00 3.68
345 346 2.863137 GCAAAAGATCAAACCAACGCAA 59.137 40.909 0.00 0.00 0.00 4.85
346 347 2.468831 GCAAAAGATCAAACCAACGCA 58.531 42.857 0.00 0.00 0.00 5.24
347 348 1.792367 GGCAAAAGATCAAACCAACGC 59.208 47.619 0.00 0.00 0.00 4.84
348 349 2.403259 GGGCAAAAGATCAAACCAACG 58.597 47.619 0.00 0.00 0.00 4.10
349 350 2.766313 GGGGCAAAAGATCAAACCAAC 58.234 47.619 0.00 0.00 0.00 3.77
350 351 1.342819 CGGGGCAAAAGATCAAACCAA 59.657 47.619 0.00 0.00 0.00 3.67
351 352 0.965439 CGGGGCAAAAGATCAAACCA 59.035 50.000 0.00 0.00 0.00 3.67
352 353 0.389817 GCGGGGCAAAAGATCAAACC 60.390 55.000 0.00 0.00 0.00 3.27
353 354 0.732538 CGCGGGGCAAAAGATCAAAC 60.733 55.000 0.00 0.00 0.00 2.93
354 355 1.583986 CGCGGGGCAAAAGATCAAA 59.416 52.632 0.00 0.00 0.00 2.69
355 356 2.339556 CCGCGGGGCAAAAGATCAA 61.340 57.895 20.10 0.00 0.00 2.57
356 357 2.550699 ATCCGCGGGGCAAAAGATCA 62.551 55.000 27.83 0.12 0.00 2.92
357 358 0.534203 TATCCGCGGGGCAAAAGATC 60.534 55.000 27.83 0.00 0.00 2.75
358 359 0.106918 TTATCCGCGGGGCAAAAGAT 60.107 50.000 27.83 11.31 0.00 2.40
359 360 0.746563 CTTATCCGCGGGGCAAAAGA 60.747 55.000 27.83 2.60 0.00 2.52
360 361 1.727467 CTTATCCGCGGGGCAAAAG 59.273 57.895 27.83 16.87 0.00 2.27
361 362 2.411504 GCTTATCCGCGGGGCAAAA 61.412 57.895 27.83 4.46 0.00 2.44
362 363 2.826738 GCTTATCCGCGGGGCAAA 60.827 61.111 27.83 13.26 0.00 3.68
363 364 3.750373 GAGCTTATCCGCGGGGCAA 62.750 63.158 27.83 15.49 34.40 4.52
364 365 4.235762 GAGCTTATCCGCGGGGCA 62.236 66.667 27.83 6.34 34.40 5.36
366 367 4.664677 CCGAGCTTATCCGCGGGG 62.665 72.222 27.83 13.31 40.08 5.73
368 369 4.286320 AGCCGAGCTTATCCGCGG 62.286 66.667 22.12 22.12 46.14 6.46
369 370 3.032609 CAGCCGAGCTTATCCGCG 61.033 66.667 0.00 0.00 36.40 6.46
370 371 2.663188 CCAGCCGAGCTTATCCGC 60.663 66.667 0.00 0.00 36.40 5.54
371 372 2.663188 GCCAGCCGAGCTTATCCG 60.663 66.667 0.00 0.00 36.40 4.18
372 373 2.281139 GGCCAGCCGAGCTTATCC 60.281 66.667 0.00 0.00 36.40 2.59
373 374 2.281139 GGGCCAGCCGAGCTTATC 60.281 66.667 4.39 0.00 36.40 1.75
374 375 4.241555 CGGGCCAGCCGAGCTTAT 62.242 66.667 4.39 0.00 36.40 1.73
390 391 4.717629 TCGACACGAGGGCAAGCG 62.718 66.667 0.00 0.00 0.00 4.68
391 392 3.112709 GTCGACACGAGGGCAAGC 61.113 66.667 11.55 0.00 36.23 4.01
437 438 4.696805 GGGGTTGGGGTTGGCCTC 62.697 72.222 3.32 0.00 35.21 4.70
439 440 4.565850 TTGGGGTTGGGGTTGGCC 62.566 66.667 0.00 0.00 0.00 5.36
440 441 3.238497 GTTGGGGTTGGGGTTGGC 61.238 66.667 0.00 0.00 0.00 4.52
441 442 2.525629 GGTTGGGGTTGGGGTTGG 60.526 66.667 0.00 0.00 0.00 3.77
442 443 2.525629 GGGTTGGGGTTGGGGTTG 60.526 66.667 0.00 0.00 0.00 3.77
443 444 3.852421 GGGGTTGGGGTTGGGGTT 61.852 66.667 0.00 0.00 0.00 4.11
445 446 3.851184 TTGGGGTTGGGGTTGGGG 61.851 66.667 0.00 0.00 0.00 4.96
446 447 2.525629 GTTGGGGTTGGGGTTGGG 60.526 66.667 0.00 0.00 0.00 4.12
447 448 2.525629 GGTTGGGGTTGGGGTTGG 60.526 66.667 0.00 0.00 0.00 3.77
448 449 2.137528 GTGGTTGGGGTTGGGGTTG 61.138 63.158 0.00 0.00 0.00 3.77
449 450 2.284151 GTGGTTGGGGTTGGGGTT 59.716 61.111 0.00 0.00 0.00 4.11
450 451 3.840132 GGTGGTTGGGGTTGGGGT 61.840 66.667 0.00 0.00 0.00 4.95
451 452 3.838913 TGGTGGTTGGGGTTGGGG 61.839 66.667 0.00 0.00 0.00 4.96
452 453 2.523168 GTGGTGGTTGGGGTTGGG 60.523 66.667 0.00 0.00 0.00 4.12
453 454 2.523168 GGTGGTGGTTGGGGTTGG 60.523 66.667 0.00 0.00 0.00 3.77
454 455 2.523168 GGGTGGTGGTTGGGGTTG 60.523 66.667 0.00 0.00 0.00 3.77
455 456 3.840132 GGGGTGGTGGTTGGGGTT 61.840 66.667 0.00 0.00 0.00 4.11
529 531 1.331399 GGCGGCTTCTAGAAGGAGGT 61.331 60.000 29.22 0.00 38.80 3.85
569 595 3.953201 GGAACCCGATACACTACCG 57.047 57.895 0.00 0.00 0.00 4.02
595 627 1.595058 GGAGAGGGAGGGAGGAAGGA 61.595 65.000 0.00 0.00 0.00 3.36
599 631 2.133201 AGGGAGAGGGAGGGAGGA 59.867 66.667 0.00 0.00 0.00 3.71
602 634 4.095400 GGCAGGGAGAGGGAGGGA 62.095 72.222 0.00 0.00 0.00 4.20
609 641 4.463879 CAGTGCGGGCAGGGAGAG 62.464 72.222 0.00 0.00 0.00 3.20
611 643 4.767255 GACAGTGCGGGCAGGGAG 62.767 72.222 0.00 0.00 0.00 4.30
687 719 2.429930 CGCCAAGTTCCTCCACCA 59.570 61.111 0.00 0.00 0.00 4.17
697 729 4.572571 TTTCCCCGTGCGCCAAGT 62.573 61.111 4.18 0.00 0.00 3.16
698 730 3.267597 CTTTTCCCCGTGCGCCAAG 62.268 63.158 4.18 0.00 0.00 3.61
699 731 3.291383 CTTTTCCCCGTGCGCCAA 61.291 61.111 4.18 0.00 0.00 4.52
745 804 3.709653 TCTGGCGGTGGAAAGTATATCTT 59.290 43.478 0.00 0.00 38.10 2.40
765 828 3.195438 TCCAGCCAGGAGGAGTCT 58.805 61.111 0.00 0.00 43.07 3.24
776 839 0.179070 GAATCGGAACTCCTCCAGCC 60.179 60.000 0.00 0.00 45.74 4.85
777 840 0.179070 GGAATCGGAACTCCTCCAGC 60.179 60.000 2.97 0.00 45.74 4.85
778 841 1.490574 AGGAATCGGAACTCCTCCAG 58.509 55.000 6.26 0.00 45.74 3.86
779 842 3.711849 AGGAATCGGAACTCCTCCA 57.288 52.632 6.26 0.00 45.74 3.86
797 862 3.596046 AGAAGAGAGAGAAAGAGAGGGGA 59.404 47.826 0.00 0.00 0.00 4.81
843 934 1.304617 CCCTTTCCTCCCCTGCTTC 59.695 63.158 0.00 0.00 0.00 3.86
844 935 2.241659 CCCCTTTCCTCCCCTGCTT 61.242 63.158 0.00 0.00 0.00 3.91
845 936 2.615288 CCCCTTTCCTCCCCTGCT 60.615 66.667 0.00 0.00 0.00 4.24
846 937 2.500815 GAACCCCTTTCCTCCCCTGC 62.501 65.000 0.00 0.00 0.00 4.85
847 938 0.846870 AGAACCCCTTTCCTCCCCTG 60.847 60.000 0.00 0.00 34.32 4.45
848 939 0.846870 CAGAACCCCTTTCCTCCCCT 60.847 60.000 0.00 0.00 34.32 4.79
849 940 0.845102 TCAGAACCCCTTTCCTCCCC 60.845 60.000 0.00 0.00 34.32 4.81
850 941 1.299939 ATCAGAACCCCTTTCCTCCC 58.700 55.000 0.00 0.00 34.32 4.30
854 945 2.179427 CCCAAATCAGAACCCCTTTCC 58.821 52.381 0.00 0.00 34.32 3.13
856 947 1.644509 GCCCAAATCAGAACCCCTTT 58.355 50.000 0.00 0.00 0.00 3.11
858 949 1.000896 CGCCCAAATCAGAACCCCT 60.001 57.895 0.00 0.00 0.00 4.79
884 986 1.644786 CCAAATCAGCCGGACCGAAC 61.645 60.000 17.49 7.16 0.00 3.95
891 993 1.452108 GACCTCCCAAATCAGCCGG 60.452 63.158 0.00 0.00 0.00 6.13
916 1018 1.656652 ATCAGCGAACCCGAATCAAG 58.343 50.000 0.00 0.00 38.22 3.02
922 1024 1.445410 CGTCAATCAGCGAACCCGA 60.445 57.895 0.00 0.00 38.22 5.14
938 1040 3.782443 GGAGATGAACCGGCCCGT 61.782 66.667 0.00 0.00 0.00 5.28
939 1041 4.891727 CGGAGATGAACCGGCCCG 62.892 72.222 0.00 0.00 45.65 6.13
964 1078 4.891727 CGGACCGGCCCTCGAATG 62.892 72.222 4.86 0.00 42.43 2.67
991 1105 2.438434 GTTCCCCATGGCGACTGG 60.438 66.667 6.09 1.26 0.00 4.00
992 1106 1.746615 CAGTTCCCCATGGCGACTG 60.747 63.158 19.43 19.43 38.39 3.51
1082 1199 4.247380 GCATGAGGAGGCGGAGGG 62.247 72.222 0.00 0.00 0.00 4.30
1083 1200 1.190833 ATAGCATGAGGAGGCGGAGG 61.191 60.000 0.00 0.00 32.81 4.30
1084 1201 0.683973 AATAGCATGAGGAGGCGGAG 59.316 55.000 0.00 0.00 32.81 4.63
1085 1202 1.070758 GAAATAGCATGAGGAGGCGGA 59.929 52.381 0.00 0.00 32.81 5.54
1105 1225 9.052759 ACTGTAGTAGTGGTAAAAAGATTTGTG 57.947 33.333 0.00 0.00 38.49 3.33
1127 1247 8.584157 ACTAGTCGTACTGCTAGTATATACTGT 58.416 37.037 23.09 15.08 44.08 3.55
1128 1248 8.984891 ACTAGTCGTACTGCTAGTATATACTG 57.015 38.462 23.09 14.47 44.08 2.74
1129 1249 9.638239 GAACTAGTCGTACTGCTAGTATATACT 57.362 37.037 19.07 19.07 44.84 2.12
1130 1250 9.416794 TGAACTAGTCGTACTGCTAGTATATAC 57.583 37.037 19.63 4.60 44.84 1.47
1174 1297 4.227754 TCGGGATTTGTTTATTGGACCCTA 59.772 41.667 0.00 0.00 34.55 3.53
1181 1304 8.768955 TGTTTTTCATTCGGGATTTGTTTATTG 58.231 29.630 0.00 0.00 0.00 1.90
1195 1318 4.797868 TGTTGAGCACTTGTTTTTCATTCG 59.202 37.500 0.00 0.00 0.00 3.34
1210 1333 3.953612 ACAGAGAAATGGTTTGTTGAGCA 59.046 39.130 0.00 0.00 0.00 4.26
1216 1339 5.559148 AGAGAGACAGAGAAATGGTTTGT 57.441 39.130 0.00 0.00 0.00 2.83
1231 1354 4.020128 ACCAAACCACCAGATTAGAGAGAC 60.020 45.833 0.00 0.00 0.00 3.36
1291 1428 2.746277 CGAAGGCTGGTTTCGGGG 60.746 66.667 0.00 0.00 42.63 5.73
1322 1459 2.415893 GCAGTTGGATTGGACCGAAATG 60.416 50.000 0.00 0.00 0.00 2.32
1352 1489 1.493022 ACTGAACCTGCTGTTTACCCA 59.507 47.619 0.00 0.00 37.29 4.51
1356 1493 6.823497 AGTAGTTAACTGAACCTGCTGTTTA 58.177 36.000 18.56 0.00 39.02 2.01
1374 1511 7.709149 ACCGGATTAAGTTACTACAGTAGTT 57.291 36.000 18.56 3.32 40.14 2.24
1395 1532 3.886123 ACTTGATATTTGGGAGGAACCG 58.114 45.455 0.00 0.00 40.11 4.44
1403 1540 6.715264 GGGTGGTATTCTACTTGATATTTGGG 59.285 42.308 0.00 0.00 0.00 4.12
1421 1558 4.468510 AGACGAGTGATTTATTGGGTGGTA 59.531 41.667 0.00 0.00 0.00 3.25
1422 1559 3.263425 AGACGAGTGATTTATTGGGTGGT 59.737 43.478 0.00 0.00 0.00 4.16
1423 1560 3.623060 CAGACGAGTGATTTATTGGGTGG 59.377 47.826 0.00 0.00 0.00 4.61
1424 1561 4.093408 CACAGACGAGTGATTTATTGGGTG 59.907 45.833 0.00 0.00 42.05 4.61
1427 1606 5.862924 AACACAGACGAGTGATTTATTGG 57.137 39.130 12.76 0.00 42.05 3.16
1431 1655 6.978338 AGAGTTAACACAGACGAGTGATTTA 58.022 36.000 8.61 2.02 42.05 1.40
1440 1664 4.658713 TCGTAGAGAGTTAACACAGACG 57.341 45.455 8.61 12.01 0.00 4.18
1460 1684 6.626302 AGTGAAGAGATGCAAAGTAGTACTC 58.374 40.000 2.58 0.00 0.00 2.59
1461 1685 6.597832 AGTGAAGAGATGCAAAGTAGTACT 57.402 37.500 0.00 0.00 0.00 2.73
1462 1686 7.659652 AAAGTGAAGAGATGCAAAGTAGTAC 57.340 36.000 0.00 0.00 0.00 2.73
1463 1687 8.677148 AAAAAGTGAAGAGATGCAAAGTAGTA 57.323 30.769 0.00 0.00 0.00 1.82
1464 1688 7.573968 AAAAAGTGAAGAGATGCAAAGTAGT 57.426 32.000 0.00 0.00 0.00 2.73
1485 1709 7.012610 CCAGTTCTAGTTTTAGTTCCGGAAAAA 59.987 37.037 20.79 14.24 0.00 1.94
1491 1715 4.689345 CACCCAGTTCTAGTTTTAGTTCCG 59.311 45.833 0.00 0.00 0.00 4.30
1539 1763 1.881973 GTGGCTCAACAATCTGAAGCA 59.118 47.619 0.00 0.00 0.00 3.91
1543 1767 6.003326 TGAATTTAGTGGCTCAACAATCTGA 58.997 36.000 0.00 0.00 0.00 3.27
1544 1768 6.072286 ACTGAATTTAGTGGCTCAACAATCTG 60.072 38.462 1.44 0.00 0.00 2.90
1548 1772 4.261572 GCACTGAATTTAGTGGCTCAACAA 60.262 41.667 26.29 0.00 46.32 2.83
1550 1774 3.253188 TGCACTGAATTTAGTGGCTCAAC 59.747 43.478 26.29 12.58 46.32 3.18
1551 1775 3.485394 TGCACTGAATTTAGTGGCTCAA 58.515 40.909 26.29 6.05 46.32 3.02
1552 1776 3.076621 CTGCACTGAATTTAGTGGCTCA 58.923 45.455 26.29 16.86 46.32 4.26
1556 1787 2.553602 TGTGCTGCACTGAATTTAGTGG 59.446 45.455 30.43 14.83 46.32 4.00
1594 1825 8.752005 CAAAGGATGGACTGAATTTTCCTATA 57.248 34.615 0.00 0.00 33.33 1.31
1595 1826 7.651027 CAAAGGATGGACTGAATTTTCCTAT 57.349 36.000 0.00 0.00 33.33 2.57
1655 1886 2.113860 TCCTTACACATGAAGCAGCC 57.886 50.000 0.00 0.00 0.00 4.85
1656 1887 3.691118 TGATTCCTTACACATGAAGCAGC 59.309 43.478 0.00 0.00 31.48 5.25
1716 1947 6.743575 AAGTTAACAGAAGCATGTACATCC 57.256 37.500 5.07 0.00 31.70 3.51
1723 1960 8.261492 AGTCAGATAAAGTTAACAGAAGCATG 57.739 34.615 8.61 0.00 0.00 4.06
1731 1969 9.273016 CAGAGGAAAAGTCAGATAAAGTTAACA 57.727 33.333 8.61 0.00 0.00 2.41
1732 1970 9.490379 TCAGAGGAAAAGTCAGATAAAGTTAAC 57.510 33.333 0.00 0.00 0.00 2.01
1788 2026 6.684686 CATCAAAATTTGAGCTTTCCTCTCA 58.315 36.000 14.10 0.00 43.98 3.27
1789 2027 5.575995 GCATCAAAATTTGAGCTTTCCTCTC 59.424 40.000 14.10 0.00 43.98 3.20
1839 2080 5.182001 CAGGACAGTCAATAACTTTGAAGGG 59.818 44.000 2.17 0.00 35.45 3.95
1886 2133 3.268330 TCGCTCTCTAGTTTCGCTTAGA 58.732 45.455 0.00 0.00 0.00 2.10
1900 2147 5.388890 CGGACTAAATATGCATTTCGCTCTC 60.389 44.000 3.54 0.00 43.06 3.20
1975 2223 6.302269 AGTTGATGTCCCTTATCATTCATCC 58.698 40.000 0.00 0.00 34.76 3.51
1979 2227 9.956720 CAAATAAGTTGATGTCCCTTATCATTC 57.043 33.333 0.00 0.00 39.87 2.67
2030 2282 4.517285 GATGATGGTTCAGACTTAGCCAA 58.483 43.478 0.00 0.00 34.73 4.52
2033 2285 4.414337 AGGATGATGGTTCAGACTTAGC 57.586 45.455 0.00 0.00 34.73 3.09
2034 2286 9.650539 CATTATAGGATGATGGTTCAGACTTAG 57.349 37.037 0.00 0.00 34.73 2.18
2035 2287 9.379770 TCATTATAGGATGATGGTTCAGACTTA 57.620 33.333 0.00 0.00 34.73 2.24
2408 2663 6.928520 ACTGAAATGAACAAGAAATCCCATC 58.071 36.000 0.00 0.00 0.00 3.51
2424 2679 5.749588 TCAGACACAATGCAAAACTGAAATG 59.250 36.000 0.00 0.00 31.51 2.32
2466 2722 2.076863 GTAATTCACTTCAGCCTGCGT 58.923 47.619 0.00 0.00 0.00 5.24
2537 2793 1.069090 AAGCCGCTGTTCGTCTTCA 59.931 52.632 0.00 0.00 29.49 3.02
2672 2942 4.908601 ATGTGTACTCCCTGAATGTTCA 57.091 40.909 0.00 0.00 35.57 3.18
2673 2943 5.123979 GGAAATGTGTACTCCCTGAATGTTC 59.876 44.000 0.00 0.00 0.00 3.18
2744 3014 1.217244 GAGAAACGCGAGCCCCTTA 59.783 57.895 15.93 0.00 0.00 2.69
2747 3017 4.388499 TGGAGAAACGCGAGCCCC 62.388 66.667 15.93 7.76 0.00 5.80
2792 3062 7.895429 AGGAGGATATTTGAGGTTTTGAAATCA 59.105 33.333 0.00 0.00 0.00 2.57
2807 3077 9.830186 ATATATACCGCATCTAGGAGGATATTT 57.170 33.333 0.00 0.00 0.00 1.40
2858 3128 9.099454 GATAGAGATATTTTTCGGACACAAAGT 57.901 33.333 0.00 0.00 0.00 2.66
2885 3155 0.169230 GCGTGACTGTCAGATCGACT 59.831 55.000 19.38 0.95 45.60 4.18
2924 3194 1.354040 AATCTGAGAGCTTTGCGTCG 58.646 50.000 0.00 0.00 0.00 5.12
3083 3353 8.125448 GTGTGGTTAGATTTTCAGCAAGATATC 58.875 37.037 0.00 0.00 0.00 1.63
3110 3516 0.247814 CGCAATCACGATTCAGGCAC 60.248 55.000 0.00 0.00 34.06 5.01
3112 3518 0.447801 AACGCAATCACGATTCAGGC 59.552 50.000 0.00 0.00 36.70 4.85
3121 3527 1.195448 CCAGAGTGACAACGCAATCAC 59.805 52.381 5.61 5.61 44.64 3.06
3184 3590 5.048083 GCACATGAGGATTGAAAGGTTGTAA 60.048 40.000 0.00 0.00 0.00 2.41
3217 3623 7.750903 GGTAGATGTGTTTAGATTTTCAGCAAC 59.249 37.037 0.00 0.00 0.00 4.17
3238 3644 1.202592 TGCAAGCACGTTTCAGGTAGA 60.203 47.619 0.00 0.00 0.00 2.59
3248 3654 1.284982 GAGTGACGATGCAAGCACGT 61.285 55.000 17.70 17.70 42.84 4.49
3251 3657 1.737735 CGGAGTGACGATGCAAGCA 60.738 57.895 0.00 0.00 35.47 3.91
3253 3659 0.670546 AACCGGAGTGACGATGCAAG 60.671 55.000 9.46 0.00 35.47 4.01
3260 3666 3.103911 GACGCAACCGGAGTGACG 61.104 66.667 9.46 15.31 39.22 4.35
3266 3672 3.960237 GTTGATGACGCAACCGGA 58.040 55.556 9.46 0.00 41.69 5.14
3678 4085 3.793144 CGGTTGCTGCTCGGCTTC 61.793 66.667 0.00 0.00 0.00 3.86
3715 4122 1.895020 TTCCCCTTGGTCGACGATGG 61.895 60.000 21.14 21.14 0.00 3.51
3717 4124 1.189524 TGTTCCCCTTGGTCGACGAT 61.190 55.000 9.92 0.00 0.00 3.73
3750 4157 0.318107 GTCAAACCGGTCTCGACGAA 60.318 55.000 8.04 0.00 39.00 3.85
3753 4160 4.256813 GGTCAAACCGGTCTCGAC 57.743 61.111 8.04 14.82 39.00 4.20
3909 4316 4.065088 CACTAGAAGCTGCAAAGGTACAA 58.935 43.478 1.02 0.00 0.00 2.41
3914 4321 2.227388 CCAACACTAGAAGCTGCAAAGG 59.773 50.000 1.02 0.00 0.00 3.11
3971 4378 9.772973 TGACAAAAATAACTACATACAGACACT 57.227 29.630 0.00 0.00 0.00 3.55
3986 4393 4.754114 GCAACCAGGCATTGACAAAAATAA 59.246 37.500 0.00 0.00 0.00 1.40
3988 4395 3.140623 GCAACCAGGCATTGACAAAAAT 58.859 40.909 0.00 0.00 0.00 1.82
4030 4437 3.420893 TGATGTAAACAAAGCCTCTGGG 58.579 45.455 0.00 0.00 0.00 4.45
4171 4610 4.039004 TCAACAAAATGGTCAACATCCCTG 59.961 41.667 0.00 0.00 39.40 4.45
4233 4749 3.893753 TTCCCCAACATTCTCTGGAAA 57.106 42.857 0.00 0.00 34.35 3.13
4258 4774 7.147811 TGGCCAACTGTTTAAAATTACAGAAGT 60.148 33.333 0.61 0.00 43.45 3.01
4300 4822 2.231235 GCTGAACCCACCAAGTAAATGG 59.769 50.000 0.00 0.00 46.38 3.16
4301 4823 2.231235 GGCTGAACCCACCAAGTAAATG 59.769 50.000 0.00 0.00 0.00 2.32
4349 4872 2.530460 TGCCCAGATAATTTGGCTGT 57.470 45.000 0.00 0.00 44.32 4.40
4456 4985 2.517402 CGACCGAGGAGGAGGAGG 60.517 72.222 0.00 0.00 45.00 4.30
4457 4986 1.820481 GTCGACCGAGGAGGAGGAG 60.820 68.421 3.51 0.00 45.00 3.69
4458 4987 2.271497 GTCGACCGAGGAGGAGGA 59.729 66.667 3.51 0.00 45.00 3.71
4716 7950 5.793817 TCAGCTTTGCTAGTCAGTTAATGA 58.206 37.500 0.00 0.00 36.40 2.57
4717 7951 6.674694 ATCAGCTTTGCTAGTCAGTTAATG 57.325 37.500 0.00 0.00 36.40 1.90
4741 7975 7.449395 CAGGAACAGAGAAGATGAGATCTATCT 59.551 40.741 0.00 2.18 39.08 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.