Multiple sequence alignment - TraesCS1A01G029900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G029900 chr1A 100.000 5021 0 0 376 5396 13971269 13976289 0.000000e+00 9273.0
1 TraesCS1A01G029900 chr1A 100.000 31 0 0 1 31 13970894 13970924 2.100000e-04 58.4
2 TraesCS1A01G029900 chr1D 89.130 3643 286 60 376 3976 11849258 11852832 0.000000e+00 4433.0
3 TraesCS1A01G029900 chr1D 83.742 898 109 24 4518 5396 11853427 11854306 0.000000e+00 815.0
4 TraesCS1A01G029900 chr1D 87.291 299 31 4 4222 4515 11853088 11853384 8.660000e-88 335.0
5 TraesCS1A01G029900 chr1D 90.789 76 6 1 3991 4066 11852910 11852984 3.440000e-17 100.0
6 TraesCS1A01G029900 chr1D 100.000 29 0 0 1 29 11849231 11849259 3.000000e-03 54.7
7 TraesCS1A01G029900 chr1B 89.826 1720 151 17 2267 3978 17683395 17685098 0.000000e+00 2185.0
8 TraesCS1A01G029900 chr1B 84.781 1071 97 33 576 1616 17680850 17681884 0.000000e+00 1014.0
9 TraesCS1A01G029900 chr1B 82.550 447 63 10 4081 4515 17685232 17685675 3.940000e-101 379.0
10 TraesCS1A01G029900 chr1B 88.793 116 13 0 376 491 471198742 471198857 5.630000e-30 143.0
11 TraesCS1A01G029900 chr5D 83.147 807 120 12 2345 3146 423266034 423266829 0.000000e+00 723.0
12 TraesCS1A01G029900 chr5D 87.730 326 27 11 1022 1342 423263136 423263453 8.540000e-98 368.0
13 TraesCS1A01G029900 chr5D 81.587 315 41 9 3665 3971 423374624 423374929 1.500000e-60 244.0
14 TraesCS1A01G029900 chr5A 83.002 806 121 12 2346 3146 536771827 536772621 0.000000e+00 715.0
15 TraesCS1A01G029900 chr5A 84.424 642 100 0 2345 2986 536884306 536884947 2.740000e-177 632.0
16 TraesCS1A01G029900 chr5A 85.629 334 34 10 1022 1342 536768501 536768833 6.690000e-89 339.0
17 TraesCS1A01G029900 chr5A 85.892 241 32 1 1102 1342 536879018 536879256 6.940000e-64 255.0
18 TraesCS1A01G029900 chr5B 81.931 808 127 12 2345 3146 510883037 510883831 0.000000e+00 665.0
19 TraesCS1A01G029900 chr5B 87.538 329 31 7 1022 1342 510880256 510880582 6.600000e-99 372.0
20 TraesCS1A01G029900 chr5B 82.857 245 42 0 3353 3597 510883912 510884156 2.530000e-53 220.0
21 TraesCS1A01G029900 chr3B 82.387 687 110 8 2343 3025 731484975 731485654 6.020000e-164 588.0
22 TraesCS1A01G029900 chr3B 87.854 247 30 0 1101 1347 795810126 795809880 1.900000e-74 291.0
23 TraesCS1A01G029900 chr3B 74.622 595 145 6 2345 2936 795802421 795801830 1.930000e-64 257.0
24 TraesCS1A01G029900 chr3B 84.436 257 33 7 1103 1354 795568007 795568261 4.170000e-61 246.0
25 TraesCS1A01G029900 chr3B 81.915 282 46 5 3330 3610 731485862 731486139 3.250000e-57 233.0
26 TraesCS1A01G029900 chr2D 84.839 310 43 4 2345 2652 196860094 196859787 5.250000e-80 309.0
27 TraesCS1A01G029900 chr2B 84.839 310 43 4 2345 2652 254288461 254288154 5.250000e-80 309.0
28 TraesCS1A01G029900 chr3D 86.434 258 32 3 1103 1360 593226635 593226381 4.120000e-71 279.0
29 TraesCS1A01G029900 chr3A 86.122 245 32 2 1103 1346 724496641 724496398 4.140000e-66 263.0
30 TraesCS1A01G029900 chr3A 74.110 618 149 9 2347 2958 724493554 724492942 1.500000e-60 244.0
31 TraesCS1A01G029900 chr3A 83.077 260 37 7 1103 1358 724482623 724482879 4.200000e-56 230.0
32 TraesCS1A01G029900 chr3A 85.714 119 16 1 376 494 222050166 222050049 2.040000e-24 124.0
33 TraesCS1A01G029900 chr7D 86.861 137 18 0 376 512 59859738 59859602 2.600000e-33 154.0
34 TraesCS1A01G029900 chr7D 93.617 47 3 0 376 422 88743104 88743150 2.700000e-08 71.3
35 TraesCS1A01G029900 chr4A 88.034 117 12 2 376 491 628931355 628931470 2.620000e-28 137.0
36 TraesCS1A01G029900 chr6D 100.000 28 0 0 1033 1060 61522839 61522866 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G029900 chr1A 13970894 13976289 5395 False 4665.700000 9273 100.000000 1 5396 2 chr1A.!!$F1 5395
1 TraesCS1A01G029900 chr1D 11849231 11854306 5075 False 1147.540000 4433 90.190400 1 5396 5 chr1D.!!$F1 5395
2 TraesCS1A01G029900 chr1B 17680850 17685675 4825 False 1192.666667 2185 85.719000 576 4515 3 chr1B.!!$F2 3939
3 TraesCS1A01G029900 chr5D 423263136 423266829 3693 False 545.500000 723 85.438500 1022 3146 2 chr5D.!!$F2 2124
4 TraesCS1A01G029900 chr5A 536884306 536884947 641 False 632.000000 632 84.424000 2345 2986 1 chr5A.!!$F2 641
5 TraesCS1A01G029900 chr5A 536768501 536772621 4120 False 527.000000 715 84.315500 1022 3146 2 chr5A.!!$F3 2124
6 TraesCS1A01G029900 chr5B 510880256 510884156 3900 False 419.000000 665 84.108667 1022 3597 3 chr5B.!!$F1 2575
7 TraesCS1A01G029900 chr3B 731484975 731486139 1164 False 410.500000 588 82.151000 2343 3610 2 chr3B.!!$F2 1267
8 TraesCS1A01G029900 chr3B 795801830 795802421 591 True 257.000000 257 74.622000 2345 2936 1 chr3B.!!$R1 591
9 TraesCS1A01G029900 chr3A 724492942 724496641 3699 True 253.500000 263 80.116000 1103 2958 2 chr3A.!!$R2 1855

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
849 859 0.094046 AAAAGACGCGCGAATTACGG 59.906 50.0 39.36 4.66 42.83 4.02 F
2708 9171 0.038526 ACCTCGCCGTCTACAAGTTG 60.039 55.0 0.00 0.00 0.00 3.16 F
2867 9330 0.185416 TGCCCCAGTTTTTCCGGTTA 59.815 50.0 0.00 0.00 0.00 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2733 9196 0.250209 CAGCTGGCGCTAAGGATGAT 60.250 55.000 7.64 0.0 46.99 2.45 R
3560 10056 0.107703 GGATGCCGTTGAGGATGACA 60.108 55.000 0.00 0.0 45.00 3.58 R
4731 11345 1.000955 AGAGCGACTACCAAACACCTG 59.999 52.381 0.00 0.0 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 0.390472 CTCGTGCCCTCCTGAAGTTC 60.390 60.000 0.00 0.00 0.00 3.01
30 31 1.376037 CGTGCCCTCCTGAAGTTCC 60.376 63.158 0.00 0.00 0.00 3.62
405 406 8.831550 CCCTAAAATGACTAGCTAGATTTTGAC 58.168 37.037 27.47 13.38 31.94 3.18
412 413 6.134040 ACTAGCTAGATTTTGACTACGTCC 57.866 41.667 27.45 0.00 0.00 4.79
416 417 7.108841 AGCTAGATTTTGACTACGTCCAATA 57.891 36.000 0.00 0.00 0.00 1.90
440 441 6.456447 TGAGTAATAAAAGAACCACGTTCG 57.544 37.500 0.00 0.00 45.96 3.95
451 452 5.579718 AGAACCACGTTCGTCTAGATTATG 58.420 41.667 0.00 0.00 45.96 1.90
452 453 4.303086 ACCACGTTCGTCTAGATTATGG 57.697 45.455 0.00 1.57 33.13 2.74
460 461 6.579292 CGTTCGTCTAGATTATGGTTGATCTC 59.421 42.308 0.00 0.00 34.60 2.75
461 462 7.520776 CGTTCGTCTAGATTATGGTTGATCTCT 60.521 40.741 0.00 0.00 34.60 3.10
499 503 9.869757 AGCATATTAAAACCTATTTGTTTCACC 57.130 29.630 0.00 0.00 37.46 4.02
517 521 6.688637 TTCACCAATCTGCATCATTCTTAG 57.311 37.500 0.00 0.00 0.00 2.18
518 522 5.993055 TCACCAATCTGCATCATTCTTAGA 58.007 37.500 0.00 0.00 0.00 2.10
519 523 6.417258 TCACCAATCTGCATCATTCTTAGAA 58.583 36.000 0.00 0.00 0.00 2.10
520 524 6.885918 TCACCAATCTGCATCATTCTTAGAAA 59.114 34.615 0.00 0.00 0.00 2.52
617 621 3.871006 CACATGCACCATATGACGTTACT 59.129 43.478 3.65 0.00 0.00 2.24
623 627 4.417506 CACCATATGACGTTACTTGTCGA 58.582 43.478 3.65 0.00 39.22 4.20
718 722 0.392998 GCAAGGCTTAGCTGGTAGCA 60.393 55.000 16.05 0.00 45.56 3.49
736 740 2.113139 CCAGACCCTTGGCACGTT 59.887 61.111 0.00 0.00 0.00 3.99
770 774 4.886925 GCGCGCGCATAAACTGGG 62.887 66.667 46.11 12.36 41.49 4.45
789 793 0.872388 GTCGTGGCGATCCTTTTTGT 59.128 50.000 0.00 0.00 38.42 2.83
791 795 2.481185 GTCGTGGCGATCCTTTTTGTTA 59.519 45.455 0.00 0.00 38.42 2.41
849 859 0.094046 AAAAGACGCGCGAATTACGG 59.906 50.000 39.36 4.66 42.83 4.02
850 860 2.287637 AAAGACGCGCGAATTACGGC 62.288 55.000 39.36 5.28 42.83 5.68
851 861 4.275344 GACGCGCGAATTACGGCC 62.275 66.667 39.36 9.25 42.83 6.13
854 864 4.275344 GCGCGAATTACGGCCGAC 62.275 66.667 35.90 15.63 42.83 4.79
855 865 2.881827 CGCGAATTACGGCCGACA 60.882 61.111 35.90 18.56 42.83 4.35
856 866 2.699212 GCGAATTACGGCCGACAC 59.301 61.111 35.90 16.35 42.83 3.67
857 867 1.808390 GCGAATTACGGCCGACACT 60.808 57.895 35.90 12.54 42.83 3.55
859 869 0.179145 CGAATTACGGCCGACACTCT 60.179 55.000 35.90 11.18 38.46 3.24
860 870 1.557651 GAATTACGGCCGACACTCTC 58.442 55.000 35.90 15.91 0.00 3.20
861 871 0.175073 AATTACGGCCGACACTCTCC 59.825 55.000 35.90 0.00 0.00 3.71
862 872 2.001361 ATTACGGCCGACACTCTCCG 62.001 60.000 35.90 0.02 46.61 4.63
865 875 4.436998 GGCCGACACTCTCCGGTG 62.437 72.222 0.00 0.00 46.84 4.94
866 876 4.436998 GCCGACACTCTCCGGTGG 62.437 72.222 0.00 0.00 46.84 4.61
867 877 4.436998 CCGACACTCTCCGGTGGC 62.437 72.222 0.00 0.00 41.48 5.01
868 878 3.374402 CGACACTCTCCGGTGGCT 61.374 66.667 0.00 0.00 42.63 4.75
870 880 3.941657 GACACTCTCCGGTGGCTGC 62.942 68.421 0.00 0.00 41.65 5.25
873 883 4.379243 CTCTCCGGTGGCTGCGTT 62.379 66.667 0.00 0.00 0.00 4.84
930 958 1.011794 GCGCTGCGTTCATAAGAGC 60.012 57.895 24.04 0.00 0.00 4.09
936 964 2.053898 GTTCATAAGAGCGCGCGC 60.054 61.111 45.10 45.10 42.33 6.86
961 996 0.613292 AGAGTGGATCACAGCCGACT 60.613 55.000 0.00 0.00 36.74 4.18
969 1004 1.214062 CACAGCCGACTCTCTCCAC 59.786 63.158 0.00 0.00 0.00 4.02
992 1029 2.281070 CAGTTGCTCACAGCCGGT 60.281 61.111 1.90 0.00 41.51 5.28
1126 1184 1.267574 GGAGAGCATCCTGGGTGACA 61.268 60.000 12.09 0.00 45.64 3.58
1127 1185 0.835941 GAGAGCATCCTGGGTGACAT 59.164 55.000 12.09 0.00 33.66 3.06
1133 1191 1.626356 ATCCTGGGTGACATGTCGGG 61.626 60.000 20.54 12.05 0.00 5.14
1389 2628 0.165944 GTCCAAACAGTTGATCGCCG 59.834 55.000 0.00 0.00 36.83 6.46
1454 3073 2.866762 GAGTGTTACTTCATGATCGGGC 59.133 50.000 0.00 0.00 0.00 6.13
1523 3147 0.730834 CTTATCTCGCGATCCGGCTG 60.731 60.000 10.36 0.00 37.59 4.85
1541 3165 4.028490 TGGGTTTCGGCGAGCCAT 62.028 61.111 25.97 0.00 39.58 4.40
1696 3734 0.726787 TGTAGCAAGTCGTACGCGTG 60.727 55.000 24.59 14.65 39.49 5.34
1701 3739 0.158096 CAAGTCGTACGCGTGTGAAC 59.842 55.000 24.59 11.28 39.49 3.18
1824 4175 2.818130 TGGCAATTCTTTCTGGTTGC 57.182 45.000 0.00 0.00 44.55 4.17
1848 5224 4.298332 CCTATGTTGGTTTTGCACAACTC 58.702 43.478 14.95 6.50 45.36 3.01
1986 5785 4.824479 ATACATGTCACCTCATCACACA 57.176 40.909 0.00 0.00 0.00 3.72
1987 5786 2.771089 ACATGTCACCTCATCACACAC 58.229 47.619 0.00 0.00 0.00 3.82
1989 5788 1.127343 TGTCACCTCATCACACACCA 58.873 50.000 0.00 0.00 0.00 4.17
1992 5791 2.027745 GTCACCTCATCACACACCATCT 60.028 50.000 0.00 0.00 0.00 2.90
2048 5849 0.533491 ATGCATGCATGGAAAACGCT 59.467 45.000 31.74 4.30 35.03 5.07
2054 5855 4.083110 GCATGCATGGAAAACGCTATCTAT 60.083 41.667 27.34 0.00 0.00 1.98
2085 5886 1.530720 TCAACATGCACACATCACGTC 59.469 47.619 0.00 0.00 32.87 4.34
2088 5889 1.264020 ACATGCACACATCACGTCAAC 59.736 47.619 0.00 0.00 32.87 3.18
2102 5903 5.242434 TCACGTCAACCCCAATATATATGC 58.758 41.667 0.00 0.00 0.00 3.14
2110 5911 5.902760 ACCCCAATATATATGCCAACATGT 58.097 37.500 0.00 0.00 37.04 3.21
2184 6010 4.545610 TCAAATTTTCACATGTTCTCGCC 58.454 39.130 0.00 0.00 0.00 5.54
2191 6017 1.154413 CATGTTCTCGCCGCAACAC 60.154 57.895 3.94 0.00 35.37 3.32
2201 6027 4.101790 CGCAACACGTGGGGCATC 62.102 66.667 26.21 8.05 36.54 3.91
2202 6028 2.983030 GCAACACGTGGGGCATCA 60.983 61.111 21.57 0.00 0.00 3.07
2203 6029 2.342650 GCAACACGTGGGGCATCAT 61.343 57.895 21.57 0.00 0.00 2.45
2204 6030 1.802636 CAACACGTGGGGCATCATC 59.197 57.895 21.57 0.00 0.00 2.92
2205 6031 0.677731 CAACACGTGGGGCATCATCT 60.678 55.000 21.57 0.00 0.00 2.90
2206 6032 0.908910 AACACGTGGGGCATCATCTA 59.091 50.000 21.57 0.00 0.00 1.98
2207 6033 0.465705 ACACGTGGGGCATCATCTAG 59.534 55.000 21.57 0.00 0.00 2.43
2208 6034 0.465705 CACGTGGGGCATCATCTAGT 59.534 55.000 7.95 0.00 0.00 2.57
2209 6035 1.134401 CACGTGGGGCATCATCTAGTT 60.134 52.381 7.95 0.00 0.00 2.24
2210 6036 1.559682 ACGTGGGGCATCATCTAGTTT 59.440 47.619 0.00 0.00 0.00 2.66
2211 6037 2.026262 ACGTGGGGCATCATCTAGTTTT 60.026 45.455 0.00 0.00 0.00 2.43
2212 6038 3.199071 ACGTGGGGCATCATCTAGTTTTA 59.801 43.478 0.00 0.00 0.00 1.52
2213 6039 3.560068 CGTGGGGCATCATCTAGTTTTAC 59.440 47.826 0.00 0.00 0.00 2.01
2214 6040 4.683400 CGTGGGGCATCATCTAGTTTTACT 60.683 45.833 0.00 0.00 0.00 2.24
2215 6041 5.452776 CGTGGGGCATCATCTAGTTTTACTA 60.453 44.000 0.00 0.00 0.00 1.82
2228 6054 2.742589 GTTTTACTAGAGCAGCCACACC 59.257 50.000 0.00 0.00 0.00 4.16
2242 6068 0.950836 CACACCAGGCATCGTTTTGA 59.049 50.000 0.00 0.00 0.00 2.69
2252 6078 6.089417 CCAGGCATCGTTTTGATTTCTTTTAC 59.911 38.462 0.00 0.00 34.13 2.01
2259 6085 7.631822 TCGTTTTGATTTCTTTTACGACATCA 58.368 30.769 0.00 0.00 32.39 3.07
2639 9102 2.515290 CAGAGCATCATGGCGCCA 60.515 61.111 34.80 34.80 37.82 5.69
2708 9171 0.038526 ACCTCGCCGTCTACAAGTTG 60.039 55.000 0.00 0.00 0.00 3.16
2733 9196 2.308722 GGGATCTTGGGTGCCTCCA 61.309 63.158 0.00 0.00 38.11 3.86
2867 9330 0.185416 TGCCCCAGTTTTTCCGGTTA 59.815 50.000 0.00 0.00 0.00 2.85
2900 9363 1.941209 GCCGTCATGCTCTGTCTTGAA 60.941 52.381 0.00 0.00 0.00 2.69
2975 9438 4.038080 TCGCTTGCGTCGCTCTCA 62.038 61.111 19.50 0.00 0.00 3.27
2990 9453 4.047822 CGCTCTCAATCTGGTAATCACTC 58.952 47.826 0.00 0.00 0.00 3.51
2992 9455 5.009110 CGCTCTCAATCTGGTAATCACTCTA 59.991 44.000 0.00 0.00 0.00 2.43
3114 9606 1.613836 GGTGGGCAATCATGATCTCC 58.386 55.000 9.06 12.51 0.00 3.71
3160 9652 9.128404 CCAGGTAAAGTTACTAAGGTTTCTTTT 57.872 33.333 1.48 0.00 34.59 2.27
3185 9681 6.709018 TCCTTTTGAGGGAAAAAGTTACTG 57.291 37.500 8.21 0.00 42.90 2.74
3196 9692 7.448777 AGGGAAAAAGTTACTGAGGATTCTTTC 59.551 37.037 0.00 0.00 0.00 2.62
3234 9730 7.558161 TTCATTGAACAGTTATATGGAGCTG 57.442 36.000 0.00 0.00 35.31 4.24
3238 9734 9.276590 CATTGAACAGTTATATGGAGCTGATAA 57.723 33.333 0.00 0.00 33.57 1.75
3243 9739 6.998673 ACAGTTATATGGAGCTGATAAAACCC 59.001 38.462 0.00 0.00 33.57 4.11
3249 9745 2.369394 GAGCTGATAAAACCCCACTGG 58.631 52.381 0.00 0.00 41.37 4.00
3260 9756 3.798794 CCCACTGGGCGAATATTCA 57.201 52.632 15.57 0.00 35.35 2.57
3266 9762 1.071385 CTGGGCGAATATTCAGCCTCT 59.929 52.381 31.59 0.00 42.43 3.69
3268 9764 2.906389 TGGGCGAATATTCAGCCTCTAT 59.094 45.455 31.59 0.00 42.43 1.98
3272 9768 6.040955 TGGGCGAATATTCAGCCTCTATATAG 59.959 42.308 31.59 3.10 42.43 1.31
3301 9797 3.125316 CACACAACCAATTTGGCAAGAG 58.875 45.455 15.49 6.77 42.67 2.85
3302 9798 2.102925 ACACAACCAATTTGGCAAGAGG 59.897 45.455 15.49 6.58 42.67 3.69
3312 9808 6.222389 CAATTTGGCAAGAGGATTAACAACA 58.778 36.000 0.00 0.00 0.00 3.33
3515 10011 1.007964 CTATGCTGACGGCGAGGAG 60.008 63.158 16.62 7.07 45.43 3.69
3542 10038 1.220749 GGCGGTATCCAAGCTGACA 59.779 57.895 0.00 0.00 0.00 3.58
3551 10047 1.374631 CAAGCTGACACCGCTGCTA 60.375 57.895 0.00 0.00 41.39 3.49
3597 10093 0.320421 CCAACCCGTACTGTCAGGTG 60.320 60.000 4.53 0.00 31.45 4.00
3609 10105 4.526970 ACTGTCAGGTGAACAGAAAACAT 58.473 39.130 10.04 0.00 35.62 2.71
3612 10108 5.890334 TGTCAGGTGAACAGAAAACATTTC 58.110 37.500 0.00 0.00 0.00 2.17
3613 10109 5.163561 TGTCAGGTGAACAGAAAACATTTCC 60.164 40.000 0.00 0.00 0.00 3.13
3614 10110 4.340950 TCAGGTGAACAGAAAACATTTCCC 59.659 41.667 0.00 0.00 0.00 3.97
3615 10111 4.342092 CAGGTGAACAGAAAACATTTCCCT 59.658 41.667 0.00 0.00 0.00 4.20
3617 10113 5.770162 AGGTGAACAGAAAACATTTCCCTAG 59.230 40.000 0.00 0.00 0.00 3.02
3619 10115 6.294010 GGTGAACAGAAAACATTTCCCTAGTC 60.294 42.308 0.00 0.00 0.00 2.59
3621 10117 4.969484 ACAGAAAACATTTCCCTAGTCGT 58.031 39.130 0.00 0.00 0.00 4.34
3625 10121 2.667473 ACATTTCCCTAGTCGTTCGG 57.333 50.000 0.00 0.00 0.00 4.30
3627 10123 2.301009 ACATTTCCCTAGTCGTTCGGTT 59.699 45.455 0.00 0.00 0.00 4.44
3629 10125 3.855689 TTTCCCTAGTCGTTCGGTTAG 57.144 47.619 0.00 0.00 0.00 2.34
3631 10127 2.795329 TCCCTAGTCGTTCGGTTAGTT 58.205 47.619 0.00 0.00 0.00 2.24
3632 10128 3.950397 TCCCTAGTCGTTCGGTTAGTTA 58.050 45.455 0.00 0.00 0.00 2.24
3633 10129 4.331968 TCCCTAGTCGTTCGGTTAGTTAA 58.668 43.478 0.00 0.00 0.00 2.01
3634 10130 4.949856 TCCCTAGTCGTTCGGTTAGTTAAT 59.050 41.667 0.00 0.00 0.00 1.40
3635 10131 5.418840 TCCCTAGTCGTTCGGTTAGTTAATT 59.581 40.000 0.00 0.00 0.00 1.40
3636 10132 6.071391 TCCCTAGTCGTTCGGTTAGTTAATTT 60.071 38.462 0.00 0.00 0.00 1.82
3637 10133 7.122055 TCCCTAGTCGTTCGGTTAGTTAATTTA 59.878 37.037 0.00 0.00 0.00 1.40
3639 10135 7.970614 CCTAGTCGTTCGGTTAGTTAATTTAGT 59.029 37.037 0.00 0.00 0.00 2.24
3640 10136 9.988350 CTAGTCGTTCGGTTAGTTAATTTAGTA 57.012 33.333 0.00 0.00 0.00 1.82
3641 10137 8.902040 AGTCGTTCGGTTAGTTAATTTAGTAG 57.098 34.615 0.00 0.00 0.00 2.57
3643 10140 9.769093 GTCGTTCGGTTAGTTAATTTAGTAGTA 57.231 33.333 0.00 0.00 0.00 1.82
3669 10166 5.529791 ACACTAACGTGGATAGTCATATGC 58.470 41.667 0.00 0.00 45.50 3.14
3674 10171 2.354103 CGTGGATAGTCATATGCAGGGG 60.354 54.545 0.00 0.00 40.02 4.79
3715 10212 1.076332 AAGCATTTGTCGCCTACGTC 58.924 50.000 0.00 0.00 41.18 4.34
3733 10230 2.537401 GTCAACGTGGGATGCTACTAC 58.463 52.381 0.00 0.00 0.00 2.73
3758 10255 4.966787 GCGTCCCCTTGGGTTGCA 62.967 66.667 4.84 0.00 44.74 4.08
3775 10272 3.439857 TGCATCCTTGGCTTCTACTTT 57.560 42.857 0.00 0.00 0.00 2.66
3788 10285 2.537792 CTACTTTGACCTCGGCGCGA 62.538 60.000 12.10 0.94 0.00 5.87
3801 10298 4.867599 CGCGACGGTAAGGCCTCC 62.868 72.222 5.23 2.15 34.25 4.30
3823 10320 2.901249 TCCGTGCAAGGCTCTTTATAC 58.099 47.619 14.54 0.00 0.00 1.47
3838 10335 4.467082 TCTTTATACCTTTACACCGCCTGA 59.533 41.667 0.00 0.00 0.00 3.86
3839 10336 5.129815 TCTTTATACCTTTACACCGCCTGAT 59.870 40.000 0.00 0.00 0.00 2.90
3841 10338 6.482898 TTATACCTTTACACCGCCTGATAA 57.517 37.500 0.00 0.00 0.00 1.75
3842 10339 3.926058 ACCTTTACACCGCCTGATAAT 57.074 42.857 0.00 0.00 0.00 1.28
3843 10340 4.230745 ACCTTTACACCGCCTGATAATT 57.769 40.909 0.00 0.00 0.00 1.40
3849 10346 1.948834 CACCGCCTGATAATTCATGCA 59.051 47.619 0.00 0.00 41.87 3.96
3925 10422 2.495270 AGGTACTCTGATGCAGACTGTG 59.505 50.000 3.99 0.00 35.39 3.66
3944 10441 3.105283 GTGATCCTAGTGTGGGTTACCT 58.895 50.000 0.00 0.00 37.76 3.08
3946 10443 4.019591 GTGATCCTAGTGTGGGTTACCTTT 60.020 45.833 0.00 0.00 37.76 3.11
3955 10452 4.276678 GTGTGGGTTACCTTTAGGACAAAC 59.723 45.833 0.00 4.25 38.94 2.93
3978 10475 3.118920 TGGGACAATGAGGTACGTACATG 60.119 47.826 26.02 17.26 31.92 3.21
3979 10476 3.118884 GGGACAATGAGGTACGTACATGT 60.119 47.826 26.02 19.86 0.00 3.21
3980 10477 3.863424 GGACAATGAGGTACGTACATGTG 59.137 47.826 26.02 17.84 0.00 3.21
3981 10478 4.491676 GACAATGAGGTACGTACATGTGT 58.508 43.478 26.02 20.52 0.00 3.72
3982 10479 5.393352 GGACAATGAGGTACGTACATGTGTA 60.393 44.000 26.02 6.83 0.00 2.90
3983 10480 5.404946 ACAATGAGGTACGTACATGTGTAC 58.595 41.667 26.02 12.79 45.47 2.90
3990 10487 4.863491 GTACGTACATGTGTACCTATGGG 58.137 47.826 20.67 0.00 46.01 4.00
3991 10488 3.634504 ACGTACATGTGTACCTATGGGA 58.365 45.455 9.11 0.00 46.01 4.37
3992 10489 4.025360 ACGTACATGTGTACCTATGGGAA 58.975 43.478 9.11 0.00 46.01 3.97
3993 10490 4.098960 ACGTACATGTGTACCTATGGGAAG 59.901 45.833 9.11 3.53 46.01 3.46
3994 10491 4.098960 CGTACATGTGTACCTATGGGAAGT 59.901 45.833 9.11 0.00 46.01 3.01
3995 10492 5.300034 CGTACATGTGTACCTATGGGAAGTA 59.700 44.000 9.11 0.00 46.01 2.24
4048 10610 8.322906 TGACAGAACAATAACATTAGGTTCAG 57.677 34.615 15.61 12.07 40.96 3.02
4058 10620 1.604604 TTAGGTTCAGCAAGGCACAC 58.395 50.000 0.00 0.00 0.00 3.82
4066 10628 1.949525 CAGCAAGGCACACAGTAGTTT 59.050 47.619 0.00 0.00 0.00 2.66
4067 10629 2.358898 CAGCAAGGCACACAGTAGTTTT 59.641 45.455 0.00 0.00 0.00 2.43
4068 10630 3.023832 AGCAAGGCACACAGTAGTTTTT 58.976 40.909 0.00 0.00 0.00 1.94
4069 10631 3.115554 GCAAGGCACACAGTAGTTTTTG 58.884 45.455 0.00 0.00 0.00 2.44
4070 10632 3.428862 GCAAGGCACACAGTAGTTTTTGT 60.429 43.478 0.00 0.00 0.00 2.83
4071 10633 4.743493 CAAGGCACACAGTAGTTTTTGTT 58.257 39.130 0.00 0.00 0.00 2.83
4072 10634 5.167845 CAAGGCACACAGTAGTTTTTGTTT 58.832 37.500 0.00 0.00 0.00 2.83
4073 10635 5.400066 AGGCACACAGTAGTTTTTGTTTT 57.600 34.783 0.00 0.00 0.00 2.43
4074 10636 5.167845 AGGCACACAGTAGTTTTTGTTTTG 58.832 37.500 0.00 0.00 0.00 2.44
4075 10637 5.047660 AGGCACACAGTAGTTTTTGTTTTGA 60.048 36.000 0.00 0.00 0.00 2.69
4076 10638 5.061684 GGCACACAGTAGTTTTTGTTTTGAC 59.938 40.000 0.00 0.00 0.00 3.18
4077 10639 5.219951 GCACACAGTAGTTTTTGTTTTGACG 60.220 40.000 0.00 0.00 0.00 4.35
4078 10640 5.285134 CACACAGTAGTTTTTGTTTTGACGG 59.715 40.000 0.00 0.00 0.00 4.79
4079 10641 5.181622 ACACAGTAGTTTTTGTTTTGACGGA 59.818 36.000 0.00 0.00 0.00 4.69
4080 10642 6.087522 CACAGTAGTTTTTGTTTTGACGGAA 58.912 36.000 0.00 0.00 0.00 4.30
4081 10643 6.583050 CACAGTAGTTTTTGTTTTGACGGAAA 59.417 34.615 0.00 0.00 0.00 3.13
4082 10644 6.804783 ACAGTAGTTTTTGTTTTGACGGAAAG 59.195 34.615 0.00 0.00 0.00 2.62
4083 10645 7.024768 CAGTAGTTTTTGTTTTGACGGAAAGA 58.975 34.615 0.00 0.00 0.00 2.52
4088 10650 4.974368 TTGTTTTGACGGAAAGACACAT 57.026 36.364 0.00 0.00 0.00 3.21
4096 10658 5.466819 TGACGGAAAGACACATAGTAGTTG 58.533 41.667 0.00 0.00 0.00 3.16
4099 10661 5.924825 ACGGAAAGACACATAGTAGTTGAAC 59.075 40.000 0.00 0.00 0.00 3.18
4101 10663 6.128902 CGGAAAGACACATAGTAGTTGAACAC 60.129 42.308 0.00 0.00 0.00 3.32
4103 10665 4.806330 AGACACATAGTAGTTGAACACCG 58.194 43.478 0.00 0.00 0.00 4.94
4110 10672 7.491372 CACATAGTAGTTGAACACCGTGATATT 59.509 37.037 5.28 0.00 0.00 1.28
4113 10675 6.640518 AGTAGTTGAACACCGTGATATTCAT 58.359 36.000 5.28 0.00 31.45 2.57
4180 10745 9.771534 ATATTAGGCAGTTAAAAGCAACAAAAA 57.228 25.926 3.20 0.00 0.00 1.94
4217 10782 3.932459 GCTCACATAGCCACATTGC 57.068 52.632 0.00 0.00 46.25 3.56
4233 10798 9.480053 AGCCACATTGCAATATAAATTATGTTC 57.520 29.630 12.53 0.00 0.00 3.18
4251 10816 6.560253 ATGTTCATATTATTTCTCACCCGC 57.440 37.500 0.00 0.00 0.00 6.13
4252 10817 4.509970 TGTTCATATTATTTCTCACCCGCG 59.490 41.667 0.00 0.00 0.00 6.46
4269 10835 3.617263 CCCGCGTTGGATTATAATCTAGC 59.383 47.826 21.80 17.52 42.00 3.42
4273 10839 5.405571 CGCGTTGGATTATAATCTAGCACTT 59.594 40.000 21.80 0.00 35.73 3.16
4293 10863 9.214962 AGCACTTTAGATATAGTTCCCTACTTT 57.785 33.333 0.00 0.00 38.33 2.66
4310 10880 8.047310 TCCCTACTTTTAAAAGCTATCTTCTGG 58.953 37.037 24.60 13.26 39.63 3.86
4329 10899 2.290832 TGGTCTGATTGCATTGCAGGTA 60.291 45.455 11.76 0.00 40.61 3.08
4390 10960 3.719173 AACCTCTATTAGCTGTCGAGC 57.281 47.619 0.00 0.00 46.64 5.03
4407 10977 3.882888 TCGAGCAGTGAAACAAGGATTTT 59.117 39.130 0.00 0.00 41.43 1.82
4408 10978 4.024048 TCGAGCAGTGAAACAAGGATTTTC 60.024 41.667 0.00 0.00 41.43 2.29
4412 10982 7.472334 AGCAGTGAAACAAGGATTTTCATAT 57.528 32.000 0.00 0.00 43.16 1.78
4451 11025 3.644966 AGCGGGATTTCAAGGTAATCA 57.355 42.857 0.00 0.00 34.43 2.57
4454 11028 4.956075 AGCGGGATTTCAAGGTAATCAAAT 59.044 37.500 0.00 0.00 34.43 2.32
4505 11079 6.709281 TGGTTGTCCAAAAACGTATCCTATA 58.291 36.000 0.00 0.00 41.25 1.31
4515 11089 2.555757 ACGTATCCTATAGTGGGCGTTC 59.444 50.000 0.00 0.00 31.03 3.95
4516 11090 2.555325 CGTATCCTATAGTGGGCGTTCA 59.445 50.000 0.00 0.00 0.00 3.18
4522 11136 1.597742 ATAGTGGGCGTTCATGATGC 58.402 50.000 11.04 11.04 39.65 3.91
4531 11145 2.094675 CGTTCATGATGCCCCTTTTCT 58.905 47.619 0.00 0.00 0.00 2.52
4532 11146 2.159338 CGTTCATGATGCCCCTTTTCTG 60.159 50.000 0.00 0.00 0.00 3.02
4537 11151 1.925255 TGATGCCCCTTTTCTGATCCT 59.075 47.619 0.00 0.00 0.00 3.24
4560 11174 4.264352 TGAAAGGGCTTTGGAAGTGGATAT 60.264 41.667 0.00 0.00 32.11 1.63
4561 11175 3.584733 AGGGCTTTGGAAGTGGATATC 57.415 47.619 0.00 0.00 0.00 1.63
4570 11184 9.521503 GCTTTGGAAGTGGATATCTTTTTATTC 57.478 33.333 2.05 0.06 0.00 1.75
4589 11203 1.806542 TCATCTCGCTTCTTTTGGCAC 59.193 47.619 0.00 0.00 0.00 5.01
4593 11207 1.603802 CTCGCTTCTTTTGGCACTTCA 59.396 47.619 0.00 0.00 0.00 3.02
4610 11224 9.081204 TGGCACTTCAGCATAAATGAATATATT 57.919 29.630 0.00 0.00 36.16 1.28
4639 11253 5.551760 CACAATGGGAGATTTGTGTACTC 57.448 43.478 7.45 0.00 44.79 2.59
4640 11254 4.396166 CACAATGGGAGATTTGTGTACTCC 59.604 45.833 0.00 0.00 44.79 3.85
4641 11255 4.289672 ACAATGGGAGATTTGTGTACTCCT 59.710 41.667 0.00 0.00 46.39 3.69
4643 11257 5.878406 ATGGGAGATTTGTGTACTCCTAG 57.122 43.478 0.00 0.00 46.39 3.02
4644 11258 4.030913 TGGGAGATTTGTGTACTCCTAGG 58.969 47.826 0.82 0.82 46.39 3.02
4645 11259 3.388350 GGGAGATTTGTGTACTCCTAGGG 59.612 52.174 9.46 2.03 46.39 3.53
4646 11260 3.388350 GGAGATTTGTGTACTCCTAGGGG 59.612 52.174 7.26 7.26 44.54 4.79
4655 11269 2.773918 TCCTAGGGGCCATGGCAG 60.774 66.667 36.56 24.60 44.11 4.85
4669 11283 1.152881 GGCAGCCTCGGGATTCAAT 60.153 57.895 3.29 0.00 0.00 2.57
4673 11287 2.887152 GCAGCCTCGGGATTCAATAATT 59.113 45.455 0.00 0.00 0.00 1.40
4674 11288 3.304928 GCAGCCTCGGGATTCAATAATTG 60.305 47.826 0.00 0.00 0.00 2.32
4683 11297 7.570132 TCGGGATTCAATAATTGGAAGTAGAA 58.430 34.615 0.00 0.00 0.00 2.10
4708 11322 9.449719 AAAATAAGTGGACTATTGAGTAAGTGG 57.550 33.333 0.00 0.00 35.45 4.00
4714 11328 7.444487 AGTGGACTATTGAGTAAGTGGTTTTTC 59.556 37.037 0.00 0.00 35.45 2.29
4717 11331 8.626526 GGACTATTGAGTAAGTGGTTTTTCAAA 58.373 33.333 0.00 0.00 35.45 2.69
4731 11345 7.855409 GTGGTTTTTCAAATTGTTAATCAAGGC 59.145 33.333 0.00 0.00 39.55 4.35
4732 11346 7.554118 TGGTTTTTCAAATTGTTAATCAAGGCA 59.446 29.630 0.00 0.00 39.55 4.75
4734 11348 7.727331 TTTTCAAATTGTTAATCAAGGCAGG 57.273 32.000 0.00 0.00 39.55 4.85
4735 11349 6.418057 TTCAAATTGTTAATCAAGGCAGGT 57.582 33.333 0.00 0.00 39.55 4.00
4736 11350 5.782047 TCAAATTGTTAATCAAGGCAGGTG 58.218 37.500 0.00 0.00 39.55 4.00
4739 11353 5.806654 ATTGTTAATCAAGGCAGGTGTTT 57.193 34.783 0.00 0.00 39.55 2.83
4741 11355 3.320541 TGTTAATCAAGGCAGGTGTTTGG 59.679 43.478 0.00 0.00 0.00 3.28
4746 11361 1.880027 CAAGGCAGGTGTTTGGTAGTC 59.120 52.381 0.00 0.00 0.00 2.59
4754 11369 2.480845 GTGTTTGGTAGTCGCTCTTGT 58.519 47.619 0.00 0.00 0.00 3.16
4761 11376 4.385825 TGGTAGTCGCTCTTGTGAAAAAT 58.614 39.130 0.00 0.00 34.18 1.82
4763 11378 5.992829 TGGTAGTCGCTCTTGTGAAAAATTA 59.007 36.000 0.00 0.00 34.18 1.40
4770 11385 5.348451 CGCTCTTGTGAAAAATTATTTGGGG 59.652 40.000 0.00 0.00 0.00 4.96
4771 11386 6.230472 GCTCTTGTGAAAAATTATTTGGGGT 58.770 36.000 0.00 0.00 0.00 4.95
4772 11387 6.368791 GCTCTTGTGAAAAATTATTTGGGGTC 59.631 38.462 0.00 0.00 0.00 4.46
4773 11388 7.366847 TCTTGTGAAAAATTATTTGGGGTCA 57.633 32.000 0.00 0.00 0.00 4.02
4828 11443 3.327172 TGGACATACGTTTTGGAAGGGTA 59.673 43.478 0.00 0.00 0.00 3.69
4830 11445 4.573607 GGACATACGTTTTGGAAGGGTATC 59.426 45.833 0.00 0.00 0.00 2.24
4831 11446 5.168647 ACATACGTTTTGGAAGGGTATCA 57.831 39.130 0.00 0.00 0.00 2.15
4836 11451 3.627577 CGTTTTGGAAGGGTATCATGAGG 59.372 47.826 0.09 0.00 0.00 3.86
4843 11458 4.202472 GGAAGGGTATCATGAGGGTTAAGG 60.202 50.000 0.09 0.00 0.00 2.69
4845 11460 3.974642 AGGGTATCATGAGGGTTAAGGAC 59.025 47.826 0.09 0.00 0.00 3.85
4846 11461 3.714798 GGGTATCATGAGGGTTAAGGACA 59.285 47.826 0.09 0.00 0.00 4.02
4856 11471 5.073144 TGAGGGTTAAGGACACATTCTTTCT 59.927 40.000 0.00 0.00 32.57 2.52
4861 11476 9.457436 GGGTTAAGGACACATTCTTTCTATTTA 57.543 33.333 0.00 0.00 0.00 1.40
4923 11539 2.532250 AGGACAAATGGATTGGGGAC 57.468 50.000 0.00 0.00 43.66 4.46
4924 11540 1.715931 AGGACAAATGGATTGGGGACA 59.284 47.619 0.00 0.00 43.66 4.02
4926 11542 2.695147 GGACAAATGGATTGGGGACATC 59.305 50.000 0.00 0.00 43.66 3.06
4933 11549 1.570979 GGATTGGGGACATCCTCCTTT 59.429 52.381 0.00 0.00 42.32 3.11
4942 11558 3.712218 GGACATCCTCCTTTTAGCTAGGT 59.288 47.826 0.00 0.00 35.89 3.08
4944 11560 3.456277 ACATCCTCCTTTTAGCTAGGTGG 59.544 47.826 13.80 13.80 44.29 4.61
4949 11567 6.151049 TCCTCCTTTTAGCTAGGTGGATTAT 58.849 40.000 17.31 0.00 45.72 1.28
4951 11569 7.128883 TCCTCCTTTTAGCTAGGTGGATTATTT 59.871 37.037 17.31 0.00 45.72 1.40
4952 11570 8.437575 CCTCCTTTTAGCTAGGTGGATTATTTA 58.562 37.037 14.56 0.00 45.26 1.40
4953 11571 9.847224 CTCCTTTTAGCTAGGTGGATTATTTAA 57.153 33.333 4.27 0.00 34.29 1.52
4994 11612 5.181690 TGCCACTGTAATTGTTGTTCTTC 57.818 39.130 0.00 0.00 0.00 2.87
5036 11661 3.296322 TTTTTGGGCTGTCATTTAGCG 57.704 42.857 0.00 0.00 42.03 4.26
5061 11686 6.537566 GCATTTAGCGGAGTACAATGATATG 58.462 40.000 0.00 0.00 0.00 1.78
5066 11691 3.006967 GCGGAGTACAATGATATGGTCCT 59.993 47.826 0.00 0.00 0.00 3.85
5075 11700 1.770658 TGATATGGTCCTCAAGGCTGG 59.229 52.381 0.00 0.00 34.44 4.85
5080 11705 1.301293 GTCCTCAAGGCTGGGAAGG 59.699 63.158 5.83 0.00 34.44 3.46
5095 11720 3.244770 TGGGAAGGTGCAACTAACTTAGG 60.245 47.826 3.69 0.00 36.74 2.69
5118 11743 3.055094 AGCACGAGTCATTTAAGTGGGAT 60.055 43.478 0.00 0.00 33.80 3.85
5127 11752 8.095452 AGTCATTTAAGTGGGATCTTCATACT 57.905 34.615 0.00 0.00 0.00 2.12
5128 11753 9.213777 AGTCATTTAAGTGGGATCTTCATACTA 57.786 33.333 0.00 0.00 0.00 1.82
5129 11754 9.262358 GTCATTTAAGTGGGATCTTCATACTAC 57.738 37.037 0.00 0.00 0.00 2.73
5136 11761 3.579151 GGGATCTTCATACTACTGGGGTC 59.421 52.174 0.00 0.00 0.00 4.46
5137 11762 3.256136 GGATCTTCATACTACTGGGGTCG 59.744 52.174 0.00 0.00 0.00 4.79
5141 11766 3.377253 TCATACTACTGGGGTCGTTCT 57.623 47.619 0.00 0.00 0.00 3.01
5161 11786 8.308931 TCGTTCTTGTATACTCCATGTACTTTT 58.691 33.333 4.17 0.00 33.45 2.27
5165 11790 9.871238 TCTTGTATACTCCATGTACTTTTCTTC 57.129 33.333 4.17 0.00 33.45 2.87
5208 11834 7.880195 AGATTAAATCTAAGTGATTATGGCGCT 59.120 33.333 7.64 0.00 43.99 5.92
5214 11840 7.011828 TCTAAGTGATTATGGCGCTTTAAAC 57.988 36.000 7.64 5.36 37.31 2.01
5225 11851 5.726397 TGGCGCTTTAAACTACATCTAAGA 58.274 37.500 7.64 0.00 0.00 2.10
5228 11854 7.011109 TGGCGCTTTAAACTACATCTAAGAATC 59.989 37.037 7.64 0.00 0.00 2.52
5229 11855 7.058005 GCGCTTTAAACTACATCTAAGAATCG 58.942 38.462 0.00 0.00 0.00 3.34
5231 11857 8.804743 CGCTTTAAACTACATCTAAGAATCGAA 58.195 33.333 0.00 0.00 0.00 3.71
5236 11862 8.690680 AAACTACATCTAAGAATCGAAGTGTC 57.309 34.615 0.00 0.00 0.00 3.67
5237 11863 7.633193 ACTACATCTAAGAATCGAAGTGTCT 57.367 36.000 0.00 0.00 0.00 3.41
5238 11864 8.057536 ACTACATCTAAGAATCGAAGTGTCTT 57.942 34.615 0.00 0.00 36.21 3.01
5241 11867 8.245701 ACATCTAAGAATCGAAGTGTCTTTTC 57.754 34.615 8.67 0.00 34.62 2.29
5242 11868 8.091449 ACATCTAAGAATCGAAGTGTCTTTTCT 58.909 33.333 8.67 0.00 34.62 2.52
5243 11869 8.930760 CATCTAAGAATCGAAGTGTCTTTTCTT 58.069 33.333 10.29 10.29 36.92 2.52
5245 11871 9.408069 TCTAAGAATCGAAGTGTCTTTTCTTAC 57.592 33.333 8.71 0.00 35.71 2.34
5246 11872 9.413048 CTAAGAATCGAAGTGTCTTTTCTTACT 57.587 33.333 8.71 0.00 35.71 2.24
5248 11874 9.760077 AAGAATCGAAGTGTCTTTTCTTACTAA 57.240 29.630 4.93 0.00 33.94 2.24
5249 11875 9.760077 AGAATCGAAGTGTCTTTTCTTACTAAA 57.240 29.630 0.00 0.00 0.00 1.85
5277 11903 7.272037 AACTACTTGTTTAAATGGGACACAG 57.728 36.000 0.00 0.00 36.87 3.66
5310 11936 8.169268 GCTTATGTTACGCATATGAAACTATCC 58.831 37.037 6.97 0.00 39.56 2.59
5311 11937 9.203421 CTTATGTTACGCATATGAAACTATCCA 57.797 33.333 6.97 0.00 39.56 3.41
5312 11938 9.549078 TTATGTTACGCATATGAAACTATCCAA 57.451 29.630 6.97 0.00 39.56 3.53
5315 11941 7.497579 TGTTACGCATATGAAACTATCCAACAT 59.502 33.333 6.97 0.00 0.00 2.71
5317 11943 6.291377 ACGCATATGAAACTATCCAACATCT 58.709 36.000 6.97 0.00 0.00 2.90
5318 11944 6.425114 ACGCATATGAAACTATCCAACATCTC 59.575 38.462 6.97 0.00 0.00 2.75
5333 11962 7.235079 TCCAACATCTCCTTTATTGTGGTTTA 58.765 34.615 0.00 0.00 0.00 2.01
5352 11981 5.007234 GGTTTAGCACGTATTGTATCATGCA 59.993 40.000 0.00 0.00 35.51 3.96
5357 11986 5.757808 AGCACGTATTGTATCATGCATTGTA 59.242 36.000 0.00 0.00 35.51 2.41
5366 11997 5.473162 TGTATCATGCATTGTATACTTGGCC 59.527 40.000 17.86 0.00 0.00 5.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
375 376 4.719773 TCTAGCTAGTCATTTTAGGGCCAA 59.280 41.667 20.10 0.00 0.00 4.52
376 377 4.295201 TCTAGCTAGTCATTTTAGGGCCA 58.705 43.478 20.10 0.00 0.00 5.36
408 409 9.104965 TGGTTCTTTTATTACTCATATTGGACG 57.895 33.333 0.00 0.00 0.00 4.79
416 417 6.647895 ACGAACGTGGTTCTTTTATTACTCAT 59.352 34.615 6.89 0.00 40.05 2.90
425 426 4.311816 TCTAGACGAACGTGGTTCTTTT 57.688 40.909 4.19 0.00 40.05 2.27
426 427 3.996150 TCTAGACGAACGTGGTTCTTT 57.004 42.857 4.19 0.00 40.05 2.52
451 452 8.324163 TGCTTTTCTAGTTAAAGAGATCAACC 57.676 34.615 18.14 4.77 35.16 3.77
481 485 6.705825 GCAGATTGGTGAAACAAATAGGTTTT 59.294 34.615 0.00 0.00 41.57 2.43
486 490 6.623486 TGATGCAGATTGGTGAAACAAATAG 58.377 36.000 0.00 0.00 41.57 1.73
547 551 5.645497 AGGTACACTAAGGTCAGTAGTAACG 59.355 44.000 0.00 0.00 31.08 3.18
623 627 0.033504 ACGTTTCTGTCGAGCATGGT 59.966 50.000 0.00 0.00 0.00 3.55
718 722 2.676163 GAACGTGCCAAGGGTCTGGT 62.676 60.000 0.00 0.00 38.86 4.00
770 774 0.872388 ACAAAAAGGATCGCCACGAC 59.128 50.000 0.00 0.00 39.18 4.34
789 793 0.178767 AGCCGCAGCATCACAGATAA 59.821 50.000 0.00 0.00 43.56 1.75
791 795 1.818363 CAGCCGCAGCATCACAGAT 60.818 57.895 0.00 0.00 43.56 2.90
851 861 3.374402 AGCCACCGGAGAGTGTCG 61.374 66.667 9.46 0.00 35.93 4.35
852 862 2.262915 CAGCCACCGGAGAGTGTC 59.737 66.667 9.46 0.00 35.93 3.67
853 863 4.008933 GCAGCCACCGGAGAGTGT 62.009 66.667 9.46 0.00 35.93 3.55
856 866 4.379243 AACGCAGCCACCGGAGAG 62.379 66.667 9.46 0.00 0.00 3.20
857 867 4.373116 GAACGCAGCCACCGGAGA 62.373 66.667 9.46 0.00 0.00 3.71
870 880 1.944676 GGGTATGAGCGAGCGAACG 60.945 63.158 0.00 0.00 0.00 3.95
871 881 1.944676 CGGGTATGAGCGAGCGAAC 60.945 63.158 0.00 0.00 0.00 3.95
873 883 2.827190 ACGGGTATGAGCGAGCGA 60.827 61.111 0.00 0.00 0.00 4.93
875 885 1.589196 GACACGGGTATGAGCGAGC 60.589 63.158 0.00 0.00 0.00 5.03
877 887 0.454600 GAAGACACGGGTATGAGCGA 59.545 55.000 0.00 0.00 0.00 4.93
878 888 0.866061 CGAAGACACGGGTATGAGCG 60.866 60.000 0.00 0.00 0.00 5.03
879 889 0.172803 ACGAAGACACGGGTATGAGC 59.827 55.000 0.00 0.00 37.61 4.26
880 890 1.743958 AGACGAAGACACGGGTATGAG 59.256 52.381 0.00 0.00 37.61 2.90
881 891 1.830279 AGACGAAGACACGGGTATGA 58.170 50.000 0.00 0.00 37.61 2.15
882 892 2.223433 GGTAGACGAAGACACGGGTATG 60.223 54.545 0.00 0.00 37.61 2.39
883 893 2.019984 GGTAGACGAAGACACGGGTAT 58.980 52.381 0.00 0.00 37.61 2.73
884 894 1.003580 AGGTAGACGAAGACACGGGTA 59.996 52.381 0.00 0.00 37.61 3.69
885 895 0.251077 AGGTAGACGAAGACACGGGT 60.251 55.000 0.00 0.00 37.61 5.28
932 960 2.709629 GATCCACTCTCTCTCGCGCG 62.710 65.000 26.76 26.76 0.00 6.86
934 962 0.028770 GTGATCCACTCTCTCTCGCG 59.971 60.000 0.00 0.00 0.00 5.87
936 964 1.065401 GCTGTGATCCACTCTCTCTCG 59.935 57.143 0.00 0.00 35.11 4.04
961 996 1.228894 AACTGCGGAGGTGGAGAGA 60.229 57.895 9.36 0.00 0.00 3.10
992 1029 1.227645 GCAGCGTCCATGGATAGCA 60.228 57.895 32.74 6.93 34.65 3.49
994 1031 1.665916 CCGCAGCGTCCATGGATAG 60.666 63.158 19.62 16.21 0.00 2.08
995 1032 2.087462 CTCCGCAGCGTCCATGGATA 62.087 60.000 19.62 0.00 0.00 2.59
996 1033 3.451556 CTCCGCAGCGTCCATGGAT 62.452 63.158 19.62 0.00 0.00 3.41
997 1034 4.147449 CTCCGCAGCGTCCATGGA 62.147 66.667 11.44 11.44 0.00 3.41
1023 1063 2.270205 GGGCTCTGCAGCTTGCTA 59.730 61.111 9.47 0.00 46.03 3.49
1389 2628 1.134965 ACTGAGCACCGACATTAGAGC 60.135 52.381 0.00 0.00 0.00 4.09
1431 2670 3.428999 CCCGATCATGAAGTAACACTCGT 60.429 47.826 0.00 0.00 0.00 4.18
1534 3158 2.505498 GACACGCGTACATGGCTCG 61.505 63.158 13.44 0.00 0.00 5.03
1541 3165 1.337354 ACATGGATTGACACGCGTACA 60.337 47.619 13.44 13.14 0.00 2.90
1606 3644 6.156748 ACGTGGACATGCTACAAATATAGA 57.843 37.500 0.00 0.00 0.00 1.98
1824 4175 1.967066 TGTGCAAAACCAACATAGGGG 59.033 47.619 0.00 0.00 0.00 4.79
1932 5308 7.072263 AGATAAATAGAAGTGGTGGGATCAG 57.928 40.000 0.00 0.00 0.00 2.90
1963 5762 6.283694 GTGTGTGATGAGGTGACATGTATAT 58.716 40.000 0.00 0.00 0.00 0.86
1964 5763 5.395214 GGTGTGTGATGAGGTGACATGTATA 60.395 44.000 0.00 0.00 0.00 1.47
1986 5785 5.171339 AGCAGTAAAGTTGATGAGATGGT 57.829 39.130 0.00 0.00 0.00 3.55
1987 5786 6.506500 AAAGCAGTAAAGTTGATGAGATGG 57.493 37.500 0.00 0.00 0.00 3.51
2035 5836 7.884816 TTAGTATAGATAGCGTTTTCCATGC 57.115 36.000 0.00 0.00 37.74 4.06
2044 5845 9.811995 TGTTGACAAAATTAGTATAGATAGCGT 57.188 29.630 0.00 0.00 0.00 5.07
2054 5855 7.032377 TGTGTGCATGTTGACAAAATTAGTA 57.968 32.000 0.00 0.00 0.00 1.82
2062 5863 2.286891 CGTGATGTGTGCATGTTGACAA 60.287 45.455 0.00 0.00 35.07 3.18
2085 5886 6.211184 ACATGTTGGCATATATATTGGGGTTG 59.789 38.462 0.00 0.00 33.30 3.77
2088 5889 9.639563 TTATACATGTTGGCATATATATTGGGG 57.360 33.333 2.30 0.00 29.98 4.96
2174 6000 2.667318 CGTGTTGCGGCGAGAACAT 61.667 57.895 22.29 0.00 34.69 2.71
2191 6017 2.332063 AAACTAGATGATGCCCCACG 57.668 50.000 0.00 0.00 0.00 4.94
2205 6031 4.322499 GGTGTGGCTGCTCTAGTAAAACTA 60.322 45.833 0.00 0.00 0.00 2.24
2206 6032 3.557264 GGTGTGGCTGCTCTAGTAAAACT 60.557 47.826 0.00 0.00 0.00 2.66
2207 6033 2.742589 GGTGTGGCTGCTCTAGTAAAAC 59.257 50.000 0.00 0.00 0.00 2.43
2208 6034 2.370519 TGGTGTGGCTGCTCTAGTAAAA 59.629 45.455 0.00 0.00 0.00 1.52
2209 6035 1.974957 TGGTGTGGCTGCTCTAGTAAA 59.025 47.619 0.00 0.00 0.00 2.01
2210 6036 1.550524 CTGGTGTGGCTGCTCTAGTAA 59.449 52.381 0.00 0.00 0.00 2.24
2211 6037 1.186200 CTGGTGTGGCTGCTCTAGTA 58.814 55.000 0.00 0.00 0.00 1.82
2212 6038 1.548357 CCTGGTGTGGCTGCTCTAGT 61.548 60.000 0.00 0.00 0.00 2.57
2213 6039 1.220206 CCTGGTGTGGCTGCTCTAG 59.780 63.158 0.00 0.00 0.00 2.43
2214 6040 3.392228 CCTGGTGTGGCTGCTCTA 58.608 61.111 0.00 0.00 0.00 2.43
2228 6054 6.183359 CGTAAAAGAAATCAAAACGATGCCTG 60.183 38.462 0.00 0.00 33.40 4.85
2242 6068 7.383102 AGCAGAATGATGTCGTAAAAGAAAT 57.617 32.000 0.00 0.00 39.69 2.17
2252 6078 6.920210 TGATTAGAACTAGCAGAATGATGTCG 59.080 38.462 0.00 0.00 39.69 4.35
2639 9102 2.107141 GCGGAGATGTAGGCGCTT 59.893 61.111 7.64 0.52 0.00 4.68
2708 9171 1.619669 ACCCAAGATCCCCAGACCC 60.620 63.158 0.00 0.00 0.00 4.46
2733 9196 0.250209 CAGCTGGCGCTAAGGATGAT 60.250 55.000 7.64 0.00 46.99 2.45
2867 9330 1.153086 GACGGCAGAGGCAATGGAT 60.153 57.895 0.00 0.00 43.71 3.41
3021 9484 8.642432 TGAGCTATACATACCCATAATCATAGC 58.358 37.037 0.00 0.00 39.77 2.97
3043 9523 8.502387 CAAGGACATTAGATTTATAAGCTGAGC 58.498 37.037 0.00 0.00 0.00 4.26
3060 9542 2.481795 GCTGCAAACACACAAGGACATT 60.482 45.455 0.00 0.00 0.00 2.71
3065 9555 1.067364 TCATGCTGCAAACACACAAGG 59.933 47.619 6.36 0.00 0.00 3.61
3114 9606 1.973138 CTGCTGCGTTGAATCCAAAG 58.027 50.000 0.00 0.00 33.49 2.77
3161 9653 6.893005 TCAGTAACTTTTTCCCTCAAAAGGAA 59.107 34.615 9.97 0.00 46.67 3.36
3162 9654 6.428295 TCAGTAACTTTTTCCCTCAAAAGGA 58.572 36.000 9.97 0.00 46.67 3.36
3163 9655 6.239036 CCTCAGTAACTTTTTCCCTCAAAAGG 60.239 42.308 9.97 0.00 44.77 3.11
3164 9656 6.546034 TCCTCAGTAACTTTTTCCCTCAAAAG 59.454 38.462 4.70 4.70 45.59 2.27
3169 9661 6.477253 AGAATCCTCAGTAACTTTTTCCCTC 58.523 40.000 0.00 0.00 0.00 4.30
3196 9692 9.492973 ACTGTTCAATGAAATTTCCTTTAATGG 57.507 29.630 15.48 0.83 31.22 3.16
3214 9710 9.679661 TTTTATCAGCTCCATATAACTGTTCAA 57.320 29.630 0.00 0.00 0.00 2.69
3216 9712 8.560374 GGTTTTATCAGCTCCATATAACTGTTC 58.440 37.037 0.00 0.00 0.00 3.18
3219 9715 6.431234 GGGGTTTTATCAGCTCCATATAACTG 59.569 42.308 11.91 0.00 0.00 3.16
3220 9716 6.102615 TGGGGTTTTATCAGCTCCATATAACT 59.897 38.462 11.91 0.00 0.00 2.24
3228 9724 2.369394 CAGTGGGGTTTTATCAGCTCC 58.631 52.381 0.00 0.00 0.00 4.70
3243 9739 0.947244 GCTGAATATTCGCCCAGTGG 59.053 55.000 16.50 0.63 0.00 4.00
3249 9745 5.923684 GCTATATAGAGGCTGAATATTCGCC 59.076 44.000 28.75 28.75 42.82 5.54
3250 9746 6.507900 TGCTATATAGAGGCTGAATATTCGC 58.492 40.000 14.16 18.13 0.00 4.70
3251 9747 8.355913 TCATGCTATATAGAGGCTGAATATTCG 58.644 37.037 14.16 6.90 0.00 3.34
3257 9753 5.188359 TGCATCATGCTATATAGAGGCTGAA 59.812 40.000 11.84 0.00 45.31 3.02
3260 9756 4.468868 TGTGCATCATGCTATATAGAGGCT 59.531 41.667 11.84 0.00 45.31 4.58
3266 9762 5.619220 TGGTTGTGTGCATCATGCTATATA 58.381 37.500 11.84 0.00 45.31 0.86
3268 9764 3.883669 TGGTTGTGTGCATCATGCTATA 58.116 40.909 11.84 0.00 45.31 1.31
3272 9768 2.373540 ATTGGTTGTGTGCATCATGC 57.626 45.000 1.35 1.35 45.29 4.06
3282 9778 2.364970 TCCTCTTGCCAAATTGGTTGTG 59.635 45.455 14.17 5.28 40.46 3.33
3283 9779 2.676748 TCCTCTTGCCAAATTGGTTGT 58.323 42.857 14.17 0.00 40.46 3.32
3286 9782 4.837860 TGTTAATCCTCTTGCCAAATTGGT 59.162 37.500 14.17 0.00 40.46 3.67
3312 9808 9.466497 ACACACTGAAACATTATATTTCTCCAT 57.534 29.630 0.00 0.00 37.05 3.41
3350 9846 1.292223 GCTGACCCTCACGCTGTAA 59.708 57.895 0.00 0.00 0.00 2.41
3530 10026 1.376424 CAGCGGTGTCAGCTTGGAT 60.376 57.895 6.41 0.00 44.06 3.41
3551 10047 1.186200 TGAGGATGACAGTTAGCGCT 58.814 50.000 17.26 17.26 0.00 5.92
3560 10056 0.107703 GGATGCCGTTGAGGATGACA 60.108 55.000 0.00 0.00 45.00 3.58
3597 10093 5.469084 ACGACTAGGGAAATGTTTTCTGTTC 59.531 40.000 0.00 0.00 0.00 3.18
3609 10105 3.157087 ACTAACCGAACGACTAGGGAAA 58.843 45.455 0.00 0.00 0.00 3.13
3612 10108 4.701956 TTAACTAACCGAACGACTAGGG 57.298 45.455 0.00 0.00 0.00 3.53
3613 10109 7.970614 ACTAAATTAACTAACCGAACGACTAGG 59.029 37.037 0.00 0.00 0.00 3.02
3614 10110 8.902040 ACTAAATTAACTAACCGAACGACTAG 57.098 34.615 0.00 0.00 0.00 2.57
3615 10111 9.988350 CTACTAAATTAACTAACCGAACGACTA 57.012 33.333 0.00 0.00 0.00 2.59
3617 10113 8.675040 ACTACTAAATTAACTAACCGAACGAC 57.325 34.615 0.00 0.00 0.00 4.34
3637 10133 8.970859 ACTATCCACGTTAGTGTTATACTACT 57.029 34.615 0.00 0.00 46.56 2.57
3639 10135 8.962884 TGACTATCCACGTTAGTGTTATACTA 57.037 34.615 3.18 0.00 46.56 1.82
3640 10136 7.870509 TGACTATCCACGTTAGTGTTATACT 57.129 36.000 3.18 0.00 46.56 2.12
3643 10140 7.813148 GCATATGACTATCCACGTTAGTGTTAT 59.187 37.037 6.97 0.00 46.56 1.89
3645 10142 5.983720 GCATATGACTATCCACGTTAGTGTT 59.016 40.000 6.97 0.00 46.56 3.32
3651 10148 3.244215 CCCTGCATATGACTATCCACGTT 60.244 47.826 6.97 0.00 0.00 3.99
3660 10157 1.533711 GCCACCCCTGCATATGACT 59.466 57.895 6.97 0.00 0.00 3.41
3661 10158 1.529244 GGCCACCCCTGCATATGAC 60.529 63.158 6.97 0.00 0.00 3.06
3715 10212 1.135199 ACGTAGTAGCATCCCACGTTG 60.135 52.381 0.00 0.00 42.69 4.10
3758 10255 3.589288 AGGTCAAAGTAGAAGCCAAGGAT 59.411 43.478 0.00 0.00 0.00 3.24
3788 10285 2.432300 CGGATGGAGGCCTTACCGT 61.432 63.158 23.14 16.17 46.52 4.83
3801 10298 1.737838 TAAAGAGCCTTGCACGGATG 58.262 50.000 14.50 0.00 0.00 3.51
3823 10320 4.196193 TGAATTATCAGGCGGTGTAAAGG 58.804 43.478 0.00 0.00 0.00 3.11
3892 10389 3.889538 TCAGAGTACCTCCAATCATACCG 59.110 47.826 0.00 0.00 0.00 4.02
3913 10410 3.131933 ACACTAGGATCACAGTCTGCATC 59.868 47.826 0.00 1.91 0.00 3.91
3922 10419 2.835764 GGTAACCCACACTAGGATCACA 59.164 50.000 0.00 0.00 0.00 3.58
3925 10422 4.838904 AAAGGTAACCCACACTAGGATC 57.161 45.455 0.00 0.00 37.17 3.36
3944 10441 5.055265 TCATTGTCCCAGTTTGTCCTAAA 57.945 39.130 0.00 0.00 0.00 1.85
3946 10443 3.009033 CCTCATTGTCCCAGTTTGTCCTA 59.991 47.826 0.00 0.00 0.00 2.94
3955 10452 2.494471 TGTACGTACCTCATTGTCCCAG 59.506 50.000 22.43 0.00 0.00 4.45
4037 10599 2.095059 GTGTGCCTTGCTGAACCTAATG 60.095 50.000 0.00 0.00 0.00 1.90
4048 10610 3.115554 CAAAAACTACTGTGTGCCTTGC 58.884 45.455 0.00 0.00 0.00 4.01
4058 10620 7.007995 GTCTTTCCGTCAAAACAAAAACTACTG 59.992 37.037 0.00 0.00 0.00 2.74
4066 10628 4.768130 TGTGTCTTTCCGTCAAAACAAA 57.232 36.364 0.00 0.00 0.00 2.83
4067 10629 4.974368 ATGTGTCTTTCCGTCAAAACAA 57.026 36.364 0.00 0.00 0.00 2.83
4068 10630 5.120399 ACTATGTGTCTTTCCGTCAAAACA 58.880 37.500 0.00 0.00 0.00 2.83
4069 10631 5.668558 ACTATGTGTCTTTCCGTCAAAAC 57.331 39.130 0.00 0.00 0.00 2.43
4070 10632 6.518493 ACTACTATGTGTCTTTCCGTCAAAA 58.482 36.000 0.00 0.00 0.00 2.44
4071 10633 6.092955 ACTACTATGTGTCTTTCCGTCAAA 57.907 37.500 0.00 0.00 0.00 2.69
4072 10634 5.717078 ACTACTATGTGTCTTTCCGTCAA 57.283 39.130 0.00 0.00 0.00 3.18
4073 10635 5.242171 TCAACTACTATGTGTCTTTCCGTCA 59.758 40.000 0.00 0.00 0.00 4.35
4074 10636 5.706916 TCAACTACTATGTGTCTTTCCGTC 58.293 41.667 0.00 0.00 0.00 4.79
4075 10637 5.717078 TCAACTACTATGTGTCTTTCCGT 57.283 39.130 0.00 0.00 0.00 4.69
4076 10638 5.924254 TGTTCAACTACTATGTGTCTTTCCG 59.076 40.000 0.00 0.00 0.00 4.30
4077 10639 6.147328 GGTGTTCAACTACTATGTGTCTTTCC 59.853 42.308 0.00 0.00 0.00 3.13
4078 10640 6.128902 CGGTGTTCAACTACTATGTGTCTTTC 60.129 42.308 0.00 0.00 0.00 2.62
4079 10641 5.694910 CGGTGTTCAACTACTATGTGTCTTT 59.305 40.000 0.00 0.00 0.00 2.52
4080 10642 5.221382 ACGGTGTTCAACTACTATGTGTCTT 60.221 40.000 0.00 0.00 0.00 3.01
4081 10643 4.280174 ACGGTGTTCAACTACTATGTGTCT 59.720 41.667 0.00 0.00 0.00 3.41
4082 10644 4.384846 CACGGTGTTCAACTACTATGTGTC 59.615 45.833 0.00 0.00 0.00 3.67
4083 10645 4.038282 TCACGGTGTTCAACTACTATGTGT 59.962 41.667 8.17 0.00 0.00 3.72
4088 10650 7.160547 TGAATATCACGGTGTTCAACTACTA 57.839 36.000 8.17 0.00 0.00 1.82
4180 10745 4.719773 TGAGCATAGGGTGTAGTGGTAATT 59.280 41.667 0.00 0.00 0.00 1.40
4182 10747 3.449737 GTGAGCATAGGGTGTAGTGGTAA 59.550 47.826 0.00 0.00 0.00 2.85
4183 10748 3.028850 GTGAGCATAGGGTGTAGTGGTA 58.971 50.000 0.00 0.00 0.00 3.25
4233 10798 4.319477 CCAACGCGGGTGAGAAATAATATG 60.319 45.833 12.47 0.00 0.00 1.78
4247 10812 3.617263 GCTAGATTATAATCCAACGCGGG 59.383 47.826 19.67 2.26 36.04 6.13
4248 10813 4.091509 GTGCTAGATTATAATCCAACGCGG 59.908 45.833 19.67 0.00 36.04 6.46
4249 10814 4.923871 AGTGCTAGATTATAATCCAACGCG 59.076 41.667 19.67 3.53 36.04 6.01
4251 10816 9.692749 TCTAAAGTGCTAGATTATAATCCAACG 57.307 33.333 19.67 8.60 36.04 4.10
4293 10863 7.066284 GCAATCAGACCAGAAGATAGCTTTTAA 59.934 37.037 0.00 0.00 33.61 1.52
4297 10867 4.080695 TGCAATCAGACCAGAAGATAGCTT 60.081 41.667 0.00 0.00 36.96 3.74
4310 10880 2.223433 GCTACCTGCAATGCAATCAGAC 60.223 50.000 9.92 0.00 38.41 3.51
4329 10899 4.458989 TGTAATCTTTTCATTGCTTCGGCT 59.541 37.500 0.00 0.00 42.37 5.52
4390 10960 9.865321 ATTCATATGAAAATCCTTGTTTCACTG 57.135 29.630 21.50 4.09 45.19 3.66
4407 10977 8.357796 CTTACGAAGCTCTGAAATTCATATGA 57.642 34.615 0.00 0.00 0.00 2.15
4482 11056 6.820152 ACTATAGGATACGTTTTTGGACAACC 59.180 38.462 4.43 0.00 46.39 3.77
4493 11067 2.590821 ACGCCCACTATAGGATACGTT 58.409 47.619 4.43 0.00 46.39 3.99
4496 11070 4.219944 TCATGAACGCCCACTATAGGATAC 59.780 45.833 4.43 0.00 0.00 2.24
4505 11079 1.750399 GGCATCATGAACGCCCACT 60.750 57.895 22.94 0.00 40.07 4.00
4515 11089 2.626743 GGATCAGAAAAGGGGCATCATG 59.373 50.000 0.00 0.00 0.00 3.07
4516 11090 2.517127 AGGATCAGAAAAGGGGCATCAT 59.483 45.455 0.00 0.00 0.00 2.45
4522 11136 3.359950 CCTTTCAGGATCAGAAAAGGGG 58.640 50.000 17.76 10.86 37.67 4.79
4531 11145 1.710244 TCCAAAGCCCTTTCAGGATCA 59.290 47.619 0.00 0.00 37.67 2.92
4532 11146 2.514458 TCCAAAGCCCTTTCAGGATC 57.486 50.000 0.00 0.00 37.67 3.36
4537 11151 1.216678 TCCACTTCCAAAGCCCTTTCA 59.783 47.619 0.00 0.00 0.00 2.69
4560 11174 8.023128 CCAAAAGAAGCGAGATGAATAAAAAGA 58.977 33.333 0.00 0.00 0.00 2.52
4561 11175 7.201384 GCCAAAAGAAGCGAGATGAATAAAAAG 60.201 37.037 0.00 0.00 0.00 2.27
4570 11184 1.808945 AGTGCCAAAAGAAGCGAGATG 59.191 47.619 0.00 0.00 0.00 2.90
4571 11185 2.191128 AGTGCCAAAAGAAGCGAGAT 57.809 45.000 0.00 0.00 0.00 2.75
4610 11224 7.099266 CACAAATCTCCCATTGTGCTAAATA 57.901 36.000 5.79 0.00 46.72 1.40
4620 11234 5.131142 CCTAGGAGTACACAAATCTCCCATT 59.869 44.000 1.05 0.00 46.15 3.16
4626 11240 2.772515 GCCCCTAGGAGTACACAAATCT 59.227 50.000 11.48 0.00 33.47 2.40
4634 11248 1.769716 GCCATGGCCCCTAGGAGTAC 61.770 65.000 27.24 0.00 33.47 2.73
4635 11249 1.461461 GCCATGGCCCCTAGGAGTA 60.461 63.158 27.24 0.00 33.47 2.59
4636 11250 2.774351 GCCATGGCCCCTAGGAGT 60.774 66.667 27.24 0.00 33.47 3.85
4637 11251 2.773918 TGCCATGGCCCCTAGGAG 60.774 66.667 33.44 0.00 41.09 3.69
4638 11252 2.773918 CTGCCATGGCCCCTAGGA 60.774 66.667 33.44 12.43 41.09 2.94
4639 11253 4.593125 GCTGCCATGGCCCCTAGG 62.593 72.222 33.44 16.45 41.09 3.02
4640 11254 4.593125 GGCTGCCATGGCCCCTAG 62.593 72.222 33.44 23.95 43.49 3.02
4655 11269 3.486383 TCCAATTATTGAATCCCGAGGC 58.514 45.455 6.50 0.00 0.00 4.70
4659 11273 7.801716 TTCTACTTCCAATTATTGAATCCCG 57.198 36.000 6.50 0.00 0.00 5.14
4673 11287 9.667107 CAATAGTCCACTTATTTTCTACTTCCA 57.333 33.333 0.00 0.00 0.00 3.53
4674 11288 9.886132 TCAATAGTCCACTTATTTTCTACTTCC 57.114 33.333 0.00 0.00 0.00 3.46
4683 11297 8.603304 ACCACTTACTCAATAGTCCACTTATTT 58.397 33.333 0.00 0.00 37.15 1.40
4691 11305 7.739498 TGAAAAACCACTTACTCAATAGTCC 57.261 36.000 0.00 0.00 37.15 3.85
4708 11322 8.069574 CCTGCCTTGATTAACAATTTGAAAAAC 58.930 33.333 2.79 0.00 37.88 2.43
4714 11328 5.540911 ACACCTGCCTTGATTAACAATTTG 58.459 37.500 0.00 0.00 37.88 2.32
4717 11331 5.511202 CCAAACACCTGCCTTGATTAACAAT 60.511 40.000 0.00 0.00 37.88 2.71
4726 11340 1.880027 GACTACCAAACACCTGCCTTG 59.120 52.381 0.00 0.00 0.00 3.61
4731 11345 1.000955 AGAGCGACTACCAAACACCTG 59.999 52.381 0.00 0.00 0.00 4.00
4732 11346 1.339097 AGAGCGACTACCAAACACCT 58.661 50.000 0.00 0.00 0.00 4.00
4734 11348 2.221055 CACAAGAGCGACTACCAAACAC 59.779 50.000 0.00 0.00 0.00 3.32
4735 11349 2.101750 TCACAAGAGCGACTACCAAACA 59.898 45.455 0.00 0.00 0.00 2.83
4736 11350 2.750948 TCACAAGAGCGACTACCAAAC 58.249 47.619 0.00 0.00 0.00 2.93
4739 11353 3.462483 TTTTCACAAGAGCGACTACCA 57.538 42.857 0.00 0.00 0.00 3.25
4741 11355 8.840867 CAAATAATTTTTCACAAGAGCGACTAC 58.159 33.333 0.00 0.00 0.00 2.73
4746 11361 5.348451 CCCCAAATAATTTTTCACAAGAGCG 59.652 40.000 0.00 0.00 0.00 5.03
4754 11369 8.226819 GGTTTTTGACCCCAAATAATTTTTCA 57.773 30.769 0.00 0.00 43.06 2.69
4770 11385 8.277270 CTTAACCGATTTAAGTGGTTTTTGAC 57.723 34.615 11.74 0.00 43.23 3.18
4785 11400 6.769341 GTCCATTGGGTATAACTTAACCGATT 59.231 38.462 2.09 0.00 36.57 3.34
4798 11413 4.642885 CCAAAACGTATGTCCATTGGGTAT 59.357 41.667 14.84 0.62 34.81 2.73
4799 11414 4.011023 CCAAAACGTATGTCCATTGGGTA 58.989 43.478 14.84 0.00 34.81 3.69
4806 11421 2.106857 ACCCTTCCAAAACGTATGTCCA 59.893 45.455 0.00 0.00 0.00 4.02
4828 11443 5.192522 AGAATGTGTCCTTAACCCTCATGAT 59.807 40.000 0.00 0.00 0.00 2.45
4830 11445 4.848357 AGAATGTGTCCTTAACCCTCATG 58.152 43.478 0.00 0.00 0.00 3.07
4831 11446 5.520748 AAGAATGTGTCCTTAACCCTCAT 57.479 39.130 0.00 0.00 0.00 2.90
4861 11476 7.844009 TCTTCATTCCCTACATTAAACGTACT 58.156 34.615 0.00 0.00 0.00 2.73
4865 11480 8.208718 TGATTCTTCATTCCCTACATTAAACG 57.791 34.615 0.00 0.00 0.00 3.60
4891 11506 6.730447 TCCATTTGTCCTATGGAAATCTCAA 58.270 36.000 2.21 0.00 46.46 3.02
4900 11515 3.117169 TCCCCAATCCATTTGTCCTATGG 60.117 47.826 0.00 0.00 43.22 2.74
4901 11516 3.891366 GTCCCCAATCCATTTGTCCTATG 59.109 47.826 0.00 0.00 33.15 2.23
4902 11517 3.531397 TGTCCCCAATCCATTTGTCCTAT 59.469 43.478 0.00 0.00 33.15 2.57
4903 11518 2.922955 TGTCCCCAATCCATTTGTCCTA 59.077 45.455 0.00 0.00 33.15 2.94
4923 11539 3.711704 TCCACCTAGCTAAAAGGAGGATG 59.288 47.826 14.31 5.27 45.56 3.51
4924 11540 4.008916 TCCACCTAGCTAAAAGGAGGAT 57.991 45.455 14.31 0.00 45.56 3.24
4926 11542 4.779993 AATCCACCTAGCTAAAAGGAGG 57.220 45.455 10.43 10.43 43.95 4.30
4951 11569 9.555727 GTGGCATCCTTCTAAGTAACAATATTA 57.444 33.333 0.00 0.00 0.00 0.98
4952 11570 8.275040 AGTGGCATCCTTCTAAGTAACAATATT 58.725 33.333 0.00 0.00 0.00 1.28
4953 11571 7.716998 CAGTGGCATCCTTCTAAGTAACAATAT 59.283 37.037 0.00 0.00 0.00 1.28
4961 11579 5.700402 ATTACAGTGGCATCCTTCTAAGT 57.300 39.130 0.00 0.00 0.00 2.24
4962 11580 5.882557 ACAATTACAGTGGCATCCTTCTAAG 59.117 40.000 0.00 0.00 0.00 2.18
4966 11584 4.218417 ACAACAATTACAGTGGCATCCTTC 59.782 41.667 0.00 0.00 0.00 3.46
5016 11634 2.029470 CCGCTAAATGACAGCCCAAAAA 60.029 45.455 0.00 0.00 35.53 1.94
5017 11635 1.543802 CCGCTAAATGACAGCCCAAAA 59.456 47.619 0.00 0.00 35.53 2.44
5018 11636 1.173043 CCGCTAAATGACAGCCCAAA 58.827 50.000 0.00 0.00 35.53 3.28
5021 11639 1.103398 ATGCCGCTAAATGACAGCCC 61.103 55.000 0.00 0.00 35.53 5.19
5022 11640 0.740737 AATGCCGCTAAATGACAGCC 59.259 50.000 0.00 0.00 35.53 4.85
5024 11642 3.621794 GCTAAATGCCGCTAAATGACAG 58.378 45.455 0.00 0.00 35.15 3.51
5027 11645 1.601903 CCGCTAAATGCCGCTAAATGA 59.398 47.619 0.00 0.00 38.78 2.57
5028 11646 1.601903 TCCGCTAAATGCCGCTAAATG 59.398 47.619 0.00 0.00 38.78 2.32
5029 11647 1.873591 CTCCGCTAAATGCCGCTAAAT 59.126 47.619 0.00 0.00 38.78 1.40
5036 11661 3.202906 TCATTGTACTCCGCTAAATGCC 58.797 45.455 0.00 0.00 38.78 4.40
5051 11676 3.461085 AGCCTTGAGGACCATATCATTGT 59.539 43.478 0.06 0.00 37.39 2.71
5061 11686 1.301293 CTTCCCAGCCTTGAGGACC 59.699 63.158 0.06 0.00 37.39 4.46
5066 11691 2.005606 TTGCACCTTCCCAGCCTTGA 62.006 55.000 0.00 0.00 0.00 3.02
5075 11700 4.254492 CTCCTAAGTTAGTTGCACCTTCC 58.746 47.826 9.05 0.00 0.00 3.46
5080 11705 2.412089 CGTGCTCCTAAGTTAGTTGCAC 59.588 50.000 28.75 28.75 43.33 4.57
5095 11720 2.673368 CCCACTTAAATGACTCGTGCTC 59.327 50.000 0.00 0.00 0.00 4.26
5100 11725 5.419542 TGAAGATCCCACTTAAATGACTCG 58.580 41.667 0.00 0.00 0.00 4.18
5118 11743 3.377253 ACGACCCCAGTAGTATGAAGA 57.623 47.619 0.00 0.00 29.08 2.87
5127 11752 4.603131 AGTATACAAGAACGACCCCAGTA 58.397 43.478 5.50 0.00 0.00 2.74
5128 11753 3.438183 AGTATACAAGAACGACCCCAGT 58.562 45.455 5.50 0.00 0.00 4.00
5129 11754 3.181478 GGAGTATACAAGAACGACCCCAG 60.181 52.174 5.50 0.00 0.00 4.45
5136 11761 8.475331 AAAAGTACATGGAGTATACAAGAACG 57.525 34.615 5.50 0.00 34.67 3.95
5137 11762 9.654663 AGAAAAGTACATGGAGTATACAAGAAC 57.345 33.333 5.50 0.00 34.67 3.01
5161 11786 7.819521 ATCTGACCCATATATCCATTGAAGA 57.180 36.000 0.00 0.00 0.00 2.87
5205 11831 8.336498 TCGATTCTTAGATGTAGTTTAAAGCG 57.664 34.615 0.00 0.00 0.00 4.68
5214 11840 8.918961 AAAGACACTTCGATTCTTAGATGTAG 57.081 34.615 0.00 0.00 0.00 2.74
5256 11882 7.504238 ACATTCTGTGTCCCATTTAAACAAGTA 59.496 33.333 0.00 0.00 35.77 2.24
5268 11894 4.225042 ACATAAGCTACATTCTGTGTCCCA 59.775 41.667 0.00 0.00 42.29 4.37
5273 11899 5.290885 TGCGTAACATAAGCTACATTCTGTG 59.709 40.000 0.00 0.00 34.19 3.66
5277 11903 8.239681 TCATATGCGTAACATAAGCTACATTC 57.760 34.615 0.00 0.00 44.36 2.67
5280 11906 7.709182 AGTTTCATATGCGTAACATAAGCTACA 59.291 33.333 13.83 0.00 44.36 2.74
5294 11920 6.128445 GGAGATGTTGGATAGTTTCATATGCG 60.128 42.308 0.00 0.00 0.00 4.73
5296 11922 8.915057 AAGGAGATGTTGGATAGTTTCATATG 57.085 34.615 0.00 0.00 0.00 1.78
5310 11936 7.029563 GCTAAACCACAATAAAGGAGATGTTG 58.970 38.462 0.00 0.00 0.00 3.33
5311 11937 6.719370 TGCTAAACCACAATAAAGGAGATGTT 59.281 34.615 0.00 0.00 0.00 2.71
5312 11938 6.151144 GTGCTAAACCACAATAAAGGAGATGT 59.849 38.462 0.00 0.00 35.80 3.06
5315 11941 4.693566 CGTGCTAAACCACAATAAAGGAGA 59.306 41.667 0.00 0.00 35.47 3.71
5317 11943 4.391155 ACGTGCTAAACCACAATAAAGGA 58.609 39.130 0.00 0.00 35.47 3.36
5318 11944 4.759516 ACGTGCTAAACCACAATAAAGG 57.240 40.909 0.00 0.00 35.47 3.11
5324 11953 5.932883 TGATACAATACGTGCTAAACCACAA 59.067 36.000 0.00 0.00 35.47 3.33
5333 11962 4.576053 ACAATGCATGATACAATACGTGCT 59.424 37.500 0.00 0.00 45.59 4.40
5352 11981 8.322091 GGTGATATTAGAGGCCAAGTATACAAT 58.678 37.037 5.01 0.00 0.00 2.71
5357 11986 6.014156 GTGAGGTGATATTAGAGGCCAAGTAT 60.014 42.308 5.01 0.00 0.00 2.12
5366 11997 8.183104 TGATACAAGGTGAGGTGATATTAGAG 57.817 38.462 0.00 0.00 0.00 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.