Multiple sequence alignment - TraesCS1A01G029300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G029300 chr1A 100.000 7312 0 0 1 7312 13761850 13769161 0.000000e+00 13503.0
1 TraesCS1A01G029300 chr1A 88.994 845 73 16 3823 4657 16916430 16917264 0.000000e+00 1027.0
2 TraesCS1A01G029300 chr1A 92.090 354 13 7 2875 3228 14525660 14525998 1.100000e-132 484.0
3 TraesCS1A01G029300 chr1A 87.531 401 43 4 5239 5638 16917926 16918320 2.400000e-124 457.0
4 TraesCS1A01G029300 chr1A 84.438 347 48 6 2365 2707 16915030 16915374 3.270000e-88 337.0
5 TraesCS1A01G029300 chr1A 82.891 339 52 5 988 1320 16913905 16914243 4.290000e-77 300.0
6 TraesCS1A01G029300 chr1A 85.461 282 33 8 3302 3576 16915822 16916102 3.340000e-73 287.0
7 TraesCS1A01G029300 chr1A 86.400 125 15 2 4684 4807 16917258 16917381 1.280000e-27 135.0
8 TraesCS1A01G029300 chr1D 95.642 3419 108 27 1449 4846 11618853 11622251 0.000000e+00 5450.0
9 TraesCS1A01G029300 chr1D 90.819 1808 61 43 4877 6633 11622349 11624102 0.000000e+00 2322.0
10 TraesCS1A01G029300 chr1D 87.914 1117 42 26 285 1377 11617791 11618838 0.000000e+00 1229.0
11 TraesCS1A01G029300 chr1D 84.744 780 87 19 3575 4325 16406271 16405495 0.000000e+00 752.0
12 TraesCS1A01G029300 chr1D 91.667 552 28 6 6763 7312 11628425 11628960 0.000000e+00 749.0
13 TraesCS1A01G029300 chr1D 83.249 591 75 15 5065 5641 16404486 16403906 8.410000e-144 521.0
14 TraesCS1A01G029300 chr1D 93.103 290 18 2 4334 4621 16405444 16405155 2.440000e-114 424.0
15 TraesCS1A01G029300 chr1D 85.037 401 51 8 2365 2761 16407386 16406991 4.110000e-107 399.0
16 TraesCS1A01G029300 chr1D 86.614 254 27 7 3330 3576 16406560 16406307 2.600000e-69 274.0
17 TraesCS1A01G029300 chr1B 94.508 2258 84 12 2612 4846 17382322 17384562 0.000000e+00 3446.0
18 TraesCS1A01G029300 chr1B 89.850 1803 82 42 4875 6624 17384821 17386575 0.000000e+00 2222.0
19 TraesCS1A01G029300 chr1B 95.710 676 20 6 1412 2083 17380865 17381535 0.000000e+00 1079.0
20 TraesCS1A01G029300 chr1B 88.553 795 46 14 547 1322 17380098 17380866 0.000000e+00 922.0
21 TraesCS1A01G029300 chr1B 95.944 567 17 5 2052 2613 17381674 17382239 0.000000e+00 915.0
22 TraesCS1A01G029300 chr1B 91.808 354 14 7 2875 3228 154151080 154150742 5.130000e-131 479.0
23 TraesCS1A01G029300 chr1B 85.901 383 30 10 119 493 17379734 17380100 3.200000e-103 387.0
24 TraesCS1A01G029300 chr1B 95.918 49 2 0 6712 6760 17386677 17386725 6.080000e-11 80.5
25 TraesCS1A01G029300 chr7D 92.938 354 10 10 2875 3228 509909778 509910116 1.100000e-137 501.0
26 TraesCS1A01G029300 chr4D 92.655 354 11 10 2875 3228 40835348 40835010 5.100000e-136 496.0
27 TraesCS1A01G029300 chr5D 92.373 354 12 3 2875 3228 254529161 254529499 2.370000e-134 490.0
28 TraesCS1A01G029300 chr7A 91.808 354 14 7 2875 3228 678168605 678168943 5.130000e-131 479.0
29 TraesCS1A01G029300 chr2A 91.808 354 14 7 2875 3228 195115976 195115638 5.130000e-131 479.0
30 TraesCS1A01G029300 chr2A 91.525 354 15 4 2875 3228 721738141 721737803 2.390000e-129 473.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G029300 chr1A 13761850 13769161 7311 False 13503.000000 13503 100.000000 1 7312 1 chr1A.!!$F1 7311
1 TraesCS1A01G029300 chr1A 16913905 16918320 4415 False 423.833333 1027 85.952500 988 5638 6 chr1A.!!$F3 4650
2 TraesCS1A01G029300 chr1D 11617791 11624102 6311 False 3000.333333 5450 91.458333 285 6633 3 chr1D.!!$F2 6348
3 TraesCS1A01G029300 chr1D 11628425 11628960 535 False 749.000000 749 91.667000 6763 7312 1 chr1D.!!$F1 549
4 TraesCS1A01G029300 chr1D 16403906 16407386 3480 True 474.000000 752 86.549400 2365 5641 5 chr1D.!!$R1 3276
5 TraesCS1A01G029300 chr1B 17379734 17386725 6991 False 1293.071429 3446 92.340571 119 6760 7 chr1B.!!$F1 6641

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
724 739 0.032815 CCGTTTGTCCGCCCAAATTT 59.967 50.000 1.78 0.00 36.75 1.82 F
1403 1448 0.037975 CGCCCATGCAAGCTCTTTTT 60.038 50.000 0.00 0.00 37.32 1.94 F
2263 2614 1.914634 CACTCTGTACAGGCTTAGCG 58.085 55.000 22.48 3.17 0.00 4.26 F
3667 4181 1.522668 TTGGTTCTGAAGTGGATGCG 58.477 50.000 0.00 0.00 0.00 4.73 F
4039 4652 1.737363 GCTCCAGAACCTCGTGATGTC 60.737 57.143 0.00 0.00 0.00 3.06 F
4277 4890 2.503765 TGGCGTCTCCATAGATTTTCCA 59.496 45.455 0.00 0.00 40.72 3.53 F
5121 6286 0.107993 TGTGCTAGGTGCTGCTGATC 60.108 55.000 0.00 0.00 43.37 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2663 3101 0.397941 AACTTGCTAGTCTGCCAGCA 59.602 50.000 0.07 0.0 45.72 4.41 R
2867 3308 1.824230 TGCAGTCACAAAGGTGCTTTT 59.176 42.857 0.00 0.0 44.87 2.27 R
3916 4529 1.479323 ACAAAGGCTGCTGGCATAATG 59.521 47.619 19.23 13.2 44.01 1.90 R
5067 6194 0.321564 CGATGTTCCAGCCAAGTCCA 60.322 55.000 0.00 0.0 0.00 4.02 R
5072 6199 0.323302 TACAGCGATGTTCCAGCCAA 59.677 50.000 13.34 0.0 0.00 4.52 R
6146 7338 0.660595 CGTCGTCGCTCTTGAACACT 60.661 55.000 0.00 0.0 0.00 3.55 R
6964 8201 0.389391 GATGCTCGTTGCCCTAGCTA 59.611 55.000 0.00 0.0 42.00 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.423154 GCTGGGTTGACTTCCGCG 61.423 66.667 0.00 0.00 0.00 6.46
18 19 3.423154 CTGGGTTGACTTCCGCGC 61.423 66.667 0.00 0.00 0.00 6.86
19 20 4.243008 TGGGTTGACTTCCGCGCA 62.243 61.111 8.75 0.00 0.00 6.09
20 21 3.423154 GGGTTGACTTCCGCGCAG 61.423 66.667 8.75 0.27 0.00 5.18
34 35 3.406682 CGCAGCAAATTTGGAGGTC 57.593 52.632 19.47 2.67 0.00 3.85
35 36 0.454957 CGCAGCAAATTTGGAGGTCG 60.455 55.000 19.47 2.92 0.00 4.79
36 37 0.109132 GCAGCAAATTTGGAGGTCGG 60.109 55.000 19.47 4.68 0.00 4.79
37 38 0.109132 CAGCAAATTTGGAGGTCGGC 60.109 55.000 19.47 2.68 0.00 5.54
38 39 1.154035 GCAAATTTGGAGGTCGGCG 60.154 57.895 19.47 0.00 0.00 6.46
39 40 1.862602 GCAAATTTGGAGGTCGGCGT 61.863 55.000 19.47 0.00 0.00 5.68
40 41 1.444836 CAAATTTGGAGGTCGGCGTA 58.555 50.000 10.49 0.00 0.00 4.42
41 42 2.014128 CAAATTTGGAGGTCGGCGTAT 58.986 47.619 10.49 0.00 0.00 3.06
42 43 1.949465 AATTTGGAGGTCGGCGTATC 58.051 50.000 6.85 3.41 0.00 2.24
43 44 0.828022 ATTTGGAGGTCGGCGTATCA 59.172 50.000 6.85 0.00 0.00 2.15
44 45 0.828022 TTTGGAGGTCGGCGTATCAT 59.172 50.000 6.85 0.00 0.00 2.45
45 46 0.387929 TTGGAGGTCGGCGTATCATC 59.612 55.000 6.85 6.22 0.00 2.92
46 47 0.753848 TGGAGGTCGGCGTATCATCA 60.754 55.000 6.85 0.00 0.00 3.07
47 48 0.387929 GGAGGTCGGCGTATCATCAA 59.612 55.000 6.85 0.00 0.00 2.57
48 49 1.000955 GGAGGTCGGCGTATCATCAAT 59.999 52.381 6.85 0.00 0.00 2.57
49 50 2.548067 GGAGGTCGGCGTATCATCAATT 60.548 50.000 6.85 0.00 0.00 2.32
50 51 3.131396 GAGGTCGGCGTATCATCAATTT 58.869 45.455 6.85 0.00 0.00 1.82
51 52 3.131396 AGGTCGGCGTATCATCAATTTC 58.869 45.455 6.85 0.00 0.00 2.17
52 53 2.223377 GGTCGGCGTATCATCAATTTCC 59.777 50.000 6.85 0.00 0.00 3.13
53 54 3.131396 GTCGGCGTATCATCAATTTCCT 58.869 45.455 6.85 0.00 0.00 3.36
54 55 3.184581 GTCGGCGTATCATCAATTTCCTC 59.815 47.826 6.85 0.00 0.00 3.71
55 56 3.130633 CGGCGTATCATCAATTTCCTCA 58.869 45.455 0.00 0.00 0.00 3.86
56 57 3.748048 CGGCGTATCATCAATTTCCTCAT 59.252 43.478 0.00 0.00 0.00 2.90
57 58 4.143030 CGGCGTATCATCAATTTCCTCATC 60.143 45.833 0.00 0.00 0.00 2.92
58 59 4.154918 GGCGTATCATCAATTTCCTCATCC 59.845 45.833 0.00 0.00 0.00 3.51
59 60 4.999950 GCGTATCATCAATTTCCTCATCCT 59.000 41.667 0.00 0.00 0.00 3.24
60 61 5.106791 GCGTATCATCAATTTCCTCATCCTG 60.107 44.000 0.00 0.00 0.00 3.86
61 62 5.994054 CGTATCATCAATTTCCTCATCCTGT 59.006 40.000 0.00 0.00 0.00 4.00
62 63 6.146837 CGTATCATCAATTTCCTCATCCTGTC 59.853 42.308 0.00 0.00 0.00 3.51
63 64 4.785301 TCATCAATTTCCTCATCCTGTCC 58.215 43.478 0.00 0.00 0.00 4.02
64 65 3.266510 TCAATTTCCTCATCCTGTCCG 57.733 47.619 0.00 0.00 0.00 4.79
65 66 1.672881 CAATTTCCTCATCCTGTCCGC 59.327 52.381 0.00 0.00 0.00 5.54
66 67 0.911769 ATTTCCTCATCCTGTCCGCA 59.088 50.000 0.00 0.00 0.00 5.69
67 68 0.911769 TTTCCTCATCCTGTCCGCAT 59.088 50.000 0.00 0.00 0.00 4.73
68 69 0.911769 TTCCTCATCCTGTCCGCATT 59.088 50.000 0.00 0.00 0.00 3.56
69 70 0.178767 TCCTCATCCTGTCCGCATTG 59.821 55.000 0.00 0.00 0.00 2.82
70 71 0.107508 CCTCATCCTGTCCGCATTGT 60.108 55.000 0.00 0.00 0.00 2.71
71 72 1.679944 CCTCATCCTGTCCGCATTGTT 60.680 52.381 0.00 0.00 0.00 2.83
72 73 1.399440 CTCATCCTGTCCGCATTGTTG 59.601 52.381 0.00 0.00 0.00 3.33
73 74 0.452987 CATCCTGTCCGCATTGTTGG 59.547 55.000 0.00 0.00 0.00 3.77
74 75 0.327924 ATCCTGTCCGCATTGTTGGA 59.672 50.000 0.00 0.00 0.00 3.53
75 76 0.109532 TCCTGTCCGCATTGTTGGAA 59.890 50.000 1.95 0.00 35.67 3.53
76 77 0.240945 CCTGTCCGCATTGTTGGAAC 59.759 55.000 1.95 0.00 35.67 3.62
77 78 1.238439 CTGTCCGCATTGTTGGAACT 58.762 50.000 1.95 0.00 35.67 3.01
78 79 1.197721 CTGTCCGCATTGTTGGAACTC 59.802 52.381 1.95 0.00 35.67 3.01
79 80 0.165944 GTCCGCATTGTTGGAACTCG 59.834 55.000 1.95 0.00 35.67 4.18
80 81 0.953471 TCCGCATTGTTGGAACTCGG 60.953 55.000 0.00 0.00 37.00 4.63
81 82 0.953471 CCGCATTGTTGGAACTCGGA 60.953 55.000 0.00 0.00 37.79 4.55
82 83 0.871722 CGCATTGTTGGAACTCGGAA 59.128 50.000 0.00 0.00 0.00 4.30
83 84 1.135972 CGCATTGTTGGAACTCGGAAG 60.136 52.381 0.00 0.00 0.00 3.46
84 85 1.401539 GCATTGTTGGAACTCGGAAGC 60.402 52.381 0.00 0.00 0.00 3.86
85 86 1.879380 CATTGTTGGAACTCGGAAGCA 59.121 47.619 0.00 0.00 0.00 3.91
86 87 1.593196 TTGTTGGAACTCGGAAGCAG 58.407 50.000 0.00 0.00 0.00 4.24
87 88 0.756294 TGTTGGAACTCGGAAGCAGA 59.244 50.000 0.00 0.00 0.00 4.26
88 89 1.270305 TGTTGGAACTCGGAAGCAGAG 60.270 52.381 0.00 0.00 41.27 3.35
89 90 0.321671 TTGGAACTCGGAAGCAGAGG 59.678 55.000 0.00 0.00 39.90 3.69
90 91 0.541998 TGGAACTCGGAAGCAGAGGA 60.542 55.000 0.00 0.00 39.90 3.71
91 92 0.174617 GGAACTCGGAAGCAGAGGAG 59.825 60.000 0.00 0.00 39.90 3.69
92 93 0.459411 GAACTCGGAAGCAGAGGAGC 60.459 60.000 0.00 0.00 39.90 4.70
93 94 1.893919 AACTCGGAAGCAGAGGAGCC 61.894 60.000 0.00 0.00 39.90 4.70
94 95 2.283894 TCGGAAGCAGAGGAGCCA 60.284 61.111 0.00 0.00 34.23 4.75
95 96 1.892819 CTCGGAAGCAGAGGAGCCAA 61.893 60.000 0.00 0.00 34.23 4.52
96 97 1.003355 CGGAAGCAGAGGAGCCAAA 60.003 57.895 0.00 0.00 34.23 3.28
97 98 0.606401 CGGAAGCAGAGGAGCCAAAA 60.606 55.000 0.00 0.00 34.23 2.44
98 99 1.844687 GGAAGCAGAGGAGCCAAAAT 58.155 50.000 0.00 0.00 34.23 1.82
99 100 2.680805 CGGAAGCAGAGGAGCCAAAATA 60.681 50.000 0.00 0.00 34.23 1.40
100 101 3.356290 GGAAGCAGAGGAGCCAAAATAA 58.644 45.455 0.00 0.00 34.23 1.40
101 102 3.763897 GGAAGCAGAGGAGCCAAAATAAA 59.236 43.478 0.00 0.00 34.23 1.40
102 103 4.403752 GGAAGCAGAGGAGCCAAAATAAAT 59.596 41.667 0.00 0.00 34.23 1.40
103 104 5.594317 GGAAGCAGAGGAGCCAAAATAAATA 59.406 40.000 0.00 0.00 34.23 1.40
104 105 6.456795 AAGCAGAGGAGCCAAAATAAATAC 57.543 37.500 0.00 0.00 34.23 1.89
105 106 4.576463 AGCAGAGGAGCCAAAATAAATACG 59.424 41.667 0.00 0.00 34.23 3.06
106 107 4.335594 GCAGAGGAGCCAAAATAAATACGT 59.664 41.667 0.00 0.00 0.00 3.57
107 108 5.163652 GCAGAGGAGCCAAAATAAATACGTT 60.164 40.000 0.00 0.00 0.00 3.99
108 109 6.625081 GCAGAGGAGCCAAAATAAATACGTTT 60.625 38.462 0.00 0.00 0.00 3.60
109 110 7.312899 CAGAGGAGCCAAAATAAATACGTTTT 58.687 34.615 0.00 0.00 0.00 2.43
110 111 7.812669 CAGAGGAGCCAAAATAAATACGTTTTT 59.187 33.333 8.98 8.98 0.00 1.94
148 149 4.389664 TCTTTCTGTTCGCGAAATCTTG 57.610 40.909 25.24 12.28 30.75 3.02
154 155 2.239341 TTCGCGAAATCTTGGCTGCG 62.239 55.000 21.14 0.00 46.27 5.18
186 187 2.103094 GCTGGCCAGAATTATTTTCCCC 59.897 50.000 37.21 9.74 0.00 4.81
187 188 3.646534 CTGGCCAGAATTATTTTCCCCT 58.353 45.455 29.88 0.00 0.00 4.79
193 194 3.632145 CAGAATTATTTTCCCCTCCGTGG 59.368 47.826 0.00 0.00 0.00 4.94
229 230 4.512944 CACCACCATCTTCCATTATTCTCG 59.487 45.833 0.00 0.00 0.00 4.04
230 231 3.499918 CCACCATCTTCCATTATTCTCGC 59.500 47.826 0.00 0.00 0.00 5.03
232 233 3.136443 ACCATCTTCCATTATTCTCGCCA 59.864 43.478 0.00 0.00 0.00 5.69
264 268 5.765182 AGACAGAAACAGGACAAATACTTGG 59.235 40.000 0.00 0.00 36.82 3.61
271 275 7.418337 AACAGGACAAATACTTGGTCTTTTT 57.582 32.000 0.00 0.00 36.82 1.94
273 277 6.040504 ACAGGACAAATACTTGGTCTTTTTCC 59.959 38.462 5.94 5.94 36.82 3.13
280 284 0.848053 TTGGTCTTTTTCCCCGGAGT 59.152 50.000 0.73 0.00 0.00 3.85
281 285 0.848053 TGGTCTTTTTCCCCGGAGTT 59.152 50.000 0.73 0.00 0.00 3.01
338 342 7.255569 GTGATACGCTGCCAATAGTATATACA 58.744 38.462 15.18 2.02 30.82 2.29
339 343 7.921214 GTGATACGCTGCCAATAGTATATACAT 59.079 37.037 15.18 4.20 30.82 2.29
340 344 9.127277 TGATACGCTGCCAATAGTATATACATA 57.873 33.333 15.18 5.32 30.82 2.29
344 348 8.909923 ACGCTGCCAATAGTATATACATATACA 58.090 33.333 15.18 5.28 44.70 2.29
427 434 3.974293 GGGCCCCTGAACCCGAAA 61.974 66.667 12.23 0.00 36.07 3.46
428 435 2.675423 GGCCCCTGAACCCGAAAC 60.675 66.667 0.00 0.00 0.00 2.78
429 436 2.675423 GCCCCTGAACCCGAAACC 60.675 66.667 0.00 0.00 0.00 3.27
430 437 2.035155 CCCCTGAACCCGAAACCC 59.965 66.667 0.00 0.00 0.00 4.11
431 438 2.535331 CCCCTGAACCCGAAACCCT 61.535 63.158 0.00 0.00 0.00 4.34
433 440 1.489560 CCCTGAACCCGAAACCCTCT 61.490 60.000 0.00 0.00 0.00 3.69
508 515 1.702491 GGACGGCTGATACGCAAACC 61.702 60.000 0.00 0.00 34.00 3.27
509 516 1.702491 GACGGCTGATACGCAAACCC 61.702 60.000 0.00 0.00 34.00 4.11
510 517 1.743623 CGGCTGATACGCAAACCCA 60.744 57.895 0.00 0.00 0.00 4.51
511 518 1.095228 CGGCTGATACGCAAACCCAT 61.095 55.000 0.00 0.00 0.00 4.00
512 519 0.663153 GGCTGATACGCAAACCCATC 59.337 55.000 0.00 0.00 0.00 3.51
513 520 0.663153 GCTGATACGCAAACCCATCC 59.337 55.000 0.00 0.00 0.00 3.51
514 521 2.016604 GCTGATACGCAAACCCATCCA 61.017 52.381 0.00 0.00 0.00 3.41
515 522 2.575532 CTGATACGCAAACCCATCCAT 58.424 47.619 0.00 0.00 0.00 3.41
516 523 2.549754 CTGATACGCAAACCCATCCATC 59.450 50.000 0.00 0.00 0.00 3.51
654 669 0.178953 ATTGGAGGTGCTTTGGCTGT 60.179 50.000 0.00 0.00 39.59 4.40
655 670 1.108727 TTGGAGGTGCTTTGGCTGTG 61.109 55.000 0.00 0.00 39.59 3.66
724 739 0.032815 CCGTTTGTCCGCCCAAATTT 59.967 50.000 1.78 0.00 36.75 1.82
786 801 1.674651 AGTCATGCTGTGCTGGCAG 60.675 57.895 10.94 10.94 43.15 4.85
820 837 7.827819 TGTAGATGTACAACTAAATCAGTGC 57.172 36.000 13.81 1.28 37.63 4.40
849 879 2.916716 GTTTCATACATTTGTGGCGCAG 59.083 45.455 10.83 0.00 0.00 5.18
854 884 1.569708 ACATTTGTGGCGCAGTTTTG 58.430 45.000 10.83 1.52 0.00 2.44
855 885 1.134848 ACATTTGTGGCGCAGTTTTGT 60.135 42.857 10.83 2.23 0.00 2.83
856 886 1.932511 CATTTGTGGCGCAGTTTTGTT 59.067 42.857 10.83 0.00 0.00 2.83
857 887 2.086054 TTTGTGGCGCAGTTTTGTTT 57.914 40.000 10.83 0.00 0.00 2.83
858 888 2.086054 TTGTGGCGCAGTTTTGTTTT 57.914 40.000 10.83 0.00 0.00 2.43
903 933 3.120820 TCACGTTTGTGTGACATTATCGC 60.121 43.478 0.00 0.00 46.49 4.58
904 934 3.064207 ACGTTTGTGTGACATTATCGCT 58.936 40.909 0.00 0.00 38.75 4.93
911 941 3.060940 GTGTGACATTATCGCTCATCGTG 60.061 47.826 0.00 0.00 38.75 4.35
918 948 1.361668 ATCGCTCATCGTGTGGTTGC 61.362 55.000 0.00 0.00 39.67 4.17
947 977 4.680110 GTCATTCTAACATCATACGGTCCG 59.320 45.833 10.48 10.48 0.00 4.79
975 1005 0.249911 GGCCGTGTTCTCTGTCAAGT 60.250 55.000 0.00 0.00 0.00 3.16
978 1008 3.326747 GCCGTGTTCTCTGTCAAGTTAT 58.673 45.455 0.00 0.00 0.00 1.89
979 1009 3.746492 GCCGTGTTCTCTGTCAAGTTATT 59.254 43.478 0.00 0.00 0.00 1.40
980 1010 4.927425 GCCGTGTTCTCTGTCAAGTTATTA 59.073 41.667 0.00 0.00 0.00 0.98
982 1012 6.401153 GCCGTGTTCTCTGTCAAGTTATTAAG 60.401 42.308 0.00 0.00 0.00 1.85
983 1013 6.645415 CCGTGTTCTCTGTCAAGTTATTAAGT 59.355 38.462 0.00 0.00 0.00 2.24
984 1014 7.148787 CCGTGTTCTCTGTCAAGTTATTAAGTC 60.149 40.741 0.00 0.00 0.00 3.01
1311 1348 6.413052 TGTCTATCTACGGATATACCTCACC 58.587 44.000 0.00 0.00 33.37 4.02
1345 1390 2.126580 CTTTGCGCTCTTGCTGGC 60.127 61.111 9.73 0.00 36.97 4.85
1354 1399 0.956633 CTCTTGCTGGCTCTTTGCAA 59.043 50.000 0.00 0.00 45.15 4.08
1360 1405 1.799258 CTGGCTCTTTGCAACCGCTT 61.799 55.000 0.00 0.00 45.15 4.68
1377 1422 6.380095 ACCGCTTGTCTTTGTTGTTTATTA 57.620 33.333 0.00 0.00 0.00 0.98
1379 1424 8.101654 ACCGCTTGTCTTTGTTGTTTATTATA 57.898 30.769 0.00 0.00 0.00 0.98
1380 1425 8.736244 ACCGCTTGTCTTTGTTGTTTATTATAT 58.264 29.630 0.00 0.00 0.00 0.86
1381 1426 9.567848 CCGCTTGTCTTTGTTGTTTATTATATT 57.432 29.630 0.00 0.00 0.00 1.28
1386 1431 9.991388 TGTCTTTGTTGTTTATTATATTACCGC 57.009 29.630 0.00 0.00 0.00 5.68
1387 1432 9.442033 GTCTTTGTTGTTTATTATATTACCGCC 57.558 33.333 0.00 0.00 0.00 6.13
1388 1433 8.623030 TCTTTGTTGTTTATTATATTACCGCCC 58.377 33.333 0.00 0.00 0.00 6.13
1389 1434 7.876936 TTGTTGTTTATTATATTACCGCCCA 57.123 32.000 0.00 0.00 0.00 5.36
1390 1435 8.466617 TTGTTGTTTATTATATTACCGCCCAT 57.533 30.769 0.00 0.00 0.00 4.00
1391 1436 7.877003 TGTTGTTTATTATATTACCGCCCATG 58.123 34.615 0.00 0.00 0.00 3.66
1392 1437 6.503589 TGTTTATTATATTACCGCCCATGC 57.496 37.500 0.00 0.00 0.00 4.06
1393 1438 6.004574 TGTTTATTATATTACCGCCCATGCA 58.995 36.000 0.00 0.00 37.32 3.96
1394 1439 6.490381 TGTTTATTATATTACCGCCCATGCAA 59.510 34.615 0.00 0.00 37.32 4.08
1396 1441 1.247567 ATATTACCGCCCATGCAAGC 58.752 50.000 0.00 0.00 37.32 4.01
1398 1443 1.103398 ATTACCGCCCATGCAAGCTC 61.103 55.000 0.00 0.00 37.32 4.09
1399 1444 2.196997 TTACCGCCCATGCAAGCTCT 62.197 55.000 0.00 0.00 37.32 4.09
1402 1447 1.588082 CGCCCATGCAAGCTCTTTT 59.412 52.632 0.00 0.00 37.32 2.27
1403 1448 0.037975 CGCCCATGCAAGCTCTTTTT 60.038 50.000 0.00 0.00 37.32 1.94
1545 1593 9.054922 ACTACCAAATTTAGTGCTTTTTACGTA 57.945 29.630 0.00 0.00 0.00 3.57
1570 1618 4.795469 TGTTGCATGGGAATGATGTCTAT 58.205 39.130 0.00 0.00 0.00 1.98
1633 1682 9.220767 CTTATACTTCAAGTCTATTAATGGGGC 57.779 37.037 0.00 0.00 0.00 5.80
1684 1733 3.582208 AGGCCCATTTCTGTTATGCAAAA 59.418 39.130 0.00 0.00 0.00 2.44
1855 1909 6.884187 TGCTGACGAACTTTTAACTAATCAC 58.116 36.000 0.00 0.00 0.00 3.06
1994 2049 7.339466 ACAACCTTTCAATATCCAACATACCTC 59.661 37.037 0.00 0.00 0.00 3.85
2098 2345 8.910666 CGTTTCATAGAAGCTGTAGATATTCAG 58.089 37.037 0.00 0.00 35.12 3.02
2173 2515 4.271049 CCGTAGGCACATGAGTTTCTTATG 59.729 45.833 0.00 1.03 46.14 1.90
2263 2614 1.914634 CACTCTGTACAGGCTTAGCG 58.085 55.000 22.48 3.17 0.00 4.26
2280 2631 2.830264 CGTTTAGCAACTGCCCGTA 58.170 52.632 0.00 0.00 43.38 4.02
2389 2741 4.574828 CCACCCATAATTGTTAGAGGTTCG 59.425 45.833 0.00 0.00 0.00 3.95
2663 3101 8.706322 ATGTAAGTTTGGATAACTCAAAAGGT 57.294 30.769 0.00 0.00 36.11 3.50
2863 3304 5.007921 GCAGATTTTTCTGGCAAATTGTTGT 59.992 36.000 5.24 0.00 38.14 3.32
2864 3305 6.652245 CAGATTTTTCTGGCAAATTGTTGTC 58.348 36.000 0.00 0.00 39.95 3.18
2912 3353 9.371136 CAACTTATACATGAGCTCAGTTTAGAA 57.629 33.333 22.96 13.99 0.00 2.10
2954 3402 4.160642 TGCTCCATACAGCAATGATCTT 57.839 40.909 0.00 0.00 46.65 2.40
3207 3657 3.568538 CAAATGTAAGGAAGTGTGCAGC 58.431 45.455 0.00 0.00 0.00 5.25
3454 3928 6.506500 AATAAACTTGCTGATCTGGTTGAG 57.493 37.500 1.46 0.00 0.00 3.02
3621 4135 4.538490 TCCTTTGCCTATCTTTGGACCTAA 59.462 41.667 0.00 0.00 0.00 2.69
3667 4181 1.522668 TTGGTTCTGAAGTGGATGCG 58.477 50.000 0.00 0.00 0.00 4.73
3703 4217 6.427547 GCAAATCAGAGATTGAGAAGATAGGG 59.572 42.308 3.45 0.00 39.68 3.53
3766 4286 4.766007 CACTATTCGTCTATGCATGTTGC 58.234 43.478 10.16 0.00 45.29 4.17
3783 4303 5.103290 TGTTGCCGTTTTGACTAGATTTC 57.897 39.130 0.00 0.00 0.00 2.17
3916 4529 2.422093 GGTCATGAAGGATCCCAAGTCC 60.422 54.545 8.55 1.08 35.94 3.85
4039 4652 1.737363 GCTCCAGAACCTCGTGATGTC 60.737 57.143 0.00 0.00 0.00 3.06
4238 4851 9.701098 AATCGTAAGTCTACTTTCACAATGTTA 57.299 29.630 0.00 0.00 37.40 2.41
4277 4890 2.503765 TGGCGTCTCCATAGATTTTCCA 59.496 45.455 0.00 0.00 40.72 3.53
4340 5012 8.932610 AGATGTCATATATATTGATGTCCTCCC 58.067 37.037 0.00 0.00 0.00 4.30
4649 5324 7.408756 ACAGACACATTTACCAATTATGCAT 57.591 32.000 3.79 3.79 0.00 3.96
4681 5356 8.979574 GTAAGAGGTGTATAAATAGCACATCAC 58.020 37.037 10.39 0.00 43.60 3.06
4682 5357 6.525629 AGAGGTGTATAAATAGCACATCACC 58.474 40.000 10.39 0.00 43.60 4.02
4730 5405 5.693961 TCATATGTGGTTGGTCTATTGCAT 58.306 37.500 1.90 0.00 0.00 3.96
4738 5413 6.472163 GTGGTTGGTCTATTGCATTTTTATCG 59.528 38.462 0.00 0.00 0.00 2.92
4757 5432 8.514330 TTTATCGTATTTTTCCTAAGCATGGT 57.486 30.769 0.00 0.00 0.00 3.55
4761 5436 6.027749 CGTATTTTTCCTAAGCATGGTGTTC 58.972 40.000 0.00 0.00 0.00 3.18
4806 5483 7.758820 TTTACTTCACCTTAATATGGGAGGA 57.241 36.000 6.35 0.00 34.61 3.71
4807 5484 5.632034 ACTTCACCTTAATATGGGAGGAC 57.368 43.478 6.35 0.00 34.61 3.85
4873 5766 4.541705 TGGAAGAAAAATGTCCACCTTCA 58.458 39.130 0.00 0.00 36.51 3.02
4874 5767 4.584325 TGGAAGAAAAATGTCCACCTTCAG 59.416 41.667 0.00 0.00 36.51 3.02
4876 5769 4.453480 AGAAAAATGTCCACCTTCAGGA 57.547 40.909 0.00 0.00 38.94 3.86
4919 5867 7.571080 TTTAGTTACAGTTTGTTAACCCTGG 57.429 36.000 16.62 0.00 34.71 4.45
4941 5891 3.625313 GCTGGCCTATCTTCTTTGACTTC 59.375 47.826 3.32 0.00 0.00 3.01
5067 6194 9.504708 TTGAAATTGGCAAAGAAATTATGTCAT 57.495 25.926 3.01 0.00 0.00 3.06
5068 6195 8.937884 TGAAATTGGCAAAGAAATTATGTCATG 58.062 29.630 3.01 0.00 0.00 3.07
5069 6196 7.852971 AATTGGCAAAGAAATTATGTCATGG 57.147 32.000 3.01 0.00 0.00 3.66
5070 6197 6.602410 TTGGCAAAGAAATTATGTCATGGA 57.398 33.333 0.00 0.00 0.00 3.41
5071 6198 5.964758 TGGCAAAGAAATTATGTCATGGAC 58.035 37.500 0.00 0.00 0.00 4.02
5072 6199 5.716228 TGGCAAAGAAATTATGTCATGGACT 59.284 36.000 0.00 0.00 33.15 3.85
5121 6286 0.107993 TGTGCTAGGTGCTGCTGATC 60.108 55.000 0.00 0.00 43.37 2.92
5155 6320 4.405116 ACAGACTGGTTAACGTTGGTAA 57.595 40.909 11.99 0.00 0.00 2.85
5262 6452 5.690464 ATCTCCAGTGAGTCTAAATTGCT 57.310 39.130 0.00 0.00 39.75 3.91
5264 6454 5.869579 TCTCCAGTGAGTCTAAATTGCTTT 58.130 37.500 0.00 0.00 39.75 3.51
5392 6582 9.252962 GAAATATTGAGAATAAGGGCATTTGTG 57.747 33.333 0.00 0.00 0.00 3.33
5603 6793 0.542467 TGTCTACCGCCACCAGGTAA 60.542 55.000 0.00 0.00 42.97 2.85
5604 6794 0.175073 GTCTACCGCCACCAGGTAAG 59.825 60.000 0.00 0.00 42.97 2.34
5605 6795 0.251922 TCTACCGCCACCAGGTAAGT 60.252 55.000 0.00 0.00 42.97 2.24
5606 6796 1.005805 TCTACCGCCACCAGGTAAGTA 59.994 52.381 0.00 0.00 42.97 2.24
5669 6861 5.062683 CGATGATGGTCGAATATGATGAACC 59.937 44.000 0.00 0.00 44.06 3.62
5670 6862 5.551305 TGATGGTCGAATATGATGAACCT 57.449 39.130 0.00 0.00 0.00 3.50
5671 6863 5.541845 TGATGGTCGAATATGATGAACCTC 58.458 41.667 0.00 0.00 0.00 3.85
5672 6864 4.336889 TGGTCGAATATGATGAACCTCC 57.663 45.455 0.00 0.00 0.00 4.30
5673 6865 3.243737 TGGTCGAATATGATGAACCTCCG 60.244 47.826 0.00 0.00 0.00 4.63
5674 6866 3.005472 GGTCGAATATGATGAACCTCCGA 59.995 47.826 0.00 0.00 0.00 4.55
5675 6867 4.500887 GGTCGAATATGATGAACCTCCGAA 60.501 45.833 0.00 0.00 0.00 4.30
5676 6868 5.230942 GTCGAATATGATGAACCTCCGAAT 58.769 41.667 0.00 0.00 0.00 3.34
5677 6869 5.119279 GTCGAATATGATGAACCTCCGAATG 59.881 44.000 0.00 0.00 0.00 2.67
5678 6870 5.010617 TCGAATATGATGAACCTCCGAATGA 59.989 40.000 0.00 0.00 0.00 2.57
5679 6871 5.696270 CGAATATGATGAACCTCCGAATGAA 59.304 40.000 0.00 0.00 0.00 2.57
5680 6872 6.346919 CGAATATGATGAACCTCCGAATGAAC 60.347 42.308 0.00 0.00 0.00 3.18
5681 6873 3.981071 TGATGAACCTCCGAATGAACT 57.019 42.857 0.00 0.00 0.00 3.01
5691 6883 3.525537 TCCGAATGAACTCTCTGAATGC 58.474 45.455 0.00 0.00 0.00 3.56
5704 6896 5.819991 TCTCTGAATGCTTGGTTTCCTTAT 58.180 37.500 0.00 0.00 0.00 1.73
5705 6897 5.882557 TCTCTGAATGCTTGGTTTCCTTATC 59.117 40.000 0.00 0.00 0.00 1.75
5706 6898 5.569355 TCTGAATGCTTGGTTTCCTTATCA 58.431 37.500 0.00 0.00 0.00 2.15
5748 6940 9.904198 TTTCAGATCATAAATGTCTACCATCAA 57.096 29.630 0.00 0.00 31.75 2.57
5889 7081 1.618837 CCAGTTCTCCTCGTTCTTCCA 59.381 52.381 0.00 0.00 0.00 3.53
5934 7126 2.663520 TGCACGCACCGGTACAAG 60.664 61.111 6.87 0.91 0.00 3.16
5991 7183 1.405821 ACACCTAATCTCTCTTCGCCG 59.594 52.381 0.00 0.00 0.00 6.46
5999 7191 0.179134 CTCTCTTCGCCGTCGGATTT 60.179 55.000 17.49 0.00 36.13 2.17
6000 7192 0.245539 TCTCTTCGCCGTCGGATTTT 59.754 50.000 17.49 0.00 36.13 1.82
6026 7218 1.376037 CCTTGTCCTCTTCGGTGCC 60.376 63.158 0.00 0.00 0.00 5.01
6044 7236 1.203523 GCCGAGAGTCTGAAGATGTGT 59.796 52.381 0.00 0.00 0.00 3.72
6146 7338 2.280552 GGACTCGTACCTGCACCCA 61.281 63.158 0.00 0.00 0.00 4.51
6194 7386 4.415150 TACGTCGCCGAGGACCCT 62.415 66.667 14.36 0.00 37.88 4.34
6212 7404 4.162690 GGCGCGGAGGAGGTGATT 62.163 66.667 8.83 0.00 0.00 2.57
6215 7407 1.813859 CGCGGAGGAGGTGATTGTA 59.186 57.895 0.00 0.00 0.00 2.41
6328 7520 4.410743 GCACTTGCTCTTGCCGGC 62.411 66.667 22.73 22.73 38.71 6.13
6329 7521 2.979676 CACTTGCTCTTGCCGGCA 60.980 61.111 29.03 29.03 38.71 5.69
6330 7522 2.203337 ACTTGCTCTTGCCGGCAA 60.203 55.556 37.78 37.78 44.64 4.52
6358 7550 4.100084 CGCCATGGGAGGAGTGCA 62.100 66.667 15.13 0.00 0.00 4.57
6400 7592 2.817258 AGTGTGTACAGAGAGAGACAGC 59.183 50.000 0.00 0.00 0.00 4.40
6403 7595 2.095213 GTGTACAGAGAGAGACAGCGAG 59.905 54.545 0.00 0.00 0.00 5.03
6432 7624 2.842457 TGGAATTCTGCTCGATGATGG 58.158 47.619 5.23 0.00 0.00 3.51
6433 7625 2.435437 TGGAATTCTGCTCGATGATGGA 59.565 45.455 5.23 0.00 0.00 3.41
6434 7626 3.072038 TGGAATTCTGCTCGATGATGGAT 59.928 43.478 5.23 0.00 0.00 3.41
6435 7627 3.436015 GGAATTCTGCTCGATGATGGATG 59.564 47.826 5.23 0.00 0.00 3.51
6461 7653 4.740822 ACGGCTGGGGATGTTGGC 62.741 66.667 0.00 0.00 0.00 4.52
6468 7660 1.607467 GGGGATGTTGGCTGCACTT 60.607 57.895 0.50 0.00 0.00 3.16
6469 7661 1.588082 GGGATGTTGGCTGCACTTG 59.412 57.895 0.50 0.00 0.00 3.16
6470 7662 1.080298 GGATGTTGGCTGCACTTGC 60.080 57.895 0.50 0.00 42.50 4.01
6471 7663 1.530013 GGATGTTGGCTGCACTTGCT 61.530 55.000 0.50 0.00 42.66 3.91
6520 7712 3.315191 CCAGTACACCTGTTTTTCCACTG 59.685 47.826 0.00 0.00 39.74 3.66
6633 7828 2.437651 TGTGACCAGTTTCATCTGTCCA 59.562 45.455 0.00 0.00 34.02 4.02
6634 7829 3.072915 TGTGACCAGTTTCATCTGTCCAT 59.927 43.478 0.00 0.00 34.02 3.41
6635 7830 3.438087 GTGACCAGTTTCATCTGTCCATG 59.562 47.826 0.00 0.00 34.02 3.66
6636 7831 3.072915 TGACCAGTTTCATCTGTCCATGT 59.927 43.478 0.00 0.00 34.02 3.21
6637 7832 3.679389 ACCAGTTTCATCTGTCCATGTC 58.321 45.455 0.00 0.00 34.02 3.06
6638 7833 3.012518 CCAGTTTCATCTGTCCATGTCC 58.987 50.000 0.00 0.00 34.02 4.02
6639 7834 2.674852 CAGTTTCATCTGTCCATGTCCG 59.325 50.000 0.00 0.00 0.00 4.79
6640 7835 2.009774 GTTTCATCTGTCCATGTCCGG 58.990 52.381 0.00 0.00 0.00 5.14
6641 7836 1.275666 TTCATCTGTCCATGTCCGGT 58.724 50.000 0.00 0.00 0.00 5.28
6642 7837 0.536724 TCATCTGTCCATGTCCGGTG 59.463 55.000 0.00 0.00 0.00 4.94
6643 7838 0.250234 CATCTGTCCATGTCCGGTGT 59.750 55.000 0.00 0.00 0.00 4.16
6644 7839 1.480545 CATCTGTCCATGTCCGGTGTA 59.519 52.381 0.00 0.00 0.00 2.90
6645 7840 0.892755 TCTGTCCATGTCCGGTGTAC 59.107 55.000 0.00 0.00 0.00 2.90
6646 7841 0.895530 CTGTCCATGTCCGGTGTACT 59.104 55.000 0.00 0.00 0.00 2.73
6647 7842 0.606096 TGTCCATGTCCGGTGTACTG 59.394 55.000 0.00 0.00 0.00 2.74
6648 7843 0.892755 GTCCATGTCCGGTGTACTGA 59.107 55.000 0.00 0.00 0.00 3.41
6649 7844 1.480954 GTCCATGTCCGGTGTACTGAT 59.519 52.381 0.00 0.00 0.00 2.90
6650 7845 2.093658 GTCCATGTCCGGTGTACTGATT 60.094 50.000 0.00 0.00 0.00 2.57
6657 7852 6.045072 TGTCCGGTGTACTGATTAGAATTT 57.955 37.500 0.00 0.00 0.00 1.82
6760 7996 4.121317 CTCCAGAGATGCAAGATCAAGAC 58.879 47.826 0.00 0.00 0.00 3.01
6761 7997 3.773667 TCCAGAGATGCAAGATCAAGACT 59.226 43.478 0.00 0.00 0.00 3.24
6817 8053 1.686587 ACGCATGGTCATCGAATAGGA 59.313 47.619 0.00 0.00 0.00 2.94
6826 8062 5.157781 GGTCATCGAATAGGAAATCTCTCG 58.842 45.833 0.00 0.00 34.27 4.04
6843 8079 4.036852 TCTCTCGTATGACCATAGTTGCAG 59.963 45.833 0.00 0.00 0.00 4.41
6852 8088 1.200716 CCATAGTTGCAGCAACAGTGG 59.799 52.381 34.38 32.59 45.66 4.00
6854 8090 1.593196 TAGTTGCAGCAACAGTGGAC 58.407 50.000 34.38 11.69 45.66 4.02
6873 8110 3.056322 GGACATCCAAGCAAGCTGATTTT 60.056 43.478 0.00 0.00 35.64 1.82
6896 8133 0.383949 TTTTGCCTTCCGAGTGCAAC 59.616 50.000 6.24 0.00 44.02 4.17
6923 8160 3.434299 GCAAAAGCCTTTGTACGTAGCTA 59.566 43.478 9.45 0.00 43.34 3.32
6951 8188 1.549170 GGCAGAACCGAAACTCCTCTA 59.451 52.381 0.00 0.00 0.00 2.43
6964 8201 0.629596 TCCTCTACACGATGTCCCCT 59.370 55.000 0.00 0.00 0.00 4.79
6965 8202 1.848388 TCCTCTACACGATGTCCCCTA 59.152 52.381 0.00 0.00 0.00 3.53
6966 8203 2.158652 TCCTCTACACGATGTCCCCTAG 60.159 54.545 0.00 0.00 0.00 3.02
6967 8204 1.609555 CTCTACACGATGTCCCCTAGC 59.390 57.143 0.00 0.00 0.00 3.42
6968 8205 1.214673 TCTACACGATGTCCCCTAGCT 59.785 52.381 0.00 0.00 0.00 3.32
7005 8242 1.335964 GCTATCTCTCGCGCAATACCA 60.336 52.381 8.75 0.00 0.00 3.25
7022 8259 0.742505 CCAATGAAGCGTGCATGGAT 59.257 50.000 8.27 0.00 0.00 3.41
7035 8272 2.504996 TGCATGGATAGTGGTCACATGA 59.495 45.455 0.00 0.00 40.92 3.07
7050 8287 4.393062 GTCACATGATTCTCCGTGAACATT 59.607 41.667 0.00 0.00 39.90 2.71
7062 8299 3.058016 CCGTGAACATTGTCTTGCTGAAT 60.058 43.478 0.00 0.00 0.00 2.57
7109 8346 1.579698 CGATCAATCTGTGGCTCTGG 58.420 55.000 0.00 0.00 0.00 3.86
7116 8353 1.002868 CTGTGGCTCTGGGAACTGG 60.003 63.158 0.00 0.00 0.00 4.00
7188 8426 9.297586 TGTATCAACTAGCTAGTAATGAAAACG 57.702 33.333 26.29 7.20 34.99 3.60
7220 8458 3.189495 CGATATGTGGAGTGTAGCGAGAT 59.811 47.826 0.00 0.00 29.56 2.75
7282 8520 1.038130 AGGATCCTCGTCCAAGTCCG 61.038 60.000 9.02 0.00 40.90 4.79
7291 8529 2.509336 CCAAGTCCGTAGCAGCCG 60.509 66.667 0.00 0.00 0.00 5.52
7292 8530 2.509336 CAAGTCCGTAGCAGCCGG 60.509 66.667 0.00 0.00 46.83 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.423154 CGCGGAAGTCAACCCAGC 61.423 66.667 0.00 0.00 0.00 4.85
1 2 3.423154 GCGCGGAAGTCAACCCAG 61.423 66.667 8.83 0.00 0.00 4.45
2 3 4.243008 TGCGCGGAAGTCAACCCA 62.243 61.111 8.83 0.00 0.00 4.51
3 4 3.423154 CTGCGCGGAAGTCAACCC 61.423 66.667 11.90 0.00 0.00 4.11
4 5 4.090057 GCTGCGCGGAAGTCAACC 62.090 66.667 23.20 0.00 0.00 3.77
5 6 2.387125 TTTGCTGCGCGGAAGTCAAC 62.387 55.000 23.20 0.00 0.00 3.18
6 7 1.514678 ATTTGCTGCGCGGAAGTCAA 61.515 50.000 23.20 11.82 0.00 3.18
7 8 1.514678 AATTTGCTGCGCGGAAGTCA 61.515 50.000 23.20 5.10 0.00 3.41
8 9 0.387239 AAATTTGCTGCGCGGAAGTC 60.387 50.000 23.20 1.86 0.00 3.01
9 10 0.664166 CAAATTTGCTGCGCGGAAGT 60.664 50.000 23.20 8.05 0.00 3.01
10 11 1.346378 CCAAATTTGCTGCGCGGAAG 61.346 55.000 23.20 4.25 0.00 3.46
11 12 1.372748 CCAAATTTGCTGCGCGGAA 60.373 52.632 23.20 6.61 0.00 4.30
12 13 2.198906 CTCCAAATTTGCTGCGCGGA 62.199 55.000 23.20 3.19 0.00 5.54
13 14 1.802715 CTCCAAATTTGCTGCGCGG 60.803 57.895 13.18 13.18 0.00 6.46
14 15 1.802715 CCTCCAAATTTGCTGCGCG 60.803 57.895 12.92 0.00 0.00 6.86
15 16 0.733909 GACCTCCAAATTTGCTGCGC 60.734 55.000 12.92 0.00 0.00 6.09
16 17 0.454957 CGACCTCCAAATTTGCTGCG 60.455 55.000 12.92 7.53 0.00 5.18
17 18 0.109132 CCGACCTCCAAATTTGCTGC 60.109 55.000 12.92 0.00 0.00 5.25
18 19 0.109132 GCCGACCTCCAAATTTGCTG 60.109 55.000 12.92 7.10 0.00 4.41
19 20 1.586154 CGCCGACCTCCAAATTTGCT 61.586 55.000 12.92 0.00 0.00 3.91
20 21 1.154035 CGCCGACCTCCAAATTTGC 60.154 57.895 12.92 0.00 0.00 3.68
21 22 1.444836 TACGCCGACCTCCAAATTTG 58.555 50.000 11.40 11.40 0.00 2.32
22 23 2.285977 GATACGCCGACCTCCAAATTT 58.714 47.619 0.00 0.00 0.00 1.82
23 24 1.208535 TGATACGCCGACCTCCAAATT 59.791 47.619 0.00 0.00 0.00 1.82
24 25 0.828022 TGATACGCCGACCTCCAAAT 59.172 50.000 0.00 0.00 0.00 2.32
25 26 0.828022 ATGATACGCCGACCTCCAAA 59.172 50.000 0.00 0.00 0.00 3.28
26 27 0.387929 GATGATACGCCGACCTCCAA 59.612 55.000 0.00 0.00 0.00 3.53
27 28 0.753848 TGATGATACGCCGACCTCCA 60.754 55.000 0.00 0.00 0.00 3.86
28 29 0.387929 TTGATGATACGCCGACCTCC 59.612 55.000 0.00 0.00 0.00 4.30
29 30 2.440539 ATTGATGATACGCCGACCTC 57.559 50.000 0.00 0.00 0.00 3.85
30 31 2.910688 AATTGATGATACGCCGACCT 57.089 45.000 0.00 0.00 0.00 3.85
31 32 2.223377 GGAAATTGATGATACGCCGACC 59.777 50.000 0.00 0.00 0.00 4.79
32 33 3.131396 AGGAAATTGATGATACGCCGAC 58.869 45.455 0.00 0.00 0.00 4.79
33 34 3.181470 TGAGGAAATTGATGATACGCCGA 60.181 43.478 0.00 0.00 0.00 5.54
34 35 3.130633 TGAGGAAATTGATGATACGCCG 58.869 45.455 0.00 0.00 0.00 6.46
35 36 4.154918 GGATGAGGAAATTGATGATACGCC 59.845 45.833 0.00 0.00 0.00 5.68
36 37 4.999950 AGGATGAGGAAATTGATGATACGC 59.000 41.667 0.00 0.00 0.00 4.42
37 38 5.994054 ACAGGATGAGGAAATTGATGATACG 59.006 40.000 0.00 0.00 39.69 3.06
38 39 6.429385 GGACAGGATGAGGAAATTGATGATAC 59.571 42.308 0.00 0.00 39.69 2.24
39 40 6.537355 GGACAGGATGAGGAAATTGATGATA 58.463 40.000 0.00 0.00 39.69 2.15
40 41 5.383476 GGACAGGATGAGGAAATTGATGAT 58.617 41.667 0.00 0.00 39.69 2.45
41 42 4.684214 CGGACAGGATGAGGAAATTGATGA 60.684 45.833 0.00 0.00 39.69 2.92
42 43 3.562973 CGGACAGGATGAGGAAATTGATG 59.437 47.826 0.00 0.00 39.69 3.07
43 44 3.813443 CGGACAGGATGAGGAAATTGAT 58.187 45.455 0.00 0.00 39.69 2.57
44 45 2.680805 GCGGACAGGATGAGGAAATTGA 60.681 50.000 0.00 0.00 39.69 2.57
45 46 1.672881 GCGGACAGGATGAGGAAATTG 59.327 52.381 0.00 0.00 39.69 2.32
46 47 1.281867 TGCGGACAGGATGAGGAAATT 59.718 47.619 0.00 0.00 39.69 1.82
47 48 0.911769 TGCGGACAGGATGAGGAAAT 59.088 50.000 0.00 0.00 39.69 2.17
48 49 0.911769 ATGCGGACAGGATGAGGAAA 59.088 50.000 0.00 0.00 39.69 3.13
49 50 0.911769 AATGCGGACAGGATGAGGAA 59.088 50.000 0.00 0.00 39.69 3.36
50 51 0.178767 CAATGCGGACAGGATGAGGA 59.821 55.000 0.00 0.00 39.69 3.71
51 52 0.107508 ACAATGCGGACAGGATGAGG 60.108 55.000 0.00 0.00 39.69 3.86
52 53 1.399440 CAACAATGCGGACAGGATGAG 59.601 52.381 0.00 0.00 39.69 2.90
53 54 1.452110 CAACAATGCGGACAGGATGA 58.548 50.000 0.00 0.00 39.69 2.92
54 55 0.452987 CCAACAATGCGGACAGGATG 59.547 55.000 0.00 0.00 46.00 3.51
55 56 0.327924 TCCAACAATGCGGACAGGAT 59.672 50.000 0.00 0.00 0.00 3.24
56 57 0.109532 TTCCAACAATGCGGACAGGA 59.890 50.000 0.00 0.00 0.00 3.86
57 58 0.240945 GTTCCAACAATGCGGACAGG 59.759 55.000 0.00 0.00 0.00 4.00
58 59 1.197721 GAGTTCCAACAATGCGGACAG 59.802 52.381 0.00 0.00 0.00 3.51
59 60 1.234821 GAGTTCCAACAATGCGGACA 58.765 50.000 0.00 0.00 0.00 4.02
60 61 0.165944 CGAGTTCCAACAATGCGGAC 59.834 55.000 0.00 0.00 0.00 4.79
61 62 0.953471 CCGAGTTCCAACAATGCGGA 60.953 55.000 0.00 0.00 39.62 5.54
62 63 0.953471 TCCGAGTTCCAACAATGCGG 60.953 55.000 0.00 0.00 38.68 5.69
63 64 0.871722 TTCCGAGTTCCAACAATGCG 59.128 50.000 0.00 0.00 0.00 4.73
64 65 1.401539 GCTTCCGAGTTCCAACAATGC 60.402 52.381 0.00 0.00 0.00 3.56
65 66 1.879380 TGCTTCCGAGTTCCAACAATG 59.121 47.619 0.00 0.00 0.00 2.82
66 67 2.154462 CTGCTTCCGAGTTCCAACAAT 58.846 47.619 0.00 0.00 0.00 2.71
67 68 1.140052 TCTGCTTCCGAGTTCCAACAA 59.860 47.619 0.00 0.00 0.00 2.83
68 69 0.756294 TCTGCTTCCGAGTTCCAACA 59.244 50.000 0.00 0.00 0.00 3.33
69 70 1.433534 CTCTGCTTCCGAGTTCCAAC 58.566 55.000 0.00 0.00 0.00 3.77
70 71 0.321671 CCTCTGCTTCCGAGTTCCAA 59.678 55.000 0.00 0.00 0.00 3.53
71 72 0.541998 TCCTCTGCTTCCGAGTTCCA 60.542 55.000 0.00 0.00 0.00 3.53
72 73 0.174617 CTCCTCTGCTTCCGAGTTCC 59.825 60.000 0.00 0.00 0.00 3.62
73 74 0.459411 GCTCCTCTGCTTCCGAGTTC 60.459 60.000 0.00 0.00 0.00 3.01
74 75 1.594310 GCTCCTCTGCTTCCGAGTT 59.406 57.895 0.00 0.00 0.00 3.01
75 76 2.355193 GGCTCCTCTGCTTCCGAGT 61.355 63.158 0.00 0.00 0.00 4.18
76 77 1.892819 TTGGCTCCTCTGCTTCCGAG 61.893 60.000 0.00 0.00 0.00 4.63
77 78 1.480212 TTTGGCTCCTCTGCTTCCGA 61.480 55.000 0.00 0.00 0.00 4.55
78 79 0.606401 TTTTGGCTCCTCTGCTTCCG 60.606 55.000 0.00 0.00 0.00 4.30
79 80 1.844687 ATTTTGGCTCCTCTGCTTCC 58.155 50.000 0.00 0.00 0.00 3.46
80 81 5.588958 ATTTATTTTGGCTCCTCTGCTTC 57.411 39.130 0.00 0.00 0.00 3.86
81 82 5.066505 CGTATTTATTTTGGCTCCTCTGCTT 59.933 40.000 0.00 0.00 0.00 3.91
82 83 4.576463 CGTATTTATTTTGGCTCCTCTGCT 59.424 41.667 0.00 0.00 0.00 4.24
83 84 4.335594 ACGTATTTATTTTGGCTCCTCTGC 59.664 41.667 0.00 0.00 0.00 4.26
84 85 6.436843 AACGTATTTATTTTGGCTCCTCTG 57.563 37.500 0.00 0.00 0.00 3.35
85 86 7.462571 AAAACGTATTTATTTTGGCTCCTCT 57.537 32.000 0.00 0.00 0.00 3.69
117 118 9.834628 TTTCGCGAACAGAAAGATAATAAAAAT 57.165 25.926 23.33 0.00 33.23 1.82
126 127 4.142816 CCAAGATTTCGCGAACAGAAAGAT 60.143 41.667 23.33 10.55 40.39 2.40
129 130 2.350388 GCCAAGATTTCGCGAACAGAAA 60.350 45.455 23.33 6.87 41.17 2.52
132 133 0.798776 AGCCAAGATTTCGCGAACAG 59.201 50.000 23.33 9.43 0.00 3.16
134 135 0.794605 GCAGCCAAGATTTCGCGAAC 60.795 55.000 23.33 11.49 0.00 3.95
138 139 0.522076 CTTCGCAGCCAAGATTTCGC 60.522 55.000 0.00 0.00 0.00 4.70
197 198 4.659172 ATGGTGGTGGTGGCGGTG 62.659 66.667 0.00 0.00 0.00 4.94
199 200 3.567579 AAGATGGTGGTGGTGGCGG 62.568 63.158 0.00 0.00 0.00 6.13
200 201 2.034066 AAGATGGTGGTGGTGGCG 59.966 61.111 0.00 0.00 0.00 5.69
201 202 1.678970 GGAAGATGGTGGTGGTGGC 60.679 63.158 0.00 0.00 0.00 5.01
229 230 5.473504 TCCTGTTTCTGTCTAGATTTTTGGC 59.526 40.000 0.00 0.00 31.81 4.52
230 231 6.486657 TGTCCTGTTTCTGTCTAGATTTTTGG 59.513 38.462 0.00 0.00 31.81 3.28
232 233 8.519799 TTTGTCCTGTTTCTGTCTAGATTTTT 57.480 30.769 0.00 0.00 31.81 1.94
264 268 0.596577 GCAACTCCGGGGAAAAAGAC 59.403 55.000 9.33 0.00 0.00 3.01
355 359 7.650504 GCGGAAAAGTTGGGGTATTATTATTTC 59.349 37.037 0.00 0.00 0.00 2.17
367 371 2.650778 GCAGCGGAAAAGTTGGGG 59.349 61.111 0.00 0.00 0.00 4.96
368 372 2.650778 GGCAGCGGAAAAGTTGGG 59.349 61.111 0.00 0.00 0.00 4.12
420 427 0.966370 CGAGAGAGAGGGTTTCGGGT 60.966 60.000 0.00 0.00 0.00 5.28
427 434 1.316706 CGGAAAGCGAGAGAGAGGGT 61.317 60.000 0.00 0.00 0.00 4.34
428 435 1.435515 CGGAAAGCGAGAGAGAGGG 59.564 63.158 0.00 0.00 0.00 4.30
429 436 1.435515 CCGGAAAGCGAGAGAGAGG 59.564 63.158 0.00 0.00 0.00 3.69
430 437 1.435515 CCCGGAAAGCGAGAGAGAG 59.564 63.158 0.73 0.00 0.00 3.20
431 438 2.052690 CCCCGGAAAGCGAGAGAGA 61.053 63.158 0.73 0.00 0.00 3.10
433 440 2.283676 ACCCCGGAAAGCGAGAGA 60.284 61.111 0.73 0.00 0.00 3.10
508 515 7.437267 GTGAATTAAATCAAAGCTGATGGATGG 59.563 37.037 0.00 0.00 41.66 3.51
509 516 7.977293 TGTGAATTAAATCAAAGCTGATGGATG 59.023 33.333 0.00 0.00 41.66 3.51
510 517 7.977853 GTGTGAATTAAATCAAAGCTGATGGAT 59.022 33.333 0.00 0.00 41.66 3.41
511 518 7.315142 GTGTGAATTAAATCAAAGCTGATGGA 58.685 34.615 0.00 0.00 41.66 3.41
512 519 6.252015 CGTGTGAATTAAATCAAAGCTGATGG 59.748 38.462 0.00 0.00 41.66 3.51
513 520 6.237384 GCGTGTGAATTAAATCAAAGCTGATG 60.237 38.462 0.00 0.00 41.66 3.07
514 521 5.801947 GCGTGTGAATTAAATCAAAGCTGAT 59.198 36.000 0.00 0.00 44.54 2.90
515 522 5.153513 GCGTGTGAATTAAATCAAAGCTGA 58.846 37.500 0.00 0.00 35.56 4.26
516 523 4.324402 GGCGTGTGAATTAAATCAAAGCTG 59.676 41.667 12.70 0.00 0.00 4.24
654 669 0.536260 AAGCAAAAGCACAAGTGGCA 59.464 45.000 2.00 0.00 0.00 4.92
655 670 0.932399 CAAGCAAAAGCACAAGTGGC 59.068 50.000 2.00 0.00 0.00 5.01
724 739 3.361158 CGACAAATGCCGGCCACA 61.361 61.111 26.77 5.45 0.00 4.17
786 801 0.679505 TACATCTACATCGCCCTGGC 59.320 55.000 0.00 0.00 37.85 4.85
788 803 3.123804 GTTGTACATCTACATCGCCCTG 58.876 50.000 0.00 0.00 32.70 4.45
790 805 3.454371 AGTTGTACATCTACATCGCCC 57.546 47.619 4.59 0.00 32.70 6.13
793 810 8.746751 CACTGATTTAGTTGTACATCTACATCG 58.253 37.037 22.93 20.36 37.60 3.84
820 837 5.572511 CCACAAATGTATGAAACCGATTGTG 59.427 40.000 8.01 8.01 40.70 3.33
854 884 7.437862 TGCCACTTGTGAATGAAAAGATAAAAC 59.562 33.333 1.89 0.00 0.00 2.43
855 885 7.495901 TGCCACTTGTGAATGAAAAGATAAAA 58.504 30.769 1.89 0.00 0.00 1.52
856 886 7.048629 TGCCACTTGTGAATGAAAAGATAAA 57.951 32.000 1.89 0.00 0.00 1.40
857 887 6.647334 TGCCACTTGTGAATGAAAAGATAA 57.353 33.333 1.89 0.00 0.00 1.75
858 888 6.433716 TGATGCCACTTGTGAATGAAAAGATA 59.566 34.615 1.89 0.00 0.00 1.98
903 933 1.872952 TGAAAGCAACCACACGATGAG 59.127 47.619 0.00 0.00 0.00 2.90
904 934 1.872952 CTGAAAGCAACCACACGATGA 59.127 47.619 0.00 0.00 0.00 2.92
911 941 5.008613 TGTTAGAATGACTGAAAGCAACCAC 59.991 40.000 0.00 0.00 37.60 4.16
918 948 7.492669 ACCGTATGATGTTAGAATGACTGAAAG 59.507 37.037 0.00 0.00 42.29 2.62
947 977 3.615536 GAACACGGCCTGCACATGC 62.616 63.158 0.00 0.00 42.50 4.06
975 1005 6.070251 TGGCTGTCCTTCAGATGACTTAATAA 60.070 38.462 0.00 0.00 46.27 1.40
978 1008 3.582647 TGGCTGTCCTTCAGATGACTTAA 59.417 43.478 0.00 0.00 46.27 1.85
979 1009 3.173151 TGGCTGTCCTTCAGATGACTTA 58.827 45.455 0.00 0.00 46.27 2.24
980 1010 1.980765 TGGCTGTCCTTCAGATGACTT 59.019 47.619 0.00 0.00 46.27 3.01
982 1012 2.286872 CATGGCTGTCCTTCAGATGAC 58.713 52.381 0.00 0.00 46.27 3.06
983 1013 1.211212 CCATGGCTGTCCTTCAGATGA 59.789 52.381 0.00 0.00 46.27 2.92
984 1014 1.676746 CCATGGCTGTCCTTCAGATG 58.323 55.000 0.00 0.00 46.27 2.90
1170 1201 3.389656 TCAGGTTGACATACTTGGTCACA 59.610 43.478 0.00 0.00 44.38 3.58
1311 1348 3.788766 GCTGCAGCAACGTACCCG 61.789 66.667 33.36 0.00 41.59 5.28
1341 1386 1.799258 AAGCGGTTGCAAAGAGCCAG 61.799 55.000 15.51 5.30 46.23 4.85
1345 1390 0.947244 AGACAAGCGGTTGCAAAGAG 59.053 50.000 26.22 2.05 46.23 2.85
1354 1399 4.911514 ATAAACAACAAAGACAAGCGGT 57.088 36.364 0.00 0.00 0.00 5.68
1360 1405 9.991388 GCGGTAATATAATAAACAACAAAGACA 57.009 29.630 0.00 0.00 0.00 3.41
1377 1422 1.202927 AGCTTGCATGGGCGGTAATAT 60.203 47.619 1.34 0.00 45.35 1.28
1379 1424 1.076777 AGCTTGCATGGGCGGTAAT 60.077 52.632 1.34 0.00 45.35 1.89
1380 1425 1.748879 GAGCTTGCATGGGCGGTAA 60.749 57.895 1.34 0.00 45.35 2.85
1381 1426 2.124736 GAGCTTGCATGGGCGGTA 60.125 61.111 1.34 0.00 45.35 4.02
1382 1427 3.574074 AAGAGCTTGCATGGGCGGT 62.574 57.895 1.34 0.00 45.35 5.68
1383 1428 1.880819 AAAAGAGCTTGCATGGGCGG 61.881 55.000 1.34 0.00 45.35 6.13
1384 1429 0.037975 AAAAAGAGCTTGCATGGGCG 60.038 50.000 1.34 0.00 45.35 6.13
1402 1447 5.669477 GGATTAGCAATGCCATGGTAAAAA 58.331 37.500 14.67 1.17 43.91 1.94
1403 1448 5.275067 GGATTAGCAATGCCATGGTAAAA 57.725 39.130 14.67 0.82 43.91 1.52
1404 1449 4.935352 GGATTAGCAATGCCATGGTAAA 57.065 40.909 14.67 0.00 43.91 2.01
1486 1534 6.825721 CAGGTTTATGCCTTAAAGAGACTGAT 59.174 38.462 0.00 0.00 36.58 2.90
1495 1543 4.040936 TGCTCCAGGTTTATGCCTTAAA 57.959 40.909 0.00 0.00 36.58 1.52
1545 1593 3.101437 ACATCATTCCCATGCAACATGT 58.899 40.909 6.80 0.00 0.00 3.21
1570 1618 5.048083 CAGAGCAGTAAAATTTGGCAACCTA 60.048 40.000 0.00 0.00 0.00 3.08
1712 1761 7.066887 TCCAAATACAGTGCTAAACCATATGTG 59.933 37.037 1.24 0.00 0.00 3.21
1855 1909 4.574013 GGGACAAATATCTTCAGTCTGCAG 59.426 45.833 7.63 7.63 0.00 4.41
1994 2049 2.995283 TGCTCACCTCTTTGATCCATG 58.005 47.619 0.00 0.00 0.00 3.66
2072 2318 8.803201 TGAATATCTACAGCTTCTATGAAACG 57.197 34.615 0.00 0.00 0.00 3.60
2098 2345 3.804193 GCAAGCCAGCGCCACTAC 61.804 66.667 2.29 0.00 34.57 2.73
2173 2515 6.759497 ATAAACACTAAGAATCCTGCAACC 57.241 37.500 0.00 0.00 0.00 3.77
2263 2614 3.629438 TTTTACGGGCAGTTGCTAAAC 57.371 42.857 3.88 0.00 41.70 2.01
2298 2650 5.551233 CAGAACAACTTCCTATGACTGGAA 58.449 41.667 0.00 0.00 40.85 3.53
2305 2657 5.947228 TTTGAGCAGAACAACTTCCTATG 57.053 39.130 0.00 0.00 0.00 2.23
2615 3053 5.263872 ACAACACCCTAAACATCCCAATA 57.736 39.130 0.00 0.00 0.00 1.90
2663 3101 0.397941 AACTTGCTAGTCTGCCAGCA 59.602 50.000 0.07 0.00 45.72 4.41
2680 3120 6.537660 GTGTGTAATCCTTATAGTCCCACAAC 59.462 42.308 0.00 0.00 32.73 3.32
2863 3304 4.261572 GCAGTCACAAAGGTGCTTTTATGA 60.262 41.667 0.00 0.00 44.87 2.15
2864 3305 3.983344 GCAGTCACAAAGGTGCTTTTATG 59.017 43.478 0.00 0.00 44.87 1.90
2867 3308 1.824230 TGCAGTCACAAAGGTGCTTTT 59.176 42.857 0.00 0.00 44.87 2.27
2937 3385 8.933807 CATTCTACTAAGATCATTGCTGTATGG 58.066 37.037 0.00 0.00 0.00 2.74
3183 3633 3.568007 TGCACACTTCCTTACATTTGGAC 59.432 43.478 0.00 0.00 31.24 4.02
3207 3657 3.627577 AGTACCCTGATAATTGCTTTGCG 59.372 43.478 0.00 0.00 0.00 4.85
3377 3850 8.388656 AGACATAAAAGATTAGTCCCCTACAA 57.611 34.615 0.00 0.00 0.00 2.41
3454 3928 5.574443 CCAATTCCGCATTTTCTTCTTCTTC 59.426 40.000 0.00 0.00 0.00 2.87
3621 4135 4.985538 TCCAAGAAAGCCAGTCTGTAATT 58.014 39.130 0.00 0.00 0.00 1.40
3744 4258 4.766007 GCAACATGCATAGACGAATAGTG 58.234 43.478 0.00 0.00 44.26 2.74
3766 4286 9.974750 GAAAGATTAGAAATCTAGTCAAAACGG 57.025 33.333 13.39 0.00 37.57 4.44
3860 4473 4.256110 TCAGCTTCCTGTGTATTGTCATG 58.744 43.478 0.00 0.00 40.09 3.07
3916 4529 1.479323 ACAAAGGCTGCTGGCATAATG 59.521 47.619 19.23 13.20 44.01 1.90
4039 4652 9.762381 AAGGGAATAGATAGATTACTCCAGTAG 57.238 37.037 0.00 0.00 0.00 2.57
4238 4851 2.878526 GCCACGAAACTGGGGAGTAATT 60.879 50.000 0.00 0.00 0.00 1.40
4277 4890 5.737860 TCACACTGATTCTACAGCAATGAT 58.262 37.500 0.00 0.00 41.06 2.45
4340 5012 4.361451 AATAGTTGGCAAGCAGAAATCG 57.639 40.909 0.00 0.00 0.00 3.34
4659 5334 6.787085 GGTGATGTGCTATTTATACACCTC 57.213 41.667 0.00 0.00 41.89 3.85
4681 5356 5.314923 ACATGTTGCAGCAAACTTATAGG 57.685 39.130 10.11 0.00 0.00 2.57
4682 5357 5.967674 GCTACATGTTGCAGCAAACTTATAG 59.032 40.000 24.46 9.41 36.77 1.31
4730 5405 9.796120 CCATGCTTAGGAAAAATACGATAAAAA 57.204 29.630 0.00 0.00 0.00 1.94
4738 5413 6.071616 TGGAACACCATGCTTAGGAAAAATAC 60.072 38.462 0.00 0.00 0.00 1.89
4757 5432 7.976414 AATATCATCCCAAGAAAATGGAACA 57.024 32.000 0.00 0.00 43.54 3.18
4770 5445 9.983024 TTAAGGTGAAGTAAAAATATCATCCCA 57.017 29.630 0.00 0.00 0.00 4.37
4806 5483 4.040952 ACACTGCTAAATCTGTTCAGGAGT 59.959 41.667 0.00 0.00 39.89 3.85
4807 5484 4.573900 ACACTGCTAAATCTGTTCAGGAG 58.426 43.478 0.00 0.00 33.19 3.69
4882 5830 7.049799 ACTGTAACTAAATGCAAAACCATGT 57.950 32.000 0.00 0.00 0.00 3.21
4883 5831 7.945033 AACTGTAACTAAATGCAAAACCATG 57.055 32.000 0.00 0.00 0.00 3.66
4898 5846 3.887110 GCCAGGGTTAACAAACTGTAACT 59.113 43.478 17.42 0.00 0.00 2.24
4919 5867 3.274095 AGTCAAAGAAGATAGGCCAGC 57.726 47.619 5.01 0.00 0.00 4.85
5062 6189 0.770499 TTCCAGCCAAGTCCATGACA 59.230 50.000 0.00 0.00 34.60 3.58
5067 6194 0.321564 CGATGTTCCAGCCAAGTCCA 60.322 55.000 0.00 0.00 0.00 4.02
5068 6195 1.648467 GCGATGTTCCAGCCAAGTCC 61.648 60.000 0.00 0.00 0.00 3.85
5069 6196 0.674895 AGCGATGTTCCAGCCAAGTC 60.675 55.000 0.00 0.00 0.00 3.01
5070 6197 0.957395 CAGCGATGTTCCAGCCAAGT 60.957 55.000 0.00 0.00 0.00 3.16
5071 6198 0.957395 ACAGCGATGTTCCAGCCAAG 60.957 55.000 0.00 0.00 0.00 3.61
5072 6199 0.323302 TACAGCGATGTTCCAGCCAA 59.677 50.000 13.34 0.00 0.00 4.52
5236 6425 5.799827 ATTTAGACTCACTGGAGATAGCC 57.200 43.478 0.00 0.00 44.26 3.93
5268 6458 3.084536 TGATCCTTGGTATGCTGCAAA 57.915 42.857 6.36 0.00 0.00 3.68
5269 6459 2.804986 TGATCCTTGGTATGCTGCAA 57.195 45.000 6.36 0.00 0.00 4.08
5392 6582 7.658261 AGAAAAAGTTTTTCAGGTGGTATAGC 58.342 34.615 32.23 10.43 0.00 2.97
5620 6811 3.751698 ACACCAAAAATCTCCGAAGTAGC 59.248 43.478 0.00 0.00 0.00 3.58
5628 6819 5.371115 TCATCGAAACACCAAAAATCTCC 57.629 39.130 0.00 0.00 0.00 3.71
5669 6861 3.555139 GCATTCAGAGAGTTCATTCGGAG 59.445 47.826 0.00 0.00 0.00 4.63
5670 6862 3.196469 AGCATTCAGAGAGTTCATTCGGA 59.804 43.478 0.00 0.00 0.00 4.55
5671 6863 3.529533 AGCATTCAGAGAGTTCATTCGG 58.470 45.455 0.00 0.00 0.00 4.30
5672 6864 4.201792 CCAAGCATTCAGAGAGTTCATTCG 60.202 45.833 0.00 0.00 0.00 3.34
5673 6865 4.699257 ACCAAGCATTCAGAGAGTTCATTC 59.301 41.667 0.00 0.00 0.00 2.67
5674 6866 4.660168 ACCAAGCATTCAGAGAGTTCATT 58.340 39.130 0.00 0.00 0.00 2.57
5675 6867 4.298103 ACCAAGCATTCAGAGAGTTCAT 57.702 40.909 0.00 0.00 0.00 2.57
5676 6868 3.777106 ACCAAGCATTCAGAGAGTTCA 57.223 42.857 0.00 0.00 0.00 3.18
5677 6869 4.083057 GGAAACCAAGCATTCAGAGAGTTC 60.083 45.833 0.00 0.00 0.00 3.01
5678 6870 3.823304 GGAAACCAAGCATTCAGAGAGTT 59.177 43.478 0.00 0.00 0.00 3.01
5679 6871 3.073650 AGGAAACCAAGCATTCAGAGAGT 59.926 43.478 0.00 0.00 0.00 3.24
5680 6872 3.683802 AGGAAACCAAGCATTCAGAGAG 58.316 45.455 0.00 0.00 0.00 3.20
5681 6873 3.795688 AGGAAACCAAGCATTCAGAGA 57.204 42.857 0.00 0.00 0.00 3.10
5691 6883 6.183347 AGGATCAAGTGATAAGGAAACCAAG 58.817 40.000 0.00 0.00 34.37 3.61
5704 6896 6.768483 TCTGAAACAATGTAGGATCAAGTGA 58.232 36.000 0.00 0.00 0.00 3.41
5705 6897 7.335171 TGATCTGAAACAATGTAGGATCAAGTG 59.665 37.037 13.62 0.00 36.31 3.16
5706 6898 7.397221 TGATCTGAAACAATGTAGGATCAAGT 58.603 34.615 13.62 0.00 36.31 3.16
5748 6940 3.066814 GCCCCACTCTCGTACCGT 61.067 66.667 0.00 0.00 0.00 4.83
5889 7081 8.257602 ACTTGTGGAACCAAAAGGTTAATATT 57.742 30.769 22.73 0.00 43.61 1.28
5934 7126 2.975799 TTCCTCACAAACGCGGGC 60.976 61.111 12.47 0.00 0.00 6.13
5991 7183 5.392057 GGACAAGGAGAAATCAAAATCCGAC 60.392 44.000 0.00 0.00 36.91 4.79
5999 7191 4.563580 CCGAAGAGGACAAGGAGAAATCAA 60.564 45.833 0.00 0.00 45.00 2.57
6000 7192 3.055819 CCGAAGAGGACAAGGAGAAATCA 60.056 47.826 0.00 0.00 45.00 2.57
6026 7218 4.149571 CACAAACACATCTTCAGACTCTCG 59.850 45.833 0.00 0.00 0.00 4.04
6044 7236 1.732917 CTCCTGCGCAAACCACAAA 59.267 52.632 13.05 0.00 0.00 2.83
6146 7338 0.660595 CGTCGTCGCTCTTGAACACT 60.661 55.000 0.00 0.00 0.00 3.55
6212 7404 3.932580 CTGCCGCTTGGTCGCTACA 62.933 63.158 0.00 0.00 34.16 2.74
6336 7528 2.844362 TCCTCCCATGGCGGCTAG 60.844 66.667 11.43 1.99 0.00 3.42
6337 7529 2.844362 CTCCTCCCATGGCGGCTA 60.844 66.667 11.43 0.00 0.00 3.93
6339 7531 4.864334 CACTCCTCCCATGGCGGC 62.864 72.222 6.09 0.00 0.00 6.53
6340 7532 4.864334 GCACTCCTCCCATGGCGG 62.864 72.222 6.09 9.18 0.00 6.13
6341 7533 2.043604 TATGCACTCCTCCCATGGCG 62.044 60.000 6.09 0.00 0.00 5.69
6358 7550 7.336931 CACACTAACAGCCTAAAGAACCAATAT 59.663 37.037 0.00 0.00 0.00 1.28
6424 7616 2.804527 GTGTGACATCCATCCATCATCG 59.195 50.000 0.00 0.00 0.00 3.84
6430 7622 1.078497 GCCGTGTGACATCCATCCA 60.078 57.895 0.00 0.00 0.00 3.41
6431 7623 1.091771 CAGCCGTGTGACATCCATCC 61.092 60.000 0.00 0.00 0.00 3.51
6432 7624 1.091771 CCAGCCGTGTGACATCCATC 61.092 60.000 0.00 0.00 0.00 3.51
6433 7625 1.078214 CCAGCCGTGTGACATCCAT 60.078 57.895 0.00 0.00 0.00 3.41
6434 7626 2.347114 CCAGCCGTGTGACATCCA 59.653 61.111 0.00 0.00 0.00 3.41
6435 7627 2.436646 CCCAGCCGTGTGACATCC 60.437 66.667 0.00 0.00 0.00 3.51
6476 7668 1.730547 GCCGTGTGCATTGCAAGTC 60.731 57.895 13.94 1.56 41.47 3.01
6520 7712 5.051816 TGGATCGTATTCGGTTCAAATACC 58.948 41.667 0.00 0.00 36.62 2.73
6584 7776 9.277783 ACTTCTCCAATTCACAATACTATATGC 57.722 33.333 0.00 0.00 0.00 3.14
6633 7828 5.871396 ATTCTAATCAGTACACCGGACAT 57.129 39.130 9.46 0.00 0.00 3.06
6634 7829 5.670792 AATTCTAATCAGTACACCGGACA 57.329 39.130 9.46 0.00 0.00 4.02
6635 7830 6.980051 AAAATTCTAATCAGTACACCGGAC 57.020 37.500 9.46 0.00 0.00 4.79
6636 7831 9.504708 TTTTAAAATTCTAATCAGTACACCGGA 57.495 29.630 9.46 0.00 0.00 5.14
6665 7860 5.942826 TGCACATTGACATTTGTCCACTATA 59.057 36.000 8.16 0.00 44.15 1.31
6694 7897 5.163184 TGAGCTAGGTCTGTAGCAGTAGTAT 60.163 44.000 21.80 0.00 46.81 2.12
6702 7907 1.679153 GGACTGAGCTAGGTCTGTAGC 59.321 57.143 27.73 18.63 45.06 3.58
6710 7915 5.923204 AGAATTATTGTGGACTGAGCTAGG 58.077 41.667 0.00 0.00 0.00 3.02
6807 8043 7.362229 GGTCATACGAGAGATTTCCTATTCGAT 60.362 40.741 0.00 0.00 36.30 3.59
6810 8046 6.982852 TGGTCATACGAGAGATTTCCTATTC 58.017 40.000 0.00 0.00 0.00 1.75
6817 8053 5.986135 GCAACTATGGTCATACGAGAGATTT 59.014 40.000 0.00 0.00 0.00 2.17
6826 8062 3.689161 TGTTGCTGCAACTATGGTCATAC 59.311 43.478 36.41 14.76 43.85 2.39
6852 8088 3.863142 AAATCAGCTTGCTTGGATGTC 57.137 42.857 0.00 0.00 0.00 3.06
6877 8114 2.800516 TTGCACTCGGAAGGCAAAA 58.199 47.368 12.01 0.00 43.82 2.44
6878 8115 4.569279 TTGCACTCGGAAGGCAAA 57.431 50.000 12.01 0.00 43.82 3.68
6879 8116 1.896660 GGTTGCACTCGGAAGGCAA 60.897 57.895 10.77 10.77 44.50 4.52
6880 8117 2.281484 GGTTGCACTCGGAAGGCA 60.281 61.111 0.00 0.00 35.41 4.75
6904 8141 4.532314 AGTAGCTACGTACAAAGGCTTT 57.468 40.909 17.99 6.68 34.88 3.51
6923 8160 2.876550 GTTTCGGTTCTGCCTTGTTAGT 59.123 45.455 0.00 0.00 34.25 2.24
6951 8188 1.693627 CTAGCTAGGGGACATCGTGT 58.306 55.000 13.32 0.00 0.00 4.49
6964 8201 0.389391 GATGCTCGTTGCCCTAGCTA 59.611 55.000 0.00 0.00 42.00 3.32
6965 8202 1.144936 GATGCTCGTTGCCCTAGCT 59.855 57.895 0.00 0.00 42.00 3.32
6966 8203 1.144936 AGATGCTCGTTGCCCTAGC 59.855 57.895 0.00 0.00 42.00 3.42
6967 8204 1.156645 GCAGATGCTCGTTGCCCTAG 61.157 60.000 0.00 0.00 42.00 3.02
6968 8205 1.153369 GCAGATGCTCGTTGCCCTA 60.153 57.895 0.00 0.00 42.00 3.53
6985 8222 1.335964 TGGTATTGCGCGAGAGATAGC 60.336 52.381 12.10 11.48 0.00 2.97
6986 8223 2.706555 TGGTATTGCGCGAGAGATAG 57.293 50.000 12.10 0.00 0.00 2.08
6987 8224 3.005367 TCATTGGTATTGCGCGAGAGATA 59.995 43.478 12.10 0.00 0.00 1.98
7005 8242 2.615447 CACTATCCATGCACGCTTCATT 59.385 45.455 0.00 0.00 0.00 2.57
7022 8259 3.096852 ACGGAGAATCATGTGACCACTA 58.903 45.455 1.62 0.00 36.25 2.74
7035 8272 3.189287 GCAAGACAATGTTCACGGAGAAT 59.811 43.478 0.00 0.00 38.76 2.40
7091 8328 1.487976 TCCCAGAGCCACAGATTGATC 59.512 52.381 0.00 0.00 0.00 2.92
7116 8353 1.523938 GTTAGGATGGCCGGCTGTC 60.524 63.158 28.56 22.99 39.96 3.51
7174 8412 8.693504 TCGTGTTTACTTCGTTTTCATTACTAG 58.306 33.333 0.00 0.00 0.00 2.57
7175 8413 8.572828 TCGTGTTTACTTCGTTTTCATTACTA 57.427 30.769 0.00 0.00 0.00 1.82
7176 8414 7.467557 TCGTGTTTACTTCGTTTTCATTACT 57.532 32.000 0.00 0.00 0.00 2.24
7177 8415 9.962759 ATATCGTGTTTACTTCGTTTTCATTAC 57.037 29.630 0.00 0.00 0.00 1.89
7188 8426 5.867716 ACACTCCACATATCGTGTTTACTTC 59.132 40.000 0.00 0.00 44.78 3.01
7220 8458 4.083565 GTTGGGCCAGTTTTAGGTAATCA 58.916 43.478 6.23 0.00 0.00 2.57
7244 8482 0.984230 TCACGGGCCTCTTTTCTCAT 59.016 50.000 0.84 0.00 0.00 2.90
7282 8520 1.607148 AGTTGTTTTTCCGGCTGCTAC 59.393 47.619 0.00 0.00 0.00 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.