Multiple sequence alignment - TraesCS1A01G029200
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1A01G029200 | chr1A | 100.000 | 7754 | 0 | 0 | 1 | 7754 | 13677212 | 13669459 | 0.000000e+00 | 14320.0 |
1 | TraesCS1A01G029200 | chr1A | 93.080 | 289 | 15 | 4 | 7096 | 7381 | 13420451 | 13420165 | 1.200000e-112 | 418.0 |
2 | TraesCS1A01G029200 | chr1A | 93.820 | 178 | 9 | 2 | 7577 | 7753 | 13419783 | 13419607 | 4.610000e-67 | 267.0 |
3 | TraesCS1A01G029200 | chr1A | 85.263 | 190 | 13 | 11 | 7383 | 7570 | 13420075 | 13419899 | 1.720000e-41 | 182.0 |
4 | TraesCS1A01G029200 | chr1D | 92.298 | 2415 | 94 | 30 | 5008 | 7381 | 11546272 | 11543909 | 0.000000e+00 | 3345.0 |
5 | TraesCS1A01G029200 | chr1D | 89.981 | 2126 | 147 | 28 | 1984 | 4078 | 11549594 | 11547504 | 0.000000e+00 | 2686.0 |
6 | TraesCS1A01G029200 | chr1D | 89.268 | 1435 | 66 | 22 | 468 | 1846 | 11551073 | 11549671 | 0.000000e+00 | 1716.0 |
7 | TraesCS1A01G029200 | chr1D | 97.988 | 845 | 17 | 0 | 4165 | 5009 | 11547278 | 11546434 | 0.000000e+00 | 1467.0 |
8 | TraesCS1A01G029200 | chr1D | 83.043 | 460 | 51 | 19 | 1 | 440 | 11551524 | 11551072 | 7.290000e-105 | 392.0 |
9 | TraesCS1A01G029200 | chr1D | 93.048 | 187 | 11 | 2 | 7384 | 7570 | 11543775 | 11543591 | 9.910000e-69 | 272.0 |
10 | TraesCS1A01G029200 | chr1D | 93.714 | 175 | 11 | 0 | 7580 | 7754 | 11543474 | 11543300 | 5.970000e-66 | 263.0 |
11 | TraesCS1A01G029200 | chr1B | 89.204 | 2501 | 152 | 45 | 1192 | 3633 | 17358275 | 17355834 | 0.000000e+00 | 3014.0 |
12 | TraesCS1A01G029200 | chr1B | 95.159 | 1570 | 48 | 11 | 5831 | 7377 | 17353217 | 17351653 | 0.000000e+00 | 2453.0 |
13 | TraesCS1A01G029200 | chr1B | 93.860 | 1482 | 64 | 14 | 5916 | 7377 | 16851518 | 16850044 | 0.000000e+00 | 2207.0 |
14 | TraesCS1A01G029200 | chr1B | 94.804 | 1174 | 37 | 10 | 6230 | 7381 | 16914927 | 16913756 | 0.000000e+00 | 1808.0 |
15 | TraesCS1A01G029200 | chr1B | 84.425 | 1252 | 117 | 46 | 4653 | 5843 | 17354772 | 17353538 | 0.000000e+00 | 1160.0 |
16 | TraesCS1A01G029200 | chr1B | 95.397 | 630 | 26 | 1 | 3007 | 3633 | 16922342 | 16921713 | 0.000000e+00 | 1000.0 |
17 | TraesCS1A01G029200 | chr1B | 93.770 | 610 | 22 | 7 | 5639 | 6234 | 16919680 | 16919073 | 0.000000e+00 | 902.0 |
18 | TraesCS1A01G029200 | chr1B | 91.993 | 587 | 28 | 6 | 4980 | 5549 | 16920286 | 16919702 | 0.000000e+00 | 806.0 |
19 | TraesCS1A01G029200 | chr1B | 92.371 | 485 | 26 | 7 | 4165 | 4649 | 17355496 | 17355023 | 0.000000e+00 | 680.0 |
20 | TraesCS1A01G029200 | chr1B | 92.181 | 486 | 28 | 6 | 4165 | 4649 | 16921375 | 16920899 | 0.000000e+00 | 678.0 |
21 | TraesCS1A01G029200 | chr1B | 86.754 | 536 | 51 | 13 | 520 | 1037 | 17359125 | 17358592 | 5.220000e-161 | 579.0 |
22 | TraesCS1A01G029200 | chr1B | 94.118 | 289 | 12 | 4 | 7096 | 7381 | 16742470 | 16742184 | 1.190000e-117 | 435.0 |
23 | TraesCS1A01G029200 | chr1B | 82.167 | 443 | 56 | 11 | 1 | 437 | 17359604 | 17359179 | 7.400000e-95 | 359.0 |
24 | TraesCS1A01G029200 | chr1B | 87.000 | 300 | 21 | 3 | 3875 | 4170 | 16921712 | 16921427 | 9.710000e-84 | 322.0 |
25 | TraesCS1A01G029200 | chr1B | 86.667 | 300 | 22 | 3 | 3875 | 4170 | 17355833 | 17355548 | 4.520000e-82 | 316.0 |
26 | TraesCS1A01G029200 | chr1B | 94.413 | 179 | 9 | 1 | 7577 | 7754 | 17351254 | 17351076 | 2.760000e-69 | 274.0 |
27 | TraesCS1A01G029200 | chr1B | 93.714 | 175 | 11 | 0 | 7580 | 7754 | 16913287 | 16913113 | 5.970000e-66 | 263.0 |
28 | TraesCS1A01G029200 | chr1B | 91.444 | 187 | 12 | 4 | 7384 | 7570 | 16913623 | 16913441 | 3.590000e-63 | 254.0 |
29 | TraesCS1A01G029200 | chr1B | 85.714 | 189 | 14 | 9 | 7383 | 7570 | 16742094 | 16741918 | 3.690000e-43 | 187.0 |
30 | TraesCS1A01G029200 | chr3A | 85.908 | 589 | 51 | 20 | 6816 | 7381 | 750729541 | 750728962 | 4.000000e-167 | 599.0 |
31 | TraesCS1A01G029200 | chr3A | 79.179 | 341 | 54 | 12 | 4308 | 4643 | 740353087 | 740352759 | 3.640000e-53 | 220.0 |
32 | TraesCS1A01G029200 | chr3A | 78.694 | 291 | 36 | 16 | 1000 | 1286 | 740356497 | 740356229 | 3.720000e-38 | 171.0 |
33 | TraesCS1A01G029200 | chr3A | 87.023 | 131 | 13 | 4 | 6669 | 6798 | 750730107 | 750729980 | 2.250000e-30 | 145.0 |
34 | TraesCS1A01G029200 | chr3A | 80.571 | 175 | 34 | 0 | 6456 | 6630 | 609956039 | 609956213 | 1.360000e-27 | 135.0 |
35 | TraesCS1A01G029200 | chr3A | 80.702 | 171 | 29 | 4 | 5687 | 5856 | 681463149 | 681463316 | 6.310000e-26 | 130.0 |
36 | TraesCS1A01G029200 | chr3A | 86.441 | 118 | 11 | 3 | 6402 | 6517 | 750730365 | 750730251 | 2.940000e-24 | 124.0 |
37 | TraesCS1A01G029200 | chr3A | 79.769 | 173 | 30 | 5 | 5687 | 5856 | 683193783 | 683193953 | 3.800000e-23 | 121.0 |
38 | TraesCS1A01G029200 | chr3A | 92.105 | 38 | 3 | 0 | 6557 | 6594 | 750730244 | 750730207 | 4.000000e-03 | 54.7 |
39 | TraesCS1A01G029200 | chr4B | 95.154 | 227 | 9 | 2 | 5156 | 5382 | 406211170 | 406211394 | 2.660000e-94 | 357.0 |
40 | TraesCS1A01G029200 | chr4B | 84.772 | 197 | 22 | 4 | 4938 | 5128 | 406210979 | 406211173 | 2.860000e-44 | 191.0 |
41 | TraesCS1A01G029200 | chr3D | 81.057 | 454 | 64 | 15 | 5056 | 5508 | 608068148 | 608067716 | 7.450000e-90 | 342.0 |
42 | TraesCS1A01G029200 | chr3D | 78.299 | 341 | 57 | 15 | 4308 | 4643 | 608069118 | 608068790 | 3.670000e-48 | 204.0 |
43 | TraesCS1A01G029200 | chr3D | 76.771 | 353 | 50 | 21 | 1000 | 1348 | 608072581 | 608072257 | 1.340000e-37 | 169.0 |
44 | TraesCS1A01G029200 | chr3D | 79.070 | 172 | 32 | 4 | 5687 | 5856 | 546337986 | 546338155 | 1.770000e-21 | 115.0 |
45 | TraesCS1A01G029200 | chr3B | 89.778 | 225 | 23 | 0 | 5056 | 5280 | 817823882 | 817823658 | 9.840000e-74 | 289.0 |
46 | TraesCS1A01G029200 | chr3B | 78.299 | 341 | 57 | 15 | 4308 | 4643 | 817824704 | 817824376 | 3.670000e-48 | 204.0 |
47 | TraesCS1A01G029200 | chr3B | 78.187 | 353 | 48 | 22 | 1000 | 1348 | 817828165 | 817827838 | 1.710000e-46 | 198.0 |
48 | TraesCS1A01G029200 | chr2B | 83.626 | 171 | 22 | 6 | 5688 | 5856 | 740319119 | 740319285 | 1.040000e-33 | 156.0 |
49 | TraesCS1A01G029200 | chr2A | 80.473 | 169 | 30 | 3 | 5687 | 5854 | 17812637 | 17812471 | 8.170000e-25 | 126.0 |
50 | TraesCS1A01G029200 | chr2D | 79.290 | 169 | 32 | 3 | 5687 | 5854 | 15837560 | 15837394 | 1.770000e-21 | 115.0 |
51 | TraesCS1A01G029200 | chr5D | 78.912 | 147 | 27 | 4 | 4312 | 4456 | 383778009 | 383777865 | 6.400000e-16 | 97.1 |
52 | TraesCS1A01G029200 | chr5A | 78.912 | 147 | 27 | 4 | 4312 | 4456 | 484080641 | 484080497 | 6.400000e-16 | 97.1 |
53 | TraesCS1A01G029200 | chr5B | 78.231 | 147 | 28 | 4 | 4312 | 4456 | 460267527 | 460267383 | 2.980000e-14 | 91.6 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1A01G029200 | chr1A | 13669459 | 13677212 | 7753 | True | 14320.000000 | 14320 | 100.000000 | 1 | 7754 | 1 | chr1A.!!$R1 | 7753 |
1 | TraesCS1A01G029200 | chr1A | 13419607 | 13420451 | 844 | True | 289.000000 | 418 | 90.721000 | 7096 | 7753 | 3 | chr1A.!!$R2 | 657 |
2 | TraesCS1A01G029200 | chr1D | 11543300 | 11551524 | 8224 | True | 1448.714286 | 3345 | 91.334286 | 1 | 7754 | 7 | chr1D.!!$R1 | 7753 |
3 | TraesCS1A01G029200 | chr1B | 16850044 | 16851518 | 1474 | True | 2207.000000 | 2207 | 93.860000 | 5916 | 7377 | 1 | chr1B.!!$R1 | 1461 |
4 | TraesCS1A01G029200 | chr1B | 17351076 | 17359604 | 8528 | True | 1104.375000 | 3014 | 88.895000 | 1 | 7754 | 8 | chr1B.!!$R5 | 7753 |
5 | TraesCS1A01G029200 | chr1B | 16913113 | 16914927 | 1814 | True | 775.000000 | 1808 | 93.320667 | 6230 | 7754 | 3 | chr1B.!!$R3 | 1524 |
6 | TraesCS1A01G029200 | chr1B | 16919073 | 16922342 | 3269 | True | 741.600000 | 1000 | 92.068200 | 3007 | 6234 | 5 | chr1B.!!$R4 | 3227 |
7 | TraesCS1A01G029200 | chr1B | 16741918 | 16742470 | 552 | True | 311.000000 | 435 | 89.916000 | 7096 | 7570 | 2 | chr1B.!!$R2 | 474 |
8 | TraesCS1A01G029200 | chr3A | 750728962 | 750730365 | 1403 | True | 230.675000 | 599 | 87.869250 | 6402 | 7381 | 4 | chr3A.!!$R2 | 979 |
9 | TraesCS1A01G029200 | chr3D | 608067716 | 608072581 | 4865 | True | 238.333333 | 342 | 78.709000 | 1000 | 5508 | 3 | chr3D.!!$R1 | 4508 |
10 | TraesCS1A01G029200 | chr3B | 817823658 | 817828165 | 4507 | True | 230.333333 | 289 | 82.088000 | 1000 | 5280 | 3 | chr3B.!!$R1 | 4280 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
464 | 483 | 0.027194 | CCTGATCTGATTGCAACGCG | 59.973 | 55.000 | 3.53 | 3.53 | 0.00 | 6.01 | F |
485 | 504 | 0.249280 | CGACCTGCAAAAACCCAACC | 60.249 | 55.000 | 0.00 | 0.00 | 0.00 | 3.77 | F |
509 | 533 | 0.323725 | TCCATTTCCAGCCAAGGAGC | 60.324 | 55.000 | 0.00 | 0.00 | 39.25 | 4.70 | F |
920 | 981 | 0.449388 | GGCTGCGGAGATCTTGTTTG | 59.551 | 55.000 | 8.65 | 0.00 | 0.00 | 2.93 | F |
1812 | 2104 | 0.543277 | CTCATAGCTTGCAGGGTGGA | 59.457 | 55.000 | 11.20 | 7.34 | 0.00 | 4.02 | F |
2420 | 3790 | 0.602562 | CCAACCACAACCGCAATGAT | 59.397 | 50.000 | 0.00 | 0.00 | 0.00 | 2.45 | F |
2469 | 3839 | 1.067084 | CTGCATCGCGAGACTGGAT | 59.933 | 57.895 | 16.66 | 0.00 | 46.97 | 3.41 | F |
2603 | 3973 | 1.138568 | CATCCCCTGATCCTGAGCTT | 58.861 | 55.000 | 0.00 | 0.00 | 0.00 | 3.74 | F |
3029 | 4411 | 1.404851 | GGCTATGCTTCGCCTAGGATC | 60.405 | 57.143 | 14.75 | 0.00 | 42.98 | 3.36 | F |
3907 | 5305 | 1.754803 | TGCATCGTACAGTCTTAGGGG | 59.245 | 52.381 | 0.00 | 0.00 | 0.00 | 4.79 | F |
5031 | 7304 | 1.003580 | TGGCTGGAAGAGTAAAGGCAG | 59.996 | 52.381 | 0.00 | 0.00 | 39.94 | 4.85 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1495 | 1765 | 0.676782 | GCACTGCCGAACCAATACCT | 60.677 | 55.000 | 0.00 | 0.0 | 0.00 | 3.08 | R |
1970 | 2266 | 0.739112 | CAGGAACCTCAGCGCTTCTC | 60.739 | 60.000 | 7.50 | 0.0 | 0.00 | 2.87 | R |
2250 | 3007 | 2.292016 | CGCAGTTGTAACATGGAACCAA | 59.708 | 45.455 | 0.00 | 0.0 | 0.00 | 3.67 | R |
2705 | 4075 | 0.947244 | CAGGTTCACCAACAGCAGAC | 59.053 | 55.000 | 0.00 | 0.0 | 38.89 | 3.51 | R |
3663 | 5060 | 0.250081 | TGGTGCGCTTGTGTGATACA | 60.250 | 50.000 | 9.73 | 0.0 | 37.56 | 2.29 | R |
4017 | 5419 | 0.035152 | ACATGCGCATTTGAGAGGGA | 60.035 | 50.000 | 22.81 | 0.0 | 0.00 | 4.20 | R |
4181 | 5722 | 1.975660 | GGTCAGTACCCTGTGCAAAA | 58.024 | 50.000 | 0.00 | 0.0 | 40.21 | 2.44 | R |
4818 | 6710 | 2.814336 | GCTAGTGGAAAGAGGTGGTTTG | 59.186 | 50.000 | 0.00 | 0.0 | 0.00 | 2.93 | R |
5031 | 7304 | 6.910972 | CACATGTATCATCAAATGACTCAAGC | 59.089 | 38.462 | 0.00 | 0.0 | 43.01 | 4.01 | R |
6025 | 8694 | 2.256117 | AAGCAAACGGTAAGCAGTCT | 57.744 | 45.000 | 7.36 | 0.0 | 0.00 | 3.24 | R |
6878 | 10017 | 2.297315 | TGTACACTCTCTCCAGTGCAAG | 59.703 | 50.000 | 0.00 | 0.0 | 46.81 | 4.01 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
24 | 26 | 1.912001 | TACCCGACGAACATAAAGCG | 58.088 | 50.000 | 0.00 | 0.00 | 0.00 | 4.68 |
27 | 29 | 0.650512 | CCGACGAACATAAAGCGCAT | 59.349 | 50.000 | 11.47 | 0.00 | 0.00 | 4.73 |
37 | 39 | 4.956085 | ACATAAAGCGCATGGTGTATCTA | 58.044 | 39.130 | 11.47 | 0.00 | 0.00 | 1.98 |
40 | 42 | 3.543680 | AAGCGCATGGTGTATCTAAGT | 57.456 | 42.857 | 11.47 | 0.00 | 0.00 | 2.24 |
45 | 47 | 4.094294 | GCGCATGGTGTATCTAAGTTTCAA | 59.906 | 41.667 | 0.30 | 0.00 | 0.00 | 2.69 |
46 | 48 | 5.220854 | GCGCATGGTGTATCTAAGTTTCAAT | 60.221 | 40.000 | 0.30 | 0.00 | 0.00 | 2.57 |
49 | 51 | 8.394877 | CGCATGGTGTATCTAAGTTTCAATAAA | 58.605 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
97 | 99 | 3.409026 | AACACTCATGAAGGGTCACTC | 57.591 | 47.619 | 0.00 | 0.00 | 42.32 | 3.51 |
114 | 116 | 0.594602 | CTCTTGACCCGTCACGTACA | 59.405 | 55.000 | 0.00 | 0.00 | 39.66 | 2.90 |
129 | 131 | 3.305094 | CACGTACACCCATTTATCGACAC | 59.695 | 47.826 | 0.00 | 0.00 | 0.00 | 3.67 |
137 | 139 | 2.350498 | CCATTTATCGACACGACAACCC | 59.650 | 50.000 | 0.00 | 0.00 | 39.18 | 4.11 |
141 | 143 | 1.792006 | ATCGACACGACAACCCTTTC | 58.208 | 50.000 | 0.00 | 0.00 | 39.18 | 2.62 |
150 | 152 | 1.266989 | GACAACCCTTTCCTCAAAGCG | 59.733 | 52.381 | 0.00 | 0.00 | 38.19 | 4.68 |
166 | 168 | 5.457140 | TCAAAGCGAATCAACAAATACACC | 58.543 | 37.500 | 0.00 | 0.00 | 0.00 | 4.16 |
202 | 204 | 4.145807 | TGCCTATTTCGAAGACCCAAAAA | 58.854 | 39.130 | 0.00 | 0.00 | 34.32 | 1.94 |
221 | 230 | 4.419522 | AAAACTGCAATCACACGGTATC | 57.580 | 40.909 | 0.00 | 0.00 | 0.00 | 2.24 |
222 | 231 | 3.334583 | AACTGCAATCACACGGTATCT | 57.665 | 42.857 | 0.00 | 0.00 | 0.00 | 1.98 |
236 | 245 | 4.509970 | CACGGTATCTCAAGTTCAACAACA | 59.490 | 41.667 | 0.00 | 0.00 | 34.60 | 3.33 |
240 | 249 | 5.007332 | GGTATCTCAAGTTCAACAACACGTT | 59.993 | 40.000 | 0.00 | 0.00 | 38.83 | 3.99 |
268 | 286 | 9.921637 | TTTGTACCATTGATAACAAAAATCTCC | 57.078 | 29.630 | 8.01 | 0.00 | 38.50 | 3.71 |
276 | 294 | 1.250840 | ACAAAAATCTCCGGCAGCCC | 61.251 | 55.000 | 5.63 | 0.00 | 0.00 | 5.19 |
283 | 301 | 0.541764 | TCTCCGGCAGCCCAAAAATT | 60.542 | 50.000 | 5.63 | 0.00 | 0.00 | 1.82 |
286 | 304 | 1.273886 | TCCGGCAGCCCAAAAATTAAC | 59.726 | 47.619 | 5.63 | 0.00 | 0.00 | 2.01 |
288 | 306 | 1.068194 | CGGCAGCCCAAAAATTAACGA | 60.068 | 47.619 | 5.63 | 0.00 | 0.00 | 3.85 |
289 | 307 | 2.606108 | GGCAGCCCAAAAATTAACGAG | 58.394 | 47.619 | 0.00 | 0.00 | 0.00 | 4.18 |
300 | 318 | 9.301153 | CCCAAAAATTAACGAGGAAATAATGAG | 57.699 | 33.333 | 0.00 | 0.00 | 0.00 | 2.90 |
301 | 319 | 9.301153 | CCAAAAATTAACGAGGAAATAATGAGG | 57.699 | 33.333 | 0.00 | 0.00 | 0.00 | 3.86 |
354 | 373 | 8.608185 | AAAGAGGAAGAAGAAGATACTCTGAT | 57.392 | 34.615 | 0.00 | 0.00 | 34.39 | 2.90 |
440 | 459 | 4.520492 | GCTTGAAGAGGAATTTGACCTGAA | 59.480 | 41.667 | 0.00 | 0.00 | 37.93 | 3.02 |
441 | 460 | 5.335504 | GCTTGAAGAGGAATTTGACCTGAAG | 60.336 | 44.000 | 0.00 | 0.00 | 37.93 | 3.02 |
442 | 461 | 4.074970 | TGAAGAGGAATTTGACCTGAAGC | 58.925 | 43.478 | 0.00 | 0.00 | 37.93 | 3.86 |
443 | 462 | 3.078891 | AGAGGAATTTGACCTGAAGCC | 57.921 | 47.619 | 0.00 | 0.00 | 37.93 | 4.35 |
444 | 463 | 2.646798 | AGAGGAATTTGACCTGAAGCCT | 59.353 | 45.455 | 0.00 | 0.00 | 37.93 | 4.58 |
445 | 464 | 3.013219 | GAGGAATTTGACCTGAAGCCTC | 58.987 | 50.000 | 0.00 | 0.00 | 37.93 | 4.70 |
446 | 465 | 2.095461 | GGAATTTGACCTGAAGCCTCC | 58.905 | 52.381 | 0.00 | 0.00 | 0.00 | 4.30 |
447 | 466 | 2.291217 | GGAATTTGACCTGAAGCCTCCT | 60.291 | 50.000 | 0.00 | 0.00 | 0.00 | 3.69 |
448 | 467 | 2.503895 | ATTTGACCTGAAGCCTCCTG | 57.496 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
449 | 468 | 1.434188 | TTTGACCTGAAGCCTCCTGA | 58.566 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
450 | 469 | 1.661463 | TTGACCTGAAGCCTCCTGAT | 58.339 | 50.000 | 0.00 | 0.00 | 0.00 | 2.90 |
451 | 470 | 1.198713 | TGACCTGAAGCCTCCTGATC | 58.801 | 55.000 | 0.00 | 0.00 | 0.00 | 2.92 |
452 | 471 | 1.273495 | TGACCTGAAGCCTCCTGATCT | 60.273 | 52.381 | 0.00 | 0.00 | 0.00 | 2.75 |
453 | 472 | 1.138661 | GACCTGAAGCCTCCTGATCTG | 59.861 | 57.143 | 0.00 | 0.00 | 0.00 | 2.90 |
454 | 473 | 1.273495 | ACCTGAAGCCTCCTGATCTGA | 60.273 | 52.381 | 0.38 | 0.00 | 0.00 | 3.27 |
455 | 474 | 2.048601 | CCTGAAGCCTCCTGATCTGAT | 58.951 | 52.381 | 0.38 | 0.00 | 0.00 | 2.90 |
456 | 475 | 2.438763 | CCTGAAGCCTCCTGATCTGATT | 59.561 | 50.000 | 0.38 | 0.00 | 0.00 | 2.57 |
457 | 476 | 3.468770 | CTGAAGCCTCCTGATCTGATTG | 58.531 | 50.000 | 0.38 | 0.00 | 0.00 | 2.67 |
458 | 477 | 2.220313 | GAAGCCTCCTGATCTGATTGC | 58.780 | 52.381 | 0.38 | 0.76 | 0.00 | 3.56 |
459 | 478 | 1.210538 | AGCCTCCTGATCTGATTGCA | 58.789 | 50.000 | 0.38 | 0.00 | 0.00 | 4.08 |
460 | 479 | 1.562942 | AGCCTCCTGATCTGATTGCAA | 59.437 | 47.619 | 0.00 | 0.00 | 0.00 | 4.08 |
461 | 480 | 1.674962 | GCCTCCTGATCTGATTGCAAC | 59.325 | 52.381 | 0.00 | 0.00 | 0.00 | 4.17 |
462 | 481 | 1.938577 | CCTCCTGATCTGATTGCAACG | 59.061 | 52.381 | 0.00 | 0.00 | 0.00 | 4.10 |
463 | 482 | 1.329906 | CTCCTGATCTGATTGCAACGC | 59.670 | 52.381 | 0.00 | 0.00 | 0.00 | 4.84 |
464 | 483 | 0.027194 | CCTGATCTGATTGCAACGCG | 59.973 | 55.000 | 3.53 | 3.53 | 0.00 | 6.01 |
465 | 484 | 0.027194 | CTGATCTGATTGCAACGCGG | 59.973 | 55.000 | 12.47 | 2.04 | 0.00 | 6.46 |
466 | 485 | 1.297893 | GATCTGATTGCAACGCGGC | 60.298 | 57.895 | 12.47 | 5.57 | 0.00 | 6.53 |
467 | 486 | 2.954756 | GATCTGATTGCAACGCGGCG | 62.955 | 60.000 | 22.36 | 22.36 | 36.28 | 6.46 |
468 | 487 | 3.787676 | CTGATTGCAACGCGGCGA | 61.788 | 61.111 | 30.94 | 6.23 | 36.28 | 5.54 |
485 | 504 | 0.249280 | CGACCTGCAAAAACCCAACC | 60.249 | 55.000 | 0.00 | 0.00 | 0.00 | 3.77 |
509 | 533 | 0.323725 | TCCATTTCCAGCCAAGGAGC | 60.324 | 55.000 | 0.00 | 0.00 | 39.25 | 4.70 |
555 | 589 | 3.961414 | GCCCAAACCCCTCCGTCA | 61.961 | 66.667 | 0.00 | 0.00 | 0.00 | 4.35 |
556 | 590 | 2.840576 | CCCAAACCCCTCCGTCAA | 59.159 | 61.111 | 0.00 | 0.00 | 0.00 | 3.18 |
567 | 601 | 4.770874 | CCGTCAAATCCCGGCCGT | 62.771 | 66.667 | 26.12 | 1.61 | 37.43 | 5.68 |
568 | 602 | 2.744709 | CGTCAAATCCCGGCCGTT | 60.745 | 61.111 | 26.12 | 9.34 | 0.00 | 4.44 |
592 | 626 | 3.900892 | CGGATCCGACGGTCCAGG | 61.901 | 72.222 | 30.62 | 12.94 | 42.83 | 4.45 |
630 | 664 | 0.821711 | TTAACACAGCCGCCTTGCTT | 60.822 | 50.000 | 0.00 | 0.00 | 40.32 | 3.91 |
889 | 950 | 3.514362 | GTAATGGCGGCGGGGTTG | 61.514 | 66.667 | 9.78 | 0.00 | 0.00 | 3.77 |
920 | 981 | 0.449388 | GGCTGCGGAGATCTTGTTTG | 59.551 | 55.000 | 8.65 | 0.00 | 0.00 | 2.93 |
922 | 983 | 1.813513 | CTGCGGAGATCTTGTTTGGT | 58.186 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
935 | 996 | 4.686554 | TCTTGTTTGGTTTCGTTTGTTTGG | 59.313 | 37.500 | 0.00 | 0.00 | 0.00 | 3.28 |
962 | 1023 | 0.759060 | GGTGGTGGGGCTGTTTCTTT | 60.759 | 55.000 | 0.00 | 0.00 | 0.00 | 2.52 |
965 | 1026 | 1.063266 | TGGTGGGGCTGTTTCTTTCTT | 60.063 | 47.619 | 0.00 | 0.00 | 0.00 | 2.52 |
968 | 1029 | 1.332195 | GGGGCTGTTTCTTTCTTGCT | 58.668 | 50.000 | 0.00 | 0.00 | 0.00 | 3.91 |
1479 | 1749 | 6.685403 | TCTCGTTTTTCATCTTTCGTTTTCAC | 59.315 | 34.615 | 0.00 | 0.00 | 0.00 | 3.18 |
1486 | 1756 | 3.624326 | TCTTTCGTTTTCACCATGCTG | 57.376 | 42.857 | 0.00 | 0.00 | 0.00 | 4.41 |
1493 | 1763 | 6.176975 | TCGTTTTCACCATGCTGTTATTAG | 57.823 | 37.500 | 0.00 | 0.00 | 0.00 | 1.73 |
1494 | 1764 | 5.703592 | TCGTTTTCACCATGCTGTTATTAGT | 59.296 | 36.000 | 0.00 | 0.00 | 0.00 | 2.24 |
1495 | 1765 | 6.874664 | TCGTTTTCACCATGCTGTTATTAGTA | 59.125 | 34.615 | 0.00 | 0.00 | 0.00 | 1.82 |
1496 | 1766 | 7.064134 | TCGTTTTCACCATGCTGTTATTAGTAG | 59.936 | 37.037 | 0.00 | 0.00 | 0.00 | 2.57 |
1507 | 1777 | 6.982141 | TGCTGTTATTAGTAGGTATTGGTTCG | 59.018 | 38.462 | 0.00 | 0.00 | 0.00 | 3.95 |
1540 | 1810 | 5.063944 | GTGTGTTATGACTTGCTATGAGTGG | 59.936 | 44.000 | 0.00 | 0.00 | 0.00 | 4.00 |
1554 | 1824 | 1.416401 | TGAGTGGAGTGGACTGGAAAC | 59.584 | 52.381 | 0.00 | 0.00 | 0.00 | 2.78 |
1592 | 1862 | 3.600388 | GGTGGTCAACTGAATAGTCCAG | 58.400 | 50.000 | 0.00 | 0.00 | 35.69 | 3.86 |
1685 | 1968 | 7.573096 | CGGTTAACTGAATAGTGCAAAGTTCAT | 60.573 | 37.037 | 8.90 | 0.56 | 37.19 | 2.57 |
1686 | 1969 | 8.726988 | GGTTAACTGAATAGTGCAAAGTTCATA | 58.273 | 33.333 | 5.42 | 0.00 | 37.19 | 2.15 |
1687 | 1970 | 9.760660 | GTTAACTGAATAGTGCAAAGTTCATAG | 57.239 | 33.333 | 8.72 | 3.04 | 37.19 | 2.23 |
1699 | 1982 | 7.065085 | GTGCAAAGTTCATAGTACATCATGAGT | 59.935 | 37.037 | 0.09 | 2.37 | 32.96 | 3.41 |
1709 | 1992 | 6.707440 | AGTACATCATGAGTCTAGTCTTGG | 57.293 | 41.667 | 0.09 | 0.00 | 0.00 | 3.61 |
1741 | 2025 | 5.163663 | GCTGTTTGATTTATCGATTGGGTGA | 60.164 | 40.000 | 1.71 | 0.00 | 0.00 | 4.02 |
1770 | 2054 | 4.274214 | TGCTTCTCAGTGTGATTTGAAGTG | 59.726 | 41.667 | 0.00 | 0.00 | 32.22 | 3.16 |
1786 | 2078 | 8.585471 | ATTTGAAGTGGCATATATAGGAATGG | 57.415 | 34.615 | 0.00 | 0.00 | 0.00 | 3.16 |
1809 | 2101 | 2.169352 | CTGTACTCATAGCTTGCAGGGT | 59.831 | 50.000 | 5.64 | 5.64 | 0.00 | 4.34 |
1810 | 2102 | 2.093500 | TGTACTCATAGCTTGCAGGGTG | 60.093 | 50.000 | 11.20 | 0.00 | 0.00 | 4.61 |
1812 | 2104 | 0.543277 | CTCATAGCTTGCAGGGTGGA | 59.457 | 55.000 | 11.20 | 7.34 | 0.00 | 4.02 |
1813 | 2105 | 0.991146 | TCATAGCTTGCAGGGTGGAA | 59.009 | 50.000 | 11.20 | 0.00 | 0.00 | 3.53 |
1814 | 2106 | 1.098050 | CATAGCTTGCAGGGTGGAAC | 58.902 | 55.000 | 11.20 | 0.00 | 0.00 | 3.62 |
1815 | 2107 | 0.698238 | ATAGCTTGCAGGGTGGAACA | 59.302 | 50.000 | 11.20 | 0.00 | 39.98 | 3.18 |
1819 | 2113 | 1.691196 | CTTGCAGGGTGGAACAAAGA | 58.309 | 50.000 | 0.00 | 0.00 | 44.16 | 2.52 |
1821 | 2115 | 0.843309 | TGCAGGGTGGAACAAAGAGA | 59.157 | 50.000 | 0.00 | 0.00 | 44.16 | 3.10 |
1822 | 2116 | 1.239347 | GCAGGGTGGAACAAAGAGAC | 58.761 | 55.000 | 0.00 | 0.00 | 44.16 | 3.36 |
1840 | 2134 | 4.021894 | AGAGACGCTATTCAGTTTGAGTGT | 60.022 | 41.667 | 0.00 | 0.00 | 35.43 | 3.55 |
1853 | 2147 | 6.821160 | TCAGTTTGAGTGTTGAATAGTGTTGA | 59.179 | 34.615 | 0.00 | 0.00 | 0.00 | 3.18 |
1854 | 2148 | 7.498900 | TCAGTTTGAGTGTTGAATAGTGTTGAT | 59.501 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
1859 | 2153 | 8.394971 | TGAGTGTTGAATAGTGTTGATTGATT | 57.605 | 30.769 | 0.00 | 0.00 | 0.00 | 2.57 |
1878 | 2174 | 7.707624 | TTGATTTATGAATTCTCAGCCAGTT | 57.292 | 32.000 | 7.05 | 0.00 | 34.23 | 3.16 |
1899 | 2195 | 8.073768 | CCAGTTTTTCTTTCTTTCGTAGCATTA | 58.926 | 33.333 | 0.00 | 0.00 | 0.00 | 1.90 |
1933 | 2229 | 9.439500 | TGGGTTATTGTAACTGTTATCACTAAC | 57.561 | 33.333 | 19.95 | 19.95 | 38.17 | 2.34 |
1947 | 2243 | 9.098355 | TGTTATCACTAACAGTTGCTGAATATC | 57.902 | 33.333 | 2.91 | 0.00 | 41.73 | 1.63 |
1954 | 2250 | 6.899393 | AACAGTTGCTGAATATCCTTTTCA | 57.101 | 33.333 | 2.91 | 0.00 | 35.18 | 2.69 |
1959 | 2255 | 9.459640 | CAGTTGCTGAATATCCTTTTCATATTG | 57.540 | 33.333 | 0.00 | 0.00 | 32.94 | 1.90 |
1962 | 2258 | 8.985315 | TGCTGAATATCCTTTTCATATTGACT | 57.015 | 30.769 | 0.00 | 0.00 | 32.94 | 3.41 |
1970 | 2266 | 7.812690 | TCCTTTTCATATTGACTGGATCATG | 57.187 | 36.000 | 0.00 | 0.00 | 37.11 | 3.07 |
1977 | 2273 | 2.591571 | TGACTGGATCATGAGAAGCG | 57.408 | 50.000 | 0.09 | 0.00 | 29.99 | 4.68 |
1979 | 2275 | 0.829333 | ACTGGATCATGAGAAGCGCT | 59.171 | 50.000 | 2.64 | 2.64 | 0.00 | 5.92 |
1990 | 2286 | 2.348998 | AAGCGCTGAGGTTCCTGG | 59.651 | 61.111 | 12.58 | 0.00 | 35.29 | 4.45 |
2025 | 2321 | 9.117183 | TCTGAATTTACTGGATCATGAGAAATG | 57.883 | 33.333 | 0.09 | 0.00 | 0.00 | 2.32 |
2172 | 2691 | 2.565841 | CCTGCATTAGGCCAGTAGAAC | 58.434 | 52.381 | 5.01 | 0.00 | 43.89 | 3.01 |
2176 | 2695 | 2.608090 | GCATTAGGCCAGTAGAACGAAC | 59.392 | 50.000 | 5.01 | 0.00 | 36.11 | 3.95 |
2187 | 2706 | 4.448060 | CAGTAGAACGAACCTTCCAAACTC | 59.552 | 45.833 | 0.00 | 0.00 | 0.00 | 3.01 |
2189 | 2708 | 3.467803 | AGAACGAACCTTCCAAACTCTG | 58.532 | 45.455 | 0.00 | 0.00 | 0.00 | 3.35 |
2194 | 2713 | 2.278332 | ACCTTCCAAACTCTGGCTTC | 57.722 | 50.000 | 0.00 | 0.00 | 45.98 | 3.86 |
2197 | 2716 | 2.431454 | CTTCCAAACTCTGGCTTCCTC | 58.569 | 52.381 | 0.00 | 0.00 | 45.98 | 3.71 |
2198 | 2717 | 1.434188 | TCCAAACTCTGGCTTCCTCA | 58.566 | 50.000 | 0.00 | 0.00 | 45.98 | 3.86 |
2199 | 2718 | 1.072331 | TCCAAACTCTGGCTTCCTCAC | 59.928 | 52.381 | 0.00 | 0.00 | 45.98 | 3.51 |
2200 | 2719 | 1.528129 | CAAACTCTGGCTTCCTCACC | 58.472 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
2210 | 2729 | 4.816126 | TGGCTTCCTCACCAGTATATACT | 58.184 | 43.478 | 9.71 | 9.71 | 36.90 | 2.12 |
2283 | 3040 | 7.197071 | TGTTACAACTGCGAACAATCTAATT | 57.803 | 32.000 | 0.00 | 0.00 | 30.37 | 1.40 |
2310 | 3603 | 9.219603 | TGGACAGTTCTATTTCTATTCAGTTTG | 57.780 | 33.333 | 0.00 | 0.00 | 0.00 | 2.93 |
2420 | 3790 | 0.602562 | CCAACCACAACCGCAATGAT | 59.397 | 50.000 | 0.00 | 0.00 | 0.00 | 2.45 |
2469 | 3839 | 1.067084 | CTGCATCGCGAGACTGGAT | 59.933 | 57.895 | 16.66 | 0.00 | 46.97 | 3.41 |
2546 | 3916 | 3.120095 | ACAATGAGTTGTCATCACATGCG | 60.120 | 43.478 | 0.00 | 0.00 | 45.14 | 4.73 |
2567 | 3937 | 1.453633 | ATGCATCTATTCTGGGGCCT | 58.546 | 50.000 | 0.84 | 0.00 | 0.00 | 5.19 |
2603 | 3973 | 1.138568 | CATCCCCTGATCCTGAGCTT | 58.861 | 55.000 | 0.00 | 0.00 | 0.00 | 3.74 |
2705 | 4075 | 2.227968 | CTTCTTTCCGCCGCAGTTCG | 62.228 | 60.000 | 0.00 | 0.00 | 38.08 | 3.95 |
2774 | 4144 | 2.105128 | CTGTCATCGTCGAGGGCC | 59.895 | 66.667 | 9.23 | 0.00 | 0.00 | 5.80 |
2928 | 4310 | 3.143010 | CCTGAGGGGTATTCGGCTA | 57.857 | 57.895 | 0.00 | 0.00 | 0.00 | 3.93 |
2929 | 4311 | 1.420430 | CCTGAGGGGTATTCGGCTAA | 58.580 | 55.000 | 0.00 | 0.00 | 0.00 | 3.09 |
2933 | 4315 | 3.042682 | TGAGGGGTATTCGGCTAATTCA | 58.957 | 45.455 | 0.00 | 0.00 | 0.00 | 2.57 |
2934 | 4316 | 3.071023 | TGAGGGGTATTCGGCTAATTCAG | 59.929 | 47.826 | 0.00 | 0.00 | 0.00 | 3.02 |
2936 | 4318 | 3.071167 | AGGGGTATTCGGCTAATTCAGTC | 59.929 | 47.826 | 0.00 | 0.00 | 0.00 | 3.51 |
3029 | 4411 | 1.404851 | GGCTATGCTTCGCCTAGGATC | 60.405 | 57.143 | 14.75 | 0.00 | 42.98 | 3.36 |
3086 | 4468 | 5.079643 | AGACAAAATTTAGGTGGTGCATCT | 58.920 | 37.500 | 0.00 | 0.00 | 0.00 | 2.90 |
3095 | 4477 | 2.906354 | GGTGGTGCATCTAACTACCTG | 58.094 | 52.381 | 0.00 | 0.00 | 43.72 | 4.00 |
3134 | 4516 | 2.202866 | TCCGACTGGAGCATCTTCC | 58.797 | 57.895 | 0.00 | 0.00 | 40.17 | 3.46 |
3341 | 4735 | 2.043664 | TGGATTTGGCCTTGGTTATGGA | 59.956 | 45.455 | 3.32 | 0.00 | 0.00 | 3.41 |
3554 | 4948 | 5.175090 | AGAGCAACAAAAGCAGAACTTAC | 57.825 | 39.130 | 0.00 | 0.00 | 37.75 | 2.34 |
3572 | 4966 | 2.483583 | ACGAGCTCTCTGAAATAGCG | 57.516 | 50.000 | 12.85 | 0.00 | 41.19 | 4.26 |
3614 | 5008 | 6.149308 | TCAGGTACACTTCTGCATTTAATGTG | 59.851 | 38.462 | 6.81 | 0.00 | 0.00 | 3.21 |
3660 | 5057 | 9.838975 | CAGCATGTAAACTGTAATGATTTGTAA | 57.161 | 29.630 | 0.00 | 0.00 | 0.00 | 2.41 |
3662 | 5059 | 9.840427 | GCATGTAAACTGTAATGATTTGTAAGT | 57.160 | 29.630 | 0.00 | 0.00 | 0.00 | 2.24 |
3691 | 5088 | 2.677836 | CACAAGCGCACCATACAGTTAT | 59.322 | 45.455 | 11.47 | 0.00 | 0.00 | 1.89 |
3701 | 5098 | 6.475207 | GCACCATACAGTTATTGTTACTTCG | 58.525 | 40.000 | 0.00 | 0.00 | 41.29 | 3.79 |
3708 | 5105 | 9.784680 | ATACAGTTATTGTTACTTCGTAGTCAG | 57.215 | 33.333 | 0.00 | 0.00 | 41.29 | 3.51 |
3714 | 5111 | 6.866010 | TTGTTACTTCGTAGTCAGTAGTCA | 57.134 | 37.500 | 0.00 | 0.00 | 35.78 | 3.41 |
3728 | 5125 | 7.543756 | AGTCAGTAGTCAGAGCTATTTCTTTC | 58.456 | 38.462 | 0.00 | 0.00 | 0.00 | 2.62 |
3773 | 5170 | 8.091385 | TGAACTGCTATATTGCATACATGAAG | 57.909 | 34.615 | 12.26 | 1.33 | 42.48 | 3.02 |
3858 | 5256 | 8.709308 | AGATTGTTTCTACAGCCTAGTGATAAT | 58.291 | 33.333 | 0.00 | 0.00 | 35.28 | 1.28 |
3907 | 5305 | 1.754803 | TGCATCGTACAGTCTTAGGGG | 59.245 | 52.381 | 0.00 | 0.00 | 0.00 | 4.79 |
3942 | 5340 | 4.633565 | CAGAAAGCACACTAATCCTCCTTC | 59.366 | 45.833 | 0.00 | 0.00 | 0.00 | 3.46 |
4030 | 5432 | 3.563390 | GCTTCTATGTCCCTCTCAAATGC | 59.437 | 47.826 | 0.00 | 0.00 | 0.00 | 3.56 |
4064 | 5466 | 2.033299 | GCACACACATACTGCACAAAGT | 59.967 | 45.455 | 0.00 | 0.00 | 0.00 | 2.66 |
4078 | 5480 | 8.673626 | ACTGCACAAAGTCGATAAAAATTATG | 57.326 | 30.769 | 0.00 | 0.00 | 0.00 | 1.90 |
4525 | 6148 | 6.269307 | GGTACTTATCCTTATGGTCTGCCTTA | 59.731 | 42.308 | 0.00 | 0.00 | 35.27 | 2.69 |
4897 | 6791 | 5.012239 | AGCTGTTATTTCAGAAGGCATCAA | 58.988 | 37.500 | 0.00 | 0.00 | 37.61 | 2.57 |
5031 | 7304 | 1.003580 | TGGCTGGAAGAGTAAAGGCAG | 59.996 | 52.381 | 0.00 | 0.00 | 39.94 | 4.85 |
5317 | 7605 | 5.070847 | ACATGCCCCCTTGATAAATTCATTC | 59.929 | 40.000 | 0.00 | 0.00 | 33.34 | 2.67 |
5366 | 7656 | 7.468141 | AATCTACCTCGCTCATTATCATGTA | 57.532 | 36.000 | 0.00 | 0.00 | 0.00 | 2.29 |
5549 | 7839 | 6.013293 | ACCTTGAACTTATCCAAGCTTCTACT | 60.013 | 38.462 | 0.00 | 0.00 | 38.65 | 2.57 |
5550 | 7840 | 6.314896 | CCTTGAACTTATCCAAGCTTCTACTG | 59.685 | 42.308 | 0.00 | 0.00 | 38.65 | 2.74 |
5552 | 7842 | 7.476540 | TGAACTTATCCAAGCTTCTACTGTA | 57.523 | 36.000 | 0.00 | 0.00 | 34.94 | 2.74 |
5553 | 7843 | 8.079211 | TGAACTTATCCAAGCTTCTACTGTAT | 57.921 | 34.615 | 0.00 | 0.00 | 34.94 | 2.29 |
5604 | 7912 | 7.615582 | TCATCTGAAGGTTATCATGTTGTTC | 57.384 | 36.000 | 0.00 | 0.00 | 0.00 | 3.18 |
5659 | 7967 | 5.648330 | AGTTTTCCTTTTGTACTCCCTCT | 57.352 | 39.130 | 0.00 | 0.00 | 0.00 | 3.69 |
5799 | 8110 | 6.629128 | TCGGCATTGTGAATGTTGATATTTT | 58.371 | 32.000 | 0.00 | 0.00 | 41.01 | 1.82 |
5955 | 8604 | 4.216411 | TCTGTTTTGGGTAGTAGCATCC | 57.784 | 45.455 | 1.13 | 0.00 | 0.00 | 3.51 |
6044 | 8713 | 2.256117 | AGACTGCTTACCGTTTGCTT | 57.744 | 45.000 | 0.00 | 0.00 | 0.00 | 3.91 |
6535 | 9214 | 3.489355 | TCAGCAGAGAGAGATGATCCTC | 58.511 | 50.000 | 3.62 | 3.62 | 0.00 | 3.71 |
7301 | 10471 | 6.030228 | GCATGAGTTAGTTTATGTTCTTGCC | 58.970 | 40.000 | 0.00 | 0.00 | 32.70 | 4.52 |
7342 | 10517 | 8.477256 | CCAAGATTCATGGTGTTTGGTATTTAT | 58.523 | 33.333 | 0.00 | 0.00 | 32.44 | 1.40 |
7413 | 10719 | 9.964354 | AGGCTATGCATATCAGATAAAATGTTA | 57.036 | 29.630 | 6.92 | 0.00 | 0.00 | 2.41 |
7532 | 10839 | 1.763545 | GTAGGAGGGTAGGCTCAAAGG | 59.236 | 57.143 | 0.00 | 0.00 | 0.00 | 3.11 |
7553 | 10860 | 6.502136 | AGGAAGTAACTGAGCTAAAATTGC | 57.498 | 37.500 | 0.00 | 0.00 | 0.00 | 3.56 |
7567 | 10874 | 1.732941 | AATTGCGGCGATGAACTGTA | 58.267 | 45.000 | 12.98 | 0.00 | 0.00 | 2.74 |
7570 | 10877 | 0.319986 | TGCGGCGATGAACTGTACAA | 60.320 | 50.000 | 12.98 | 0.00 | 0.00 | 2.41 |
7572 | 10879 | 1.195900 | GCGGCGATGAACTGTACAAAA | 59.804 | 47.619 | 12.98 | 0.00 | 0.00 | 2.44 |
7574 | 10881 | 2.478894 | CGGCGATGAACTGTACAAAACT | 59.521 | 45.455 | 0.00 | 0.00 | 0.00 | 2.66 |
7576 | 10883 | 4.219033 | GGCGATGAACTGTACAAAACTTG | 58.781 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 |
7577 | 10884 | 3.664025 | GCGATGAACTGTACAAAACTTGC | 59.336 | 43.478 | 0.00 | 0.00 | 0.00 | 4.01 |
7578 | 10885 | 4.788201 | GCGATGAACTGTACAAAACTTGCA | 60.788 | 41.667 | 0.00 | 0.00 | 0.00 | 4.08 |
7707 | 11158 | 2.258286 | GCAATGTTGTCCCCACGC | 59.742 | 61.111 | 0.00 | 0.00 | 0.00 | 5.34 |
7722 | 11173 | 1.153168 | ACGCGCTTAGGGCATTCAT | 60.153 | 52.632 | 20.69 | 0.00 | 41.67 | 2.57 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
10 | 12 | 1.396996 | ACCATGCGCTTTATGTTCGTC | 59.603 | 47.619 | 9.73 | 0.00 | 0.00 | 4.20 |
12 | 14 | 1.130373 | ACACCATGCGCTTTATGTTCG | 59.870 | 47.619 | 9.73 | 0.00 | 0.00 | 3.95 |
24 | 26 | 9.722056 | CTTTATTGAAACTTAGATACACCATGC | 57.278 | 33.333 | 0.00 | 0.00 | 0.00 | 4.06 |
27 | 29 | 9.226606 | CCACTTTATTGAAACTTAGATACACCA | 57.773 | 33.333 | 0.00 | 0.00 | 0.00 | 4.17 |
79 | 81 | 3.007290 | TCAAGAGTGACCCTTCATGAGTG | 59.993 | 47.826 | 0.00 | 0.00 | 33.11 | 3.51 |
81 | 83 | 3.969287 | TCAAGAGTGACCCTTCATGAG | 57.031 | 47.619 | 0.00 | 0.00 | 33.11 | 2.90 |
94 | 96 | 0.595095 | GTACGTGACGGGTCAAGAGT | 59.405 | 55.000 | 19.10 | 13.86 | 41.85 | 3.24 |
97 | 99 | 0.665369 | GGTGTACGTGACGGGTCAAG | 60.665 | 60.000 | 10.66 | 12.20 | 41.85 | 3.02 |
114 | 116 | 2.997986 | GTTGTCGTGTCGATAAATGGGT | 59.002 | 45.455 | 3.28 | 0.00 | 38.54 | 4.51 |
129 | 131 | 1.266989 | GCTTTGAGGAAAGGGTTGTCG | 59.733 | 52.381 | 0.00 | 0.00 | 39.29 | 4.35 |
137 | 139 | 4.488126 | TGTTGATTCGCTTTGAGGAAAG | 57.512 | 40.909 | 0.00 | 0.00 | 41.49 | 2.62 |
141 | 143 | 5.569059 | GTGTATTTGTTGATTCGCTTTGAGG | 59.431 | 40.000 | 0.00 | 0.00 | 0.00 | 3.86 |
150 | 152 | 4.776795 | AACGGGGTGTATTTGTTGATTC | 57.223 | 40.909 | 0.00 | 0.00 | 0.00 | 2.52 |
202 | 204 | 3.262420 | GAGATACCGTGTGATTGCAGTT | 58.738 | 45.455 | 0.00 | 0.00 | 0.00 | 3.16 |
204 | 206 | 2.892374 | TGAGATACCGTGTGATTGCAG | 58.108 | 47.619 | 0.00 | 0.00 | 0.00 | 4.41 |
205 | 207 | 3.261580 | CTTGAGATACCGTGTGATTGCA | 58.738 | 45.455 | 0.00 | 0.00 | 0.00 | 4.08 |
206 | 208 | 3.262420 | ACTTGAGATACCGTGTGATTGC | 58.738 | 45.455 | 0.00 | 0.00 | 0.00 | 3.56 |
207 | 209 | 4.929211 | TGAACTTGAGATACCGTGTGATTG | 59.071 | 41.667 | 0.00 | 0.00 | 0.00 | 2.67 |
210 | 219 | 4.202172 | TGTTGAACTTGAGATACCGTGTGA | 60.202 | 41.667 | 0.00 | 0.00 | 0.00 | 3.58 |
245 | 254 | 7.193595 | CCGGAGATTTTTGTTATCAATGGTAC | 58.806 | 38.462 | 0.00 | 0.00 | 33.32 | 3.34 |
247 | 256 | 5.394115 | GCCGGAGATTTTTGTTATCAATGGT | 60.394 | 40.000 | 5.05 | 0.00 | 33.32 | 3.55 |
250 | 259 | 5.679638 | GCTGCCGGAGATTTTTGTTATCAAT | 60.680 | 40.000 | 5.05 | 0.00 | 33.32 | 2.57 |
252 | 261 | 3.128589 | GCTGCCGGAGATTTTTGTTATCA | 59.871 | 43.478 | 5.05 | 0.00 | 0.00 | 2.15 |
253 | 262 | 3.489229 | GGCTGCCGGAGATTTTTGTTATC | 60.489 | 47.826 | 5.05 | 0.00 | 0.00 | 1.75 |
254 | 263 | 2.427095 | GGCTGCCGGAGATTTTTGTTAT | 59.573 | 45.455 | 5.05 | 0.00 | 0.00 | 1.89 |
255 | 264 | 1.816224 | GGCTGCCGGAGATTTTTGTTA | 59.184 | 47.619 | 5.05 | 0.00 | 0.00 | 2.41 |
256 | 265 | 0.603065 | GGCTGCCGGAGATTTTTGTT | 59.397 | 50.000 | 5.05 | 0.00 | 0.00 | 2.83 |
258 | 267 | 1.250154 | TGGGCTGCCGGAGATTTTTG | 61.250 | 55.000 | 13.40 | 0.00 | 0.00 | 2.44 |
259 | 268 | 0.541764 | TTGGGCTGCCGGAGATTTTT | 60.542 | 50.000 | 13.40 | 0.00 | 0.00 | 1.94 |
268 | 286 | 1.068194 | TCGTTAATTTTTGGGCTGCCG | 60.068 | 47.619 | 13.40 | 0.00 | 0.00 | 5.69 |
286 | 304 | 7.387948 | ACGGAATAATTCCTCATTATTTCCTCG | 59.612 | 37.037 | 0.00 | 6.55 | 44.81 | 4.63 |
288 | 306 | 8.217799 | TGACGGAATAATTCCTCATTATTTCCT | 58.782 | 33.333 | 0.00 | 0.00 | 44.81 | 3.36 |
289 | 307 | 8.391075 | TGACGGAATAATTCCTCATTATTTCC | 57.609 | 34.615 | 0.00 | 0.00 | 44.81 | 3.13 |
300 | 318 | 5.859495 | AGAGGAGATTGACGGAATAATTCC | 58.141 | 41.667 | 0.00 | 0.00 | 46.62 | 3.01 |
301 | 319 | 6.516718 | TGAGAGGAGATTGACGGAATAATTC | 58.483 | 40.000 | 0.00 | 0.00 | 0.00 | 2.17 |
302 | 320 | 6.485830 | TGAGAGGAGATTGACGGAATAATT | 57.514 | 37.500 | 0.00 | 0.00 | 0.00 | 1.40 |
354 | 373 | 8.934825 | GCTAATTTTGGCAATGTGATCTTTTTA | 58.065 | 29.630 | 0.00 | 0.00 | 34.50 | 1.52 |
440 | 459 | 1.210538 | TGCAATCAGATCAGGAGGCT | 58.789 | 50.000 | 0.00 | 0.00 | 0.00 | 4.58 |
441 | 460 | 1.674962 | GTTGCAATCAGATCAGGAGGC | 59.325 | 52.381 | 0.59 | 1.62 | 0.00 | 4.70 |
442 | 461 | 1.938577 | CGTTGCAATCAGATCAGGAGG | 59.061 | 52.381 | 0.59 | 0.00 | 0.00 | 4.30 |
443 | 462 | 1.329906 | GCGTTGCAATCAGATCAGGAG | 59.670 | 52.381 | 0.59 | 0.00 | 0.00 | 3.69 |
444 | 463 | 1.372582 | GCGTTGCAATCAGATCAGGA | 58.627 | 50.000 | 0.59 | 0.00 | 0.00 | 3.86 |
445 | 464 | 0.027194 | CGCGTTGCAATCAGATCAGG | 59.973 | 55.000 | 0.59 | 0.00 | 0.00 | 3.86 |
446 | 465 | 0.027194 | CCGCGTTGCAATCAGATCAG | 59.973 | 55.000 | 0.59 | 0.00 | 0.00 | 2.90 |
447 | 466 | 1.980951 | GCCGCGTTGCAATCAGATCA | 61.981 | 55.000 | 0.59 | 0.00 | 0.00 | 2.92 |
448 | 467 | 1.297893 | GCCGCGTTGCAATCAGATC | 60.298 | 57.895 | 0.59 | 0.00 | 0.00 | 2.75 |
449 | 468 | 2.793946 | GCCGCGTTGCAATCAGAT | 59.206 | 55.556 | 0.59 | 0.00 | 0.00 | 2.90 |
450 | 469 | 3.787676 | CGCCGCGTTGCAATCAGA | 61.788 | 61.111 | 0.59 | 0.00 | 0.00 | 3.27 |
451 | 470 | 3.787676 | TCGCCGCGTTGCAATCAG | 61.788 | 61.111 | 13.39 | 0.00 | 0.00 | 2.90 |
452 | 471 | 4.083600 | GTCGCCGCGTTGCAATCA | 62.084 | 61.111 | 13.39 | 0.00 | 0.00 | 2.57 |
453 | 472 | 4.811761 | GGTCGCCGCGTTGCAATC | 62.812 | 66.667 | 13.39 | 0.00 | 0.00 | 2.67 |
461 | 480 | 4.320928 | TTTTTGCAGGTCGCCGCG | 62.321 | 61.111 | 6.39 | 6.39 | 41.33 | 6.46 |
462 | 481 | 2.729491 | GTTTTTGCAGGTCGCCGC | 60.729 | 61.111 | 0.00 | 6.03 | 41.33 | 6.53 |
463 | 482 | 2.050442 | GGTTTTTGCAGGTCGCCG | 60.050 | 61.111 | 0.00 | 0.00 | 41.33 | 6.46 |
464 | 483 | 2.022240 | TTGGGTTTTTGCAGGTCGCC | 62.022 | 55.000 | 0.00 | 0.00 | 41.33 | 5.54 |
465 | 484 | 0.874175 | GTTGGGTTTTTGCAGGTCGC | 60.874 | 55.000 | 0.00 | 0.00 | 42.89 | 5.19 |
466 | 485 | 0.249280 | GGTTGGGTTTTTGCAGGTCG | 60.249 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
467 | 486 | 0.827368 | TGGTTGGGTTTTTGCAGGTC | 59.173 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
468 | 487 | 0.829990 | CTGGTTGGGTTTTTGCAGGT | 59.170 | 50.000 | 0.00 | 0.00 | 0.00 | 4.00 |
485 | 504 | 2.028748 | CCTTGGCTGGAAATGGAAACTG | 60.029 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
509 | 533 | 1.933247 | TTGAGGCCGCAAAGTTTTTG | 58.067 | 45.000 | 20.47 | 0.00 | 0.00 | 2.44 |
553 | 587 | 2.435234 | CGAACGGCCGGGATTTGA | 60.435 | 61.111 | 31.76 | 0.00 | 0.00 | 2.69 |
630 | 664 | 1.657804 | GTGGGGGAAGAAGAGAAGGA | 58.342 | 55.000 | 0.00 | 0.00 | 0.00 | 3.36 |
734 | 777 | 2.824041 | CAGACCGCCGGAAATGGG | 60.824 | 66.667 | 11.71 | 0.00 | 0.00 | 4.00 |
889 | 950 | 1.371558 | CGCAGCCTTATCCCCCTAC | 59.628 | 63.158 | 0.00 | 0.00 | 0.00 | 3.18 |
920 | 981 | 2.668945 | CACCAACCAAACAAACGAAACC | 59.331 | 45.455 | 0.00 | 0.00 | 0.00 | 3.27 |
922 | 983 | 3.318017 | CACACCAACCAAACAAACGAAA | 58.682 | 40.909 | 0.00 | 0.00 | 0.00 | 3.46 |
935 | 996 | 2.520741 | CCCCACCACCACACCAAC | 60.521 | 66.667 | 0.00 | 0.00 | 0.00 | 3.77 |
986 | 1047 | 0.319900 | CACCATCGGATCGATCACCC | 60.320 | 60.000 | 25.93 | 9.55 | 45.19 | 4.61 |
1158 | 1234 | 3.695606 | TCGTCCAGCAGCACCTCC | 61.696 | 66.667 | 0.00 | 0.00 | 0.00 | 4.30 |
1479 | 1749 | 7.224297 | ACCAATACCTACTAATAACAGCATGG | 58.776 | 38.462 | 0.00 | 0.00 | 43.62 | 3.66 |
1486 | 1756 | 6.282930 | TGCCGAACCAATACCTACTAATAAC | 58.717 | 40.000 | 0.00 | 0.00 | 0.00 | 1.89 |
1493 | 1763 | 2.277084 | CACTGCCGAACCAATACCTAC | 58.723 | 52.381 | 0.00 | 0.00 | 0.00 | 3.18 |
1494 | 1764 | 1.406341 | GCACTGCCGAACCAATACCTA | 60.406 | 52.381 | 0.00 | 0.00 | 0.00 | 3.08 |
1495 | 1765 | 0.676782 | GCACTGCCGAACCAATACCT | 60.677 | 55.000 | 0.00 | 0.00 | 0.00 | 3.08 |
1496 | 1766 | 0.676782 | AGCACTGCCGAACCAATACC | 60.677 | 55.000 | 0.00 | 0.00 | 0.00 | 2.73 |
1507 | 1777 | 1.197721 | GTCATAACACACAGCACTGCC | 59.802 | 52.381 | 0.00 | 0.00 | 0.00 | 4.85 |
1540 | 1810 | 1.543429 | CCCAGTGTTTCCAGTCCACTC | 60.543 | 57.143 | 0.00 | 0.00 | 37.34 | 3.51 |
1570 | 1840 | 2.028476 | TGGACTATTCAGTTGACCACCG | 60.028 | 50.000 | 0.00 | 0.00 | 34.21 | 4.94 |
1572 | 1842 | 3.008049 | ACCTGGACTATTCAGTTGACCAC | 59.992 | 47.826 | 0.00 | 0.00 | 34.21 | 4.16 |
1685 | 1968 | 7.347252 | ACCAAGACTAGACTCATGATGTACTA | 58.653 | 38.462 | 0.00 | 0.00 | 0.00 | 1.82 |
1686 | 1969 | 6.191315 | ACCAAGACTAGACTCATGATGTACT | 58.809 | 40.000 | 0.00 | 0.00 | 0.00 | 2.73 |
1687 | 1970 | 6.320164 | AGACCAAGACTAGACTCATGATGTAC | 59.680 | 42.308 | 0.00 | 0.00 | 0.00 | 2.90 |
1699 | 1982 | 2.028658 | CAGCTGCAAGACCAAGACTAGA | 60.029 | 50.000 | 0.00 | 0.00 | 34.07 | 2.43 |
1709 | 1992 | 4.790140 | CGATAAATCAAACAGCTGCAAGAC | 59.210 | 41.667 | 15.27 | 0.00 | 34.07 | 3.01 |
1741 | 2025 | 1.072806 | TCACACTGAGAAGCATGCCTT | 59.927 | 47.619 | 15.66 | 8.13 | 36.19 | 4.35 |
1770 | 2054 | 7.124298 | TGAGTACAGACCATTCCTATATATGCC | 59.876 | 40.741 | 0.00 | 0.00 | 0.00 | 4.40 |
1786 | 2078 | 3.452474 | CCTGCAAGCTATGAGTACAGAC | 58.548 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
1809 | 2101 | 4.245660 | CTGAATAGCGTCTCTTTGTTCCA | 58.754 | 43.478 | 0.00 | 0.00 | 0.00 | 3.53 |
1810 | 2102 | 4.246458 | ACTGAATAGCGTCTCTTTGTTCC | 58.754 | 43.478 | 0.00 | 0.00 | 0.00 | 3.62 |
1812 | 2104 | 5.758296 | TCAAACTGAATAGCGTCTCTTTGTT | 59.242 | 36.000 | 0.00 | 0.00 | 0.00 | 2.83 |
1813 | 2105 | 5.297547 | TCAAACTGAATAGCGTCTCTTTGT | 58.702 | 37.500 | 0.00 | 0.00 | 0.00 | 2.83 |
1814 | 2106 | 5.406780 | ACTCAAACTGAATAGCGTCTCTTTG | 59.593 | 40.000 | 0.00 | 0.00 | 0.00 | 2.77 |
1815 | 2107 | 5.406780 | CACTCAAACTGAATAGCGTCTCTTT | 59.593 | 40.000 | 0.00 | 0.00 | 0.00 | 2.52 |
1819 | 2113 | 4.258702 | ACACTCAAACTGAATAGCGTCT | 57.741 | 40.909 | 0.00 | 0.00 | 0.00 | 4.18 |
1821 | 2115 | 4.377021 | TCAACACTCAAACTGAATAGCGT | 58.623 | 39.130 | 0.00 | 0.00 | 0.00 | 5.07 |
1822 | 2116 | 4.990543 | TCAACACTCAAACTGAATAGCG | 57.009 | 40.909 | 0.00 | 0.00 | 0.00 | 4.26 |
1853 | 2147 | 7.893124 | ACTGGCTGAGAATTCATAAATCAAT | 57.107 | 32.000 | 8.44 | 0.00 | 31.68 | 2.57 |
1854 | 2148 | 7.707624 | AACTGGCTGAGAATTCATAAATCAA | 57.292 | 32.000 | 8.44 | 0.00 | 31.68 | 2.57 |
1859 | 2153 | 7.765695 | AGAAAAACTGGCTGAGAATTCATAA | 57.234 | 32.000 | 8.44 | 0.00 | 31.68 | 1.90 |
1899 | 2195 | 3.454812 | AGTTACAATAACCCATCCGAGCT | 59.545 | 43.478 | 0.00 | 0.00 | 0.00 | 4.09 |
1903 | 2199 | 6.764085 | TGATAACAGTTACAATAACCCATCCG | 59.236 | 38.462 | 0.00 | 0.00 | 0.00 | 4.18 |
1933 | 2229 | 9.459640 | CAATATGAAAAGGATATTCAGCAACTG | 57.540 | 33.333 | 0.00 | 0.00 | 39.92 | 3.16 |
1938 | 2234 | 8.295288 | CCAGTCAATATGAAAAGGATATTCAGC | 58.705 | 37.037 | 0.00 | 0.00 | 39.92 | 4.26 |
1947 | 2243 | 7.718314 | TCTCATGATCCAGTCAATATGAAAAGG | 59.282 | 37.037 | 0.00 | 0.00 | 40.97 | 3.11 |
1954 | 2250 | 5.236282 | CGCTTCTCATGATCCAGTCAATAT | 58.764 | 41.667 | 0.00 | 0.00 | 40.97 | 1.28 |
1959 | 2255 | 1.202510 | AGCGCTTCTCATGATCCAGTC | 60.203 | 52.381 | 2.64 | 0.00 | 0.00 | 3.51 |
1962 | 2258 | 0.826062 | TCAGCGCTTCTCATGATCCA | 59.174 | 50.000 | 7.50 | 0.00 | 0.00 | 3.41 |
1970 | 2266 | 0.739112 | CAGGAACCTCAGCGCTTCTC | 60.739 | 60.000 | 7.50 | 0.00 | 0.00 | 2.87 |
1977 | 2273 | 2.333688 | GGTTATCCAGGAACCTCAGC | 57.666 | 55.000 | 3.23 | 0.00 | 42.68 | 4.26 |
1998 | 2294 | 9.863650 | ATTTCTCATGATCCAGTAAATTCAGAT | 57.136 | 29.630 | 0.00 | 0.00 | 0.00 | 2.90 |
2025 | 2321 | 6.706270 | TGAAACATTGTGAAGACCTAGAGAAC | 59.294 | 38.462 | 0.00 | 0.00 | 0.00 | 3.01 |
2164 | 2683 | 4.377897 | AGTTTGGAAGGTTCGTTCTACTG | 58.622 | 43.478 | 5.47 | 0.00 | 0.00 | 2.74 |
2189 | 2708 | 5.810080 | AAGTATATACTGGTGAGGAAGCC | 57.190 | 43.478 | 16.11 | 0.00 | 36.50 | 4.35 |
2190 | 2709 | 7.527568 | AGTAAGTATATACTGGTGAGGAAGC | 57.472 | 40.000 | 16.11 | 0.00 | 36.50 | 3.86 |
2194 | 2713 | 8.466617 | AGTGAAGTAAGTATATACTGGTGAGG | 57.533 | 38.462 | 16.11 | 0.00 | 36.28 | 3.86 |
2207 | 2726 | 9.201989 | ACATGATCAGGAATAGTGAAGTAAGTA | 57.798 | 33.333 | 15.42 | 0.00 | 0.00 | 2.24 |
2208 | 2727 | 8.083828 | ACATGATCAGGAATAGTGAAGTAAGT | 57.916 | 34.615 | 15.42 | 0.00 | 0.00 | 2.24 |
2250 | 3007 | 2.292016 | CGCAGTTGTAACATGGAACCAA | 59.708 | 45.455 | 0.00 | 0.00 | 0.00 | 3.67 |
2283 | 3040 | 9.793259 | AAACTGAATAGAAATAGAACTGTCCAA | 57.207 | 29.630 | 0.00 | 0.00 | 0.00 | 3.53 |
2301 | 3201 | 6.441274 | CGCCTTGCATAATATCAAACTGAAT | 58.559 | 36.000 | 0.00 | 0.00 | 0.00 | 2.57 |
2310 | 3603 | 4.878397 | AGATAAGCCGCCTTGCATAATATC | 59.122 | 41.667 | 0.00 | 0.00 | 32.47 | 1.63 |
2420 | 3790 | 4.019174 | GCATTCCAGAAGAATCCAGGAAA | 58.981 | 43.478 | 0.00 | 0.00 | 43.63 | 3.13 |
2469 | 3839 | 2.817424 | CTGCAGGCCGCTCATAGA | 59.183 | 61.111 | 18.14 | 0.00 | 43.06 | 1.98 |
2546 | 3916 | 2.307098 | AGGCCCCAGAATAGATGCATAC | 59.693 | 50.000 | 0.00 | 0.00 | 0.00 | 2.39 |
2567 | 3937 | 3.449018 | GGGATGCACTTCTAGAGAGTGAA | 59.551 | 47.826 | 26.05 | 20.59 | 35.75 | 3.18 |
2603 | 3973 | 1.640917 | GACTTGGTACCCTCCTCACA | 58.359 | 55.000 | 10.07 | 0.00 | 0.00 | 3.58 |
2618 | 3988 | 4.021925 | GGAGGCAGGCACGGACTT | 62.022 | 66.667 | 0.00 | 0.00 | 40.62 | 3.01 |
2705 | 4075 | 0.947244 | CAGGTTCACCAACAGCAGAC | 59.053 | 55.000 | 0.00 | 0.00 | 38.89 | 3.51 |
2774 | 4144 | 1.202758 | TCCATAGCTTGCCCATTACCG | 60.203 | 52.381 | 0.00 | 0.00 | 0.00 | 4.02 |
3086 | 4468 | 3.709653 | CTCCATTGTAGCCCAGGTAGTTA | 59.290 | 47.826 | 0.00 | 0.00 | 0.00 | 2.24 |
3095 | 4477 | 2.290960 | ACTTCCAACTCCATTGTAGCCC | 60.291 | 50.000 | 0.00 | 0.00 | 36.47 | 5.19 |
3134 | 4516 | 2.416566 | CGGATCGATAGGCATCTGAAGG | 60.417 | 54.545 | 0.00 | 0.00 | 0.00 | 3.46 |
3554 | 4948 | 1.601663 | CCCGCTATTTCAGAGAGCTCG | 60.602 | 57.143 | 8.37 | 0.00 | 33.91 | 5.03 |
3572 | 4966 | 0.605319 | TGAACTCAACGACATGCCCC | 60.605 | 55.000 | 0.00 | 0.00 | 0.00 | 5.80 |
3636 | 5033 | 9.840427 | ACTTACAAATCATTACAGTTTACATGC | 57.160 | 29.630 | 0.00 | 0.00 | 0.00 | 4.06 |
3651 | 5048 | 7.359595 | GCTTGTGTGATACAACTTACAAATCA | 58.640 | 34.615 | 0.00 | 0.00 | 44.07 | 2.57 |
3652 | 5049 | 6.519761 | CGCTTGTGTGATACAACTTACAAATC | 59.480 | 38.462 | 0.00 | 0.00 | 44.07 | 2.17 |
3653 | 5050 | 6.370593 | CGCTTGTGTGATACAACTTACAAAT | 58.629 | 36.000 | 0.00 | 0.00 | 44.07 | 2.32 |
3654 | 5051 | 5.743467 | CGCTTGTGTGATACAACTTACAAA | 58.257 | 37.500 | 0.00 | 0.00 | 44.07 | 2.83 |
3655 | 5052 | 4.319190 | GCGCTTGTGTGATACAACTTACAA | 60.319 | 41.667 | 0.00 | 0.00 | 44.07 | 2.41 |
3656 | 5053 | 3.185594 | GCGCTTGTGTGATACAACTTACA | 59.814 | 43.478 | 0.00 | 0.00 | 44.07 | 2.41 |
3657 | 5054 | 3.185594 | TGCGCTTGTGTGATACAACTTAC | 59.814 | 43.478 | 9.73 | 0.00 | 44.07 | 2.34 |
3658 | 5055 | 3.185594 | GTGCGCTTGTGTGATACAACTTA | 59.814 | 43.478 | 9.73 | 0.00 | 44.07 | 2.24 |
3659 | 5056 | 2.032030 | GTGCGCTTGTGTGATACAACTT | 60.032 | 45.455 | 9.73 | 0.00 | 44.07 | 2.66 |
3660 | 5057 | 1.531149 | GTGCGCTTGTGTGATACAACT | 59.469 | 47.619 | 9.73 | 0.00 | 44.07 | 3.16 |
3661 | 5058 | 1.399727 | GGTGCGCTTGTGTGATACAAC | 60.400 | 52.381 | 9.73 | 0.00 | 44.07 | 3.32 |
3662 | 5059 | 0.871722 | GGTGCGCTTGTGTGATACAA | 59.128 | 50.000 | 9.73 | 0.00 | 46.62 | 2.41 |
3663 | 5060 | 0.250081 | TGGTGCGCTTGTGTGATACA | 60.250 | 50.000 | 9.73 | 0.00 | 37.56 | 2.29 |
3664 | 5061 | 1.086696 | ATGGTGCGCTTGTGTGATAC | 58.913 | 50.000 | 9.73 | 0.00 | 0.00 | 2.24 |
3665 | 5062 | 2.276201 | GTATGGTGCGCTTGTGTGATA | 58.724 | 47.619 | 9.73 | 0.00 | 0.00 | 2.15 |
3666 | 5063 | 1.086696 | GTATGGTGCGCTTGTGTGAT | 58.913 | 50.000 | 9.73 | 0.00 | 0.00 | 3.06 |
3667 | 5064 | 0.250081 | TGTATGGTGCGCTTGTGTGA | 60.250 | 50.000 | 9.73 | 0.00 | 0.00 | 3.58 |
3671 | 5068 | 2.465860 | TAACTGTATGGTGCGCTTGT | 57.534 | 45.000 | 9.73 | 0.00 | 0.00 | 3.16 |
3676 | 5073 | 6.417191 | AAGTAACAATAACTGTATGGTGCG | 57.583 | 37.500 | 0.00 | 0.00 | 37.23 | 5.34 |
3680 | 5077 | 8.922058 | ACTACGAAGTAACAATAACTGTATGG | 57.078 | 34.615 | 0.00 | 0.00 | 45.13 | 2.74 |
3691 | 5088 | 6.707608 | TCTGACTACTGACTACGAAGTAACAA | 59.292 | 38.462 | 0.00 | 0.00 | 45.13 | 2.83 |
3701 | 5098 | 7.562454 | AGAAATAGCTCTGACTACTGACTAC | 57.438 | 40.000 | 0.00 | 0.00 | 0.00 | 2.73 |
3708 | 5105 | 6.481644 | CCCATGAAAGAAATAGCTCTGACTAC | 59.518 | 42.308 | 0.00 | 0.00 | 0.00 | 2.73 |
3714 | 5111 | 5.819991 | TGTTCCCATGAAAGAAATAGCTCT | 58.180 | 37.500 | 0.00 | 0.00 | 30.79 | 4.09 |
3728 | 5125 | 1.766494 | TGCTATGCCTTGTTCCCATG | 58.234 | 50.000 | 0.00 | 0.00 | 0.00 | 3.66 |
3783 | 5180 | 6.009589 | TCCTCATTTTTGCTCAGTTTATCCA | 58.990 | 36.000 | 0.00 | 0.00 | 0.00 | 3.41 |
3830 | 5228 | 5.246203 | TCACTAGGCTGTAGAAACAATCTGT | 59.754 | 40.000 | 0.00 | 0.00 | 39.30 | 3.41 |
3858 | 5256 | 7.398047 | TGCACACTAAGGGAGTACTCTTAATAA | 59.602 | 37.037 | 21.88 | 3.44 | 38.43 | 1.40 |
3867 | 5265 | 4.058817 | GCATATGCACACTAAGGGAGTAC | 58.941 | 47.826 | 22.84 | 0.00 | 41.59 | 2.73 |
3907 | 5305 | 3.243704 | TGTGCTTTCTGTTGGGTATTTGC | 60.244 | 43.478 | 0.00 | 0.00 | 0.00 | 3.68 |
3942 | 5340 | 9.270576 | CTTTTCATTATTTGAGTGATCAGAACG | 57.729 | 33.333 | 0.00 | 0.00 | 35.27 | 3.95 |
4017 | 5419 | 0.035152 | ACATGCGCATTTGAGAGGGA | 60.035 | 50.000 | 22.81 | 0.00 | 0.00 | 4.20 |
4030 | 5432 | 3.285982 | TGTGCACCCACACATGCG | 61.286 | 61.111 | 15.69 | 0.00 | 46.51 | 4.73 |
4078 | 5480 | 8.964150 | GTGTTCCACACTACAAAAATATGTTTC | 58.036 | 33.333 | 0.00 | 0.00 | 45.27 | 2.78 |
4087 | 5548 | 2.357075 | TGCGTGTTCCACACTACAAAA | 58.643 | 42.857 | 5.53 | 0.00 | 46.46 | 2.44 |
4110 | 5571 | 3.503365 | AGGTGCCATAATGCATTATGCT | 58.497 | 40.909 | 37.65 | 29.46 | 45.11 | 3.79 |
4126 | 5587 | 2.231235 | CACTGGGGATTTTGTTAGGTGC | 59.769 | 50.000 | 0.00 | 0.00 | 0.00 | 5.01 |
4181 | 5722 | 1.975660 | GGTCAGTACCCTGTGCAAAA | 58.024 | 50.000 | 0.00 | 0.00 | 40.21 | 2.44 |
4818 | 6710 | 2.814336 | GCTAGTGGAAAGAGGTGGTTTG | 59.186 | 50.000 | 0.00 | 0.00 | 0.00 | 2.93 |
4897 | 6791 | 8.922676 | CGACAGTTTACAAGTTAATCTGTACAT | 58.077 | 33.333 | 0.00 | 0.00 | 37.50 | 2.29 |
5031 | 7304 | 6.910972 | CACATGTATCATCAAATGACTCAAGC | 59.089 | 38.462 | 0.00 | 0.00 | 43.01 | 4.01 |
5341 | 7629 | 7.468141 | ACATGATAATGAGCGAGGTAGATTA | 57.532 | 36.000 | 0.00 | 0.00 | 0.00 | 1.75 |
5366 | 7656 | 2.514458 | CCAGCACCCTCTGGTAATTT | 57.486 | 50.000 | 1.80 | 0.00 | 45.57 | 1.82 |
5549 | 7839 | 7.523219 | CACAAAATAGCCGACTACAAAATACA | 58.477 | 34.615 | 0.00 | 0.00 | 0.00 | 2.29 |
5550 | 7840 | 6.468000 | GCACAAAATAGCCGACTACAAAATAC | 59.532 | 38.462 | 0.00 | 0.00 | 0.00 | 1.89 |
5552 | 7842 | 5.048364 | TGCACAAAATAGCCGACTACAAAAT | 60.048 | 36.000 | 0.00 | 0.00 | 0.00 | 1.82 |
5553 | 7843 | 4.276183 | TGCACAAAATAGCCGACTACAAAA | 59.724 | 37.500 | 0.00 | 0.00 | 0.00 | 2.44 |
5659 | 7967 | 8.962679 | ACCTAATATGCGGAATAAAAAGAAACA | 58.037 | 29.630 | 0.00 | 0.00 | 0.00 | 2.83 |
5863 | 8507 | 6.864685 | TGTGTAAAGTCCACGTCTTAGTAATG | 59.135 | 38.462 | 0.00 | 0.00 | 35.56 | 1.90 |
6025 | 8694 | 2.256117 | AAGCAAACGGTAAGCAGTCT | 57.744 | 45.000 | 7.36 | 0.00 | 0.00 | 3.24 |
6535 | 9214 | 2.486982 | CAGGTGAGCTTTGATCCTTGTG | 59.513 | 50.000 | 0.00 | 0.00 | 0.00 | 3.33 |
6647 | 9326 | 5.100344 | AGATCTTCATGCTGAATCTGTGT | 57.900 | 39.130 | 0.00 | 0.00 | 35.59 | 3.72 |
6878 | 10017 | 2.297315 | TGTACACTCTCTCCAGTGCAAG | 59.703 | 50.000 | 0.00 | 0.00 | 46.81 | 4.01 |
7227 | 10385 | 5.867716 | AGACGACACACTCCATTAATACAAC | 59.132 | 40.000 | 0.00 | 0.00 | 0.00 | 3.32 |
7301 | 10471 | 7.031226 | TGAATCTTGGTGAGAGAAAAACTTG | 57.969 | 36.000 | 0.00 | 0.00 | 37.93 | 3.16 |
7342 | 10517 | 6.425210 | ACAGATATGAGTTATGCTTGGCTA | 57.575 | 37.500 | 0.00 | 0.00 | 0.00 | 3.93 |
7343 | 10518 | 5.301835 | ACAGATATGAGTTATGCTTGGCT | 57.698 | 39.130 | 0.00 | 0.00 | 0.00 | 4.75 |
7381 | 10556 | 4.079253 | TCTGATATGCATAGCCTACACGA | 58.921 | 43.478 | 18.79 | 3.85 | 0.00 | 4.35 |
7472 | 10779 | 4.700268 | CTGTGCACAGCCAAACATATTA | 57.300 | 40.909 | 32.39 | 0.00 | 37.15 | 0.98 |
7532 | 10839 | 5.324697 | CCGCAATTTTAGCTCAGTTACTTC | 58.675 | 41.667 | 0.00 | 0.00 | 0.00 | 3.01 |
7553 | 10860 | 2.478894 | AGTTTTGTACAGTTCATCGCCG | 59.521 | 45.455 | 0.00 | 0.00 | 0.00 | 6.46 |
7567 | 10874 | 7.977853 | GGATATGATCTCAAATGCAAGTTTTGT | 59.022 | 33.333 | 10.26 | 0.00 | 35.90 | 2.83 |
7570 | 10877 | 7.649533 | TGGATATGATCTCAAATGCAAGTTT | 57.350 | 32.000 | 0.00 | 0.00 | 0.00 | 2.66 |
7572 | 10879 | 7.649533 | TTTGGATATGATCTCAAATGCAAGT | 57.350 | 32.000 | 0.00 | 0.00 | 32.40 | 3.16 |
7574 | 10881 | 8.070034 | AGTTTTGGATATGATCTCAAATGCAA | 57.930 | 30.769 | 0.00 | 0.00 | 33.03 | 4.08 |
7576 | 10883 | 7.042925 | GCAAGTTTTGGATATGATCTCAAATGC | 60.043 | 37.037 | 0.00 | 0.00 | 32.59 | 3.56 |
7577 | 10884 | 7.977293 | TGCAAGTTTTGGATATGATCTCAAATG | 59.023 | 33.333 | 0.00 | 0.00 | 33.03 | 2.32 |
7578 | 10885 | 8.070034 | TGCAAGTTTTGGATATGATCTCAAAT | 57.930 | 30.769 | 0.00 | 0.00 | 33.03 | 2.32 |
7632 | 11083 | 3.964031 | TGTTGGGGCTGTGTTTCTTAAAT | 59.036 | 39.130 | 0.00 | 0.00 | 0.00 | 1.40 |
7722 | 11173 | 2.445145 | TGAGTCTTGGGGGTTGATTTGA | 59.555 | 45.455 | 0.00 | 0.00 | 0.00 | 2.69 |
![](/static/images/cyverse_long.png)
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.