Multiple sequence alignment - TraesCS1A01G029100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G029100 chr1A 100.000 6501 0 0 1 6501 13662300 13668800 0.000000e+00 12006.0
1 TraesCS1A01G029100 chr1A 92.360 3390 217 19 3133 6501 13415613 13418981 0.000000e+00 4787.0
2 TraesCS1A01G029100 chr1A 90.210 2574 216 16 2935 5494 22614667 22612116 0.000000e+00 3325.0
3 TraesCS1A01G029100 chr1A 86.621 2803 274 52 2657 5377 12589705 12586922 0.000000e+00 3005.0
4 TraesCS1A01G029100 chr1A 89.463 2363 225 16 3239 5586 13571262 13573615 0.000000e+00 2963.0
5 TraesCS1A01G029100 chr1A 86.282 2719 309 44 2935 5631 13454442 13457118 0.000000e+00 2896.0
6 TraesCS1A01G029100 chr1A 88.307 2386 251 22 3239 5609 13349038 13351410 0.000000e+00 2835.0
7 TraesCS1A01G029100 chr1A 92.201 936 50 3 980 1892 22616061 22615126 0.000000e+00 1303.0
8 TraesCS1A01G029100 chr1A 85.499 1062 124 18 845 1886 13313956 13315007 0.000000e+00 1081.0
9 TraesCS1A01G029100 chr1A 84.708 1079 136 13 841 1897 12591014 12589943 0.000000e+00 1051.0
10 TraesCS1A01G029100 chr1A 83.155 932 141 12 995 1918 13414043 13414966 0.000000e+00 837.0
11 TraesCS1A01G029100 chr1A 80.312 1026 170 19 914 1918 13569449 13570463 0.000000e+00 747.0
12 TraesCS1A01G029100 chr1A 82.736 753 117 7 1177 1918 12571053 12570303 0.000000e+00 658.0
13 TraesCS1A01G029100 chr1A 92.201 359 14 4 2595 2946 22615041 22614690 4.530000e-136 496.0
14 TraesCS1A01G029100 chr1A 88.974 390 33 6 1 382 13313153 13313540 2.120000e-129 473.0
15 TraesCS1A01G029100 chr1A 90.390 333 31 1 217 549 13568421 13568752 2.780000e-118 436.0
16 TraesCS1A01G029100 chr1A 88.184 347 30 8 204 542 13452522 13452865 2.820000e-108 403.0
17 TraesCS1A01G029100 chr1A 88.889 261 18 3 5400 5650 12586859 12586600 1.760000e-80 311.0
18 TraesCS1A01G029100 chr1A 85.714 308 23 2 226 533 12591593 12591307 8.190000e-79 305.0
19 TraesCS1A01G029100 chr1A 89.252 214 14 2 632 836 13313672 13313885 6.470000e-65 259.0
20 TraesCS1A01G029100 chr1A 81.928 332 27 12 74 396 12591953 12591646 3.890000e-62 250.0
21 TraesCS1A01G029100 chr1A 86.792 212 10 2 632 836 12591262 12591062 3.050000e-53 220.0
22 TraesCS1A01G029100 chr1A 80.753 239 17 12 5710 5928 12717759 12717530 6.750000e-35 159.0
23 TraesCS1A01G029100 chr1A 90.722 97 8 1 5832 5928 12585381 12585286 1.900000e-25 128.0
24 TraesCS1A01G029100 chr1A 89.000 100 7 1 661 756 13452883 13452982 3.180000e-23 121.0
25 TraesCS1A01G029100 chr1A 79.641 167 23 7 6284 6449 13352578 13352734 6.890000e-20 110.0
26 TraesCS1A01G029100 chr1A 95.238 42 1 1 1977 2017 13664234 13664275 1.510000e-06 65.8
27 TraesCS1A01G029100 chr1A 95.238 42 1 1 1935 1976 13664276 13664316 1.510000e-06 65.8
28 TraesCS1A01G029100 chr1D 88.679 2747 276 15 2935 5650 11178204 11180946 0.000000e+00 3317.0
29 TraesCS1A01G029100 chr1D 86.672 2536 315 11 3134 5650 11319577 11322108 0.000000e+00 2789.0
30 TraesCS1A01G029100 chr1D 86.733 2495 277 27 3134 5584 11455582 11458066 0.000000e+00 2724.0
31 TraesCS1A01G029100 chr1D 87.007 2432 285 20 3085 5498 11289601 11292019 0.000000e+00 2712.0
32 TraesCS1A01G029100 chr1D 94.540 1044 46 7 839 1874 11453757 11454797 0.000000e+00 1602.0
33 TraesCS1A01G029100 chr1D 82.609 1081 162 17 839 1897 11176880 11177956 0.000000e+00 931.0
34 TraesCS1A01G029100 chr1D 82.315 933 148 11 997 1918 11288059 11288985 0.000000e+00 793.0
35 TraesCS1A01G029100 chr1D 80.724 1022 170 18 914 1918 11273030 11274041 0.000000e+00 771.0
36 TraesCS1A01G029100 chr1D 84.135 624 74 7 1974 2595 11454857 11455457 1.220000e-161 580.0
37 TraesCS1A01G029100 chr1D 85.766 555 39 15 5636 6152 11458802 11459354 9.530000e-153 551.0
38 TraesCS1A01G029100 chr1D 86.890 328 38 4 216 539 11176282 11176608 4.790000e-96 363.0
39 TraesCS1A01G029100 chr1D 91.221 262 15 5 1 254 11451698 11451959 3.730000e-92 350.0
40 TraesCS1A01G029100 chr1D 83.590 390 28 9 416 796 11451992 11452354 3.760000e-87 333.0
41 TraesCS1A01G029100 chr1D 84.136 353 23 12 1 344 11453268 11453596 1.760000e-80 311.0
42 TraesCS1A01G029100 chr1D 76.309 401 54 20 5710 6079 11182002 11182392 6.700000e-40 176.0
43 TraesCS1A01G029100 chr1D 83.537 164 8 4 646 800 11176643 11176796 1.140000e-27 135.0
44 TraesCS1A01G029100 chr1D 79.459 185 17 10 5763 5928 11292633 11292815 1.920000e-20 111.0
45 TraesCS1A01G029100 chr1D 84.314 102 9 3 840 937 11272578 11272676 6.940000e-15 93.5
46 TraesCS1A01G029100 chr1D 88.889 63 7 0 6032 6094 11280978 11281040 1.940000e-10 78.7
47 TraesCS1A01G029100 chr1B 88.079 2441 259 18 2946 5362 16857802 16860234 0.000000e+00 2867.0
48 TraesCS1A01G029100 chr1B 86.357 2580 298 31 2945 5502 16891622 16894169 0.000000e+00 2765.0
49 TraesCS1A01G029100 chr1B 81.402 984 164 11 931 1897 16529960 16530941 0.000000e+00 785.0
50 TraesCS1A01G029100 chr1B 81.393 919 147 13 998 1897 16856397 16857310 0.000000e+00 728.0
51 TraesCS1A01G029100 chr1B 80.895 916 154 11 931 1831 16518177 16519086 0.000000e+00 702.0
52 TraesCS1A01G029100 chr1B 82.274 519 53 17 117 620 16517509 16518003 4.690000e-111 412.0
53 TraesCS1A01G029100 chr1B 83.688 423 57 9 1001 1423 16950460 16950870 7.900000e-104 388.0
54 TraesCS1A01G029100 chr1B 92.523 214 15 1 248 460 17338619 17338832 8.190000e-79 305.0
55 TraesCS1A01G029100 chr1B 79.915 234 22 12 5712 5928 16861751 16861976 1.460000e-31 148.0
56 TraesCS1A01G029100 chr1B 77.821 257 32 18 5832 6079 16776983 16777223 1.140000e-27 135.0
57 TraesCS1A01G029100 chr1B 97.468 79 2 0 1 79 17019794 17019716 1.140000e-27 135.0
58 TraesCS1A01G029100 chr1B 80.189 106 13 3 5489 5587 16860693 16860797 9.040000e-09 73.1
59 TraesCS1A01G029100 chrUn 87.663 2229 255 14 3273 5490 2472488 2470269 0.000000e+00 2575.0
60 TraesCS1A01G029100 chrUn 92.523 214 15 1 248 460 317005679 317005466 8.190000e-79 305.0
61 TraesCS1A01G029100 chrUn 92.523 214 15 1 248 460 317985479 317985266 8.190000e-79 305.0
62 TraesCS1A01G029100 chrUn 92.523 214 15 1 248 460 346216820 346217033 8.190000e-79 305.0
63 TraesCS1A01G029100 chrUn 80.753 239 17 12 5710 5928 311466649 311466420 6.750000e-35 159.0
64 TraesCS1A01G029100 chrUn 80.000 230 31 5 3066 3281 2473999 2473771 8.730000e-34 156.0
65 TraesCS1A01G029100 chr7A 97.059 34 0 1 6066 6099 24862666 24862634 1.000000e-03 56.5
66 TraesCS1A01G029100 chr4A 97.059 34 0 1 6066 6099 707238992 707238960 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G029100 chr1A 13662300 13668800 6500 False 12006.000000 12006 100.000000 1 6501 1 chr1A.!!$F1 6500
1 TraesCS1A01G029100 chr1A 13414043 13418981 4938 False 2812.000000 4787 87.757500 995 6501 2 chr1A.!!$F4 5506
2 TraesCS1A01G029100 chr1A 22612116 22616061 3945 True 1708.000000 3325 91.537333 980 5494 3 chr1A.!!$R4 4514
3 TraesCS1A01G029100 chr1A 13349038 13352734 3696 False 1472.500000 2835 83.974000 3239 6449 2 chr1A.!!$F3 3210
4 TraesCS1A01G029100 chr1A 13568421 13573615 5194 False 1382.000000 2963 86.721667 217 5586 3 chr1A.!!$F6 5369
5 TraesCS1A01G029100 chr1A 13452522 13457118 4596 False 1140.000000 2896 87.822000 204 5631 3 chr1A.!!$F5 5427
6 TraesCS1A01G029100 chr1A 12585286 12591953 6667 True 752.857143 3005 86.482000 74 5928 7 chr1A.!!$R3 5854
7 TraesCS1A01G029100 chr1A 12570303 12571053 750 True 658.000000 658 82.736000 1177 1918 1 chr1A.!!$R1 741
8 TraesCS1A01G029100 chr1A 13313153 13315007 1854 False 604.333333 1081 87.908333 1 1886 3 chr1A.!!$F2 1885
9 TraesCS1A01G029100 chr1D 11319577 11322108 2531 False 2789.000000 2789 86.672000 3134 5650 1 chr1D.!!$F2 2516
10 TraesCS1A01G029100 chr1D 11288059 11292815 4756 False 1205.333333 2712 82.927000 997 5928 3 chr1D.!!$F5 4931
11 TraesCS1A01G029100 chr1D 11176282 11182392 6110 False 984.400000 3317 83.604800 216 6079 5 chr1D.!!$F3 5863
12 TraesCS1A01G029100 chr1D 11451698 11459354 7656 False 921.571429 2724 87.160143 1 6152 7 chr1D.!!$F6 6151
13 TraesCS1A01G029100 chr1D 11272578 11274041 1463 False 432.250000 771 82.519000 840 1918 2 chr1D.!!$F4 1078
14 TraesCS1A01G029100 chr1B 16891622 16894169 2547 False 2765.000000 2765 86.357000 2945 5502 1 chr1B.!!$F3 2557
15 TraesCS1A01G029100 chr1B 16856397 16861976 5579 False 954.025000 2867 82.394000 998 5928 4 chr1B.!!$F7 4930
16 TraesCS1A01G029100 chr1B 16529960 16530941 981 False 785.000000 785 81.402000 931 1897 1 chr1B.!!$F1 966
17 TraesCS1A01G029100 chr1B 16517509 16519086 1577 False 557.000000 702 81.584500 117 1831 2 chr1B.!!$F6 1714
18 TraesCS1A01G029100 chrUn 2470269 2473999 3730 True 1365.500000 2575 83.831500 3066 5490 2 chrUn.!!$R4 2424

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
98 99 0.107165 GTGGGATAGTGGGGTTCTGC 60.107 60.000 0.0 0.0 0.00 4.26 F
836 2415 0.107703 GCATCGAATCCACTGACCCA 60.108 55.000 0.0 0.0 0.00 4.51 F
1939 4101 0.391597 TCCTCACGTCAAAGGGTCAC 59.608 55.000 8.0 0.0 33.21 3.67 F
2556 4720 0.039618 AAATTGGTGGGCCGATCTGT 59.960 50.000 0.0 0.0 37.91 3.41 F
2565 4729 0.179097 GGCCGATCTGTTCTCTGGTC 60.179 60.000 0.0 0.0 0.00 4.02 F
2566 4730 0.820871 GCCGATCTGTTCTCTGGTCT 59.179 55.000 0.0 0.0 0.00 3.85 F
2567 4731 1.205893 GCCGATCTGTTCTCTGGTCTT 59.794 52.381 0.0 0.0 0.00 3.01 F
4292 8252 1.538075 TGCGTGTACTTGATCTGTCGA 59.462 47.619 0.0 0.0 0.00 4.20 F
4901 8866 0.387565 GCATCTCTCGAACCTCTCCC 59.612 60.000 0.0 0.0 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1920 4082 0.391597 GTGACCCTTTGACGTGAGGA 59.608 55.000 10.05 0.0 34.91 3.71 R
2537 4701 0.039618 ACAGATCGGCCCACCAATTT 59.960 50.000 0.00 0.0 34.57 1.82 R
2844 5301 0.817013 CCTTTGGTACGCATTGCCAT 59.183 50.000 2.41 0.0 31.71 4.40 R
4052 8006 1.002576 TGCTTCATGTGACAAGTTGCG 60.003 47.619 1.81 0.0 0.00 4.85 R
4242 8202 2.165167 ACATTGACAGACTTGGCATGG 58.835 47.619 5.31 0.0 43.32 3.66 R
4563 8525 3.434309 CCCCTCAACACTTCAATGGATT 58.566 45.455 0.00 0.0 0.00 3.01 R
4764 8729 3.453717 TCCCAAGAGATCCATCAGTTCAG 59.546 47.826 0.00 0.0 0.00 3.02 R
5121 9087 0.538287 ACCCAGGCTGAAGCAAACTC 60.538 55.000 17.94 0.0 44.36 3.01 R
6273 11989 3.222173 TGTAACAGAAACATGTGGGCT 57.778 42.857 0.00 0.0 32.52 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 9.436957 TCTAAAACTTATTACTTCTCCTGCTTG 57.563 33.333 0.00 0.00 0.00 4.01
72 73 6.505044 TCTGATCCATTTGTGTTGATTGAG 57.495 37.500 0.00 0.00 0.00 3.02
86 87 2.293519 TGATTGAGTCCAGGGTGGGATA 60.294 50.000 0.00 0.00 39.62 2.59
98 99 0.107165 GTGGGATAGTGGGGTTCTGC 60.107 60.000 0.00 0.00 0.00 4.26
242 482 1.757118 GATCTCATCCAACCTCCGTGA 59.243 52.381 0.00 0.00 0.00 4.35
244 484 2.187958 TCTCATCCAACCTCCGTGAAT 58.812 47.619 0.00 0.00 0.00 2.57
296 539 3.076621 CCAGTGAAGTAGCAATGCTTGA 58.923 45.455 14.85 0.00 40.44 3.02
359 602 4.764308 TCGATTTGTGATGGTTGAATCCAA 59.236 37.500 0.00 0.00 41.09 3.53
367 610 0.603065 GGTTGAATCCAAGGTGGCAC 59.397 55.000 9.70 9.70 37.47 5.01
443 686 2.758423 CCTGGTAAAAATTTCCCTCCCG 59.242 50.000 0.00 0.00 0.00 5.14
446 689 2.421073 GGTAAAAATTTCCCTCCCGTCG 59.579 50.000 0.00 0.00 0.00 5.12
484 727 7.633621 TCTTCTTATTAATCTGCTGATTTGCG 58.366 34.615 21.91 8.61 42.37 4.85
502 751 8.346300 TGATTTGCGTTGATTGTAAGTTCTTAA 58.654 29.630 0.00 0.00 0.00 1.85
506 755 9.601971 TTGCGTTGATTGTAAGTTCTTAATTAC 57.398 29.630 0.00 0.00 33.42 1.89
551 831 4.070552 GCCGCCGTCTTGTCCTCT 62.071 66.667 0.00 0.00 0.00 3.69
552 832 2.125912 CCGCCGTCTTGTCCTCTG 60.126 66.667 0.00 0.00 0.00 3.35
553 833 2.125912 CGCCGTCTTGTCCTCTGG 60.126 66.667 0.00 0.00 0.00 3.86
554 834 2.932234 CGCCGTCTTGTCCTCTGGT 61.932 63.158 0.00 0.00 0.00 4.00
555 835 1.374758 GCCGTCTTGTCCTCTGGTG 60.375 63.158 0.00 0.00 0.00 4.17
556 836 1.374758 CCGTCTTGTCCTCTGGTGC 60.375 63.158 0.00 0.00 0.00 5.01
557 837 1.734477 CGTCTTGTCCTCTGGTGCG 60.734 63.158 0.00 0.00 0.00 5.34
558 838 2.029844 GTCTTGTCCTCTGGTGCGC 61.030 63.158 0.00 0.00 0.00 6.09
559 839 2.743928 CTTGTCCTCTGGTGCGCC 60.744 66.667 10.11 10.11 0.00 6.53
560 840 4.680237 TTGTCCTCTGGTGCGCCG 62.680 66.667 12.58 6.81 37.67 6.46
578 858 3.044305 GCACTGCTTCCGCTTCGT 61.044 61.111 0.00 0.00 36.97 3.85
579 859 2.607892 GCACTGCTTCCGCTTCGTT 61.608 57.895 0.00 0.00 36.97 3.85
745 1040 5.794894 AGAGGAGCTCGTTGAAATTAAAGA 58.205 37.500 10.79 0.00 35.36 2.52
810 1432 8.918202 TCTATTTTGCAGGTTATTATTCGGAT 57.082 30.769 0.00 0.00 0.00 4.18
812 1434 5.666969 TTTGCAGGTTATTATTCGGATCG 57.333 39.130 0.00 0.00 0.00 3.69
836 2415 0.107703 GCATCGAATCCACTGACCCA 60.108 55.000 0.00 0.00 0.00 4.51
837 2416 1.475751 GCATCGAATCCACTGACCCAT 60.476 52.381 0.00 0.00 0.00 4.00
858 2552 0.666274 CGCCGTTGTGTTCTGCTCTA 60.666 55.000 0.00 0.00 0.00 2.43
866 2560 4.400529 TGTGTTCTGCTCTACTGTGAAA 57.599 40.909 0.00 0.00 0.00 2.69
910 2608 5.641209 CCAGATCCCTACATTCATCGATTTC 59.359 44.000 0.00 0.00 0.00 2.17
978 3083 2.270352 TCGATTTGCAGGTTTCCAGT 57.730 45.000 0.00 0.00 0.00 4.00
1074 3183 1.906574 CTTGTGGGGGAGTACAAGCTA 59.093 52.381 0.00 0.00 44.81 3.32
1136 3245 1.800805 CTCAAGACCATGAACGCTGT 58.199 50.000 0.00 0.00 0.00 4.40
1441 3559 4.393062 ACAAGTTCGATGGTATTGCTTCTG 59.607 41.667 0.00 0.00 0.00 3.02
1563 3690 1.144936 CTCCTTGGAGGGCGATGAC 59.855 63.158 8.74 0.00 35.59 3.06
1716 3845 5.121811 CAGAACCCTGATATCAAGAAGGTG 58.878 45.833 6.90 2.12 43.02 4.00
1880 4042 4.517453 GTGTGTTGTTTCCCATGCTAGTTA 59.483 41.667 0.00 0.00 0.00 2.24
1886 4048 7.613801 TGTTGTTTCCCATGCTAGTTATACAAT 59.386 33.333 0.00 0.00 0.00 2.71
1938 4100 1.124780 TTCCTCACGTCAAAGGGTCA 58.875 50.000 8.00 0.00 33.21 4.02
1939 4101 0.391597 TCCTCACGTCAAAGGGTCAC 59.608 55.000 8.00 0.00 33.21 3.67
1950 4112 4.898607 GGGTCACCTTTGCTGACA 57.101 55.556 0.00 0.00 39.97 3.58
1952 4114 2.489938 GGGTCACCTTTGCTGACATA 57.510 50.000 0.00 0.00 39.97 2.29
1954 4116 1.732259 GGTCACCTTTGCTGACATACG 59.268 52.381 5.52 0.00 39.97 3.06
1956 4118 3.581755 GTCACCTTTGCTGACATACGTA 58.418 45.455 0.00 0.00 38.36 3.57
1957 4119 3.612860 GTCACCTTTGCTGACATACGTAG 59.387 47.826 0.08 0.00 38.36 3.51
1958 4120 4.854764 GTCACCTTTGCTGACATACGTAGT 60.855 45.833 0.08 0.00 40.53 2.73
1959 4121 3.994392 CACCTTTGCTGACATACGTAGTT 59.006 43.478 0.08 0.00 37.78 2.24
1960 4122 4.451096 CACCTTTGCTGACATACGTAGTTT 59.549 41.667 0.08 0.00 37.78 2.66
1961 4123 4.451096 ACCTTTGCTGACATACGTAGTTTG 59.549 41.667 0.08 0.00 37.78 2.93
1962 4124 4.394795 CTTTGCTGACATACGTAGTTTGC 58.605 43.478 0.08 8.36 43.14 3.68
1963 4125 3.033368 TGCTGACATACGTAGTTTGCA 57.967 42.857 0.08 10.45 43.14 4.08
1964 4126 2.734606 TGCTGACATACGTAGTTTGCAC 59.265 45.455 0.08 0.00 43.14 4.57
1965 4127 2.993899 GCTGACATACGTAGTTTGCACT 59.006 45.455 0.08 0.00 43.14 4.40
1966 4128 4.171005 GCTGACATACGTAGTTTGCACTA 58.829 43.478 0.08 0.00 43.14 2.74
1967 4129 4.624024 GCTGACATACGTAGTTTGCACTAA 59.376 41.667 0.08 0.00 43.14 2.24
1968 4130 5.119588 GCTGACATACGTAGTTTGCACTAAA 59.880 40.000 0.08 0.00 43.14 1.85
1969 4131 6.183360 GCTGACATACGTAGTTTGCACTAAAT 60.183 38.462 0.08 0.00 43.14 1.40
1970 4132 7.623506 GCTGACATACGTAGTTTGCACTAAATT 60.624 37.037 0.08 0.00 43.14 1.82
1971 4133 8.760103 TGACATACGTAGTTTGCACTAAATTA 57.240 30.769 0.08 0.00 43.14 1.40
1972 4134 9.205719 TGACATACGTAGTTTGCACTAAATTAA 57.794 29.630 0.08 0.00 43.14 1.40
2005 4167 3.033368 TGCTGACATACGTAGTTTGCA 57.967 42.857 0.08 10.45 43.14 4.08
2006 4168 2.734606 TGCTGACATACGTAGTTTGCAC 59.265 45.455 0.08 0.00 43.14 4.57
2007 4169 2.993899 GCTGACATACGTAGTTTGCACT 59.006 45.455 0.08 0.00 43.14 4.40
2008 4170 4.171005 GCTGACATACGTAGTTTGCACTA 58.829 43.478 0.08 0.00 43.14 2.74
2010 4172 5.220228 GCTGACATACGTAGTTTGCACTAAG 60.220 44.000 0.08 0.00 43.14 2.18
2011 4173 5.775686 TGACATACGTAGTTTGCACTAAGT 58.224 37.500 0.08 7.79 46.32 2.24
2012 4174 6.218019 TGACATACGTAGTTTGCACTAAGTT 58.782 36.000 7.93 0.00 43.34 2.66
2013 4175 7.369607 TGACATACGTAGTTTGCACTAAGTTA 58.630 34.615 7.93 0.00 43.34 2.24
2014 4176 8.030692 TGACATACGTAGTTTGCACTAAGTTAT 58.969 33.333 7.93 0.17 43.34 1.89
2015 4177 9.507280 GACATACGTAGTTTGCACTAAGTTATA 57.493 33.333 7.93 0.00 43.34 0.98
2016 4178 9.859427 ACATACGTAGTTTGCACTAAGTTATAA 57.141 29.630 7.93 0.00 43.34 0.98
2079 4242 4.717280 TCTTTGACCCTCCTCTCCTTTATC 59.283 45.833 0.00 0.00 0.00 1.75
2084 4247 6.269194 TGACCCTCCTCTCCTTTATCTAAAA 58.731 40.000 0.00 0.00 0.00 1.52
2107 4270 7.907214 AAAGATTATTGTAAGCACTTCTCGT 57.093 32.000 0.00 0.00 0.00 4.18
2127 4290 1.890876 TGCAATCGTTACAGTGGCTT 58.109 45.000 0.00 0.00 0.00 4.35
2128 4291 2.226330 TGCAATCGTTACAGTGGCTTT 58.774 42.857 0.00 0.00 0.00 3.51
2189 4353 9.033481 CATATTTTACAATACATGCACCAAAGG 57.967 33.333 0.00 0.00 0.00 3.11
2207 4371 6.070881 ACCAAAGGCACAAAATGATAAGCATA 60.071 34.615 0.00 0.00 35.78 3.14
2223 4387 8.562052 TGATAAGCATAATGTCAATTGTAGCAG 58.438 33.333 5.13 0.00 0.00 4.24
2236 4400 8.673711 GTCAATTGTAGCAGATAATACACCAAA 58.326 33.333 5.13 0.00 31.83 3.28
2237 4401 8.892723 TCAATTGTAGCAGATAATACACCAAAG 58.107 33.333 5.13 0.00 31.83 2.77
2238 4402 8.892723 CAATTGTAGCAGATAATACACCAAAGA 58.107 33.333 0.00 0.00 31.83 2.52
2240 4404 8.856153 TTGTAGCAGATAATACACCAAAGAAA 57.144 30.769 0.00 0.00 31.83 2.52
2242 4406 7.552687 TGTAGCAGATAATACACCAAAGAAAGG 59.447 37.037 0.00 0.00 0.00 3.11
2244 4408 7.175104 AGCAGATAATACACCAAAGAAAGGAA 58.825 34.615 0.00 0.00 0.00 3.36
2245 4409 7.669722 AGCAGATAATACACCAAAGAAAGGAAA 59.330 33.333 0.00 0.00 0.00 3.13
2247 4411 9.793252 CAGATAATACACCAAAGAAAGGAAATG 57.207 33.333 0.00 0.00 0.00 2.32
2251 4415 8.477419 AATACACCAAAGAAAGGAAATGAAGA 57.523 30.769 0.00 0.00 0.00 2.87
2252 4416 6.790232 ACACCAAAGAAAGGAAATGAAGAA 57.210 33.333 0.00 0.00 0.00 2.52
2253 4417 6.809869 ACACCAAAGAAAGGAAATGAAGAAG 58.190 36.000 0.00 0.00 0.00 2.85
2254 4418 6.183360 ACACCAAAGAAAGGAAATGAAGAAGG 60.183 38.462 0.00 0.00 0.00 3.46
2255 4419 6.040842 CACCAAAGAAAGGAAATGAAGAAGGA 59.959 38.462 0.00 0.00 0.00 3.36
2256 4420 6.266330 ACCAAAGAAAGGAAATGAAGAAGGAG 59.734 38.462 0.00 0.00 0.00 3.69
2257 4421 6.491403 CCAAAGAAAGGAAATGAAGAAGGAGA 59.509 38.462 0.00 0.00 0.00 3.71
2258 4422 7.178097 CCAAAGAAAGGAAATGAAGAAGGAGAT 59.822 37.037 0.00 0.00 0.00 2.75
2309 4473 4.903045 TTTCTTTCTCCTAACCCATCGT 57.097 40.909 0.00 0.00 0.00 3.73
2310 4474 4.903045 TTCTTTCTCCTAACCCATCGTT 57.097 40.909 0.00 0.00 38.57 3.85
2326 4490 9.855021 AACCCATCGTTTTCTAAAATAAAGATG 57.145 29.630 0.00 0.00 33.50 2.90
2345 4509 4.397417 AGATGTTAAAGTGCTCATCTTGCC 59.603 41.667 0.00 0.00 42.56 4.52
2362 4526 1.379044 CCCCAAAGGCTAGCCAGTG 60.379 63.158 34.70 28.32 38.92 3.66
2371 4535 3.115390 AGGCTAGCCAGTGATTTTCCTA 58.885 45.455 34.70 0.00 38.92 2.94
2374 4538 4.705023 GGCTAGCCAGTGATTTTCCTAAAA 59.295 41.667 29.33 0.00 35.81 1.52
2375 4539 5.360999 GGCTAGCCAGTGATTTTCCTAAAAT 59.639 40.000 29.33 0.00 38.69 1.82
2376 4540 6.546034 GGCTAGCCAGTGATTTTCCTAAAATA 59.454 38.462 29.33 0.00 37.34 1.40
2377 4541 7.231519 GGCTAGCCAGTGATTTTCCTAAAATAT 59.768 37.037 29.33 0.00 37.34 1.28
2378 4542 8.633561 GCTAGCCAGTGATTTTCCTAAAATATT 58.366 33.333 2.29 0.00 40.97 1.28
2379 4543 9.956720 CTAGCCAGTGATTTTCCTAAAATATTG 57.043 33.333 0.00 0.00 40.97 1.90
2380 4544 8.366359 AGCCAGTGATTTTCCTAAAATATTGT 57.634 30.769 0.00 0.00 40.97 2.71
2381 4545 9.474313 AGCCAGTGATTTTCCTAAAATATTGTA 57.526 29.630 0.00 0.00 40.97 2.41
2396 4560 8.721019 AAAATATTGTATGTTTGATGGCCAAG 57.279 30.769 10.96 0.00 35.94 3.61
2397 4561 7.658525 AATATTGTATGTTTGATGGCCAAGA 57.341 32.000 10.96 0.00 35.94 3.02
2405 4569 6.374565 TGTTTGATGGCCAAGAAAAATTTG 57.625 33.333 10.96 0.00 35.94 2.32
2423 4587 9.598517 AAAAATTTGAATTTGCTCTTCACTGTA 57.401 25.926 2.71 0.00 38.53 2.74
2425 4589 8.579682 AATTTGAATTTGCTCTTCACTGTAAC 57.420 30.769 0.00 0.00 32.57 2.50
2429 4593 8.389779 TGAATTTGCTCTTCACTGTAACATTA 57.610 30.769 0.00 0.00 0.00 1.90
2460 4624 6.748132 TCCTTTATGCCTCTTTTGAAACTTG 58.252 36.000 0.00 0.00 0.00 3.16
2466 4630 3.317993 GCCTCTTTTGAAACTTGCTACCA 59.682 43.478 0.00 0.00 0.00 3.25
2481 4645 4.413495 GCTACCAGCAAAATTTACACGA 57.587 40.909 0.00 0.00 41.89 4.35
2482 4646 4.789784 GCTACCAGCAAAATTTACACGAA 58.210 39.130 0.00 0.00 41.89 3.85
2483 4647 5.216648 GCTACCAGCAAAATTTACACGAAA 58.783 37.500 0.00 0.00 41.89 3.46
2484 4648 5.342259 GCTACCAGCAAAATTTACACGAAAG 59.658 40.000 0.00 0.00 41.89 2.62
2485 4649 4.616953 ACCAGCAAAATTTACACGAAAGG 58.383 39.130 0.00 0.00 0.00 3.11
2486 4650 4.339814 ACCAGCAAAATTTACACGAAAGGA 59.660 37.500 0.00 0.00 0.00 3.36
2487 4651 5.010617 ACCAGCAAAATTTACACGAAAGGAT 59.989 36.000 0.00 0.00 0.00 3.24
2488 4652 6.207810 ACCAGCAAAATTTACACGAAAGGATA 59.792 34.615 0.00 0.00 0.00 2.59
2489 4653 7.087639 CCAGCAAAATTTACACGAAAGGATAA 58.912 34.615 0.00 0.00 0.00 1.75
2490 4654 7.759433 CCAGCAAAATTTACACGAAAGGATAAT 59.241 33.333 0.00 0.00 0.00 1.28
2491 4655 8.586273 CAGCAAAATTTACACGAAAGGATAATG 58.414 33.333 0.00 0.00 0.00 1.90
2492 4656 7.275560 AGCAAAATTTACACGAAAGGATAATGC 59.724 33.333 0.00 0.00 0.00 3.56
2493 4657 7.464045 GCAAAATTTACACGAAAGGATAATGCC 60.464 37.037 0.00 0.00 0.00 4.40
2494 4658 6.767524 AATTTACACGAAAGGATAATGCCA 57.232 33.333 0.00 0.00 0.00 4.92
2495 4659 6.959639 ATTTACACGAAAGGATAATGCCAT 57.040 33.333 0.00 0.00 0.00 4.40
2496 4660 5.749596 TTACACGAAAGGATAATGCCATG 57.250 39.130 0.00 0.00 0.00 3.66
2497 4661 2.358898 ACACGAAAGGATAATGCCATGC 59.641 45.455 0.00 0.00 0.00 4.06
2498 4662 2.358582 CACGAAAGGATAATGCCATGCA 59.641 45.455 0.00 0.00 44.86 3.96
2499 4663 3.023119 ACGAAAGGATAATGCCATGCAA 58.977 40.909 0.00 0.00 43.62 4.08
2500 4664 3.638160 ACGAAAGGATAATGCCATGCAAT 59.362 39.130 0.00 0.00 43.62 3.56
2501 4665 4.099881 ACGAAAGGATAATGCCATGCAATT 59.900 37.500 0.00 0.00 43.62 2.32
2502 4666 5.051816 CGAAAGGATAATGCCATGCAATTT 58.948 37.500 0.00 0.00 43.62 1.82
2503 4667 5.050634 CGAAAGGATAATGCCATGCAATTTG 60.051 40.000 0.00 0.00 43.62 2.32
2504 4668 5.617528 AAGGATAATGCCATGCAATTTGA 57.382 34.783 0.00 0.00 43.62 2.69
2505 4669 5.209818 AGGATAATGCCATGCAATTTGAG 57.790 39.130 0.00 0.00 43.62 3.02
2506 4670 4.652421 AGGATAATGCCATGCAATTTGAGT 59.348 37.500 0.00 0.00 43.62 3.41
2507 4671 4.986659 GGATAATGCCATGCAATTTGAGTC 59.013 41.667 0.00 0.00 43.62 3.36
2508 4672 5.221382 GGATAATGCCATGCAATTTGAGTCT 60.221 40.000 0.00 0.00 43.62 3.24
2509 4673 3.795623 ATGCCATGCAATTTGAGTCTC 57.204 42.857 0.00 0.00 43.62 3.36
2510 4674 1.820519 TGCCATGCAATTTGAGTCTCC 59.179 47.619 0.00 0.00 34.76 3.71
2511 4675 1.820519 GCCATGCAATTTGAGTCTCCA 59.179 47.619 0.00 0.00 0.00 3.86
2512 4676 2.159282 GCCATGCAATTTGAGTCTCCAG 60.159 50.000 0.00 0.00 0.00 3.86
2513 4677 2.426024 CCATGCAATTTGAGTCTCCAGG 59.574 50.000 0.00 0.00 0.00 4.45
2514 4678 3.349927 CATGCAATTTGAGTCTCCAGGA 58.650 45.455 0.00 0.00 0.00 3.86
2515 4679 3.063510 TGCAATTTGAGTCTCCAGGAG 57.936 47.619 10.70 10.70 0.00 3.69
2516 4680 2.290514 TGCAATTTGAGTCTCCAGGAGG 60.291 50.000 17.10 0.00 0.00 4.30
2517 4681 2.290577 GCAATTTGAGTCTCCAGGAGGT 60.291 50.000 17.10 4.21 35.89 3.85
2518 4682 3.812167 GCAATTTGAGTCTCCAGGAGGTT 60.812 47.826 17.10 4.97 35.89 3.50
2519 4683 4.401925 CAATTTGAGTCTCCAGGAGGTTT 58.598 43.478 17.10 2.33 35.89 3.27
2520 4684 5.560724 CAATTTGAGTCTCCAGGAGGTTTA 58.439 41.667 17.10 0.00 35.89 2.01
2521 4685 6.183347 CAATTTGAGTCTCCAGGAGGTTTAT 58.817 40.000 17.10 0.86 35.89 1.40
2522 4686 5.843019 TTTGAGTCTCCAGGAGGTTTATT 57.157 39.130 17.10 0.00 35.89 1.40
2523 4687 6.945636 TTTGAGTCTCCAGGAGGTTTATTA 57.054 37.500 17.10 0.00 35.89 0.98
2524 4688 6.546428 TTGAGTCTCCAGGAGGTTTATTAG 57.454 41.667 17.10 0.00 35.89 1.73
2525 4689 4.406003 TGAGTCTCCAGGAGGTTTATTAGC 59.594 45.833 17.10 0.00 35.89 3.09
2526 4690 3.385111 AGTCTCCAGGAGGTTTATTAGCG 59.615 47.826 17.10 0.00 35.89 4.26
2527 4691 2.698797 TCTCCAGGAGGTTTATTAGCGG 59.301 50.000 17.10 0.00 35.89 5.52
2528 4692 1.140252 TCCAGGAGGTTTATTAGCGGC 59.860 52.381 0.00 0.00 35.89 6.53
2529 4693 1.141053 CCAGGAGGTTTATTAGCGGCT 59.859 52.381 7.98 7.98 0.00 5.52
2530 4694 2.367567 CCAGGAGGTTTATTAGCGGCTA 59.632 50.000 5.42 5.42 0.00 3.93
2531 4695 3.391049 CAGGAGGTTTATTAGCGGCTAC 58.609 50.000 9.68 0.00 0.00 3.58
2532 4696 3.069729 CAGGAGGTTTATTAGCGGCTACT 59.930 47.826 9.68 7.19 0.00 2.57
2533 4697 3.710165 AGGAGGTTTATTAGCGGCTACTT 59.290 43.478 9.68 3.09 0.00 2.24
2534 4698 4.897670 AGGAGGTTTATTAGCGGCTACTTA 59.102 41.667 9.68 2.08 0.00 2.24
2535 4699 5.010820 AGGAGGTTTATTAGCGGCTACTTAG 59.989 44.000 9.68 0.00 0.00 2.18
2536 4700 5.221402 GGAGGTTTATTAGCGGCTACTTAGT 60.221 44.000 9.68 0.00 0.00 2.24
2537 4701 6.015940 GGAGGTTTATTAGCGGCTACTTAGTA 60.016 42.308 9.68 0.00 0.00 1.82
2538 4702 7.352079 AGGTTTATTAGCGGCTACTTAGTAA 57.648 36.000 9.68 0.00 0.00 2.24
2539 4703 7.785033 AGGTTTATTAGCGGCTACTTAGTAAA 58.215 34.615 9.68 7.66 0.00 2.01
2540 4704 8.427276 AGGTTTATTAGCGGCTACTTAGTAAAT 58.573 33.333 9.68 2.47 0.00 1.40
2541 4705 9.049523 GGTTTATTAGCGGCTACTTAGTAAATT 57.950 33.333 9.68 0.00 0.00 1.82
2542 4706 9.859692 GTTTATTAGCGGCTACTTAGTAAATTG 57.140 33.333 9.68 0.00 0.00 2.32
2543 4707 8.597662 TTATTAGCGGCTACTTAGTAAATTGG 57.402 34.615 9.68 0.00 0.00 3.16
2544 4708 4.482952 AGCGGCTACTTAGTAAATTGGT 57.517 40.909 0.00 0.00 0.00 3.67
2545 4709 4.189231 AGCGGCTACTTAGTAAATTGGTG 58.811 43.478 0.00 0.00 0.00 4.17
2546 4710 3.311596 GCGGCTACTTAGTAAATTGGTGG 59.688 47.826 0.00 0.00 0.00 4.61
2547 4711 3.875134 CGGCTACTTAGTAAATTGGTGGG 59.125 47.826 0.00 0.00 0.00 4.61
2548 4712 3.630769 GGCTACTTAGTAAATTGGTGGGC 59.369 47.826 0.00 0.00 0.00 5.36
2549 4713 3.630769 GCTACTTAGTAAATTGGTGGGCC 59.369 47.826 0.00 0.00 0.00 5.80
2550 4714 2.718563 ACTTAGTAAATTGGTGGGCCG 58.281 47.619 0.00 0.00 37.67 6.13
2551 4715 2.306512 ACTTAGTAAATTGGTGGGCCGA 59.693 45.455 0.00 0.00 37.67 5.54
2552 4716 3.053917 ACTTAGTAAATTGGTGGGCCGAT 60.054 43.478 0.00 0.00 40.61 4.18
2553 4717 2.052782 AGTAAATTGGTGGGCCGATC 57.947 50.000 0.00 0.00 37.91 3.69
2554 4718 1.564348 AGTAAATTGGTGGGCCGATCT 59.436 47.619 0.00 0.00 37.91 2.75
2555 4719 1.676006 GTAAATTGGTGGGCCGATCTG 59.324 52.381 0.00 0.00 37.91 2.90
2556 4720 0.039618 AAATTGGTGGGCCGATCTGT 59.960 50.000 0.00 0.00 37.91 3.41
2557 4721 0.039618 AATTGGTGGGCCGATCTGTT 59.960 50.000 0.00 0.00 37.91 3.16
2558 4722 0.394352 ATTGGTGGGCCGATCTGTTC 60.394 55.000 0.00 0.00 33.58 3.18
2559 4723 1.488705 TTGGTGGGCCGATCTGTTCT 61.489 55.000 0.00 0.00 37.67 3.01
2560 4724 1.153349 GGTGGGCCGATCTGTTCTC 60.153 63.158 0.00 0.00 0.00 2.87
2561 4725 1.617947 GGTGGGCCGATCTGTTCTCT 61.618 60.000 0.00 0.00 0.00 3.10
2562 4726 0.460987 GTGGGCCGATCTGTTCTCTG 60.461 60.000 0.00 0.00 0.00 3.35
2563 4727 1.144936 GGGCCGATCTGTTCTCTGG 59.855 63.158 0.00 0.00 0.00 3.86
2564 4728 1.617947 GGGCCGATCTGTTCTCTGGT 61.618 60.000 0.00 0.00 0.00 4.00
2565 4729 0.179097 GGCCGATCTGTTCTCTGGTC 60.179 60.000 0.00 0.00 0.00 4.02
2566 4730 0.820871 GCCGATCTGTTCTCTGGTCT 59.179 55.000 0.00 0.00 0.00 3.85
2567 4731 1.205893 GCCGATCTGTTCTCTGGTCTT 59.794 52.381 0.00 0.00 0.00 3.01
2568 4732 2.354203 GCCGATCTGTTCTCTGGTCTTT 60.354 50.000 0.00 0.00 0.00 2.52
2569 4733 3.516615 CCGATCTGTTCTCTGGTCTTTC 58.483 50.000 0.00 0.00 0.00 2.62
2570 4734 3.516615 CGATCTGTTCTCTGGTCTTTCC 58.483 50.000 0.00 0.00 0.00 3.13
2571 4735 3.056536 CGATCTGTTCTCTGGTCTTTCCA 60.057 47.826 0.00 0.00 45.01 3.53
2572 4736 4.561530 CGATCTGTTCTCTGGTCTTTCCAA 60.562 45.833 0.00 0.00 46.59 3.53
2573 4737 4.982241 TCTGTTCTCTGGTCTTTCCAAT 57.018 40.909 0.00 0.00 46.59 3.16
2574 4738 6.627087 ATCTGTTCTCTGGTCTTTCCAATA 57.373 37.500 0.00 0.00 46.59 1.90
2575 4739 6.042638 TCTGTTCTCTGGTCTTTCCAATAG 57.957 41.667 0.00 0.00 46.59 1.73
2576 4740 5.780282 TCTGTTCTCTGGTCTTTCCAATAGA 59.220 40.000 0.00 0.00 46.59 1.98
2577 4741 6.441924 TCTGTTCTCTGGTCTTTCCAATAGAT 59.558 38.462 0.00 0.00 46.59 1.98
2578 4742 6.644347 TGTTCTCTGGTCTTTCCAATAGATC 58.356 40.000 0.00 0.00 46.59 2.75
2579 4743 6.441924 TGTTCTCTGGTCTTTCCAATAGATCT 59.558 38.462 0.00 0.00 46.59 2.75
2580 4744 7.619698 TGTTCTCTGGTCTTTCCAATAGATCTA 59.380 37.037 4.57 4.57 46.59 1.98
2581 4745 8.646900 GTTCTCTGGTCTTTCCAATAGATCTAT 58.353 37.037 9.57 9.57 46.59 1.98
2582 4746 8.415950 TCTCTGGTCTTTCCAATAGATCTATC 57.584 38.462 15.62 0.94 46.59 2.08
2583 4747 8.231007 TCTCTGGTCTTTCCAATAGATCTATCT 58.769 37.037 15.62 3.99 46.59 1.98
2584 4748 9.527157 CTCTGGTCTTTCCAATAGATCTATCTA 57.473 37.037 15.62 2.28 46.59 1.98
2585 4749 9.883293 TCTGGTCTTTCCAATAGATCTATCTAA 57.117 33.333 15.62 7.76 46.59 2.10
2587 4751 8.589338 TGGTCTTTCCAATAGATCTATCTAAGC 58.411 37.037 15.62 11.29 44.12 3.09
2588 4752 8.589338 GGTCTTTCCAATAGATCTATCTAAGCA 58.411 37.037 15.62 5.45 38.25 3.91
2688 4973 6.610075 ACTTATTGGCATTTGTCCAAGAAT 57.390 33.333 11.47 0.00 45.69 2.40
2826 5283 3.804786 AACCCACCCAGTTTTAAAACG 57.195 42.857 22.04 16.96 43.51 3.60
2841 5298 9.210329 AGTTTTAAAACGCATATTTTAAAGGGG 57.790 29.630 22.04 0.00 46.65 4.79
2842 5299 9.205719 GTTTTAAAACGCATATTTTAAAGGGGA 57.794 29.630 14.93 6.06 46.65 4.81
2843 5300 8.989653 TTTAAAACGCATATTTTAAAGGGGAG 57.010 30.769 14.39 0.00 43.79 4.30
2844 5301 6.844097 AAAACGCATATTTTAAAGGGGAGA 57.156 33.333 0.00 0.00 29.93 3.71
2930 5402 8.706322 ACAAGTTAAATTGTCCCTTCACTAAT 57.294 30.769 15.15 0.00 39.13 1.73
3215 5872 2.357009 TCGTGAGGTAAGGTTATCGAGC 59.643 50.000 0.00 0.00 0.00 5.03
3237 5894 4.260375 GCTTAAGATGCATGTCTGTTACGG 60.260 45.833 2.46 0.00 0.00 4.02
3253 5910 6.766944 TCTGTTACGGGTTTGTTTCTGAATAA 59.233 34.615 0.00 0.00 0.00 1.40
4042 7996 4.342665 TGCCGTGTACATGATATGGTTCTA 59.657 41.667 16.87 0.00 33.60 2.10
4242 8202 4.267349 TCTTTCCACCTGCTGTTAGTAC 57.733 45.455 0.00 0.00 0.00 2.73
4292 8252 1.538075 TGCGTGTACTTGATCTGTCGA 59.462 47.619 0.00 0.00 0.00 4.20
4298 8258 4.982916 GTGTACTTGATCTGTCGAACTGTT 59.017 41.667 0.00 0.00 0.00 3.16
4563 8525 2.880268 CTGGTGTGTTGCAGAATCTGAA 59.120 45.455 15.38 0.00 32.44 3.02
4744 8709 9.355215 CATATCGAAAGCCTAAGTATTCGTTAT 57.645 33.333 6.65 5.82 43.64 1.89
4764 8729 8.814235 TCGTTATAATTCCGAAGAAACATCTTC 58.186 33.333 8.22 8.22 41.84 2.87
4818 8783 1.043816 CCTCCTGTACATCTCCGCAT 58.956 55.000 0.00 0.00 0.00 4.73
4901 8866 0.387565 GCATCTCTCGAACCTCTCCC 59.612 60.000 0.00 0.00 0.00 4.30
4909 8874 4.094476 TCTCGAACCTCTCCCAGTTAATT 58.906 43.478 0.00 0.00 0.00 1.40
4942 8907 0.913451 AGGAAGTGCAGCAGGAGGAT 60.913 55.000 0.00 0.00 0.00 3.24
4976 8942 2.106683 GGGTTGATGTCCCTTCGCG 61.107 63.158 0.00 0.00 41.58 5.87
5077 9043 1.197721 GACTTGAATTGTGGGTCAGCG 59.802 52.381 0.00 0.00 0.00 5.18
5217 9183 4.416738 GCTCTCCCTTTGGCGGCT 62.417 66.667 11.43 0.00 0.00 5.52
5219 9185 1.746991 CTCTCCCTTTGGCGGCTTC 60.747 63.158 11.43 0.00 0.00 3.86
5225 9191 0.036388 CCTTTGGCGGCTTCTCTACA 60.036 55.000 11.43 0.00 0.00 2.74
5448 9749 8.677300 TGACCTTATTACTTTCTGCATTGATTC 58.323 33.333 0.00 0.00 0.00 2.52
6029 11730 0.394216 GCCCATGACATGCTGGTGTA 60.394 55.000 10.10 0.00 31.16 2.90
6080 11782 5.487488 ACCTGAGGGTGTATTATCAGTTTCA 59.513 40.000 2.38 0.00 45.43 2.69
6171 11887 0.455005 CTACTCCCTTCGTCCGGAAC 59.545 60.000 5.23 0.00 0.00 3.62
6173 11889 1.215647 CTCCCTTCGTCCGGAACTG 59.784 63.158 5.23 0.00 0.00 3.16
6204 11920 7.966246 TTTACTAGTTTTACCATTTCAGCGA 57.034 32.000 0.00 0.00 0.00 4.93
6236 11952 3.299050 ACGTCCATTTCAGCGTCAA 57.701 47.368 0.00 0.00 31.54 3.18
6237 11953 1.148310 ACGTCCATTTCAGCGTCAAG 58.852 50.000 0.00 0.00 31.54 3.02
6241 11957 3.423123 CGTCCATTTCAGCGTCAAGTAAC 60.423 47.826 0.00 0.00 0.00 2.50
6245 11961 3.462483 TTTCAGCGTCAAGTAACTCCA 57.538 42.857 0.00 0.00 0.00 3.86
6255 11971 4.765856 GTCAAGTAACTCCAGACAGAGGTA 59.234 45.833 0.00 0.00 38.26 3.08
6268 11984 8.996655 TCCAGACAGAGGTAGTAGTATTTACTA 58.003 37.037 0.00 0.00 37.73 1.82
6277 11993 9.360901 AGGTAGTAGTATTTACTAGTTTAGCCC 57.639 37.037 0.00 4.61 41.39 5.19
6279 11995 9.958234 GTAGTAGTATTTACTAGTTTAGCCCAC 57.042 37.037 0.00 0.00 41.39 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 6.748333 TCAACACAAATGGATCAGAATCTC 57.252 37.500 0.00 0.00 32.12 2.75
72 73 1.345715 CCCACTATCCCACCCTGGAC 61.346 65.000 0.00 0.00 40.96 4.02
86 87 2.769209 AGATAGATGCAGAACCCCACT 58.231 47.619 0.00 0.00 0.00 4.00
98 99 7.627513 GCTTGGAATCTCCGTACTAGATAGATG 60.628 44.444 0.00 1.75 40.17 2.90
206 446 0.379669 GATCAGCAACAAGGCGGATG 59.620 55.000 5.56 0.00 46.33 3.51
242 482 6.887545 TCGACAAGAAACATACCCCAAATATT 59.112 34.615 0.00 0.00 0.00 1.28
244 484 5.806818 TCGACAAGAAACATACCCCAAATA 58.193 37.500 0.00 0.00 0.00 1.40
296 539 8.967918 GCAGGGGAAGTAATAACTTTTTAGATT 58.032 33.333 0.00 0.00 46.09 2.40
346 589 1.203162 TGCCACCTTGGATTCAACCAT 60.203 47.619 0.00 0.00 40.96 3.55
359 602 0.773644 ATCACTGGAAAGTGCCACCT 59.226 50.000 0.91 0.00 39.49 4.00
367 610 5.065731 GGTGCTCTGAATAATCACTGGAAAG 59.934 44.000 0.00 0.00 0.00 2.62
443 686 7.995463 ATAAGAAGAGAATAGCAAGAACGAC 57.005 36.000 0.00 0.00 0.00 4.34
578 858 2.203195 AGCAGAACACAGCGGCAA 60.203 55.556 1.45 0.00 35.48 4.52
579 859 2.666190 GAGCAGAACACAGCGGCA 60.666 61.111 1.45 0.00 35.48 5.69
745 1040 6.493115 TGTAATCCAATCCAAACTGTGTGAAT 59.507 34.615 0.00 0.00 0.00 2.57
807 1429 0.445436 GATTCGATGCATGGCGATCC 59.555 55.000 2.46 0.00 36.31 3.36
810 1432 1.145819 TGGATTCGATGCATGGCGA 59.854 52.632 2.46 4.91 34.32 5.54
812 1434 0.309922 CAGTGGATTCGATGCATGGC 59.690 55.000 2.46 0.00 31.75 4.40
836 2415 2.325082 GCAGAACACAACGGCGGAT 61.325 57.895 13.24 0.00 0.00 4.18
837 2416 2.970324 GCAGAACACAACGGCGGA 60.970 61.111 13.24 0.00 0.00 5.54
910 2608 1.071605 GCTGTAGAACTGAGTTGGCG 58.928 55.000 0.90 0.00 0.00 5.69
999 3108 1.873591 GCACCCGTGACAATATCCATC 59.126 52.381 0.00 0.00 0.00 3.51
1074 3183 1.757682 TTTTCTTGACGCCCTTGTGT 58.242 45.000 0.00 0.00 38.09 3.72
1136 3245 2.306805 ACCTCACCAATCTTGATGAGCA 59.693 45.455 8.54 0.00 37.78 4.26
1441 3559 3.804873 GGATCGATTGCTTCAGTAGGAAC 59.195 47.826 0.00 0.00 36.99 3.62
1563 3690 2.743636 TCAGTTTCTTGGTAGAGGCG 57.256 50.000 0.00 0.00 0.00 5.52
1747 3882 2.996621 ACAACGCAAGATCTGAGTTAGC 59.003 45.455 0.00 0.00 45.12 3.09
1857 4015 2.884639 ACTAGCATGGGAAACAACACAC 59.115 45.455 0.00 0.00 0.00 3.82
1859 4020 5.897377 ATAACTAGCATGGGAAACAACAC 57.103 39.130 0.00 0.00 0.00 3.32
1898 4060 8.964476 AGGAACTGAGGTTACAATATGTATTG 57.036 34.615 10.41 10.41 42.93 1.90
1906 4068 3.323979 ACGTGAGGAACTGAGGTTACAAT 59.676 43.478 0.00 0.00 37.38 2.71
1916 4078 1.202651 ACCCTTTGACGTGAGGAACTG 60.203 52.381 10.05 0.00 41.55 3.16
1920 4082 0.391597 GTGACCCTTTGACGTGAGGA 59.608 55.000 10.05 0.00 34.91 3.71
1938 4100 3.955650 ACTACGTATGTCAGCAAAGGT 57.044 42.857 0.00 0.00 0.00 3.50
1939 4101 4.669197 GCAAACTACGTATGTCAGCAAAGG 60.669 45.833 0.00 0.00 0.00 3.11
1941 4103 3.810386 TGCAAACTACGTATGTCAGCAAA 59.190 39.130 15.27 2.62 0.00 3.68
1942 4104 3.185594 GTGCAAACTACGTATGTCAGCAA 59.814 43.478 17.37 7.34 32.10 3.91
1945 4107 6.699895 TTTAGTGCAAACTACGTATGTCAG 57.300 37.500 0.00 0.00 0.00 3.51
1946 4108 7.661127 AATTTAGTGCAAACTACGTATGTCA 57.339 32.000 0.00 0.00 0.00 3.58
1952 4114 9.223099 ACCTTATTAATTTAGTGCAAACTACGT 57.777 29.630 0.00 0.00 0.00 3.57
1956 4118 8.520351 GGTGACCTTATTAATTTAGTGCAAACT 58.480 33.333 0.00 0.00 0.00 2.66
1957 4119 8.520351 AGGTGACCTTATTAATTTAGTGCAAAC 58.480 33.333 0.00 0.00 0.00 2.93
1958 4120 8.644374 AGGTGACCTTATTAATTTAGTGCAAA 57.356 30.769 0.00 0.00 0.00 3.68
1959 4121 8.644374 AAGGTGACCTTATTAATTTAGTGCAA 57.356 30.769 16.64 0.00 42.74 4.08
1960 4122 8.519526 CAAAGGTGACCTTATTAATTTAGTGCA 58.480 33.333 18.60 0.00 43.92 4.57
1961 4123 7.488150 GCAAAGGTGACCTTATTAATTTAGTGC 59.512 37.037 18.60 15.08 43.92 4.40
1962 4124 8.739972 AGCAAAGGTGACCTTATTAATTTAGTG 58.260 33.333 18.60 9.02 43.92 2.74
1963 4125 8.739972 CAGCAAAGGTGACCTTATTAATTTAGT 58.260 33.333 18.60 0.00 43.92 2.24
1964 4126 8.956426 TCAGCAAAGGTGACCTTATTAATTTAG 58.044 33.333 18.60 1.69 43.92 1.85
1965 4127 8.871629 TCAGCAAAGGTGACCTTATTAATTTA 57.128 30.769 18.60 0.00 43.92 1.40
1966 4128 7.775053 TCAGCAAAGGTGACCTTATTAATTT 57.225 32.000 18.60 0.00 43.92 1.82
2052 4215 3.077695 AGGAGAGGAGGGTCAAAGACTTA 59.922 47.826 0.00 0.00 32.47 2.24
2059 4222 4.354208 AGATAAAGGAGAGGAGGGTCAA 57.646 45.455 0.00 0.00 0.00 3.18
2063 4226 7.439108 TCTTTTTAGATAAAGGAGAGGAGGG 57.561 40.000 0.00 0.00 36.12 4.30
2084 4247 7.624344 GCAACGAGAAGTGCTTACAATAATCTT 60.624 37.037 0.00 0.00 0.00 2.40
2097 4260 0.512952 ACGATTGCAACGAGAAGTGC 59.487 50.000 22.26 0.00 34.70 4.40
2098 4261 2.949714 AACGATTGCAACGAGAAGTG 57.050 45.000 22.26 2.52 34.70 3.16
2105 4268 1.724654 GCCACTGTAACGATTGCAACG 60.725 52.381 16.36 16.36 0.00 4.10
2107 4270 1.890876 AGCCACTGTAACGATTGCAA 58.109 45.000 0.00 0.00 0.00 4.08
2168 4332 4.281941 TGCCTTTGGTGCATGTATTGTAAA 59.718 37.500 0.00 0.00 32.85 2.01
2169 4333 3.829026 TGCCTTTGGTGCATGTATTGTAA 59.171 39.130 0.00 0.00 32.85 2.41
2189 4353 7.990541 TGACATTATGCTTATCATTTTGTGC 57.009 32.000 0.00 0.00 36.63 4.57
2207 4371 8.840321 GGTGTATTATCTGCTACAATTGACATT 58.160 33.333 13.59 0.00 30.14 2.71
2236 4400 9.237187 GTTTATCTCCTTCTTCATTTCCTTTCT 57.763 33.333 0.00 0.00 0.00 2.52
2237 4401 9.237187 AGTTTATCTCCTTCTTCATTTCCTTTC 57.763 33.333 0.00 0.00 0.00 2.62
2238 4402 9.593565 AAGTTTATCTCCTTCTTCATTTCCTTT 57.406 29.630 0.00 0.00 0.00 3.11
2287 4451 5.437191 ACGATGGGTTAGGAGAAAGAAAT 57.563 39.130 0.00 0.00 0.00 2.17
2325 4489 2.819608 GGGCAAGATGAGCACTTTAACA 59.180 45.455 0.00 0.00 31.20 2.41
2326 4490 2.164422 GGGGCAAGATGAGCACTTTAAC 59.836 50.000 0.00 0.00 35.24 2.01
2345 4509 0.257039 ATCACTGGCTAGCCTTTGGG 59.743 55.000 33.07 23.12 36.94 4.12
2371 4535 8.538701 TCTTGGCCATCAAACATACAATATTTT 58.461 29.630 6.09 0.00 34.56 1.82
2374 4538 7.658525 TTCTTGGCCATCAAACATACAATAT 57.341 32.000 6.09 0.00 34.56 1.28
2375 4539 7.473735 TTTCTTGGCCATCAAACATACAATA 57.526 32.000 6.09 0.00 34.56 1.90
2376 4540 5.999205 TTCTTGGCCATCAAACATACAAT 57.001 34.783 6.09 0.00 34.56 2.71
2377 4541 5.798125 TTTCTTGGCCATCAAACATACAA 57.202 34.783 6.09 0.00 34.56 2.41
2378 4542 5.798125 TTTTCTTGGCCATCAAACATACA 57.202 34.783 6.09 0.00 34.56 2.29
2379 4543 7.671495 AATTTTTCTTGGCCATCAAACATAC 57.329 32.000 6.09 0.00 34.56 2.39
2380 4544 7.935755 TCAAATTTTTCTTGGCCATCAAACATA 59.064 29.630 6.09 0.00 34.56 2.29
2381 4545 6.771749 TCAAATTTTTCTTGGCCATCAAACAT 59.228 30.769 6.09 4.49 34.56 2.71
2382 4546 6.118170 TCAAATTTTTCTTGGCCATCAAACA 58.882 32.000 6.09 1.94 34.56 2.83
2383 4547 6.616774 TCAAATTTTTCTTGGCCATCAAAC 57.383 33.333 6.09 0.00 34.56 2.93
2384 4548 7.820578 ATTCAAATTTTTCTTGGCCATCAAA 57.179 28.000 6.09 5.82 34.56 2.69
2385 4549 7.820578 AATTCAAATTTTTCTTGGCCATCAA 57.179 28.000 6.09 0.00 0.00 2.57
2386 4550 7.649973 CAAATTCAAATTTTTCTTGGCCATCA 58.350 30.769 6.09 0.00 36.52 3.07
2387 4551 6.583427 GCAAATTCAAATTTTTCTTGGCCATC 59.417 34.615 6.09 0.00 36.52 3.51
2388 4552 6.265876 AGCAAATTCAAATTTTTCTTGGCCAT 59.734 30.769 6.09 0.00 36.52 4.40
2396 4560 8.606602 ACAGTGAAGAGCAAATTCAAATTTTTC 58.393 29.630 0.00 1.93 38.34 2.29
2397 4561 8.496707 ACAGTGAAGAGCAAATTCAAATTTTT 57.503 26.923 0.00 0.00 38.34 1.94
2429 4593 8.593945 TCAAAAGAGGCATAAAGGAAACATAT 57.406 30.769 0.00 0.00 0.00 1.78
2432 4596 6.723298 TTCAAAAGAGGCATAAAGGAAACA 57.277 33.333 0.00 0.00 0.00 2.83
2433 4597 7.210174 AGTTTCAAAAGAGGCATAAAGGAAAC 58.790 34.615 0.00 0.00 40.90 2.78
2460 4624 4.413495 TCGTGTAAATTTTGCTGGTAGC 57.587 40.909 0.00 0.00 42.82 3.58
2466 4630 7.275560 GCATTATCCTTTCGTGTAAATTTTGCT 59.724 33.333 0.00 0.00 0.00 3.91
2470 4634 7.164230 TGGCATTATCCTTTCGTGTAAATTT 57.836 32.000 0.00 0.00 0.00 1.82
2474 4638 4.036262 GCATGGCATTATCCTTTCGTGTAA 59.964 41.667 0.00 0.00 0.00 2.41
2476 4640 2.358898 GCATGGCATTATCCTTTCGTGT 59.641 45.455 0.00 0.00 0.00 4.49
2478 4642 2.653726 TGCATGGCATTATCCTTTCGT 58.346 42.857 0.00 0.00 31.71 3.85
2479 4643 3.713858 TTGCATGGCATTATCCTTTCG 57.286 42.857 0.00 0.00 38.76 3.46
2480 4644 6.050432 TCAAATTGCATGGCATTATCCTTTC 58.950 36.000 0.00 0.00 38.76 2.62
2481 4645 5.991861 TCAAATTGCATGGCATTATCCTTT 58.008 33.333 0.00 0.00 38.76 3.11
2482 4646 5.129815 ACTCAAATTGCATGGCATTATCCTT 59.870 36.000 0.00 0.00 38.76 3.36
2483 4647 4.652421 ACTCAAATTGCATGGCATTATCCT 59.348 37.500 0.00 0.00 38.76 3.24
2484 4648 4.952460 ACTCAAATTGCATGGCATTATCC 58.048 39.130 0.00 0.00 38.76 2.59
2485 4649 5.839621 AGACTCAAATTGCATGGCATTATC 58.160 37.500 0.00 0.00 38.76 1.75
2486 4650 5.221382 GGAGACTCAAATTGCATGGCATTAT 60.221 40.000 4.53 0.00 38.76 1.28
2487 4651 4.098349 GGAGACTCAAATTGCATGGCATTA 59.902 41.667 4.53 0.00 38.76 1.90
2488 4652 3.118884 GGAGACTCAAATTGCATGGCATT 60.119 43.478 4.53 0.00 38.76 3.56
2489 4653 2.429610 GGAGACTCAAATTGCATGGCAT 59.570 45.455 4.53 0.00 38.76 4.40
2490 4654 1.820519 GGAGACTCAAATTGCATGGCA 59.179 47.619 4.53 0.00 36.47 4.92
2491 4655 1.820519 TGGAGACTCAAATTGCATGGC 59.179 47.619 4.53 0.00 0.00 4.40
2492 4656 2.426024 CCTGGAGACTCAAATTGCATGG 59.574 50.000 4.53 0.00 0.00 3.66
2493 4657 3.349927 TCCTGGAGACTCAAATTGCATG 58.650 45.455 4.53 0.00 0.00 4.06
2494 4658 3.618351 CTCCTGGAGACTCAAATTGCAT 58.382 45.455 19.13 0.00 0.00 3.96
2495 4659 2.290514 CCTCCTGGAGACTCAAATTGCA 60.291 50.000 25.18 0.00 34.57 4.08
2496 4660 2.290577 ACCTCCTGGAGACTCAAATTGC 60.291 50.000 25.18 0.00 37.04 3.56
2497 4661 3.710209 ACCTCCTGGAGACTCAAATTG 57.290 47.619 25.18 7.23 37.04 2.32
2498 4662 4.731313 AAACCTCCTGGAGACTCAAATT 57.269 40.909 25.18 6.10 37.04 1.82
2499 4663 6.394345 AATAAACCTCCTGGAGACTCAAAT 57.606 37.500 25.18 7.68 37.04 2.32
2500 4664 5.843019 AATAAACCTCCTGGAGACTCAAA 57.157 39.130 25.18 5.68 37.04 2.69
2501 4665 5.104900 GCTAATAAACCTCCTGGAGACTCAA 60.105 44.000 25.18 6.72 37.04 3.02
2502 4666 4.406003 GCTAATAAACCTCCTGGAGACTCA 59.594 45.833 25.18 7.78 37.04 3.41
2503 4667 4.500035 CGCTAATAAACCTCCTGGAGACTC 60.500 50.000 25.18 0.00 37.04 3.36
2504 4668 3.385111 CGCTAATAAACCTCCTGGAGACT 59.615 47.826 25.18 8.42 37.04 3.24
2505 4669 3.492829 CCGCTAATAAACCTCCTGGAGAC 60.493 52.174 25.18 2.21 37.04 3.36
2506 4670 2.698797 CCGCTAATAAACCTCCTGGAGA 59.301 50.000 25.18 5.22 37.04 3.71
2507 4671 2.807108 GCCGCTAATAAACCTCCTGGAG 60.807 54.545 17.02 17.02 37.04 3.86
2508 4672 1.140252 GCCGCTAATAAACCTCCTGGA 59.860 52.381 0.00 0.00 37.04 3.86
2509 4673 1.141053 AGCCGCTAATAAACCTCCTGG 59.859 52.381 0.00 0.00 39.83 4.45
2510 4674 2.622064 AGCCGCTAATAAACCTCCTG 57.378 50.000 0.00 0.00 0.00 3.86
2511 4675 3.306613 AGTAGCCGCTAATAAACCTCCT 58.693 45.455 0.46 0.00 0.00 3.69
2512 4676 3.747854 AGTAGCCGCTAATAAACCTCC 57.252 47.619 0.46 0.00 0.00 4.30
2513 4677 5.840715 ACTAAGTAGCCGCTAATAAACCTC 58.159 41.667 0.46 0.00 0.00 3.85
2514 4678 5.866159 ACTAAGTAGCCGCTAATAAACCT 57.134 39.130 0.46 0.00 0.00 3.50
2515 4679 8.599055 ATTTACTAAGTAGCCGCTAATAAACC 57.401 34.615 0.46 0.00 0.00 3.27
2516 4680 9.859692 CAATTTACTAAGTAGCCGCTAATAAAC 57.140 33.333 0.46 0.00 0.00 2.01
2517 4681 9.048446 CCAATTTACTAAGTAGCCGCTAATAAA 57.952 33.333 0.46 0.00 0.00 1.40
2518 4682 8.206189 ACCAATTTACTAAGTAGCCGCTAATAA 58.794 33.333 0.46 0.00 0.00 1.40
2519 4683 7.654520 CACCAATTTACTAAGTAGCCGCTAATA 59.345 37.037 0.46 0.00 0.00 0.98
2520 4684 6.482308 CACCAATTTACTAAGTAGCCGCTAAT 59.518 38.462 0.46 0.00 0.00 1.73
2521 4685 5.813672 CACCAATTTACTAAGTAGCCGCTAA 59.186 40.000 0.46 0.00 0.00 3.09
2522 4686 5.353938 CACCAATTTACTAAGTAGCCGCTA 58.646 41.667 0.00 0.00 0.00 4.26
2523 4687 4.189231 CACCAATTTACTAAGTAGCCGCT 58.811 43.478 0.00 0.00 0.00 5.52
2524 4688 3.311596 CCACCAATTTACTAAGTAGCCGC 59.688 47.826 0.00 0.00 0.00 6.53
2525 4689 3.875134 CCCACCAATTTACTAAGTAGCCG 59.125 47.826 0.00 0.00 0.00 5.52
2526 4690 3.630769 GCCCACCAATTTACTAAGTAGCC 59.369 47.826 0.00 0.00 0.00 3.93
2527 4691 3.630769 GGCCCACCAATTTACTAAGTAGC 59.369 47.826 0.00 0.00 35.26 3.58
2528 4692 3.875134 CGGCCCACCAATTTACTAAGTAG 59.125 47.826 0.00 0.00 34.57 2.57
2529 4693 3.518705 TCGGCCCACCAATTTACTAAGTA 59.481 43.478 0.00 0.00 34.57 2.24
2530 4694 2.306512 TCGGCCCACCAATTTACTAAGT 59.693 45.455 0.00 0.00 34.57 2.24
2531 4695 2.993937 TCGGCCCACCAATTTACTAAG 58.006 47.619 0.00 0.00 34.57 2.18
2532 4696 3.201266 AGATCGGCCCACCAATTTACTAA 59.799 43.478 0.00 0.00 34.57 2.24
2533 4697 2.775384 AGATCGGCCCACCAATTTACTA 59.225 45.455 0.00 0.00 34.57 1.82
2534 4698 1.564348 AGATCGGCCCACCAATTTACT 59.436 47.619 0.00 0.00 34.57 2.24
2535 4699 1.676006 CAGATCGGCCCACCAATTTAC 59.324 52.381 0.00 0.00 34.57 2.01
2536 4700 1.283613 ACAGATCGGCCCACCAATTTA 59.716 47.619 0.00 0.00 34.57 1.40
2537 4701 0.039618 ACAGATCGGCCCACCAATTT 59.960 50.000 0.00 0.00 34.57 1.82
2538 4702 0.039618 AACAGATCGGCCCACCAATT 59.960 50.000 0.00 0.00 34.57 2.32
2539 4703 0.394352 GAACAGATCGGCCCACCAAT 60.394 55.000 0.00 0.00 34.57 3.16
2540 4704 1.002624 GAACAGATCGGCCCACCAA 60.003 57.895 0.00 0.00 34.57 3.67
2541 4705 1.899437 GAGAACAGATCGGCCCACCA 61.899 60.000 0.00 0.00 34.57 4.17
2542 4706 1.153349 GAGAACAGATCGGCCCACC 60.153 63.158 0.00 0.00 0.00 4.61
2543 4707 0.460987 CAGAGAACAGATCGGCCCAC 60.461 60.000 0.00 0.00 0.00 4.61
2544 4708 1.617018 CCAGAGAACAGATCGGCCCA 61.617 60.000 0.00 0.00 0.00 5.36
2545 4709 1.144936 CCAGAGAACAGATCGGCCC 59.855 63.158 0.00 0.00 0.00 5.80
2546 4710 0.179097 GACCAGAGAACAGATCGGCC 60.179 60.000 0.00 0.00 0.00 6.13
2547 4711 0.820871 AGACCAGAGAACAGATCGGC 59.179 55.000 0.00 0.00 0.00 5.54
2548 4712 3.516615 GAAAGACCAGAGAACAGATCGG 58.483 50.000 0.00 0.00 0.00 4.18
2549 4713 3.056536 TGGAAAGACCAGAGAACAGATCG 60.057 47.826 0.00 0.00 44.64 3.69
2550 4714 4.543590 TGGAAAGACCAGAGAACAGATC 57.456 45.455 0.00 0.00 44.64 2.75
2557 4721 8.231007 AGATAGATCTATTGGAAAGACCAGAGA 58.769 37.037 16.37 0.00 41.87 3.10
2558 4722 8.421249 AGATAGATCTATTGGAAAGACCAGAG 57.579 38.462 16.37 0.00 41.87 3.35
2559 4723 9.883293 TTAGATAGATCTATTGGAAAGACCAGA 57.117 33.333 16.37 0.00 42.81 3.86
2561 4725 8.589338 GCTTAGATAGATCTATTGGAAAGACCA 58.411 37.037 16.37 0.00 41.47 4.02
2562 4726 8.589338 TGCTTAGATAGATCTATTGGAAAGACC 58.411 37.037 16.37 0.96 39.02 3.85
2582 4746 9.821662 GGTTTACAGTTTAGTTACAATGCTTAG 57.178 33.333 0.00 0.00 0.00 2.18
2583 4747 9.563748 AGGTTTACAGTTTAGTTACAATGCTTA 57.436 29.630 0.00 0.00 0.00 3.09
2584 4748 8.459911 AGGTTTACAGTTTAGTTACAATGCTT 57.540 30.769 0.00 0.00 0.00 3.91
2585 4749 8.459911 AAGGTTTACAGTTTAGTTACAATGCT 57.540 30.769 0.00 0.00 0.00 3.79
2586 4750 8.565416 AGAAGGTTTACAGTTTAGTTACAATGC 58.435 33.333 0.00 0.00 0.00 3.56
2589 4753 9.768662 CCTAGAAGGTTTACAGTTTAGTTACAA 57.231 33.333 0.00 0.00 0.00 2.41
2688 4973 6.858993 GTGTAACGCAAAATGTTTAGATGGAA 59.141 34.615 0.00 0.00 0.00 3.53
2794 5251 4.263506 ACTGGGTGGGTTAAGAAAGAGATG 60.264 45.833 0.00 0.00 0.00 2.90
2826 5283 4.588528 TGCCATCTCCCCTTTAAAATATGC 59.411 41.667 0.00 0.00 0.00 3.14
2841 5298 1.378531 TTGGTACGCATTGCCATCTC 58.621 50.000 2.41 0.00 31.71 2.75
2842 5299 1.745087 CTTTGGTACGCATTGCCATCT 59.255 47.619 2.41 0.00 31.71 2.90
2843 5300 1.202290 CCTTTGGTACGCATTGCCATC 60.202 52.381 2.41 0.00 31.71 3.51
2844 5301 0.817013 CCTTTGGTACGCATTGCCAT 59.183 50.000 2.41 0.00 31.71 4.40
3161 5809 2.945008 TGATCCTCCAATCAAATGACGC 59.055 45.455 0.00 0.00 32.80 5.19
3215 5872 4.271049 CCCGTAACAGACATGCATCTTAAG 59.729 45.833 0.00 0.00 0.00 1.85
3237 5894 7.462571 AGGGTGTATTATTCAGAAACAAACC 57.537 36.000 0.00 0.00 0.00 3.27
3253 5910 7.792736 TGGAACTAACCATCTATAAGGGTGTAT 59.207 37.037 0.00 0.00 34.51 2.29
4042 7996 2.301870 TGACAAGTTGCGGATAAGGTCT 59.698 45.455 1.81 0.00 0.00 3.85
4052 8006 1.002576 TGCTTCATGTGACAAGTTGCG 60.003 47.619 1.81 0.00 0.00 4.85
4242 8202 2.165167 ACATTGACAGACTTGGCATGG 58.835 47.619 5.31 0.00 43.32 3.66
4292 8252 6.303839 TGCTACTTTTTCCCAGATAACAGTT 58.696 36.000 0.00 0.00 0.00 3.16
4298 8258 3.523564 AGGCTGCTACTTTTTCCCAGATA 59.476 43.478 0.00 0.00 0.00 1.98
4563 8525 3.434309 CCCCTCAACACTTCAATGGATT 58.566 45.455 0.00 0.00 0.00 3.01
4764 8729 3.453717 TCCCAAGAGATCCATCAGTTCAG 59.546 47.826 0.00 0.00 0.00 3.02
4818 8783 3.433598 GCTGGGCATCCTAGACACAAATA 60.434 47.826 0.10 0.00 0.00 1.40
4901 8866 6.813649 TCCTTCACTGAATCGAGAATTAACTG 59.186 38.462 0.00 0.00 0.00 3.16
4909 8874 3.615110 GCACTTCCTTCACTGAATCGAGA 60.615 47.826 0.00 0.00 0.00 4.04
4976 8942 2.546162 GGGCGCTCTTTATGTAGAGACC 60.546 54.545 7.64 8.96 43.54 3.85
4994 8960 3.977244 CCGCTGTGTTTGGTGGGC 61.977 66.667 0.00 0.00 0.00 5.36
5077 9043 3.385577 TGGTTCAAACTTAATTTGCGCC 58.614 40.909 4.18 9.04 46.32 6.53
5120 9086 1.580845 CCCAGGCTGAAGCAAACTCG 61.581 60.000 17.94 0.00 44.36 4.18
5121 9087 0.538287 ACCCAGGCTGAAGCAAACTC 60.538 55.000 17.94 0.00 44.36 3.01
5225 9191 4.756642 CGCTCCACCACAATACATATGAAT 59.243 41.667 10.38 0.00 0.00 2.57
5448 9749 5.927689 GCATCTTGGTAGATTCAGAGATCAG 59.072 44.000 0.00 0.00 39.11 2.90
6029 11730 5.908341 TCCGGTTCAGCTTAAAAACAAAAT 58.092 33.333 0.00 0.00 0.00 1.82
6080 11782 7.883391 AAAGAGCTCAGATTTCATTCATCAT 57.117 32.000 17.77 0.00 0.00 2.45
6202 11918 6.971527 ATGGACGTCTCTAGATAATACTCG 57.028 41.667 16.46 0.00 0.00 4.18
6204 11920 8.693120 TGAAATGGACGTCTCTAGATAATACT 57.307 34.615 16.46 0.00 0.00 2.12
6236 11952 4.661247 ACTACCTCTGTCTGGAGTTACT 57.339 45.455 0.00 0.00 0.00 2.24
6237 11953 5.499313 ACTACTACCTCTGTCTGGAGTTAC 58.501 45.833 0.00 0.00 0.00 2.50
6241 11957 7.994334 AGTAAATACTACTACCTCTGTCTGGAG 59.006 40.741 0.00 0.00 34.13 3.86
6255 11971 8.599624 TGTGGGCTAAACTAGTAAATACTACT 57.400 34.615 0.00 0.00 37.73 2.57
6268 11984 3.832527 ACAGAAACATGTGGGCTAAACT 58.167 40.909 0.00 0.00 30.46 2.66
6273 11989 3.222173 TGTAACAGAAACATGTGGGCT 57.778 42.857 0.00 0.00 32.52 5.19
6274 11990 4.457603 TGTATGTAACAGAAACATGTGGGC 59.542 41.667 0.00 0.00 38.05 5.36
6277 11993 7.541783 CCCATTTGTATGTAACAGAAACATGTG 59.458 37.037 0.00 0.00 39.87 3.21
6279 11995 7.825681 TCCCATTTGTATGTAACAGAAACATG 58.174 34.615 0.00 0.00 39.87 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.