Multiple sequence alignment - TraesCS1A01G028800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G028800 chr1A 100.000 3726 0 0 1 3726 13454280 13458005 0.000000e+00 6881.0
1 TraesCS1A01G028800 chr1A 88.137 2571 265 29 162 2710 22614668 22612116 0.000000e+00 3022.0
2 TraesCS1A01G028800 chr1A 86.282 2719 309 44 163 2839 13665234 13667930 0.000000e+00 2896.0
3 TraesCS1A01G028800 chr1A 87.637 2459 290 9 167 2615 12589371 12586917 0.000000e+00 2844.0
4 TraesCS1A01G028800 chr1A 85.589 2727 307 46 312 2967 13571106 13573817 0.000000e+00 2780.0
5 TraesCS1A01G028800 chr1A 86.071 2563 299 38 312 2839 13415556 13418095 0.000000e+00 2702.0
6 TraesCS1A01G028800 chr1A 83.801 2889 364 53 166 2999 13315773 13318612 0.000000e+00 2647.0
7 TraesCS1A01G028800 chr1A 77.582 397 50 25 3124 3501 13574001 13574377 1.750000e-48 204.0
8 TraesCS1A01G028800 chr1A 87.333 150 14 3 2 150 13315126 13315271 2.300000e-37 167.0
9 TraesCS1A01G028800 chr1A 76.981 265 43 12 3109 3366 13343111 13343364 6.490000e-28 135.0
10 TraesCS1A01G028800 chr1A 78.661 239 16 21 2633 2839 12586853 12586618 3.910000e-25 126.0
11 TraesCS1A01G028800 chr1D 88.831 3080 256 45 1 3002 11178042 11181111 0.000000e+00 3701.0
12 TraesCS1A01G028800 chr1D 86.747 2739 280 54 336 3002 11319543 11322270 0.000000e+00 2970.0
13 TraesCS1A01G028800 chr1D 84.962 2600 318 44 312 2850 11289601 11292188 0.000000e+00 2567.0
14 TraesCS1A01G028800 chr1D 81.686 617 66 22 3104 3689 11277346 11277946 1.570000e-128 470.0
15 TraesCS1A01G028800 chr1D 84.091 132 14 5 3091 3220 11458316 11458442 1.820000e-23 121.0
16 TraesCS1A01G028800 chr1D 79.375 160 22 7 3091 3248 11322336 11322486 6.580000e-18 102.0
17 TraesCS1A01G028800 chr1D 92.857 56 1 2 2681 2733 11457932 11457987 1.110000e-10 78.7
18 TraesCS1A01G028800 chr1B 87.036 2746 280 47 154 2846 16519626 16522348 0.000000e+00 3029.0
19 TraesCS1A01G028800 chr1B 87.199 2695 256 56 342 2965 17017316 17014640 0.000000e+00 2983.0
20 TraesCS1A01G028800 chr1B 87.607 2461 286 12 151 2596 16857779 16860235 0.000000e+00 2837.0
21 TraesCS1A01G028800 chr1B 87.701 374 44 2 151 523 16531478 16531850 5.720000e-118 435.0
22 TraesCS1A01G028800 chr1B 87.733 375 42 4 151 523 16546399 16546771 5.720000e-118 435.0
23 TraesCS1A01G028800 chr1B 86.364 352 40 5 171 518 17340360 17340707 9.770000e-101 377.0
24 TraesCS1A01G028800 chr1B 98.667 150 2 0 1 150 16545953 16546102 2.210000e-67 267.0
25 TraesCS1A01G028800 chr1B 98.000 150 3 0 1 150 16519177 16519326 1.030000e-65 261.0
26 TraesCS1A01G028800 chr1B 98.000 150 3 0 1 150 16531032 16531181 1.030000e-65 261.0
27 TraesCS1A01G028800 chr1B 95.570 158 7 0 3056 3213 16633139 16633296 1.720000e-63 254.0
28 TraesCS1A01G028800 chr1B 93.333 150 6 1 1 150 16857401 16857546 6.270000e-53 219.0
29 TraesCS1A01G028800 chr1B 92.667 150 7 1 1 150 16926792 16926937 2.920000e-51 213.0
30 TraesCS1A01G028800 chr1B 79.679 187 28 7 2851 3029 16860870 16861054 3.910000e-25 126.0
31 TraesCS1A01G028800 chr1B 73.380 432 68 24 3097 3494 16694151 16694569 2.350000e-22 117.0
32 TraesCS1A01G028800 chrUn 89.073 2169 223 10 510 2666 2472488 2470322 0.000000e+00 2680.0
33 TraesCS1A01G028800 chrUn 84.354 147 20 2 12 156 317004373 317004228 1.400000e-29 141.0
34 TraesCS1A01G028800 chrUn 84.354 147 20 2 12 156 317984173 317984028 1.400000e-29 141.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G028800 chr1A 13454280 13458005 3725 False 6881.000000 6881 100.0000 1 3726 1 chr1A.!!$F3 3725
1 TraesCS1A01G028800 chr1A 22612116 22614668 2552 True 3022.000000 3022 88.1370 162 2710 1 chr1A.!!$R1 2548
2 TraesCS1A01G028800 chr1A 13665234 13667930 2696 False 2896.000000 2896 86.2820 163 2839 1 chr1A.!!$F4 2676
3 TraesCS1A01G028800 chr1A 13415556 13418095 2539 False 2702.000000 2702 86.0710 312 2839 1 chr1A.!!$F2 2527
4 TraesCS1A01G028800 chr1A 13571106 13574377 3271 False 1492.000000 2780 81.5855 312 3501 2 chr1A.!!$F6 3189
5 TraesCS1A01G028800 chr1A 12586618 12589371 2753 True 1485.000000 2844 83.1490 167 2839 2 chr1A.!!$R2 2672
6 TraesCS1A01G028800 chr1A 13315126 13318612 3486 False 1407.000000 2647 85.5670 2 2999 2 chr1A.!!$F5 2997
7 TraesCS1A01G028800 chr1D 11178042 11181111 3069 False 3701.000000 3701 88.8310 1 3002 1 chr1D.!!$F1 3001
8 TraesCS1A01G028800 chr1D 11289601 11292188 2587 False 2567.000000 2567 84.9620 312 2850 1 chr1D.!!$F3 2538
9 TraesCS1A01G028800 chr1D 11319543 11322486 2943 False 1536.000000 2970 83.0610 336 3248 2 chr1D.!!$F4 2912
10 TraesCS1A01G028800 chr1D 11277346 11277946 600 False 470.000000 470 81.6860 3104 3689 1 chr1D.!!$F2 585
11 TraesCS1A01G028800 chr1B 17014640 17017316 2676 True 2983.000000 2983 87.1990 342 2965 1 chr1B.!!$R1 2623
12 TraesCS1A01G028800 chr1B 16519177 16522348 3171 False 1645.000000 3029 92.5180 1 2846 2 chr1B.!!$F5 2845
13 TraesCS1A01G028800 chr1B 16857401 16861054 3653 False 1060.666667 2837 86.8730 1 3029 3 chr1B.!!$F8 3028
14 TraesCS1A01G028800 chr1B 16545953 16546771 818 False 351.000000 435 93.2000 1 523 2 chr1B.!!$F7 522
15 TraesCS1A01G028800 chr1B 16531032 16531850 818 False 348.000000 435 92.8505 1 523 2 chr1B.!!$F6 522
16 TraesCS1A01G028800 chrUn 2470322 2472488 2166 True 2680.000000 2680 89.0730 510 2666 1 chrUn.!!$R1 2156

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
468 986 0.094216 CGAGTTTGAGACGCATGCTG 59.906 55.000 17.13 11.87 0.00 4.41 F
1819 2362 1.205417 CCATTGAAGTGTTGATGGGGC 59.795 52.381 0.00 0.00 36.29 5.80 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2103 2649 0.032615 AGAGATGCGAGGGGTCTCTT 60.033 55.0 0.00 0.00 44.63 2.85 R
3704 4797 0.038890 TTGCATGATCCCGGGTGAAA 59.961 50.0 22.86 9.54 0.00 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
155 659 9.449719 GTCCAAGAAATCCATCTAAACTTCTTA 57.550 33.333 0.00 0.00 32.75 2.10
468 986 0.094216 CGAGTTTGAGACGCATGCTG 59.906 55.000 17.13 11.87 0.00 4.41
501 1020 8.403236 AGTTCGTTTTTGAATATATGCCCTTAC 58.597 33.333 0.00 0.00 0.00 2.34
773 1300 8.463930 AAATGAAACCTCTTTGTACTGATGAA 57.536 30.769 0.00 0.00 0.00 2.57
1071 1600 6.872020 TGAAAACTTGTCTACTGTACCTATGC 59.128 38.462 0.00 0.00 0.00 3.14
1167 1696 2.518407 TGGAGATCAAGGGACTAGCCTA 59.482 50.000 0.00 0.00 38.49 3.93
1201 1730 6.487103 GGATTAAATTACTTCAACCAGCTCG 58.513 40.000 0.00 0.00 0.00 5.03
1242 1771 5.452496 CCAGCCAATATATGATCGACTAGGG 60.452 48.000 0.00 0.00 0.00 3.53
1660 2198 2.559440 CTGAGATAGGAAACCTGCAGC 58.441 52.381 8.66 0.00 34.61 5.25
1717 2258 3.969642 GAATTGCCGCCCGCTGTTG 62.970 63.158 0.00 0.00 38.78 3.33
1814 2357 5.563592 TCTGACATCCATTGAAGTGTTGAT 58.436 37.500 0.00 0.00 0.00 2.57
1819 2362 1.205417 CCATTGAAGTGTTGATGGGGC 59.795 52.381 0.00 0.00 36.29 5.80
1921 2464 7.893302 AGGATGGTAGTTTGGATTTGTATGAAA 59.107 33.333 0.00 0.00 0.00 2.69
1979 2525 9.507280 CATTGAAAGCCTATATATTAATTGCGG 57.493 33.333 0.00 0.00 0.00 5.69
2094 2640 2.508887 CTCTCTGCACTGCGAGGC 60.509 66.667 17.29 0.00 32.96 4.70
2102 2648 0.533755 GCACTGCGAGGCTGGATAAT 60.534 55.000 0.00 0.00 0.00 1.28
2103 2649 1.270305 GCACTGCGAGGCTGGATAATA 60.270 52.381 0.00 0.00 0.00 0.98
2132 2678 1.403679 CTCGCATCTCTCGAACCTCTT 59.596 52.381 0.00 0.00 35.38 2.85
2275 2821 3.134127 GTGCAGATGGGTTCCGCC 61.134 66.667 0.00 0.00 0.00 6.13
2283 2829 1.917336 ATGGGTTCCGCCGTATGGTT 61.917 55.000 2.17 0.00 38.44 3.67
2401 2947 1.065709 TGGCGAAAGAGGATGGTAACC 60.066 52.381 0.00 0.00 0.00 2.85
2444 2990 2.377136 GGAACCTGCTCTCCCTTCA 58.623 57.895 0.00 0.00 0.00 3.02
2537 3083 4.389576 GCACACGCTCAAAGCCCG 62.390 66.667 0.00 0.00 38.18 6.13
2608 3430 3.197983 AGGTACTCATTCTGCACCTAACC 59.802 47.826 0.00 0.00 37.85 2.85
2644 3526 6.452242 TGTATGTACGTGTTTTCTCATGACT 58.548 36.000 0.00 0.00 0.00 3.41
2653 3535 1.351076 TTCTCATGACTGCCTGACCA 58.649 50.000 0.00 0.00 0.00 4.02
2679 3562 4.170292 GCTTTCTGCATGTGTTTGATCT 57.830 40.909 0.00 0.00 42.31 2.75
2714 3607 2.900716 TGACGATTTGTGTGAGGACA 57.099 45.000 0.00 0.00 0.00 4.02
2791 3767 8.593945 TTTGCCTATTATGTTTTCCATCTTCT 57.406 30.769 0.00 0.00 34.86 2.85
2792 3768 8.593945 TTGCCTATTATGTTTTCCATCTTCTT 57.406 30.769 0.00 0.00 34.86 2.52
2805 3786 7.443302 TTCCATCTTCTTTCTCCATGTCTAT 57.557 36.000 0.00 0.00 0.00 1.98
2839 3821 4.500837 GTCGTACACTGATCAACTATGCTG 59.499 45.833 0.00 0.00 0.00 4.41
2911 3926 4.124851 AGAAAAGTGAACTCGACACAGT 57.875 40.909 7.32 0.00 40.25 3.55
3005 4044 9.892130 AATTTTGTAGAAGGATAGTTAGTGGAG 57.108 33.333 0.00 0.00 0.00 3.86
3010 4057 7.776030 TGTAGAAGGATAGTTAGTGGAGAGAAG 59.224 40.741 0.00 0.00 0.00 2.85
3023 4070 6.930731 AGTGGAGAGAAGTAGAATTTGAGAC 58.069 40.000 0.00 0.00 0.00 3.36
3032 4079 8.816894 AGAAGTAGAATTTGAGACTATTGGTGA 58.183 33.333 0.00 0.00 0.00 4.02
3040 4087 2.237392 GAGACTATTGGTGAACAGGGCT 59.763 50.000 0.00 0.00 0.00 5.19
3041 4088 2.026822 AGACTATTGGTGAACAGGGCTG 60.027 50.000 0.00 0.00 0.00 4.85
3043 4090 2.086869 CTATTGGTGAACAGGGCTGTG 58.913 52.381 0.00 0.00 44.13 3.66
3044 4091 1.181098 ATTGGTGAACAGGGCTGTGC 61.181 55.000 0.00 0.00 44.13 4.57
3045 4092 2.113986 GGTGAACAGGGCTGTGCT 59.886 61.111 0.00 0.00 44.13 4.40
3046 4093 2.263741 GGTGAACAGGGCTGTGCTG 61.264 63.158 0.00 0.00 44.13 4.41
3047 4094 2.595463 TGAACAGGGCTGTGCTGC 60.595 61.111 0.00 0.00 44.13 5.25
3054 4101 2.029518 GGCTGTGCTGCCCAAAAC 59.970 61.111 8.65 0.00 46.82 2.43
3055 4102 2.501602 GGCTGTGCTGCCCAAAACT 61.502 57.895 8.65 0.00 46.82 2.66
3057 4104 1.662044 CTGTGCTGCCCAAAACTCC 59.338 57.895 0.00 0.00 0.00 3.85
3058 4105 1.076412 TGTGCTGCCCAAAACTCCA 60.076 52.632 0.00 0.00 0.00 3.86
3063 4110 2.968574 TGCTGCCCAAAACTCCAAATTA 59.031 40.909 0.00 0.00 0.00 1.40
3064 4111 3.006752 TGCTGCCCAAAACTCCAAATTAG 59.993 43.478 0.00 0.00 0.00 1.73
3065 4112 3.617288 GCTGCCCAAAACTCCAAATTAGG 60.617 47.826 0.00 0.00 0.00 2.69
3067 4114 3.323403 TGCCCAAAACTCCAAATTAGGTG 59.677 43.478 0.00 0.00 0.00 4.00
3068 4115 3.864540 GCCCAAAACTCCAAATTAGGTGC 60.865 47.826 0.00 0.00 0.00 5.01
3069 4116 3.578282 CCCAAAACTCCAAATTAGGTGCT 59.422 43.478 0.00 0.00 0.00 4.40
3072 4119 5.710099 CCAAAACTCCAAATTAGGTGCTAGA 59.290 40.000 0.00 0.00 0.00 2.43
3073 4120 6.127897 CCAAAACTCCAAATTAGGTGCTAGAG 60.128 42.308 0.00 0.00 0.00 2.43
3075 4122 5.091261 ACTCCAAATTAGGTGCTAGAGTG 57.909 43.478 0.00 0.00 32.37 3.51
3076 4123 3.873910 TCCAAATTAGGTGCTAGAGTGC 58.126 45.455 0.00 0.00 0.00 4.40
3078 4125 4.714802 TCCAAATTAGGTGCTAGAGTGCTA 59.285 41.667 0.00 0.00 0.00 3.49
3080 4127 5.163405 CCAAATTAGGTGCTAGAGTGCTAGA 60.163 44.000 4.23 0.00 45.71 2.43
3081 4128 6.341316 CAAATTAGGTGCTAGAGTGCTAGAA 58.659 40.000 4.23 0.00 45.71 2.10
3082 4129 6.739331 AATTAGGTGCTAGAGTGCTAGAAT 57.261 37.500 4.23 0.00 45.71 2.40
3085 4132 7.841282 TTAGGTGCTAGAGTGCTAGAATATT 57.159 36.000 4.23 0.00 45.71 1.28
3087 4134 5.835819 AGGTGCTAGAGTGCTAGAATATTGA 59.164 40.000 4.23 0.00 45.71 2.57
3088 4135 6.496565 AGGTGCTAGAGTGCTAGAATATTGAT 59.503 38.462 4.23 0.00 45.71 2.57
3089 4136 6.589523 GGTGCTAGAGTGCTAGAATATTGATG 59.410 42.308 4.23 0.00 45.71 3.07
3090 4137 6.589523 GTGCTAGAGTGCTAGAATATTGATGG 59.410 42.308 4.23 0.00 45.71 3.51
3092 4139 6.811170 GCTAGAGTGCTAGAATATTGATGGAC 59.189 42.308 4.23 0.00 45.71 4.02
3101 4148 9.277783 GCTAGAATATTGATGGACAATGTACTT 57.722 33.333 0.00 0.00 46.93 2.24
3105 4152 7.807977 ATATTGATGGACAATGTACTTCACC 57.192 36.000 12.98 0.00 46.93 4.02
3113 4160 6.170506 GGACAATGTACTTCACCTCATACAA 58.829 40.000 0.00 0.00 31.65 2.41
3121 4184 9.817809 TGTACTTCACCTCATACAATTTATCTC 57.182 33.333 0.00 0.00 0.00 2.75
3122 4185 9.262358 GTACTTCACCTCATACAATTTATCTCC 57.738 37.037 0.00 0.00 0.00 3.71
3175 4239 5.649395 TGCTAGCACTAATTTCATTGCTCTT 59.351 36.000 14.93 0.00 44.19 2.85
3213 4282 9.944376 GGGTTATATATGATGAAACTGCTAAGA 57.056 33.333 0.00 0.00 0.00 2.10
3220 4289 7.934855 ATGATGAAACTGCTAAGAAATCACT 57.065 32.000 0.00 0.00 0.00 3.41
3222 4291 8.846943 TGATGAAACTGCTAAGAAATCACTAA 57.153 30.769 0.00 0.00 0.00 2.24
3223 4292 9.453572 TGATGAAACTGCTAAGAAATCACTAAT 57.546 29.630 0.00 0.00 0.00 1.73
3262 4337 3.609853 TGTGAAGATTCATGTAGGTGGC 58.390 45.455 0.00 0.00 39.73 5.01
3345 4422 1.944709 ACAAGTGAAACGGCCTTGTAC 59.055 47.619 0.00 0.00 45.06 2.90
3355 4432 4.657436 ACGGCCTTGTACAAAATTTTGA 57.343 36.364 32.20 16.02 40.55 2.69
3362 4439 9.816354 GGCCTTGTACAAAATTTTGATATGTAT 57.184 29.630 32.20 13.97 40.55 2.29
3458 4544 4.645588 AGCTAGGTAGTGTGATACAGGAAC 59.354 45.833 0.00 0.00 0.00 3.62
3461 4547 5.599999 AGGTAGTGTGATACAGGAACATC 57.400 43.478 0.00 0.00 0.00 3.06
3462 4548 5.023452 AGGTAGTGTGATACAGGAACATCA 58.977 41.667 0.00 0.00 0.00 3.07
3471 4557 9.112725 TGTGATACAGGAACATCATCTTATTTG 57.887 33.333 0.00 0.00 33.92 2.32
3494 4580 4.241681 GCAGTAGAAAAGAGTCAGTGGAG 58.758 47.826 0.00 0.00 0.00 3.86
3526 4612 7.134815 GCAGTGTGCTTATGGTTTTGATATAG 58.865 38.462 0.00 0.00 40.96 1.31
3527 4613 7.201732 GCAGTGTGCTTATGGTTTTGATATAGT 60.202 37.037 0.00 0.00 40.96 2.12
3532 4618 8.345565 GTGCTTATGGTTTTGATATAGTTCCTG 58.654 37.037 0.00 0.00 0.00 3.86
3534 4620 8.903820 GCTTATGGTTTTGATATAGTTCCTGTT 58.096 33.333 0.00 0.00 0.00 3.16
3548 4634 4.721776 AGTTCCTGTTATAGCATTGAGGGA 59.278 41.667 0.00 0.00 0.00 4.20
3553 4639 6.772716 TCCTGTTATAGCATTGAGGGATTTTC 59.227 38.462 0.00 0.00 0.00 2.29
3566 4652 6.730447 TGAGGGATTTTCTGATTTGGTGATA 58.270 36.000 0.00 0.00 0.00 2.15
3581 4667 5.789574 TGGTGATAAATTTCAGGGGTAGT 57.210 39.130 0.00 0.00 0.00 2.73
3602 4688 5.128919 AGTCATGGATTCCATCTGTTTAGC 58.871 41.667 15.50 0.88 43.15 3.09
3615 4701 4.708177 TCTGTTTAGCTGAGAAAGTTGCT 58.292 39.130 0.00 0.00 39.30 3.91
3617 4703 5.008019 TCTGTTTAGCTGAGAAAGTTGCTTG 59.992 40.000 0.00 0.00 37.02 4.01
3618 4704 3.904136 TTAGCTGAGAAAGTTGCTTGC 57.096 42.857 0.00 2.55 37.02 4.01
3619 4705 1.978454 AGCTGAGAAAGTTGCTTGCT 58.022 45.000 6.51 6.51 30.91 3.91
3621 4707 1.335689 GCTGAGAAAGTTGCTTGCTGG 60.336 52.381 0.00 0.00 27.86 4.85
3622 4708 1.268899 CTGAGAAAGTTGCTTGCTGGG 59.731 52.381 0.00 0.00 27.86 4.45
3632 4725 0.319405 GCTTGCTGGGTGCTTCATTT 59.681 50.000 0.00 0.00 43.37 2.32
3633 4726 1.938016 GCTTGCTGGGTGCTTCATTTG 60.938 52.381 0.00 0.00 43.37 2.32
3644 4737 3.503748 GTGCTTCATTTGTTGGTCTAGCT 59.496 43.478 0.00 0.00 0.00 3.32
3646 4739 4.022935 TGCTTCATTTGTTGGTCTAGCTTG 60.023 41.667 0.00 0.00 0.00 4.01
3657 4750 1.661112 GTCTAGCTTGCACGGAATGAC 59.339 52.381 0.00 0.00 0.00 3.06
3663 4756 0.382158 TTGCACGGAATGACGCAAAA 59.618 45.000 0.00 0.00 41.14 2.44
3664 4757 0.040514 TGCACGGAATGACGCAAAAG 60.041 50.000 0.00 0.00 37.37 2.27
3665 4758 0.237235 GCACGGAATGACGCAAAAGA 59.763 50.000 0.00 0.00 37.37 2.52
3666 4759 1.950472 CACGGAATGACGCAAAAGAC 58.050 50.000 0.00 0.00 37.37 3.01
3667 4760 0.872388 ACGGAATGACGCAAAAGACC 59.128 50.000 0.00 0.00 37.37 3.85
3668 4761 1.156736 CGGAATGACGCAAAAGACCT 58.843 50.000 0.00 0.00 0.00 3.85
3669 4762 1.135972 CGGAATGACGCAAAAGACCTG 60.136 52.381 0.00 0.00 0.00 4.00
3670 4763 1.401539 GGAATGACGCAAAAGACCTGC 60.402 52.381 0.00 0.00 36.41 4.85
3686 4779 3.367678 TGCGTGATGTGCAGGATAG 57.632 52.632 0.00 0.00 37.44 2.08
3687 4780 0.811219 TGCGTGATGTGCAGGATAGC 60.811 55.000 0.00 0.00 37.44 2.97
3688 4781 0.811219 GCGTGATGTGCAGGATAGCA 60.811 55.000 0.00 0.00 43.35 3.49
3689 4782 1.215244 CGTGATGTGCAGGATAGCAG 58.785 55.000 0.00 0.00 46.69 4.24
3690 4783 1.590932 GTGATGTGCAGGATAGCAGG 58.409 55.000 0.00 0.00 46.69 4.85
3691 4784 0.471191 TGATGTGCAGGATAGCAGGG 59.529 55.000 0.00 0.00 46.69 4.45
3692 4785 0.250640 GATGTGCAGGATAGCAGGGG 60.251 60.000 0.00 0.00 46.69 4.79
3693 4786 2.203266 GTGCAGGATAGCAGGGGC 60.203 66.667 0.00 0.00 46.69 5.80
3694 4787 2.691996 TGCAGGATAGCAGGGGCA 60.692 61.111 0.00 0.00 44.61 5.36
3695 4788 2.203266 GCAGGATAGCAGGGGCAC 60.203 66.667 0.00 0.00 44.61 5.01
3708 4801 4.713946 GGCACCCGAGATGTTTCA 57.286 55.556 0.00 0.00 0.00 2.69
3709 4802 2.171635 GGCACCCGAGATGTTTCAC 58.828 57.895 0.00 0.00 0.00 3.18
3710 4803 1.305930 GGCACCCGAGATGTTTCACC 61.306 60.000 0.00 0.00 0.00 4.02
3711 4804 1.305930 GCACCCGAGATGTTTCACCC 61.306 60.000 0.00 0.00 0.00 4.61
3712 4805 1.019278 CACCCGAGATGTTTCACCCG 61.019 60.000 0.00 0.00 0.00 5.28
3713 4806 1.449601 CCCGAGATGTTTCACCCGG 60.450 63.158 0.00 0.00 36.98 5.73
3714 4807 1.449601 CCGAGATGTTTCACCCGGG 60.450 63.158 22.25 22.25 33.94 5.73
3715 4808 1.594833 CGAGATGTTTCACCCGGGA 59.405 57.895 32.02 1.07 0.00 5.14
3716 4809 0.178068 CGAGATGTTTCACCCGGGAT 59.822 55.000 32.02 9.10 0.00 3.85
3717 4810 1.806623 CGAGATGTTTCACCCGGGATC 60.807 57.143 32.02 18.70 0.00 3.36
3718 4811 1.209504 GAGATGTTTCACCCGGGATCA 59.790 52.381 32.02 17.80 0.00 2.92
3719 4812 1.846439 AGATGTTTCACCCGGGATCAT 59.154 47.619 32.02 21.50 0.00 2.45
3720 4813 1.949525 GATGTTTCACCCGGGATCATG 59.050 52.381 32.02 15.97 0.00 3.07
3721 4814 0.679640 TGTTTCACCCGGGATCATGC 60.680 55.000 32.02 12.94 0.00 4.06
3722 4815 0.679640 GTTTCACCCGGGATCATGCA 60.680 55.000 32.02 1.18 0.00 3.96
3723 4816 0.038890 TTTCACCCGGGATCATGCAA 59.961 50.000 32.02 8.89 0.00 4.08
3724 4817 0.038890 TTCACCCGGGATCATGCAAA 59.961 50.000 32.02 2.92 0.00 3.68
3725 4818 0.394216 TCACCCGGGATCATGCAAAG 60.394 55.000 32.02 3.30 0.00 2.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
501 1020 5.677319 ATATGGGTGGAACTATACATCGG 57.323 43.478 0.00 0.00 36.74 4.18
773 1300 4.302067 TCTTATGGAAGAGCCTTCTGGAT 58.698 43.478 12.71 7.11 36.75 3.41
1035 1564 4.699257 AGACAAGTTTTCAGATGAGATGGC 59.301 41.667 0.00 0.00 0.00 4.40
1071 1600 8.262933 TCAATGGTGCTATCTTCTGGATATATG 58.737 37.037 0.00 0.00 36.45 1.78
1167 1696 9.921637 TTGAAGTAATTTAATCCGAGCAAAAAT 57.078 25.926 0.00 0.00 0.00 1.82
1201 1730 8.854614 ATTGGCTGGATCATACTTCTATTAAC 57.145 34.615 0.00 0.00 0.00 2.01
1242 1771 0.588252 CACGGCAAGCATATACCTGC 59.412 55.000 0.00 0.00 42.62 4.85
1588 2126 3.515901 AGACCAAGATACCTCAGGTGAAC 59.484 47.826 6.61 0.00 36.19 3.18
1660 2198 6.648879 TTTAAGATCCAACACCTCCAAAAG 57.351 37.500 0.00 0.00 0.00 2.27
1717 2258 7.797062 AGGTAGATTAATCTTCTCAACTTCCC 58.203 38.462 22.60 2.97 38.32 3.97
1814 2357 1.152030 ACAGAGACCAAGAGCCCCA 60.152 57.895 0.00 0.00 0.00 4.96
1819 2362 6.402983 GCAATAATGTTCACAGAGACCAAGAG 60.403 42.308 0.00 0.00 0.00 2.85
1876 2419 4.321718 TCCTTGAAGTGAATCAGAAGCAG 58.678 43.478 0.00 0.00 0.00 4.24
1877 2420 4.356405 TCCTTGAAGTGAATCAGAAGCA 57.644 40.909 0.00 0.00 0.00 3.91
1921 2464 1.270358 GCCCAGAGACTTCACGAAACT 60.270 52.381 0.00 0.00 0.00 2.66
1979 2525 5.008712 AGTTCAAAAGATGTTTCTCCGGAAC 59.991 40.000 5.23 0.76 36.35 3.62
2094 2640 3.056465 GCGAGGGGTCTCTTATTATCCAG 60.056 52.174 0.00 0.00 37.86 3.86
2102 2648 1.215673 AGAGATGCGAGGGGTCTCTTA 59.784 52.381 0.00 0.00 44.63 2.10
2103 2649 0.032615 AGAGATGCGAGGGGTCTCTT 60.033 55.000 0.00 0.00 44.63 2.85
2275 2821 3.126171 TCCAAGCGAAATTCAACCATACG 59.874 43.478 0.00 0.00 0.00 3.06
2283 2829 3.153130 TCCACAATCCAAGCGAAATTCA 58.847 40.909 0.00 0.00 0.00 2.57
2354 2900 1.003839 CCCAGGCTGAACGCAACTA 60.004 57.895 17.94 0.00 41.67 2.24
2401 2947 2.613506 GGCCCAAGTCGAAACCACG 61.614 63.158 0.00 0.00 0.00 4.94
2444 2990 1.205460 ATAAACCCTGACACGCCCCT 61.205 55.000 0.00 0.00 0.00 4.79
2446 2992 2.218603 CATATAAACCCTGACACGCCC 58.781 52.381 0.00 0.00 0.00 6.13
2524 3070 4.699522 GGGACGGGCTTTGAGCGT 62.700 66.667 0.00 0.00 43.62 5.07
2553 3099 3.363378 GCGGCTTCATCTCAATATGAACG 60.363 47.826 0.00 0.00 40.17 3.95
2554 3100 3.363378 CGCGGCTTCATCTCAATATGAAC 60.363 47.826 0.00 0.00 40.17 3.18
2557 3103 2.138320 ACGCGGCTTCATCTCAATATG 58.862 47.619 12.47 0.00 0.00 1.78
2596 3145 3.181445 ACAAGTGATTGGTTAGGTGCAGA 60.181 43.478 0.00 0.00 0.00 4.26
2608 3430 7.520119 ACACGTACATACATACAAGTGATTG 57.480 36.000 0.00 0.00 33.18 2.67
2644 3526 3.018856 CAGAAAGCAATATGGTCAGGCA 58.981 45.455 0.00 0.00 0.00 4.75
2671 3553 2.783135 TGAGCACCTTGGAGATCAAAC 58.217 47.619 2.76 0.00 34.56 2.93
2675 3558 2.996249 TCATGAGCACCTTGGAGATC 57.004 50.000 0.00 0.00 0.00 2.75
2676 3559 2.775960 TCATCATGAGCACCTTGGAGAT 59.224 45.455 0.09 0.00 0.00 2.75
2677 3560 2.093288 GTCATCATGAGCACCTTGGAGA 60.093 50.000 0.09 0.00 0.00 3.71
2678 3561 2.286872 GTCATCATGAGCACCTTGGAG 58.713 52.381 0.09 0.00 0.00 3.86
2679 3562 1.405933 CGTCATCATGAGCACCTTGGA 60.406 52.381 0.09 0.00 0.00 3.53
2714 3607 3.244215 TGCGTCAGAAATCAGTTCTCCTT 60.244 43.478 0.00 0.00 45.25 3.36
2790 3766 5.010922 AGCTGAGCTATAGACATGGAGAAAG 59.989 44.000 4.49 0.00 36.99 2.62
2791 3767 4.898265 AGCTGAGCTATAGACATGGAGAAA 59.102 41.667 4.49 0.00 36.99 2.52
2792 3768 4.478203 AGCTGAGCTATAGACATGGAGAA 58.522 43.478 4.49 0.00 36.99 2.87
2805 3786 2.095212 CAGTGTACGACAAGCTGAGCTA 60.095 50.000 7.68 0.00 38.25 3.32
2839 3821 4.258543 TGTAAATACCTTGCCACTAGTGC 58.741 43.478 17.86 13.07 0.00 4.40
2889 3904 5.258456 ACTGTGTCGAGTTCACTTTTCTA 57.742 39.130 6.26 0.00 36.83 2.10
2911 3926 3.006112 TGGGCAAGTTTCACACTACAA 57.994 42.857 0.00 0.00 32.94 2.41
3005 4044 9.092876 CACCAATAGTCTCAAATTCTACTTCTC 57.907 37.037 0.00 0.00 0.00 2.87
3010 4057 8.547967 TGTTCACCAATAGTCTCAAATTCTAC 57.452 34.615 0.00 0.00 0.00 2.59
3023 4070 2.086869 CACAGCCCTGTTCACCAATAG 58.913 52.381 0.00 0.00 42.83 1.73
3040 4087 0.685785 TTGGAGTTTTGGGCAGCACA 60.686 50.000 0.00 0.00 0.00 4.57
3041 4088 0.463620 TTTGGAGTTTTGGGCAGCAC 59.536 50.000 0.00 0.00 0.00 4.40
3042 4089 1.422531 ATTTGGAGTTTTGGGCAGCA 58.577 45.000 0.00 0.00 0.00 4.41
3043 4090 2.549064 AATTTGGAGTTTTGGGCAGC 57.451 45.000 0.00 0.00 0.00 5.25
3044 4091 3.578282 ACCTAATTTGGAGTTTTGGGCAG 59.422 43.478 13.16 0.00 0.00 4.85
3045 4092 3.323403 CACCTAATTTGGAGTTTTGGGCA 59.677 43.478 13.16 0.00 0.00 5.36
3046 4093 3.864540 GCACCTAATTTGGAGTTTTGGGC 60.865 47.826 13.16 0.00 0.00 5.36
3047 4094 3.578282 AGCACCTAATTTGGAGTTTTGGG 59.422 43.478 13.16 0.00 0.00 4.12
3048 4095 4.871933 AGCACCTAATTTGGAGTTTTGG 57.128 40.909 13.16 0.00 0.00 3.28
3049 4096 6.431234 ACTCTAGCACCTAATTTGGAGTTTTG 59.569 38.462 13.16 1.30 30.00 2.44
3051 4098 5.940470 CACTCTAGCACCTAATTTGGAGTTT 59.060 40.000 13.16 1.16 31.59 2.66
3052 4099 5.491982 CACTCTAGCACCTAATTTGGAGTT 58.508 41.667 13.16 5.49 31.59 3.01
3053 4100 4.624125 GCACTCTAGCACCTAATTTGGAGT 60.624 45.833 13.16 1.69 33.80 3.85
3054 4101 3.873952 GCACTCTAGCACCTAATTTGGAG 59.126 47.826 13.16 5.96 0.00 3.86
3055 4102 3.519510 AGCACTCTAGCACCTAATTTGGA 59.480 43.478 13.16 0.00 36.85 3.53
3057 4104 5.907207 TCTAGCACTCTAGCACCTAATTTG 58.093 41.667 0.00 0.00 41.59 2.32
3058 4105 6.546428 TTCTAGCACTCTAGCACCTAATTT 57.454 37.500 0.00 0.00 41.59 1.82
3063 4110 5.835819 TCAATATTCTAGCACTCTAGCACCT 59.164 40.000 0.00 0.00 41.59 4.00
3064 4111 6.090483 TCAATATTCTAGCACTCTAGCACC 57.910 41.667 0.00 0.00 41.59 5.01
3065 4112 6.589523 CCATCAATATTCTAGCACTCTAGCAC 59.410 42.308 0.00 0.00 41.59 4.40
3067 4114 6.811170 GTCCATCAATATTCTAGCACTCTAGC 59.189 42.308 0.00 0.00 41.59 3.42
3068 4115 7.890515 TGTCCATCAATATTCTAGCACTCTAG 58.109 38.462 0.00 0.00 42.87 2.43
3069 4116 7.839680 TGTCCATCAATATTCTAGCACTCTA 57.160 36.000 0.00 0.00 0.00 2.43
3072 4119 7.285566 ACATTGTCCATCAATATTCTAGCACT 58.714 34.615 0.00 0.00 43.93 4.40
3073 4120 7.502120 ACATTGTCCATCAATATTCTAGCAC 57.498 36.000 0.00 0.00 43.93 4.40
3075 4122 8.839310 AGTACATTGTCCATCAATATTCTAGC 57.161 34.615 0.00 0.00 43.93 3.42
3078 4125 9.113838 GTGAAGTACATTGTCCATCAATATTCT 57.886 33.333 0.00 0.00 43.93 2.40
3080 4127 8.055181 AGGTGAAGTACATTGTCCATCAATATT 58.945 33.333 0.00 0.00 43.93 1.28
3081 4128 7.577303 AGGTGAAGTACATTGTCCATCAATAT 58.423 34.615 0.00 0.00 43.93 1.28
3082 4129 6.957631 AGGTGAAGTACATTGTCCATCAATA 58.042 36.000 0.00 0.00 43.93 1.90
3085 4132 4.285775 TGAGGTGAAGTACATTGTCCATCA 59.714 41.667 0.00 0.00 0.00 3.07
3087 4134 4.908601 TGAGGTGAAGTACATTGTCCAT 57.091 40.909 0.00 0.00 0.00 3.41
3088 4135 4.908601 ATGAGGTGAAGTACATTGTCCA 57.091 40.909 0.00 0.00 0.00 4.02
3089 4136 5.730550 TGTATGAGGTGAAGTACATTGTCC 58.269 41.667 0.00 0.00 0.00 4.02
3090 4137 7.849804 ATTGTATGAGGTGAAGTACATTGTC 57.150 36.000 0.00 0.00 0.00 3.18
3121 4184 7.835822 AGCTACAGAGATATGCTTACATAAGG 58.164 38.462 1.00 0.00 41.99 2.69
3168 4232 6.388619 AACCCCTTCTAGATTTAAGAGCAA 57.611 37.500 0.00 0.00 0.00 3.91
3218 4287 9.630098 CACAATCAGCAAGTAATTGAAATTAGT 57.370 29.630 7.18 0.00 36.37 2.24
3221 4290 9.199982 CTTCACAATCAGCAAGTAATTGAAATT 57.800 29.630 7.18 0.07 35.03 1.82
3222 4291 8.579006 TCTTCACAATCAGCAAGTAATTGAAAT 58.421 29.630 7.18 0.00 35.03 2.17
3223 4292 7.939782 TCTTCACAATCAGCAAGTAATTGAAA 58.060 30.769 7.18 0.00 35.03 2.69
3224 4293 7.509141 TCTTCACAATCAGCAAGTAATTGAA 57.491 32.000 7.18 0.00 35.03 2.69
3280 4355 9.871238 ACGTACATAGAATTCACAGAAAATACT 57.129 29.630 8.44 0.00 0.00 2.12
3304 4379 6.236017 TGTTGGAATTTCAAAGCTACTACG 57.764 37.500 0.00 0.00 0.00 3.51
3305 4380 7.591426 CACTTGTTGGAATTTCAAAGCTACTAC 59.409 37.037 0.00 0.00 0.00 2.73
3321 4398 0.106918 AGGCCGTTTCACTTGTTGGA 60.107 50.000 0.00 0.00 0.00 3.53
3322 4399 0.744281 AAGGCCGTTTCACTTGTTGG 59.256 50.000 0.00 0.00 0.00 3.77
3434 4520 5.641789 TCCTGTATCACACTACCTAGCTA 57.358 43.478 0.00 0.00 0.00 3.32
3441 4527 6.810911 AGATGATGTTCCTGTATCACACTAC 58.189 40.000 0.00 0.00 36.26 2.73
3442 4528 7.423844 AAGATGATGTTCCTGTATCACACTA 57.576 36.000 0.00 0.00 36.26 2.74
3443 4529 5.946942 AGATGATGTTCCTGTATCACACT 57.053 39.130 0.00 0.00 36.26 3.55
3444 4530 8.668510 AATAAGATGATGTTCCTGTATCACAC 57.331 34.615 0.00 0.00 36.26 3.82
3458 4544 8.896744 TCTTTTCTACTGCCAAATAAGATGATG 58.103 33.333 0.00 0.00 0.00 3.07
3461 4547 8.273780 ACTCTTTTCTACTGCCAAATAAGATG 57.726 34.615 0.00 0.00 0.00 2.90
3462 4548 8.103305 TGACTCTTTTCTACTGCCAAATAAGAT 58.897 33.333 0.00 0.00 0.00 2.40
3471 4557 3.006967 TCCACTGACTCTTTTCTACTGCC 59.993 47.826 0.00 0.00 0.00 4.85
3507 4593 8.052748 ACAGGAACTATATCAAAACCATAAGCA 58.947 33.333 0.00 0.00 36.02 3.91
3526 4612 5.036117 TCCCTCAATGCTATAACAGGAAC 57.964 43.478 0.00 0.00 0.00 3.62
3527 4613 5.912149 ATCCCTCAATGCTATAACAGGAA 57.088 39.130 0.00 0.00 0.00 3.36
3532 4618 7.807977 TCAGAAAATCCCTCAATGCTATAAC 57.192 36.000 0.00 0.00 0.00 1.89
3534 4620 8.853126 CAAATCAGAAAATCCCTCAATGCTATA 58.147 33.333 0.00 0.00 0.00 1.31
3535 4621 7.201974 CCAAATCAGAAAATCCCTCAATGCTAT 60.202 37.037 0.00 0.00 0.00 2.97
3542 4628 4.996793 TCACCAAATCAGAAAATCCCTCA 58.003 39.130 0.00 0.00 0.00 3.86
3553 4639 6.155049 ACCCCTGAAATTTATCACCAAATCAG 59.845 38.462 0.00 0.00 0.00 2.90
3566 4652 4.946160 TCCATGACTACCCCTGAAATTT 57.054 40.909 0.00 0.00 0.00 1.82
3602 4688 1.268899 CCCAGCAAGCAACTTTCTCAG 59.731 52.381 0.00 0.00 0.00 3.35
3617 4703 1.606224 CCAACAAATGAAGCACCCAGC 60.606 52.381 0.00 0.00 46.19 4.85
3618 4704 1.688197 ACCAACAAATGAAGCACCCAG 59.312 47.619 0.00 0.00 0.00 4.45
3619 4705 1.686052 GACCAACAAATGAAGCACCCA 59.314 47.619 0.00 0.00 0.00 4.51
3621 4707 3.366374 GCTAGACCAACAAATGAAGCACC 60.366 47.826 0.00 0.00 0.00 5.01
3622 4708 3.503748 AGCTAGACCAACAAATGAAGCAC 59.496 43.478 0.00 0.00 0.00 4.40
3632 4725 0.602638 CCGTGCAAGCTAGACCAACA 60.603 55.000 0.00 0.00 0.00 3.33
3633 4726 0.320421 TCCGTGCAAGCTAGACCAAC 60.320 55.000 0.00 0.00 0.00 3.77
3644 4737 0.382158 TTTTGCGTCATTCCGTGCAA 59.618 45.000 0.00 0.00 44.81 4.08
3646 4739 0.237235 TCTTTTGCGTCATTCCGTGC 59.763 50.000 0.00 0.00 0.00 5.34
3663 4756 2.743060 TGCACATCACGCAGGTCT 59.257 55.556 0.00 0.00 33.55 3.85
3668 4761 0.811219 GCTATCCTGCACATCACGCA 60.811 55.000 0.00 0.00 37.88 5.24
3669 4762 0.811219 TGCTATCCTGCACATCACGC 60.811 55.000 0.00 0.00 38.12 5.34
3670 4763 1.215244 CTGCTATCCTGCACATCACG 58.785 55.000 0.00 0.00 38.12 4.35
3671 4764 1.590932 CCTGCTATCCTGCACATCAC 58.409 55.000 0.00 0.00 38.12 3.06
3672 4765 0.471191 CCCTGCTATCCTGCACATCA 59.529 55.000 0.00 0.00 38.12 3.07
3683 4776 2.972589 ATCTCGGGTGCCCCTGCTAT 62.973 60.000 8.43 0.00 42.67 2.97
3684 4777 3.696518 ATCTCGGGTGCCCCTGCTA 62.697 63.158 8.43 0.00 42.67 3.49
3686 4779 4.864334 CATCTCGGGTGCCCCTGC 62.864 72.222 8.43 0.00 42.67 4.85
3687 4780 2.484287 AAACATCTCGGGTGCCCCTG 62.484 60.000 8.43 0.00 42.67 4.45
3688 4781 2.198304 GAAACATCTCGGGTGCCCCT 62.198 60.000 8.43 0.00 42.67 4.79
3689 4782 1.749258 GAAACATCTCGGGTGCCCC 60.749 63.158 0.99 0.30 41.09 5.80
3690 4783 1.002624 TGAAACATCTCGGGTGCCC 60.003 57.895 0.00 0.00 0.00 5.36
3691 4784 1.305930 GGTGAAACATCTCGGGTGCC 61.306 60.000 0.00 0.00 39.98 5.01
3692 4785 1.305930 GGGTGAAACATCTCGGGTGC 61.306 60.000 0.00 0.00 39.98 5.01
3693 4786 1.019278 CGGGTGAAACATCTCGGGTG 61.019 60.000 0.00 0.00 39.98 4.61
3694 4787 1.295423 CGGGTGAAACATCTCGGGT 59.705 57.895 0.00 0.00 39.98 5.28
3695 4788 1.449601 CCGGGTGAAACATCTCGGG 60.450 63.158 0.00 0.00 39.98 5.14
3696 4789 1.449601 CCCGGGTGAAACATCTCGG 60.450 63.158 14.18 0.00 39.98 4.63
3697 4790 0.178068 ATCCCGGGTGAAACATCTCG 59.822 55.000 22.86 0.00 39.98 4.04
3698 4791 1.209504 TGATCCCGGGTGAAACATCTC 59.790 52.381 22.86 5.27 39.98 2.75
3699 4792 1.285280 TGATCCCGGGTGAAACATCT 58.715 50.000 22.86 0.00 39.98 2.90
3700 4793 1.949525 CATGATCCCGGGTGAAACATC 59.050 52.381 22.86 15.42 39.98 3.06
3701 4794 2.023788 GCATGATCCCGGGTGAAACAT 61.024 52.381 22.86 16.02 39.98 2.71
3702 4795 0.679640 GCATGATCCCGGGTGAAACA 60.680 55.000 22.86 14.47 39.98 2.83
3703 4796 0.679640 TGCATGATCCCGGGTGAAAC 60.680 55.000 22.86 7.80 0.00 2.78
3704 4797 0.038890 TTGCATGATCCCGGGTGAAA 59.961 50.000 22.86 9.54 0.00 2.69
3705 4798 0.038890 TTTGCATGATCCCGGGTGAA 59.961 50.000 22.86 2.01 0.00 3.18
3706 4799 0.394216 CTTTGCATGATCCCGGGTGA 60.394 55.000 22.86 1.03 0.00 4.02
3707 4800 2.109431 CTTTGCATGATCCCGGGTG 58.891 57.895 22.86 12.92 0.00 4.61
3708 4801 4.664062 CTTTGCATGATCCCGGGT 57.336 55.556 22.86 8.01 0.00 5.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.