Multiple sequence alignment - TraesCS1A01G028500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G028500 chr1A 100.000 5918 0 0 1 5918 13346390 13352307 0.000000e+00 10929.0
1 TraesCS1A01G028500 chr1A 89.256 2876 229 33 2178 5021 13415246 13418073 0.000000e+00 3526.0
2 TraesCS1A01G028500 chr1A 90.049 2653 222 22 2394 5011 13570986 13573631 0.000000e+00 3398.0
3 TraesCS1A01G028500 chr1A 88.307 2386 251 22 2649 5021 13665538 13667908 0.000000e+00 2835.0
4 TraesCS1A01G028500 chr1A 88.840 2294 239 8 2510 4788 12589213 12586922 0.000000e+00 2802.0
5 TraesCS1A01G028500 chr1A 86.120 2536 287 49 2514 5028 13454612 13457103 0.000000e+00 2673.0
6 TraesCS1A01G028500 chr1A 87.682 2127 223 13 2178 4269 12569978 12567856 0.000000e+00 2440.0
7 TraesCS1A01G028500 chr1A 95.667 1454 49 2 1000 2439 13569533 13570986 0.000000e+00 2324.0
8 TraesCS1A01G028500 chr1A 93.110 1016 51 4 1180 2182 12571050 12570041 0.000000e+00 1471.0
9 TraesCS1A01G028500 chr1A 81.757 1047 99 45 206 1191 12573245 12572230 0.000000e+00 791.0
10 TraesCS1A01G028500 chr1A 82.713 457 57 10 5213 5647 12718398 12717942 2.590000e-103 387.0
11 TraesCS1A01G028500 chr1A 89.855 207 21 0 5670 5876 12717891 12717685 3.520000e-67 267.0
12 TraesCS1A01G028500 chr1A 91.758 182 11 3 5695 5873 12585586 12585406 3.540000e-62 250.0
13 TraesCS1A01G028500 chr1A 89.706 68 4 2 60 127 13567972 13568036 3.800000e-12 84.2
14 TraesCS1A01G028500 chr1A 79.528 127 13 8 774 900 13413823 13413936 1.770000e-10 78.7
15 TraesCS1A01G028500 chr1A 84.416 77 9 3 58 134 22616929 22616856 8.230000e-09 73.1
16 TraesCS1A01G028500 chr1D 88.233 2915 283 25 2176 5037 11289263 11292170 0.000000e+00 3428.0
17 TraesCS1A01G028500 chr1D 87.854 2544 261 35 2514 5021 11178375 11180906 0.000000e+00 2942.0
18 TraesCS1A01G028500 chr1D 85.905 2547 305 38 2523 5031 11319548 11322078 0.000000e+00 2665.0
19 TraesCS1A01G028500 chr1D 94.205 1208 42 4 1000 2182 11273114 11274318 0.000000e+00 1818.0
20 TraesCS1A01G028500 chr1D 86.755 1057 113 9 815 1865 11494102 11495137 0.000000e+00 1151.0
21 TraesCS1A01G028500 chr1D 83.504 976 146 13 1000 1971 11288062 11289026 0.000000e+00 896.0
22 TraesCS1A01G028500 chr1D 79.260 1027 177 19 841 1843 11453746 11454760 0.000000e+00 684.0
23 TraesCS1A01G028500 chr1D 87.500 208 24 2 5670 5876 11322887 11323093 7.660000e-59 239.0
24 TraesCS1A01G028500 chr1D 87.179 195 13 4 5055 5249 11292232 11292414 1.670000e-50 211.0
25 TraesCS1A01G028500 chr1D 85.024 207 28 3 5671 5876 11181872 11182076 2.160000e-49 207.0
26 TraesCS1A01G028500 chr1B 87.926 2907 291 33 2178 5036 17017681 17014787 0.000000e+00 3369.0
27 TraesCS1A01G028500 chr1B 92.070 1198 72 6 1000 2182 17018933 17017744 0.000000e+00 1664.0
28 TraesCS1A01G028500 chr1B 83.967 973 132 18 1010 1969 16839563 16840524 0.000000e+00 911.0
29 TraesCS1A01G028500 chr1B 84.735 904 122 11 1010 1904 16530039 16530935 0.000000e+00 891.0
30 TraesCS1A01G028500 chr1B 86.963 629 58 10 5031 5648 17014713 17014098 0.000000e+00 686.0
31 TraesCS1A01G028500 chr1B 83.916 572 68 15 5102 5669 16522510 16523061 5.250000e-145 525.0
32 TraesCS1A01G028500 chr1B 90.640 203 16 2 5687 5888 16523146 16523346 3.520000e-67 267.0
33 TraesCS1A01G028500 chr1B 81.851 281 30 11 5362 5625 16895089 16895365 3.590000e-52 217.0
34 TraesCS1A01G028500 chr1B 81.625 283 28 10 5362 5625 16844369 16844646 4.650000e-51 213.0
35 TraesCS1A01G028500 chr1B 79.399 233 33 10 5363 5586 16776502 16776728 3.690000e-32 150.0
36 TraesCS1A01G028500 chr1B 86.667 75 7 2 60 134 16529244 16529315 4.920000e-11 80.5
37 TraesCS1A01G028500 chr1B 97.143 35 0 1 5316 5349 16776435 16776469 2.300000e-04 58.4
38 TraesCS1A01G028500 chrUn 85.798 852 107 7 1010 1854 317005226 317004382 0.000000e+00 891.0
39 TraesCS1A01G028500 chrUn 85.798 852 107 7 1010 1854 317985026 317984182 0.000000e+00 891.0
40 TraesCS1A01G028500 chrUn 82.713 457 57 10 5213 5647 249073282 249072826 2.590000e-103 387.0
41 TraesCS1A01G028500 chrUn 82.713 457 57 10 5213 5647 311467288 311466832 2.590000e-103 387.0
42 TraesCS1A01G028500 chrUn 82.713 457 57 10 5213 5647 336792837 336792381 2.590000e-103 387.0
43 TraesCS1A01G028500 chrUn 89.855 207 21 0 5670 5876 249072775 249072569 3.520000e-67 267.0
44 TraesCS1A01G028500 chrUn 89.855 207 21 0 5670 5876 311466781 311466575 3.520000e-67 267.0
45 TraesCS1A01G028500 chrUn 89.855 207 21 0 5670 5876 336792330 336792124 3.520000e-67 267.0
46 TraesCS1A01G028500 chr4A 94.203 69 4 0 2440 2508 608607690 608607622 8.110000e-19 106.0
47 TraesCS1A01G028500 chr4A 97.872 47 1 0 2437 2483 101932010 101932056 1.370000e-11 82.4
48 TraesCS1A01G028500 chr6D 90.411 73 5 1 2440 2512 93529420 93529490 1.760000e-15 95.3
49 TraesCS1A01G028500 chr7D 95.745 47 2 0 2436 2482 62191422 62191468 6.360000e-10 76.8
50 TraesCS1A01G028500 chr7A 87.692 65 7 1 2444 2507 93921793 93921729 2.290000e-09 75.0
51 TraesCS1A01G028500 chr6A 86.111 72 6 1 2440 2507 609594969 609594898 2.290000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G028500 chr1A 13346390 13352307 5917 False 10929.000000 10929 100.000000 1 5918 1 chr1A.!!$F1 5917
1 TraesCS1A01G028500 chr1A 13665538 13667908 2370 False 2835.000000 2835 88.307000 2649 5021 1 chr1A.!!$F3 2372
2 TraesCS1A01G028500 chr1A 13454612 13457103 2491 False 2673.000000 2673 86.120000 2514 5028 1 chr1A.!!$F2 2514
3 TraesCS1A01G028500 chr1A 13567972 13573631 5659 False 1935.400000 3398 91.807333 60 5011 3 chr1A.!!$F5 4951
4 TraesCS1A01G028500 chr1A 13413823 13418073 4250 False 1802.350000 3526 84.392000 774 5021 2 chr1A.!!$F4 4247
5 TraesCS1A01G028500 chr1A 12567856 12573245 5389 True 1567.333333 2440 87.516333 206 4269 3 chr1A.!!$R2 4063
6 TraesCS1A01G028500 chr1A 12585406 12589213 3807 True 1526.000000 2802 90.299000 2510 5873 2 chr1A.!!$R3 3363
7 TraesCS1A01G028500 chr1A 12717685 12718398 713 True 327.000000 387 86.284000 5213 5876 2 chr1A.!!$R4 663
8 TraesCS1A01G028500 chr1D 11273114 11274318 1204 False 1818.000000 1818 94.205000 1000 2182 1 chr1D.!!$F1 1182
9 TraesCS1A01G028500 chr1D 11178375 11182076 3701 False 1574.500000 2942 86.439000 2514 5876 2 chr1D.!!$F4 3362
10 TraesCS1A01G028500 chr1D 11288062 11292414 4352 False 1511.666667 3428 86.305333 1000 5249 3 chr1D.!!$F5 4249
11 TraesCS1A01G028500 chr1D 11319548 11323093 3545 False 1452.000000 2665 86.702500 2523 5876 2 chr1D.!!$F6 3353
12 TraesCS1A01G028500 chr1D 11494102 11495137 1035 False 1151.000000 1151 86.755000 815 1865 1 chr1D.!!$F3 1050
13 TraesCS1A01G028500 chr1D 11453746 11454760 1014 False 684.000000 684 79.260000 841 1843 1 chr1D.!!$F2 1002
14 TraesCS1A01G028500 chr1B 17014098 17018933 4835 True 1906.333333 3369 88.986333 1000 5648 3 chr1B.!!$R1 4648
15 TraesCS1A01G028500 chr1B 16839563 16844646 5083 False 562.000000 911 82.796000 1010 5625 2 chr1B.!!$F5 4615
16 TraesCS1A01G028500 chr1B 16529244 16530935 1691 False 485.750000 891 85.701000 60 1904 2 chr1B.!!$F3 1844
17 TraesCS1A01G028500 chr1B 16522510 16523346 836 False 396.000000 525 87.278000 5102 5888 2 chr1B.!!$F2 786
18 TraesCS1A01G028500 chrUn 317004382 317005226 844 True 891.000000 891 85.798000 1010 1854 1 chrUn.!!$R1 844
19 TraesCS1A01G028500 chrUn 317984182 317985026 844 True 891.000000 891 85.798000 1010 1854 1 chrUn.!!$R2 844
20 TraesCS1A01G028500 chrUn 249072569 249073282 713 True 327.000000 387 86.284000 5213 5876 2 chrUn.!!$R3 663
21 TraesCS1A01G028500 chrUn 311466575 311467288 713 True 327.000000 387 86.284000 5213 5876 2 chrUn.!!$R4 663
22 TraesCS1A01G028500 chrUn 336792124 336792837 713 True 327.000000 387 86.284000 5213 5876 2 chrUn.!!$R5 663

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
28 29 0.035630 ATGAAGTCTCTGGCAGGTGC 60.036 55.000 15.73 4.88 41.14 5.01 F
177 178 0.035630 GCCAGAGACTTGGTGCATCT 60.036 55.000 0.00 0.00 40.49 2.90 F
930 1907 0.109723 AAGTTTGGGCTTGGCGACTA 59.890 50.000 0.00 0.00 0.00 2.59 F
1524 3757 0.630673 AGCTGGTGGGCATTTATGGA 59.369 50.000 0.00 0.00 34.17 3.41 F
3351 5806 2.158460 AGGGACTAGCCTGTTTTTGCTT 60.158 45.455 0.00 0.00 39.00 3.91 F
4039 6503 0.752743 TGCACAAGAGCTTGGCAACT 60.753 50.000 17.82 0.00 44.45 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1476 3709 0.447801 CTGTGTACAATGCCCGAAGC 59.552 55.000 0.0 0.0 44.14 3.86 R
1684 3920 1.004200 GACCGACGGGGACAAATGT 60.004 57.895 20.0 0.0 39.97 2.71 R
1962 4206 1.804748 CCTTTGCGGTTTACTGACCTC 59.195 52.381 0.0 0.0 37.56 3.85 R
3502 5957 1.991121 ATGCTATTCCCAGTGCCATG 58.009 50.000 0.0 0.0 0.00 3.66 R
4642 7109 0.387202 CTCGCTCCACCAGGATACAG 59.613 60.000 0.0 0.0 44.70 2.74 R
4934 7486 0.520404 CAAGAGCACACCTGATGCAC 59.480 55.000 0.0 0.0 45.92 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.758736 AGTGTCATGAAGTCTCTGGC 57.241 50.000 0.00 0.00 0.00 4.85
23 24 1.973515 AGTGTCATGAAGTCTCTGGCA 59.026 47.619 0.00 0.00 0.00 4.92
24 25 2.028294 AGTGTCATGAAGTCTCTGGCAG 60.028 50.000 8.58 8.58 0.00 4.85
25 26 1.277273 TGTCATGAAGTCTCTGGCAGG 59.723 52.381 15.73 5.63 0.00 4.85
26 27 1.277557 GTCATGAAGTCTCTGGCAGGT 59.722 52.381 15.73 0.00 0.00 4.00
27 28 1.277273 TCATGAAGTCTCTGGCAGGTG 59.723 52.381 15.73 8.33 0.00 4.00
28 29 0.035630 ATGAAGTCTCTGGCAGGTGC 60.036 55.000 15.73 4.88 41.14 5.01
29 30 1.372683 GAAGTCTCTGGCAGGTGCA 59.627 57.895 15.73 0.00 44.36 4.57
30 31 0.952984 GAAGTCTCTGGCAGGTGCAC 60.953 60.000 15.73 8.80 44.36 4.57
31 32 2.721971 AAGTCTCTGGCAGGTGCACG 62.722 60.000 15.73 0.00 44.36 5.34
32 33 3.233980 TCTCTGGCAGGTGCACGT 61.234 61.111 15.73 8.83 44.36 4.49
33 34 1.906333 TCTCTGGCAGGTGCACGTA 60.906 57.895 15.73 0.00 44.36 3.57
34 35 1.219124 CTCTGGCAGGTGCACGTAT 59.781 57.895 15.73 0.00 44.36 3.06
35 36 0.459899 CTCTGGCAGGTGCACGTATA 59.540 55.000 15.73 0.82 44.36 1.47
36 37 0.174845 TCTGGCAGGTGCACGTATAC 59.825 55.000 15.73 6.08 44.36 1.47
37 38 0.108377 CTGGCAGGTGCACGTATACA 60.108 55.000 12.40 10.23 44.36 2.29
38 39 0.108377 TGGCAGGTGCACGTATACAG 60.108 55.000 12.40 0.38 44.36 2.74
39 40 0.108329 GGCAGGTGCACGTATACAGT 60.108 55.000 12.40 0.00 44.36 3.55
40 41 1.135527 GGCAGGTGCACGTATACAGTA 59.864 52.381 12.40 0.00 44.36 2.74
41 42 2.460918 GCAGGTGCACGTATACAGTAG 58.539 52.381 12.40 0.00 41.59 2.57
42 43 2.159282 GCAGGTGCACGTATACAGTAGT 60.159 50.000 12.40 0.00 41.59 2.73
43 44 3.065786 GCAGGTGCACGTATACAGTAGTA 59.934 47.826 12.40 0.00 41.59 1.82
44 45 4.595116 CAGGTGCACGTATACAGTAGTAC 58.405 47.826 12.40 0.00 31.96 2.73
45 46 4.095334 CAGGTGCACGTATACAGTAGTACA 59.905 45.833 12.40 0.00 31.96 2.90
46 47 4.701651 AGGTGCACGTATACAGTAGTACAA 59.298 41.667 10.95 0.00 31.96 2.41
47 48 5.032863 GGTGCACGTATACAGTAGTACAAG 58.967 45.833 11.45 0.00 31.96 3.16
48 49 5.392380 GGTGCACGTATACAGTAGTACAAGT 60.392 44.000 11.45 3.51 31.96 3.16
49 50 6.183360 GGTGCACGTATACAGTAGTACAAGTA 60.183 42.308 11.45 5.66 31.96 2.24
50 51 7.412853 GTGCACGTATACAGTAGTACAAGTAT 58.587 38.462 17.29 17.29 31.96 2.12
51 52 7.375280 GTGCACGTATACAGTAGTACAAGTATG 59.625 40.741 20.18 11.84 31.96 2.39
52 53 6.359087 GCACGTATACAGTAGTACAAGTATGC 59.641 42.308 20.18 18.42 31.96 3.14
53 54 6.854892 CACGTATACAGTAGTACAAGTATGCC 59.145 42.308 20.18 13.18 31.96 4.40
54 55 6.075918 CGTATACAGTAGTACAAGTATGCCG 58.924 44.000 20.18 17.95 31.96 5.69
55 56 3.795623 ACAGTAGTACAAGTATGCCGG 57.204 47.619 0.00 0.00 0.00 6.13
56 57 3.359033 ACAGTAGTACAAGTATGCCGGA 58.641 45.455 5.05 0.00 0.00 5.14
57 58 3.380637 ACAGTAGTACAAGTATGCCGGAG 59.619 47.826 5.05 0.00 0.00 4.63
58 59 3.380637 CAGTAGTACAAGTATGCCGGAGT 59.619 47.826 5.05 0.00 0.00 3.85
68 69 7.502696 ACAAGTATGCCGGAGTAATTATTGTA 58.497 34.615 5.05 0.00 0.00 2.41
77 78 7.064728 GCCGGAGTAATTATTGTATCTGAATCC 59.935 40.741 5.05 0.00 0.00 3.01
78 79 7.275779 CCGGAGTAATTATTGTATCTGAATCCG 59.724 40.741 0.00 0.00 42.21 4.18
83 84 9.477484 GTAATTATTGTATCTGAATCCGTGTCT 57.523 33.333 0.00 0.00 0.00 3.41
84 85 8.594881 AATTATTGTATCTGAATCCGTGTCTC 57.405 34.615 0.00 0.00 0.00 3.36
85 86 5.598416 ATTGTATCTGAATCCGTGTCTCA 57.402 39.130 0.00 0.00 0.00 3.27
86 87 4.639135 TGTATCTGAATCCGTGTCTCAG 57.361 45.455 0.00 0.00 38.34 3.35
97 98 1.474478 CGTGTCTCAGCTGTATGACCT 59.526 52.381 23.42 0.00 0.00 3.85
127 128 7.545265 GCACTGAATAATTACATGAGCCAAAAA 59.455 33.333 0.00 0.00 0.00 1.94
130 131 8.984891 TGAATAATTACATGAGCCAAAAACAG 57.015 30.769 0.00 0.00 0.00 3.16
134 135 5.699097 TTACATGAGCCAAAAACAGTACC 57.301 39.130 0.00 0.00 0.00 3.34
135 136 2.552315 ACATGAGCCAAAAACAGTACCG 59.448 45.455 0.00 0.00 0.00 4.02
140 141 1.269361 GCCAAAAACAGTACCGTTGGG 60.269 52.381 0.00 0.00 39.33 4.12
142 143 2.292292 CCAAAAACAGTACCGTTGGGAG 59.708 50.000 0.00 0.00 36.00 4.30
143 144 2.265589 AAAACAGTACCGTTGGGAGG 57.734 50.000 0.00 0.00 36.97 4.30
145 146 0.472352 AACAGTACCGTTGGGAGGGA 60.472 55.000 0.00 0.00 36.97 4.20
146 147 0.252558 ACAGTACCGTTGGGAGGGAT 60.253 55.000 0.00 0.00 36.97 3.85
147 148 1.007479 ACAGTACCGTTGGGAGGGATA 59.993 52.381 0.00 0.00 36.97 2.59
148 149 2.112998 CAGTACCGTTGGGAGGGATAA 58.887 52.381 0.00 0.00 36.97 1.75
149 150 2.102588 CAGTACCGTTGGGAGGGATAAG 59.897 54.545 0.00 0.00 36.97 1.73
150 151 2.023695 AGTACCGTTGGGAGGGATAAGA 60.024 50.000 0.00 0.00 36.97 2.10
151 152 2.191981 ACCGTTGGGAGGGATAAGAT 57.808 50.000 0.00 0.00 36.97 2.40
152 153 2.047830 ACCGTTGGGAGGGATAAGATC 58.952 52.381 0.00 0.00 36.97 2.75
153 154 1.348036 CCGTTGGGAGGGATAAGATCC 59.652 57.143 0.00 0.00 41.83 3.36
154 155 4.242622 CCGTTGGGAGGGATAAGATCCG 62.243 59.091 0.00 0.00 42.90 4.18
162 163 2.447244 GGATAAGATCCGTCTGCCAG 57.553 55.000 0.00 0.00 40.13 4.85
163 164 1.964223 GGATAAGATCCGTCTGCCAGA 59.036 52.381 0.00 0.00 40.13 3.86
164 165 2.029470 GGATAAGATCCGTCTGCCAGAG 60.029 54.545 0.00 0.00 40.13 3.35
165 166 2.437085 TAAGATCCGTCTGCCAGAGA 57.563 50.000 0.00 0.00 34.13 3.10
166 167 0.820871 AAGATCCGTCTGCCAGAGAC 59.179 55.000 0.00 0.00 46.91 3.36
172 173 3.223661 GTCTGCCAGAGACTTGGTG 57.776 57.895 0.00 1.45 46.85 4.17
173 174 0.952984 GTCTGCCAGAGACTTGGTGC 60.953 60.000 0.00 0.00 46.85 5.01
174 175 1.071987 CTGCCAGAGACTTGGTGCA 59.928 57.895 0.00 0.00 40.49 4.57
175 176 0.322277 CTGCCAGAGACTTGGTGCAT 60.322 55.000 0.00 0.00 40.49 3.96
176 177 0.321919 TGCCAGAGACTTGGTGCATC 60.322 55.000 0.00 0.00 40.49 3.91
177 178 0.035630 GCCAGAGACTTGGTGCATCT 60.036 55.000 0.00 0.00 40.49 2.90
178 179 1.612726 GCCAGAGACTTGGTGCATCTT 60.613 52.381 0.00 0.00 40.49 2.40
179 180 2.354259 CCAGAGACTTGGTGCATCTTC 58.646 52.381 0.00 0.00 33.38 2.87
180 181 2.027377 CCAGAGACTTGGTGCATCTTCT 60.027 50.000 0.00 0.00 33.38 2.85
181 182 3.196469 CCAGAGACTTGGTGCATCTTCTA 59.804 47.826 0.00 0.00 33.38 2.10
182 183 4.431809 CAGAGACTTGGTGCATCTTCTAG 58.568 47.826 0.00 0.00 0.00 2.43
183 184 3.118811 AGAGACTTGGTGCATCTTCTAGC 60.119 47.826 0.00 0.00 0.00 3.42
184 185 1.929836 GACTTGGTGCATCTTCTAGCG 59.070 52.381 0.00 0.00 0.00 4.26
185 186 0.654683 CTTGGTGCATCTTCTAGCGC 59.345 55.000 0.00 0.00 40.36 5.92
186 187 0.250234 TTGGTGCATCTTCTAGCGCT 59.750 50.000 17.26 17.26 40.86 5.92
187 188 0.250234 TGGTGCATCTTCTAGCGCTT 59.750 50.000 18.68 0.00 40.86 4.68
188 189 1.339055 TGGTGCATCTTCTAGCGCTTT 60.339 47.619 18.68 0.00 40.86 3.51
189 190 1.063174 GGTGCATCTTCTAGCGCTTTG 59.937 52.381 18.68 9.79 40.86 2.77
190 191 0.729116 TGCATCTTCTAGCGCTTTGC 59.271 50.000 18.68 15.65 46.98 3.68
200 201 2.881441 GCGCTTTGCCATGATGATG 58.119 52.632 0.00 0.00 37.76 3.07
201 202 1.213094 GCGCTTTGCCATGATGATGC 61.213 55.000 0.00 0.00 37.76 3.91
202 203 0.596600 CGCTTTGCCATGATGATGCC 60.597 55.000 0.00 0.00 0.00 4.40
203 204 0.596600 GCTTTGCCATGATGATGCCG 60.597 55.000 0.00 0.00 0.00 5.69
204 205 0.742505 CTTTGCCATGATGATGCCGT 59.257 50.000 0.00 0.00 0.00 5.68
217 218 4.589675 GCCGTCCACCCACCCAAA 62.590 66.667 0.00 0.00 0.00 3.28
218 219 2.282180 CCGTCCACCCACCCAAAG 60.282 66.667 0.00 0.00 0.00 2.77
219 220 2.983592 CGTCCACCCACCCAAAGC 60.984 66.667 0.00 0.00 0.00 3.51
220 221 2.983592 GTCCACCCACCCAAAGCG 60.984 66.667 0.00 0.00 0.00 4.68
222 223 2.203422 CCACCCACCCAAAGCGAA 60.203 61.111 0.00 0.00 0.00 4.70
223 224 1.830408 CCACCCACCCAAAGCGAAA 60.830 57.895 0.00 0.00 0.00 3.46
224 225 1.659794 CACCCACCCAAAGCGAAAG 59.340 57.895 0.00 0.00 0.00 2.62
244 245 2.883386 AGCACTGCTTTCCTTTCTTCTG 59.117 45.455 0.00 0.00 33.89 3.02
271 272 1.449423 CCCACATCCAACGCATCGA 60.449 57.895 0.00 0.00 0.00 3.59
279 283 1.354337 CCAACGCATCGACCACTGAG 61.354 60.000 0.00 0.00 0.00 3.35
297 301 2.034939 TGAGCAAACACATGAGCCAAAG 59.965 45.455 0.00 0.00 0.00 2.77
320 324 3.231965 CATTACGTACTATTCCGAGGCG 58.768 50.000 0.00 0.00 0.00 5.52
326 330 0.680061 ACTATTCCGAGGCGGGATTC 59.320 55.000 4.79 0.00 43.57 2.52
341 355 3.553922 CGGGATTCCTATCTTGACTGCTC 60.554 52.174 2.01 0.00 0.00 4.26
417 457 3.342627 CGTCGCGTTGCCTGGAAA 61.343 61.111 5.77 0.00 0.00 3.13
432 476 0.446616 GGAAAAGATCCGCGTCCAAC 59.553 55.000 4.92 0.00 38.79 3.77
438 482 3.310860 ATCCGCGTCCAACCTCCAC 62.311 63.158 4.92 0.00 0.00 4.02
510 762 4.571176 GGAGGTATGTTTCCTGTCGATTTC 59.429 45.833 0.00 0.00 35.20 2.17
516 768 3.818773 TGTTTCCTGTCGATTTCTTTCCC 59.181 43.478 0.00 0.00 0.00 3.97
520 772 1.394917 CTGTCGATTTCTTTCCCGCTG 59.605 52.381 0.00 0.00 0.00 5.18
560 812 8.602424 TGGATCTAAAAACTGATTACTTCTCCA 58.398 33.333 0.00 0.00 0.00 3.86
563 815 7.450074 TCTAAAAACTGATTACTTCTCCAGCA 58.550 34.615 0.00 0.00 0.00 4.41
565 817 7.530426 AAAAACTGATTACTTCTCCAGCATT 57.470 32.000 0.00 0.00 0.00 3.56
566 818 7.530426 AAAACTGATTACTTCTCCAGCATTT 57.470 32.000 0.00 0.00 0.00 2.32
567 819 6.506500 AACTGATTACTTCTCCAGCATTTG 57.493 37.500 0.00 0.00 0.00 2.32
568 820 5.564550 ACTGATTACTTCTCCAGCATTTGT 58.435 37.500 0.00 0.00 0.00 2.83
569 821 5.413833 ACTGATTACTTCTCCAGCATTTGTG 59.586 40.000 0.00 0.00 0.00 3.33
570 822 5.316167 TGATTACTTCTCCAGCATTTGTGT 58.684 37.500 0.00 0.00 0.00 3.72
582 881 0.752054 ATTTGTGTTGGGTGGCAGTG 59.248 50.000 0.00 0.00 0.00 3.66
583 882 0.323816 TTTGTGTTGGGTGGCAGTGA 60.324 50.000 0.00 0.00 0.00 3.41
584 883 0.323816 TTGTGTTGGGTGGCAGTGAA 60.324 50.000 0.00 0.00 0.00 3.18
585 884 0.323816 TGTGTTGGGTGGCAGTGAAA 60.324 50.000 0.00 0.00 0.00 2.69
587 886 1.205893 GTGTTGGGTGGCAGTGAAAAA 59.794 47.619 0.00 0.00 0.00 1.94
588 887 1.205893 TGTTGGGTGGCAGTGAAAAAC 59.794 47.619 0.00 0.00 0.00 2.43
589 888 1.480545 GTTGGGTGGCAGTGAAAAACT 59.519 47.619 0.00 0.00 40.93 2.66
590 889 1.859302 TGGGTGGCAGTGAAAAACTT 58.141 45.000 0.00 0.00 36.83 2.66
591 890 1.480137 TGGGTGGCAGTGAAAAACTTG 59.520 47.619 0.00 0.00 36.83 3.16
592 891 1.570813 GGTGGCAGTGAAAAACTTGC 58.429 50.000 0.00 0.00 36.83 4.01
612 911 3.084786 GCTAGCAAGAACCATGGAGTTT 58.915 45.455 21.47 1.30 0.00 2.66
628 927 4.263639 TGGAGTTTCCAATCATTCAGAGCT 60.264 41.667 0.00 0.00 45.00 4.09
630 929 4.914983 AGTTTCCAATCATTCAGAGCTGA 58.085 39.130 0.00 0.00 37.91 4.26
631 930 4.699257 AGTTTCCAATCATTCAGAGCTGAC 59.301 41.667 0.00 0.00 39.66 3.51
632 931 3.272574 TCCAATCATTCAGAGCTGACC 57.727 47.619 0.00 0.00 39.66 4.02
643 942 3.695606 GCTGACCGCTGACCTGGA 61.696 66.667 0.00 0.00 35.14 3.86
644 943 3.023949 GCTGACCGCTGACCTGGAT 62.024 63.158 0.00 0.00 35.14 3.41
645 944 1.153489 CTGACCGCTGACCTGGATG 60.153 63.158 0.00 0.00 0.00 3.51
647 946 0.613572 TGACCGCTGACCTGGATGTA 60.614 55.000 0.00 0.00 0.00 2.29
650 949 0.537188 CCGCTGACCTGGATGTAACT 59.463 55.000 0.00 0.00 0.00 2.24
651 950 1.066143 CCGCTGACCTGGATGTAACTT 60.066 52.381 0.00 0.00 0.00 2.66
652 951 2.271800 CGCTGACCTGGATGTAACTTC 58.728 52.381 0.00 0.00 0.00 3.01
684 1008 3.321968 TCTTGCTGTTCTGCTCTACTCAA 59.678 43.478 3.65 0.00 0.00 3.02
687 1011 4.645535 TGCTGTTCTGCTCTACTCAAATT 58.354 39.130 3.65 0.00 0.00 1.82
688 1012 5.065914 TGCTGTTCTGCTCTACTCAAATTT 58.934 37.500 3.65 0.00 0.00 1.82
689 1013 5.532406 TGCTGTTCTGCTCTACTCAAATTTT 59.468 36.000 0.00 0.00 0.00 1.82
690 1014 6.039717 TGCTGTTCTGCTCTACTCAAATTTTT 59.960 34.615 0.00 0.00 0.00 1.94
691 1015 6.580416 GCTGTTCTGCTCTACTCAAATTTTTC 59.420 38.462 0.00 0.00 0.00 2.29
692 1016 7.566760 TGTTCTGCTCTACTCAAATTTTTCA 57.433 32.000 0.00 0.00 0.00 2.69
694 1018 7.066887 TGTTCTGCTCTACTCAAATTTTTCACA 59.933 33.333 0.00 0.00 0.00 3.58
697 1021 6.913170 TGCTCTACTCAAATTTTTCACATCC 58.087 36.000 0.00 0.00 0.00 3.51
698 1022 6.489700 TGCTCTACTCAAATTTTTCACATCCA 59.510 34.615 0.00 0.00 0.00 3.41
699 1023 6.803807 GCTCTACTCAAATTTTTCACATCCAC 59.196 38.462 0.00 0.00 0.00 4.02
700 1024 7.522073 GCTCTACTCAAATTTTTCACATCCACA 60.522 37.037 0.00 0.00 0.00 4.17
701 1025 7.874940 TCTACTCAAATTTTTCACATCCACAG 58.125 34.615 0.00 0.00 0.00 3.66
705 1038 6.347696 TCAAATTTTTCACATCCACAGCTTT 58.652 32.000 0.00 0.00 0.00 3.51
819 1419 2.435059 GCTTCCGCTTCCGCTTCT 60.435 61.111 0.00 0.00 0.00 2.85
836 1486 1.201429 TCTGCTTCCTTGTCCCCTCC 61.201 60.000 0.00 0.00 0.00 4.30
837 1487 1.151810 TGCTTCCTTGTCCCCTCCT 60.152 57.895 0.00 0.00 0.00 3.69
838 1488 0.118346 TGCTTCCTTGTCCCCTCCTA 59.882 55.000 0.00 0.00 0.00 2.94
839 1489 1.274416 TGCTTCCTTGTCCCCTCCTAT 60.274 52.381 0.00 0.00 0.00 2.57
873 1523 2.091112 CGCTGTGTTCTGCTCTCCG 61.091 63.158 0.00 0.00 36.58 4.63
917 1894 6.623767 GCTTGGTCCAAATCTAGCTAAGTTTG 60.624 42.308 17.43 17.43 0.00 2.93
926 1903 1.212751 GCTAAGTTTGGGCTTGGCG 59.787 57.895 0.00 0.00 41.67 5.69
930 1907 0.109723 AAGTTTGGGCTTGGCGACTA 59.890 50.000 0.00 0.00 0.00 2.59
962 1967 3.285484 CTTGGATTGCATTACAGCTCCT 58.715 45.455 0.00 0.00 34.53 3.69
972 1977 5.887598 TGCATTACAGCTCCTTACATTCATT 59.112 36.000 0.00 0.00 34.99 2.57
998 2034 1.067354 GCAGTTTTCCAGCTGATTGGG 60.067 52.381 17.39 0.00 38.81 4.12
1076 2112 2.840038 TCATGGATGAGTACAACCTGCT 59.160 45.455 0.00 0.00 39.30 4.24
1107 2143 3.987868 TCAAGAAAGACGTCCGATTTCTG 59.012 43.478 23.89 18.75 41.25 3.02
1279 3512 3.678806 CGTTGAAGGTATTCAGCAGCCTA 60.679 47.826 5.82 0.00 45.89 3.93
1326 3559 3.326006 AGCTCAAGAACAAGATGGTCAGA 59.674 43.478 0.00 0.00 36.30 3.27
1476 3709 1.728971 GCAATTGCTATCGATCCTCGG 59.271 52.381 23.21 0.00 38.09 4.63
1485 3718 3.849951 GATCCTCGGCTTCGGGCA 61.850 66.667 3.98 0.00 44.01 5.36
1524 3757 0.630673 AGCTGGTGGGCATTTATGGA 59.369 50.000 0.00 0.00 34.17 3.41
1530 3763 3.011144 TGGTGGGCATTTATGGAAAGAGA 59.989 43.478 0.00 0.00 0.00 3.10
1545 3778 6.256819 TGGAAAGAGAGATGAAGACCTCTTA 58.743 40.000 0.00 0.00 43.00 2.10
1684 3920 6.885952 TTAAAGGTGATTTTGATTGTCGGA 57.114 33.333 0.00 0.00 32.01 4.55
1939 4178 4.698201 TTGTAACCATCACACAGAAGGA 57.302 40.909 0.00 0.00 37.28 3.36
1952 4196 4.177026 CACAGAAGGACGGTTCAGAATAG 58.823 47.826 0.00 0.00 0.00 1.73
1962 4206 6.801862 GGACGGTTCAGAATAGTTTTTCATTG 59.198 38.462 0.00 0.00 0.00 2.82
2119 4415 6.414408 AAGAAATTCATCTCAGCGTTGTAG 57.586 37.500 0.00 0.00 0.00 2.74
2205 4570 2.699954 CATCGTTCACCAAAGGCTACT 58.300 47.619 0.00 0.00 0.00 2.57
2256 4621 2.665056 TCGCTCTTCGATATCACGTC 57.335 50.000 3.12 0.00 43.16 4.34
2416 4782 6.294620 CCGATCTTTCCAATAGACCTACCTAC 60.295 46.154 0.00 0.00 0.00 3.18
2417 4783 6.264744 CGATCTTTCCAATAGACCTACCTACA 59.735 42.308 0.00 0.00 0.00 2.74
2748 5199 8.776470 GTGTATAGACCTTACACTGATACTCTC 58.224 40.741 6.70 0.00 43.84 3.20
2962 5413 3.520721 TGATGATTCCAGAAGGCTCTTCA 59.479 43.478 14.76 0.00 32.82 3.02
3351 5806 2.158460 AGGGACTAGCCTGTTTTTGCTT 60.158 45.455 0.00 0.00 39.00 3.91
3432 5887 4.166144 AGTTTAGGCCAGGTATATGCTTGT 59.834 41.667 5.01 0.00 0.00 3.16
3438 5893 2.866156 CCAGGTATATGCTTGTCGTGTG 59.134 50.000 2.40 0.00 0.00 3.82
3467 5922 2.911484 GGTTCTGGACCTTATCTGCAG 58.089 52.381 7.63 7.63 45.55 4.41
3502 5957 8.071122 TGAAGCAAAGTTTGTTAATGTATTGC 57.929 30.769 16.70 0.00 41.52 3.56
3547 6005 1.127951 CACAAAGTAATGTCCGCCGTC 59.872 52.381 0.00 0.00 0.00 4.79
3565 6023 4.184629 CCGTCTGTCCCTTCAGAATAAAG 58.815 47.826 0.00 0.00 44.48 1.85
3644 6102 6.215636 AGGTCAATTACTATCTTTCCACCTGT 59.784 38.462 0.00 0.00 0.00 4.00
3654 6112 8.041323 ACTATCTTTCCACCTGTTGTTAGTATG 58.959 37.037 0.00 0.00 0.00 2.39
3796 6254 2.458620 ACCTTGGTCTAGCAGGTACTC 58.541 52.381 0.00 0.00 39.28 2.59
3834 6292 3.368427 CGACTGAGATAGGAAACCTGCAA 60.368 47.826 0.00 0.00 34.61 4.08
3857 6315 1.909700 TTGGAGGTGTTGGATCTTGC 58.090 50.000 0.00 0.00 0.00 4.01
3861 6319 1.815003 GAGGTGTTGGATCTTGCAAGG 59.185 52.381 25.73 8.01 0.00 3.61
3865 6323 3.119352 GGTGTTGGATCTTGCAAGGAATC 60.119 47.826 25.73 20.38 0.00 2.52
3866 6324 2.749076 TGTTGGATCTTGCAAGGAATCG 59.251 45.455 25.73 0.24 0.00 3.34
3869 6327 3.531538 TGGATCTTGCAAGGAATCGTAC 58.468 45.455 25.73 10.32 0.00 3.67
3990 6454 8.180267 CAGAATCTTACATCCATTGAAGTGTTC 58.820 37.037 0.00 0.00 0.00 3.18
4017 6481 3.520569 GCTCTTGGTCTCTCTGAACATC 58.479 50.000 0.00 0.00 42.70 3.06
4039 6503 0.752743 TGCACAAGAGCTTGGCAACT 60.753 50.000 17.82 0.00 44.45 3.16
4371 6838 2.626683 GGACATGGAAATCATTGGGGGT 60.627 50.000 0.00 0.00 32.92 4.95
4384 6851 1.152333 GGGGGTTTGCTGTCCCTTT 60.152 57.895 9.70 0.00 43.00 3.11
4403 6870 1.598130 GCCGGCTCCGCATAAAGAT 60.598 57.895 22.15 0.00 38.24 2.40
4431 6898 2.297033 CCAAACACAATGGCTGCTAGTT 59.703 45.455 0.00 0.00 0.00 2.24
4436 6903 2.880890 CACAATGGCTGCTAGTTATCCC 59.119 50.000 0.00 0.00 0.00 3.85
4471 6938 3.802685 CCGCTGTATGGTAGACTTTAAGC 59.197 47.826 0.00 0.00 0.00 3.09
4512 6979 4.201950 GCGCAGATAATGTTTGAATCAGGT 60.202 41.667 0.30 0.00 0.00 4.00
4521 6988 0.968405 TTGAATCAGGTGCTTTGCCC 59.032 50.000 0.00 0.00 0.00 5.36
4580 7047 3.101437 TGGCGAAAGAGGATGGTAACTA 58.899 45.455 0.00 0.00 37.61 2.24
4632 7099 2.045438 TCCATTCGGCGGCATGTT 60.045 55.556 10.53 0.00 0.00 2.71
4642 7109 2.344142 CGGCGGCATGTTATTGTTTTTC 59.656 45.455 10.53 0.00 0.00 2.29
4648 7115 6.020678 GCGGCATGTTATTGTTTTTCTGTATC 60.021 38.462 0.00 0.00 0.00 2.24
4649 7116 6.472163 CGGCATGTTATTGTTTTTCTGTATCC 59.528 38.462 0.00 0.00 0.00 2.59
4737 7204 1.989586 CCCAACCATCCCCCGATTATA 59.010 52.381 0.00 0.00 0.00 0.98
4747 7214 6.716628 CCATCCCCCGATTATAATTGATATGG 59.283 42.308 13.48 14.14 0.00 2.74
4754 7221 7.338710 CCGATTATAATTGATATGGTCCCACT 58.661 38.462 13.48 0.00 0.00 4.00
4763 7230 5.155161 TGATATGGTCCCACTTATAGCAGT 58.845 41.667 0.00 0.00 0.00 4.40
4789 7264 2.806244 ACTCATGTCGCACCAAACTAAC 59.194 45.455 0.00 0.00 0.00 2.34
4835 7355 1.819288 TCTGAATGACGGACTGACCTC 59.181 52.381 0.00 0.00 36.31 3.85
4847 7371 4.322049 CGGACTGACCTCATTACTTTCTGT 60.322 45.833 0.00 0.00 36.31 3.41
4880 7404 2.168521 TCTCTAAATCTCCCAAGGTGCG 59.831 50.000 0.00 0.00 0.00 5.34
4889 7413 1.105167 CCCAAGGTGCGCATGATGAT 61.105 55.000 15.91 0.00 0.00 2.45
4893 7417 2.809696 CAAGGTGCGCATGATGATGATA 59.190 45.455 15.91 0.00 0.00 2.15
4914 7464 8.078060 TGATATGTGTGAGGAGAACTGATTTA 57.922 34.615 0.00 0.00 0.00 1.40
4925 7475 5.330455 AGAACTGATTTATGACGCAGAGA 57.670 39.130 0.00 0.00 32.86 3.10
4934 7486 2.643933 TGACGCAGAGAGATTCACAG 57.356 50.000 0.00 0.00 0.00 3.66
4968 7534 6.091713 GTGTGCTCTTGGTATGTACGTATTTT 59.908 38.462 0.00 0.00 0.00 1.82
4969 7535 6.091577 TGTGCTCTTGGTATGTACGTATTTTG 59.908 38.462 0.00 0.00 0.00 2.44
4971 7537 6.091577 TGCTCTTGGTATGTACGTATTTTGTG 59.908 38.462 0.00 0.00 0.00 3.33
5021 7839 3.491276 CCATCTCTAGAGCTCAGCTTGTG 60.491 52.174 17.77 7.73 39.88 3.33
5051 8230 6.767524 TTTGAGAAAAGTAAAGTTGGCAGA 57.232 33.333 0.00 0.00 0.00 4.26
5107 8286 5.330295 CAAGTGCTGATGAAAGCTAATGAC 58.670 41.667 0.00 0.00 43.90 3.06
5128 8324 8.757982 ATGACTTTAGGATGTTTATGCAATCT 57.242 30.769 0.00 0.00 0.00 2.40
5129 8325 8.579850 TGACTTTAGGATGTTTATGCAATCTT 57.420 30.769 0.00 0.00 0.00 2.40
5130 8326 8.461222 TGACTTTAGGATGTTTATGCAATCTTG 58.539 33.333 0.00 0.00 0.00 3.02
5131 8327 8.353423 ACTTTAGGATGTTTATGCAATCTTGT 57.647 30.769 0.00 0.00 0.00 3.16
5132 8328 9.461312 ACTTTAGGATGTTTATGCAATCTTGTA 57.539 29.630 0.00 0.00 0.00 2.41
5133 8329 9.941664 CTTTAGGATGTTTATGCAATCTTGTAG 57.058 33.333 0.00 0.00 0.00 2.74
5134 8330 9.679661 TTTAGGATGTTTATGCAATCTTGTAGA 57.320 29.630 0.00 0.00 0.00 2.59
5142 8338 7.969536 TTATGCAATCTTGTAGAAGGATAGC 57.030 36.000 0.00 0.87 0.00 2.97
5150 8346 5.594725 TCTTGTAGAAGGATAGCTGGTAGTG 59.405 44.000 0.00 0.00 0.00 2.74
5156 8367 1.343069 GATAGCTGGTAGTGGGGGAG 58.657 60.000 0.00 0.00 0.00 4.30
5160 8371 0.399233 GCTGGTAGTGGGGGAGAGAT 60.399 60.000 0.00 0.00 0.00 2.75
5181 8392 7.559170 AGAGATGTAGATTTTGGGAAGATTTGG 59.441 37.037 0.00 0.00 0.00 3.28
5182 8393 7.184862 AGATGTAGATTTTGGGAAGATTTGGT 58.815 34.615 0.00 0.00 0.00 3.67
5207 8422 4.322057 AGGGGATGTTGATTTTAGCTGT 57.678 40.909 0.00 0.00 0.00 4.40
5237 8672 8.818057 GTGACAAGTACTCCATGTTATACAATC 58.182 37.037 0.00 0.00 0.00 2.67
5239 8674 8.948631 ACAAGTACTCCATGTTATACAATCTG 57.051 34.615 0.00 0.00 0.00 2.90
5288 8724 5.451520 GCTCCCGAGTTCTAGCACTAATTTA 60.452 44.000 0.00 0.00 35.05 1.40
5386 9029 7.557719 AGGGGTATTTTCTGTTCATTCTATGTG 59.442 37.037 0.00 0.00 0.00 3.21
5395 9038 7.661968 TCTGTTCATTCTATGTGTATAGCTCC 58.338 38.462 0.00 0.00 36.92 4.70
5401 9044 4.726583 TCTATGTGTATAGCTCCCGAAGT 58.273 43.478 0.00 0.00 36.92 3.01
5417 9061 4.320202 CCCGAAGTTCACAAATGAAACGAT 60.320 41.667 3.32 0.00 46.40 3.73
5550 9262 4.098807 GTGGTGTGGTACAGGAAAATTGTT 59.901 41.667 0.00 0.00 41.80 2.83
5552 9270 5.163499 TGGTGTGGTACAGGAAAATTGTTTC 60.163 40.000 0.00 0.00 41.80 2.78
5586 9305 8.235230 AGTAGAAAAGAGTCAGGGGATCATATA 58.765 37.037 0.00 0.00 0.00 0.86
5634 9355 5.722021 ATATTTGGAACACCTGTGGTTTC 57.278 39.130 1.91 0.00 39.29 2.78
5644 9365 4.039488 ACACCTGTGGTTTCGATACAGTTA 59.961 41.667 8.29 0.00 40.04 2.24
5728 9517 5.073311 TGGTCTATTTGAAGAACGAGGAG 57.927 43.478 0.00 0.00 35.87 3.69
5770 9559 5.930209 ATTTTTCCTATGGATCCCAGCTA 57.070 39.130 9.90 0.00 36.75 3.32
5876 9667 2.202987 GCTGGTGGCATCCGAGAG 60.203 66.667 0.00 0.00 41.35 3.20
5877 9668 2.202987 CTGGTGGCATCCGAGAGC 60.203 66.667 0.00 0.00 0.00 4.09
5888 9679 1.227497 CCGAGAGCTGAAGGATGGC 60.227 63.158 0.00 0.00 0.00 4.40
5889 9680 1.519246 CGAGAGCTGAAGGATGGCA 59.481 57.895 0.00 0.00 0.00 4.92
5890 9681 0.106335 CGAGAGCTGAAGGATGGCAT 59.894 55.000 0.00 0.00 0.00 4.40
5891 9682 1.873069 CGAGAGCTGAAGGATGGCATC 60.873 57.143 19.23 19.23 0.00 3.91
5892 9683 1.417145 GAGAGCTGAAGGATGGCATCT 59.583 52.381 25.48 8.22 0.00 2.90
5893 9684 1.141254 AGAGCTGAAGGATGGCATCTG 59.859 52.381 25.48 12.39 0.00 2.90
5894 9685 1.140452 GAGCTGAAGGATGGCATCTGA 59.860 52.381 25.48 1.60 0.00 3.27
5895 9686 1.141254 AGCTGAAGGATGGCATCTGAG 59.859 52.381 25.48 12.38 0.00 3.35
5896 9687 1.140452 GCTGAAGGATGGCATCTGAGA 59.860 52.381 25.48 8.24 0.00 3.27
5897 9688 2.421107 GCTGAAGGATGGCATCTGAGAA 60.421 50.000 25.48 8.48 0.00 2.87
5898 9689 3.882444 CTGAAGGATGGCATCTGAGAAA 58.118 45.455 25.48 7.52 0.00 2.52
5899 9690 4.462133 CTGAAGGATGGCATCTGAGAAAT 58.538 43.478 25.48 5.80 0.00 2.17
5900 9691 4.863548 TGAAGGATGGCATCTGAGAAATT 58.136 39.130 25.48 10.05 0.00 1.82
5901 9692 4.643334 TGAAGGATGGCATCTGAGAAATTG 59.357 41.667 25.48 0.00 0.00 2.32
5902 9693 4.246712 AGGATGGCATCTGAGAAATTGT 57.753 40.909 25.48 0.00 0.00 2.71
5903 9694 3.952323 AGGATGGCATCTGAGAAATTGTG 59.048 43.478 25.48 0.00 0.00 3.33
5904 9695 3.698040 GGATGGCATCTGAGAAATTGTGT 59.302 43.478 25.48 0.00 0.00 3.72
5905 9696 4.439700 GGATGGCATCTGAGAAATTGTGTG 60.440 45.833 25.48 0.00 0.00 3.82
5906 9697 3.753815 TGGCATCTGAGAAATTGTGTGA 58.246 40.909 0.00 0.00 0.00 3.58
5907 9698 4.338012 TGGCATCTGAGAAATTGTGTGAT 58.662 39.130 0.00 0.00 0.00 3.06
5908 9699 4.157105 TGGCATCTGAGAAATTGTGTGATG 59.843 41.667 0.00 0.00 34.66 3.07
5909 9700 4.397103 GGCATCTGAGAAATTGTGTGATGA 59.603 41.667 0.00 0.00 33.74 2.92
5910 9701 5.448768 GGCATCTGAGAAATTGTGTGATGAG 60.449 44.000 0.00 0.00 33.74 2.90
5911 9702 5.570344 CATCTGAGAAATTGTGTGATGAGC 58.430 41.667 0.00 0.00 33.74 4.26
5912 9703 4.903054 TCTGAGAAATTGTGTGATGAGCT 58.097 39.130 0.00 0.00 0.00 4.09
5913 9704 5.311265 TCTGAGAAATTGTGTGATGAGCTT 58.689 37.500 0.00 0.00 0.00 3.74
5914 9705 5.410746 TCTGAGAAATTGTGTGATGAGCTTC 59.589 40.000 0.00 0.00 0.00 3.86
5915 9706 5.311265 TGAGAAATTGTGTGATGAGCTTCT 58.689 37.500 0.00 0.00 0.00 2.85
5916 9707 5.766670 TGAGAAATTGTGTGATGAGCTTCTT 59.233 36.000 0.00 0.00 0.00 2.52
5917 9708 6.263842 TGAGAAATTGTGTGATGAGCTTCTTT 59.736 34.615 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.194542 GCCAGAGACTTCATGACACTACT 59.805 47.826 0.00 0.00 0.00 2.57
1 2 3.056536 TGCCAGAGACTTCATGACACTAC 60.057 47.826 0.00 0.00 0.00 2.73
3 4 1.973515 TGCCAGAGACTTCATGACACT 59.026 47.619 0.00 0.00 0.00 3.55
6 7 1.277557 ACCTGCCAGAGACTTCATGAC 59.722 52.381 0.00 0.00 0.00 3.06
7 8 1.277273 CACCTGCCAGAGACTTCATGA 59.723 52.381 0.00 0.00 0.00 3.07
8 9 1.735386 CACCTGCCAGAGACTTCATG 58.265 55.000 0.00 0.00 0.00 3.07
9 10 0.035630 GCACCTGCCAGAGACTTCAT 60.036 55.000 0.00 0.00 34.31 2.57
10 11 1.372683 GCACCTGCCAGAGACTTCA 59.627 57.895 0.00 0.00 34.31 3.02
11 12 0.952984 GTGCACCTGCCAGAGACTTC 60.953 60.000 5.22 0.00 41.18 3.01
12 13 1.072159 GTGCACCTGCCAGAGACTT 59.928 57.895 5.22 0.00 41.18 3.01
13 14 2.746359 GTGCACCTGCCAGAGACT 59.254 61.111 5.22 0.00 41.18 3.24
14 15 2.154798 TACGTGCACCTGCCAGAGAC 62.155 60.000 12.15 0.00 41.18 3.36
15 16 1.257750 ATACGTGCACCTGCCAGAGA 61.258 55.000 12.15 0.00 41.18 3.10
16 17 0.459899 TATACGTGCACCTGCCAGAG 59.540 55.000 12.15 0.00 41.18 3.35
17 18 0.174845 GTATACGTGCACCTGCCAGA 59.825 55.000 12.15 0.00 41.18 3.86
18 19 0.108377 TGTATACGTGCACCTGCCAG 60.108 55.000 12.15 0.00 41.18 4.85
19 20 0.108377 CTGTATACGTGCACCTGCCA 60.108 55.000 12.15 1.05 41.18 4.92
20 21 0.108329 ACTGTATACGTGCACCTGCC 60.108 55.000 12.15 0.00 41.18 4.85
21 22 2.159282 ACTACTGTATACGTGCACCTGC 60.159 50.000 12.15 0.49 42.50 4.85
22 23 3.777465 ACTACTGTATACGTGCACCTG 57.223 47.619 12.15 0.00 0.00 4.00
23 24 4.264253 TGTACTACTGTATACGTGCACCT 58.736 43.478 12.15 1.77 0.00 4.00
24 25 4.621068 TGTACTACTGTATACGTGCACC 57.379 45.455 12.15 0.00 0.00 5.01
25 26 5.634896 ACTTGTACTACTGTATACGTGCAC 58.365 41.667 6.82 6.82 0.00 4.57
26 27 5.885230 ACTTGTACTACTGTATACGTGCA 57.115 39.130 0.00 3.73 0.00 4.57
27 28 6.359087 GCATACTTGTACTACTGTATACGTGC 59.641 42.308 0.00 1.49 0.00 5.34
28 29 6.854892 GGCATACTTGTACTACTGTATACGTG 59.145 42.308 0.00 3.15 0.00 4.49
29 30 6.293081 CGGCATACTTGTACTACTGTATACGT 60.293 42.308 0.00 0.00 0.00 3.57
30 31 6.075918 CGGCATACTTGTACTACTGTATACG 58.924 44.000 0.00 0.00 0.00 3.06
31 32 6.205464 TCCGGCATACTTGTACTACTGTATAC 59.795 42.308 0.00 0.00 0.00 1.47
32 33 6.298361 TCCGGCATACTTGTACTACTGTATA 58.702 40.000 0.00 0.00 0.00 1.47
33 34 5.135383 TCCGGCATACTTGTACTACTGTAT 58.865 41.667 0.00 0.00 0.00 2.29
34 35 4.525996 TCCGGCATACTTGTACTACTGTA 58.474 43.478 0.00 0.00 0.00 2.74
35 36 3.359033 TCCGGCATACTTGTACTACTGT 58.641 45.455 0.00 0.00 0.00 3.55
36 37 3.380637 ACTCCGGCATACTTGTACTACTG 59.619 47.826 0.00 0.00 0.00 2.74
37 38 3.629087 ACTCCGGCATACTTGTACTACT 58.371 45.455 0.00 0.00 0.00 2.57
38 39 5.505173 TTACTCCGGCATACTTGTACTAC 57.495 43.478 0.00 0.00 0.00 2.73
39 40 6.720112 AATTACTCCGGCATACTTGTACTA 57.280 37.500 0.00 0.00 0.00 1.82
40 41 5.609533 AATTACTCCGGCATACTTGTACT 57.390 39.130 0.00 0.00 0.00 2.73
41 42 7.440255 ACAATAATTACTCCGGCATACTTGTAC 59.560 37.037 0.00 0.00 0.00 2.90
42 43 7.502696 ACAATAATTACTCCGGCATACTTGTA 58.497 34.615 0.00 0.00 0.00 2.41
43 44 6.354130 ACAATAATTACTCCGGCATACTTGT 58.646 36.000 0.00 0.00 0.00 3.16
44 45 6.861065 ACAATAATTACTCCGGCATACTTG 57.139 37.500 0.00 0.00 0.00 3.16
45 46 8.594550 AGATACAATAATTACTCCGGCATACTT 58.405 33.333 0.00 0.00 0.00 2.24
46 47 8.035394 CAGATACAATAATTACTCCGGCATACT 58.965 37.037 0.00 0.00 0.00 2.12
47 48 8.033038 TCAGATACAATAATTACTCCGGCATAC 58.967 37.037 0.00 0.00 0.00 2.39
48 49 8.129496 TCAGATACAATAATTACTCCGGCATA 57.871 34.615 0.00 0.00 0.00 3.14
49 50 7.004555 TCAGATACAATAATTACTCCGGCAT 57.995 36.000 0.00 0.00 0.00 4.40
50 51 6.413783 TCAGATACAATAATTACTCCGGCA 57.586 37.500 0.00 0.00 0.00 5.69
51 52 7.064728 GGATTCAGATACAATAATTACTCCGGC 59.935 40.741 0.00 0.00 0.00 6.13
52 53 7.275779 CGGATTCAGATACAATAATTACTCCGG 59.724 40.741 0.00 0.00 0.00 5.14
53 54 7.813148 ACGGATTCAGATACAATAATTACTCCG 59.187 37.037 0.00 0.00 37.92 4.63
54 55 8.926710 CACGGATTCAGATACAATAATTACTCC 58.073 37.037 0.00 0.00 0.00 3.85
55 56 9.477484 ACACGGATTCAGATACAATAATTACTC 57.523 33.333 0.00 0.00 0.00 2.59
56 57 9.477484 GACACGGATTCAGATACAATAATTACT 57.523 33.333 0.00 0.00 0.00 2.24
57 58 9.477484 AGACACGGATTCAGATACAATAATTAC 57.523 33.333 0.00 0.00 0.00 1.89
58 59 9.692749 GAGACACGGATTCAGATACAATAATTA 57.307 33.333 0.00 0.00 0.00 1.40
68 69 2.106566 AGCTGAGACACGGATTCAGAT 58.893 47.619 11.16 3.74 40.54 2.90
77 78 1.474478 AGGTCATACAGCTGAGACACG 59.526 52.381 23.35 2.36 32.79 4.49
78 79 3.697045 AGTAGGTCATACAGCTGAGACAC 59.303 47.826 23.35 17.58 36.79 3.67
83 84 2.166459 GTGCAGTAGGTCATACAGCTGA 59.834 50.000 23.35 4.31 44.78 4.26
84 85 2.167281 AGTGCAGTAGGTCATACAGCTG 59.833 50.000 13.48 13.48 44.78 4.24
85 86 2.167281 CAGTGCAGTAGGTCATACAGCT 59.833 50.000 12.38 0.00 44.78 4.24
86 87 2.166459 TCAGTGCAGTAGGTCATACAGC 59.834 50.000 5.21 5.21 44.76 4.40
97 98 6.483307 GGCTCATGTAATTATTCAGTGCAGTA 59.517 38.462 0.00 0.00 0.00 2.74
127 128 0.252558 ATCCCTCCCAACGGTACTGT 60.253 55.000 0.04 0.04 0.00 3.55
130 131 2.391678 TCTTATCCCTCCCAACGGTAC 58.608 52.381 0.00 0.00 0.00 3.34
134 135 2.841442 GGATCTTATCCCTCCCAACG 57.159 55.000 0.00 0.00 43.88 4.10
143 144 1.964223 TCTGGCAGACGGATCTTATCC 59.036 52.381 14.43 0.00 46.22 2.59
145 146 2.625790 GTCTCTGGCAGACGGATCTTAT 59.374 50.000 14.43 0.00 42.43 1.73
146 147 2.025155 GTCTCTGGCAGACGGATCTTA 58.975 52.381 14.43 0.00 42.43 2.10
147 148 0.820871 GTCTCTGGCAGACGGATCTT 59.179 55.000 14.43 0.00 42.43 2.40
148 149 2.499214 GTCTCTGGCAGACGGATCT 58.501 57.895 14.43 0.00 42.43 2.75
155 156 1.372683 GCACCAAGTCTCTGGCAGA 59.627 57.895 17.68 17.68 40.45 4.26
156 157 0.322277 ATGCACCAAGTCTCTGGCAG 60.322 55.000 8.58 8.58 40.45 4.85
157 158 0.321919 GATGCACCAAGTCTCTGGCA 60.322 55.000 0.00 0.00 40.45 4.92
158 159 0.035630 AGATGCACCAAGTCTCTGGC 60.036 55.000 0.00 0.00 40.45 4.85
159 160 2.027377 AGAAGATGCACCAAGTCTCTGG 60.027 50.000 0.00 0.00 42.68 3.86
160 161 3.331478 AGAAGATGCACCAAGTCTCTG 57.669 47.619 0.00 0.00 0.00 3.35
161 162 3.118811 GCTAGAAGATGCACCAAGTCTCT 60.119 47.826 0.00 0.00 0.00 3.10
162 163 3.194062 GCTAGAAGATGCACCAAGTCTC 58.806 50.000 0.00 0.00 0.00 3.36
163 164 2.417924 CGCTAGAAGATGCACCAAGTCT 60.418 50.000 0.00 0.00 0.00 3.24
164 165 1.929836 CGCTAGAAGATGCACCAAGTC 59.070 52.381 0.00 0.00 0.00 3.01
165 166 2.009042 GCGCTAGAAGATGCACCAAGT 61.009 52.381 0.00 0.00 0.00 3.16
166 167 0.654683 GCGCTAGAAGATGCACCAAG 59.345 55.000 0.00 0.00 0.00 3.61
167 168 0.250234 AGCGCTAGAAGATGCACCAA 59.750 50.000 8.99 0.00 0.00 3.67
168 169 0.250234 AAGCGCTAGAAGATGCACCA 59.750 50.000 12.05 0.00 0.00 4.17
169 170 1.063174 CAAAGCGCTAGAAGATGCACC 59.937 52.381 12.05 0.00 0.00 5.01
170 171 1.530646 GCAAAGCGCTAGAAGATGCAC 60.531 52.381 12.05 0.00 37.77 4.57
171 172 0.729116 GCAAAGCGCTAGAAGATGCA 59.271 50.000 12.05 0.00 37.77 3.96
172 173 0.028637 GGCAAAGCGCTAGAAGATGC 59.971 55.000 12.05 14.34 41.91 3.91
173 174 1.372582 TGGCAAAGCGCTAGAAGATG 58.627 50.000 12.05 4.59 41.91 2.90
174 175 1.945394 CATGGCAAAGCGCTAGAAGAT 59.055 47.619 12.05 0.00 41.91 2.40
175 176 1.066215 TCATGGCAAAGCGCTAGAAGA 60.066 47.619 12.05 0.00 41.91 2.87
176 177 1.372582 TCATGGCAAAGCGCTAGAAG 58.627 50.000 12.05 1.60 41.91 2.85
177 178 1.672363 CATCATGGCAAAGCGCTAGAA 59.328 47.619 12.05 0.00 41.91 2.10
178 179 1.134431 TCATCATGGCAAAGCGCTAGA 60.134 47.619 12.05 0.51 41.91 2.43
179 180 1.302366 TCATCATGGCAAAGCGCTAG 58.698 50.000 12.05 8.07 41.91 3.42
180 181 1.605232 CATCATCATGGCAAAGCGCTA 59.395 47.619 12.05 0.00 41.91 4.26
181 182 0.384309 CATCATCATGGCAAAGCGCT 59.616 50.000 2.64 2.64 41.91 5.92
182 183 1.213094 GCATCATCATGGCAAAGCGC 61.213 55.000 0.00 0.00 41.28 5.92
183 184 2.881441 GCATCATCATGGCAAAGCG 58.119 52.632 0.00 0.00 0.00 4.68
190 191 1.168407 GGTGGACGGCATCATCATGG 61.168 60.000 0.00 0.00 0.00 3.66
191 192 1.168407 GGGTGGACGGCATCATCATG 61.168 60.000 0.00 0.00 0.00 3.07
192 193 1.149174 GGGTGGACGGCATCATCAT 59.851 57.895 0.00 0.00 0.00 2.45
193 194 2.297129 TGGGTGGACGGCATCATCA 61.297 57.895 0.00 0.00 0.00 3.07
194 195 1.819632 GTGGGTGGACGGCATCATC 60.820 63.158 0.00 0.00 0.00 2.92
195 196 2.272146 GTGGGTGGACGGCATCAT 59.728 61.111 0.00 0.00 0.00 2.45
196 197 4.028490 GGTGGGTGGACGGCATCA 62.028 66.667 0.00 0.00 0.00 3.07
197 198 4.796495 GGGTGGGTGGACGGCATC 62.796 72.222 0.00 0.00 0.00 3.91
200 201 4.589675 TTTGGGTGGGTGGACGGC 62.590 66.667 0.00 0.00 0.00 5.68
201 202 2.282180 CTTTGGGTGGGTGGACGG 60.282 66.667 0.00 0.00 0.00 4.79
202 203 2.983592 GCTTTGGGTGGGTGGACG 60.984 66.667 0.00 0.00 0.00 4.79
203 204 2.969300 TTCGCTTTGGGTGGGTGGAC 62.969 60.000 0.00 0.00 0.00 4.02
204 205 2.285889 TTTCGCTTTGGGTGGGTGGA 62.286 55.000 0.00 0.00 0.00 4.02
223 224 2.883386 CAGAAGAAAGGAAAGCAGTGCT 59.117 45.455 13.14 13.14 42.56 4.40
224 225 2.620585 ACAGAAGAAAGGAAAGCAGTGC 59.379 45.455 7.13 7.13 0.00 4.40
226 227 4.103311 AGGTACAGAAGAAAGGAAAGCAGT 59.897 41.667 0.00 0.00 0.00 4.40
228 229 4.706842 AGGTACAGAAGAAAGGAAAGCA 57.293 40.909 0.00 0.00 0.00 3.91
229 230 4.822350 ACAAGGTACAGAAGAAAGGAAAGC 59.178 41.667 0.00 0.00 0.00 3.51
230 231 5.470437 GGACAAGGTACAGAAGAAAGGAAAG 59.530 44.000 0.00 0.00 0.00 2.62
233 234 3.326880 GGGACAAGGTACAGAAGAAAGGA 59.673 47.826 0.00 0.00 0.00 3.36
235 236 4.065789 GTGGGACAAGGTACAGAAGAAAG 58.934 47.826 0.00 0.00 44.16 2.62
236 237 3.456644 TGTGGGACAAGGTACAGAAGAAA 59.543 43.478 0.00 0.00 44.16 2.52
244 245 2.433436 GTTGGATGTGGGACAAGGTAC 58.567 52.381 0.00 0.00 44.16 3.34
271 272 2.224606 CTCATGTGTTTGCTCAGTGGT 58.775 47.619 0.00 0.00 0.00 4.16
279 283 1.787012 CCTTTGGCTCATGTGTTTGC 58.213 50.000 0.00 0.00 0.00 3.68
297 301 3.572584 CCTCGGAATAGTACGTAATGCC 58.427 50.000 5.66 0.00 0.00 4.40
320 324 3.645687 AGAGCAGTCAAGATAGGAATCCC 59.354 47.826 0.00 0.00 31.98 3.85
321 325 4.953940 AGAGCAGTCAAGATAGGAATCC 57.046 45.455 0.00 0.00 31.98 3.01
322 326 5.669477 ACAAGAGCAGTCAAGATAGGAATC 58.331 41.667 0.00 0.00 0.00 2.52
323 327 5.690464 ACAAGAGCAGTCAAGATAGGAAT 57.310 39.130 0.00 0.00 0.00 3.01
326 330 3.937706 CCAACAAGAGCAGTCAAGATAGG 59.062 47.826 0.00 0.00 0.00 2.57
341 355 2.421619 GAGCAGAGGAAGACCAACAAG 58.578 52.381 0.00 0.00 38.94 3.16
415 455 0.036306 AGGTTGGACGCGGATCTTTT 59.964 50.000 12.47 0.00 0.00 2.27
417 457 1.218316 GAGGTTGGACGCGGATCTT 59.782 57.895 12.47 0.00 0.00 2.40
426 470 0.603975 GCACTCAGTGGAGGTTGGAC 60.604 60.000 7.00 0.00 45.81 4.02
432 476 2.125753 GCGAGCACTCAGTGGAGG 60.126 66.667 7.00 0.00 45.81 4.30
461 505 2.046892 CAAGGTCTCCCGGCAGTG 60.047 66.667 0.00 0.00 35.12 3.66
481 525 2.124860 AAACATACCTCCGCGGCC 60.125 61.111 23.51 0.00 35.61 6.13
482 526 2.178235 GGAAACATACCTCCGCGGC 61.178 63.158 23.51 1.13 35.61 6.53
520 772 6.624352 TTTAGATCCATGCATTGCTACTTC 57.376 37.500 10.49 1.26 0.00 3.01
533 785 9.620259 GGAGAAGTAATCAGTTTTTAGATCCAT 57.380 33.333 0.00 0.00 0.00 3.41
560 812 1.047596 TGCCACCCAACACAAATGCT 61.048 50.000 0.00 0.00 0.00 3.79
563 815 0.752054 CACTGCCACCCAACACAAAT 59.248 50.000 0.00 0.00 0.00 2.32
565 817 0.323816 TTCACTGCCACCCAACACAA 60.324 50.000 0.00 0.00 0.00 3.33
566 818 0.323816 TTTCACTGCCACCCAACACA 60.324 50.000 0.00 0.00 0.00 3.72
567 819 0.820871 TTTTCACTGCCACCCAACAC 59.179 50.000 0.00 0.00 0.00 3.32
568 820 1.205893 GTTTTTCACTGCCACCCAACA 59.794 47.619 0.00 0.00 0.00 3.33
569 821 1.480545 AGTTTTTCACTGCCACCCAAC 59.519 47.619 0.00 0.00 32.83 3.77
570 822 1.859302 AGTTTTTCACTGCCACCCAA 58.141 45.000 0.00 0.00 32.83 4.12
589 888 2.040278 ACTCCATGGTTCTTGCTAGCAA 59.960 45.455 27.67 27.67 0.00 3.91
590 889 1.630369 ACTCCATGGTTCTTGCTAGCA 59.370 47.619 14.93 14.93 0.00 3.49
591 890 2.409948 ACTCCATGGTTCTTGCTAGC 57.590 50.000 12.58 8.10 0.00 3.42
592 891 3.691609 GGAAACTCCATGGTTCTTGCTAG 59.308 47.826 12.58 1.08 41.88 3.42
607 906 4.940046 TCAGCTCTGAATGATTGGAAACTC 59.060 41.667 0.00 0.00 36.53 3.01
612 911 2.419159 CGGTCAGCTCTGAATGATTGGA 60.419 50.000 0.54 0.00 41.85 3.53
615 914 1.661341 GCGGTCAGCTCTGAATGATT 58.339 50.000 0.54 0.00 41.85 2.57
616 915 3.376218 GCGGTCAGCTCTGAATGAT 57.624 52.632 0.54 0.00 41.85 2.45
628 927 0.613572 TACATCCAGGTCAGCGGTCA 60.614 55.000 0.00 0.00 0.00 4.02
630 929 0.249398 GTTACATCCAGGTCAGCGGT 59.751 55.000 0.00 0.00 0.00 5.68
631 930 0.537188 AGTTACATCCAGGTCAGCGG 59.463 55.000 0.00 0.00 0.00 5.52
632 931 2.093973 AGAAGTTACATCCAGGTCAGCG 60.094 50.000 0.00 0.00 0.00 5.18
635 934 4.220821 GTGAGAGAAGTTACATCCAGGTCA 59.779 45.833 0.00 0.00 0.00 4.02
636 935 4.382147 GGTGAGAGAAGTTACATCCAGGTC 60.382 50.000 0.00 0.00 0.00 3.85
637 936 3.515901 GGTGAGAGAAGTTACATCCAGGT 59.484 47.826 0.00 0.00 0.00 4.00
639 938 5.413309 AAGGTGAGAGAAGTTACATCCAG 57.587 43.478 0.00 0.00 0.00 3.86
640 939 5.544176 AGAAAGGTGAGAGAAGTTACATCCA 59.456 40.000 0.00 0.00 0.00 3.41
643 942 5.703130 GCAAGAAAGGTGAGAGAAGTTACAT 59.297 40.000 0.00 0.00 0.00 2.29
644 943 5.057149 GCAAGAAAGGTGAGAGAAGTTACA 58.943 41.667 0.00 0.00 0.00 2.41
645 944 5.178438 CAGCAAGAAAGGTGAGAGAAGTTAC 59.822 44.000 0.00 0.00 39.26 2.50
647 946 4.133078 CAGCAAGAAAGGTGAGAGAAGTT 58.867 43.478 0.00 0.00 39.26 2.66
650 949 3.845781 ACAGCAAGAAAGGTGAGAGAA 57.154 42.857 0.00 0.00 40.11 2.87
651 950 3.389329 AGAACAGCAAGAAAGGTGAGAGA 59.611 43.478 0.00 0.00 40.11 3.10
652 951 3.497640 CAGAACAGCAAGAAAGGTGAGAG 59.502 47.826 0.00 0.00 40.11 3.20
684 1008 6.598850 ACAAAAAGCTGTGGATGTGAAAAATT 59.401 30.769 0.00 0.00 0.00 1.82
687 1011 5.083533 ACAAAAAGCTGTGGATGTGAAAA 57.916 34.783 0.00 0.00 0.00 2.29
688 1012 4.734398 ACAAAAAGCTGTGGATGTGAAA 57.266 36.364 0.00 0.00 0.00 2.69
689 1013 4.734398 AACAAAAAGCTGTGGATGTGAA 57.266 36.364 0.00 0.00 0.00 3.18
690 1014 5.843673 TTAACAAAAAGCTGTGGATGTGA 57.156 34.783 0.00 0.00 0.00 3.58
691 1015 6.364165 CAGATTAACAAAAAGCTGTGGATGTG 59.636 38.462 0.00 0.00 37.93 3.21
692 1016 6.449698 CAGATTAACAAAAAGCTGTGGATGT 58.550 36.000 0.00 0.00 37.93 3.06
694 1018 5.244626 AGCAGATTAACAAAAAGCTGTGGAT 59.755 36.000 4.08 0.00 43.22 3.41
697 1021 4.682860 CCAGCAGATTAACAAAAAGCTGTG 59.317 41.667 10.16 0.00 43.22 3.66
698 1022 4.342092 ACCAGCAGATTAACAAAAAGCTGT 59.658 37.500 10.16 0.00 43.22 4.40
699 1023 4.874970 ACCAGCAGATTAACAAAAAGCTG 58.125 39.130 0.00 0.00 43.94 4.24
700 1024 5.535753 AACCAGCAGATTAACAAAAAGCT 57.464 34.783 0.00 0.00 0.00 3.74
701 1025 5.558844 GCAAACCAGCAGATTAACAAAAAGC 60.559 40.000 0.00 0.00 0.00 3.51
705 1038 4.935352 AGCAAACCAGCAGATTAACAAA 57.065 36.364 0.00 0.00 36.85 2.83
819 1419 0.118346 TAGGAGGGGACAAGGAAGCA 59.882 55.000 0.00 0.00 0.00 3.91
836 1486 4.344474 GGGCGCCCTCGTCGATAG 62.344 72.222 38.76 0.00 42.10 2.08
917 1894 1.449778 GAACCTAGTCGCCAAGCCC 60.450 63.158 0.00 0.00 0.00 5.19
926 1903 5.596845 CAATCCAAGCTCTAGAACCTAGTC 58.403 45.833 0.00 0.00 0.00 2.59
930 1907 2.573462 TGCAATCCAAGCTCTAGAACCT 59.427 45.455 0.00 0.00 0.00 3.50
962 1967 7.930325 TGGAAAACTGCAAATCAATGAATGTAA 59.070 29.630 0.00 0.00 0.00 2.41
972 1977 2.957680 TCAGCTGGAAAACTGCAAATCA 59.042 40.909 15.13 0.00 45.49 2.57
998 2034 2.509336 CCGTGACGACCTCCATGC 60.509 66.667 6.54 0.00 0.00 4.06
1076 2112 0.859232 GTCTTTCTTGACGCGCTTGA 59.141 50.000 5.73 0.00 0.00 3.02
1101 2137 3.265221 TCTCAAGCTCCATGGACAGAAAT 59.735 43.478 11.44 0.00 0.00 2.17
1107 2143 3.077617 GCTCTCAAGCTCCATGGAC 57.922 57.895 11.44 8.29 45.55 4.02
1279 3512 0.741915 AATTTGCCGGTGTTGTCGTT 59.258 45.000 1.90 0.00 0.00 3.85
1326 3559 6.218746 GTGATTCTTGCCTTTCTTGAACAAT 58.781 36.000 0.00 0.00 0.00 2.71
1476 3709 0.447801 CTGTGTACAATGCCCGAAGC 59.552 55.000 0.00 0.00 44.14 3.86
1485 3718 3.579709 CTCTGTCGCTTCTGTGTACAAT 58.420 45.455 0.00 0.00 0.00 2.71
1524 3757 7.790782 ACTTAAGAGGTCTTCATCTCTCTTT 57.209 36.000 10.09 0.00 41.99 2.52
1530 3763 6.013812 AGAGCAAACTTAAGAGGTCTTCATCT 60.014 38.462 10.09 0.00 35.51 2.90
1545 3778 2.108952 ACCCTCAATGGAGAGCAAACTT 59.891 45.455 0.00 0.00 44.26 2.66
1684 3920 1.004200 GACCGACGGGGACAAATGT 60.004 57.895 20.00 0.00 39.97 2.71
1939 4178 7.308589 CCTCAATGAAAAACTATTCTGAACCGT 60.309 37.037 0.00 0.00 0.00 4.83
1952 4196 5.912955 CGGTTTACTGACCTCAATGAAAAAC 59.087 40.000 0.00 0.00 37.56 2.43
1962 4206 1.804748 CCTTTGCGGTTTACTGACCTC 59.195 52.381 0.00 0.00 37.56 3.85
2191 4556 2.884639 GCAAAAGAGTAGCCTTTGGTGA 59.115 45.455 0.00 0.00 36.57 4.02
2205 4570 4.538490 TCCTGGGGTATTAAGAGCAAAAGA 59.462 41.667 1.28 0.00 0.00 2.52
2254 4619 3.288092 AGGCGAAAAGGGGAAATATGAC 58.712 45.455 0.00 0.00 0.00 3.06
2256 4621 3.447229 ACAAGGCGAAAAGGGGAAATATG 59.553 43.478 0.00 0.00 0.00 1.78
2962 5413 8.487028 ACTCTTGTCGGGAAATATTCTCTTATT 58.513 33.333 0.00 0.00 0.00 1.40
3267 5722 8.676397 TCCATATCAGTCCATCTCTATCAATT 57.324 34.615 0.00 0.00 0.00 2.32
3351 5806 6.945435 TGAGCTGGTTGAAGTAATTTAATCCA 59.055 34.615 0.00 0.00 0.00 3.41
3432 5887 3.197265 CAGAACCATATCATGCACACGA 58.803 45.455 0.00 0.00 0.00 4.35
3467 5922 3.360249 ACTTTGCTTCATGTGACAAGC 57.640 42.857 9.35 9.35 44.55 4.01
3502 5957 1.991121 ATGCTATTCCCAGTGCCATG 58.009 50.000 0.00 0.00 0.00 3.66
3547 6005 5.165961 TCCACTTTATTCTGAAGGGACAG 57.834 43.478 0.00 0.00 39.02 3.51
3565 6023 2.098770 GCTTGGCTTGATGATCTTCCAC 59.901 50.000 6.17 0.00 0.00 4.02
3644 6102 5.804639 ACAGACTTGGCATCATACTAACAA 58.195 37.500 0.00 0.00 0.00 2.83
3654 6112 4.022935 TCAAACATTGACAGACTTGGCATC 60.023 41.667 0.00 0.00 43.32 3.91
3759 6217 5.552766 ACCAAGGTACCTTAGGTGGATTAAA 59.447 40.000 31.43 0.00 36.68 1.52
3796 6254 6.382608 TCTCAGTCGAGAGTTCACTAATTTG 58.617 40.000 2.02 0.00 43.55 2.32
3834 6292 4.262592 GCAAGATCCAACACCTCCAAAAAT 60.263 41.667 0.00 0.00 0.00 1.82
3857 6315 4.224715 TCATCTAGCGTACGATTCCTTG 57.775 45.455 21.65 9.09 0.00 3.61
3861 6319 4.143305 GGCAATTCATCTAGCGTACGATTC 60.143 45.833 21.65 0.54 0.00 2.52
3865 6323 2.743938 AGGCAATTCATCTAGCGTACG 58.256 47.619 11.84 11.84 0.00 3.67
3866 6324 3.495001 GGAAGGCAATTCATCTAGCGTAC 59.505 47.826 3.64 0.00 39.91 3.67
3869 6327 2.289002 GTGGAAGGCAATTCATCTAGCG 59.711 50.000 3.64 0.00 39.91 4.26
3990 6454 1.614824 AGAGACCAAGAGCCCCCTG 60.615 63.158 0.00 0.00 0.00 4.45
4017 6481 0.315886 TGCCAAGCTCTTGTGCAATG 59.684 50.000 17.29 1.81 40.81 2.82
4039 6503 2.759114 CTCCCTCAGCCTTGCCAA 59.241 61.111 0.00 0.00 0.00 4.52
4293 6760 3.054728 ACTCAGAGAGGTTCGAGAGATGA 60.055 47.826 3.79 0.00 36.75 2.92
4371 6838 2.199652 CCGGCAAAGGGACAGCAAA 61.200 57.895 0.00 0.00 0.00 3.68
4403 6870 1.407936 CCATTGTGTTTGGTGGGTGA 58.592 50.000 0.00 0.00 0.00 4.02
4471 6938 1.022735 GCTGCTGATCCACAATCCAG 58.977 55.000 0.00 0.00 33.01 3.86
4512 6979 3.080158 TTCCACCCTGGGCAAAGCA 62.080 57.895 14.08 0.00 38.32 3.91
4521 6988 2.364972 ACCAAACTTCTTCCACCCTG 57.635 50.000 0.00 0.00 0.00 4.45
4580 7047 0.609131 CAGGCCCAAGTCGAAACCAT 60.609 55.000 0.00 0.00 0.00 3.55
4618 7085 1.388547 ACAATAACATGCCGCCGAAT 58.611 45.000 0.00 0.00 0.00 3.34
4632 7099 6.785076 TCCACCAGGATACAGAAAAACAATA 58.215 36.000 0.00 0.00 39.61 1.90
4642 7109 0.387202 CTCGCTCCACCAGGATACAG 59.613 60.000 0.00 0.00 44.70 2.74
4648 7115 3.322466 AACCCTCGCTCCACCAGG 61.322 66.667 0.00 0.00 0.00 4.45
4649 7116 2.046892 CAACCCTCGCTCCACCAG 60.047 66.667 0.00 0.00 0.00 4.00
4683 7150 2.281970 TGCCTCACTGCAGCCTTG 60.282 61.111 15.27 4.87 36.04 3.61
4684 7151 2.282040 GTGCCTCACTGCAGCCTT 60.282 61.111 15.27 0.00 43.02 4.35
4707 7174 2.478335 GATGGTTGGGACGGGCTTCA 62.478 60.000 0.00 0.00 0.00 3.02
4737 7204 7.090319 TGCTATAAGTGGGACCATATCAATT 57.910 36.000 0.00 0.00 0.00 2.32
4754 7221 5.048921 GCGACATGAGTACCTACTGCTATAA 60.049 44.000 0.00 0.00 36.50 0.98
4763 7230 1.842052 TGGTGCGACATGAGTACCTA 58.158 50.000 23.93 13.61 43.44 3.08
4789 7264 9.872757 AAAACACATACGTAAATTCACAAGTAG 57.127 29.630 0.00 0.00 0.00 2.57
4847 7371 8.948362 TGGGAGATTTAGAGATCAAAATCCATA 58.052 33.333 17.62 6.40 33.40 2.74
4880 7404 5.243207 TCCTCACACATATCATCATCATGC 58.757 41.667 0.00 0.00 0.00 4.06
4889 7413 6.550938 AATCAGTTCTCCTCACACATATCA 57.449 37.500 0.00 0.00 0.00 2.15
4893 7417 6.820656 GTCATAAATCAGTTCTCCTCACACAT 59.179 38.462 0.00 0.00 0.00 3.21
4914 7464 2.495270 ACTGTGAATCTCTCTGCGTCAT 59.505 45.455 0.00 0.00 0.00 3.06
4925 7475 2.039480 ACACCTGATGCACTGTGAATCT 59.961 45.455 25.20 6.73 0.00 2.40
4934 7486 0.520404 CAAGAGCACACCTGATGCAC 59.480 55.000 0.00 0.00 45.92 4.57
4968 7534 5.241403 AGGTAGTGGAAAACATGATCACA 57.759 39.130 0.00 0.00 0.00 3.58
4969 7535 6.431234 AGAAAGGTAGTGGAAAACATGATCAC 59.569 38.462 0.00 0.34 0.00 3.06
4971 7537 7.454260 AAGAAAGGTAGTGGAAAACATGATC 57.546 36.000 0.00 0.00 0.00 2.92
5021 7839 7.595130 CCAACTTTACTTTTCTCAAATGTAGCC 59.405 37.037 0.00 0.00 34.03 3.93
5051 8230 8.016301 TGAGATTGAGCAATTATCAGACTACT 57.984 34.615 0.00 0.00 0.00 2.57
5061 8240 6.699366 TGCCAAAAATGAGATTGAGCAATTA 58.301 32.000 0.00 0.00 33.15 1.40
5063 8242 5.155278 TGCCAAAAATGAGATTGAGCAAT 57.845 34.783 0.00 0.00 33.15 3.56
5107 8286 9.941664 CTACAAGATTGCATAAACATCCTAAAG 57.058 33.333 0.00 0.00 0.00 1.85
5126 8322 5.594725 CACTACCAGCTATCCTTCTACAAGA 59.405 44.000 0.00 0.00 0.00 3.02
5127 8323 5.221342 CCACTACCAGCTATCCTTCTACAAG 60.221 48.000 0.00 0.00 0.00 3.16
5128 8324 4.649674 CCACTACCAGCTATCCTTCTACAA 59.350 45.833 0.00 0.00 0.00 2.41
5129 8325 4.215908 CCACTACCAGCTATCCTTCTACA 58.784 47.826 0.00 0.00 0.00 2.74
5130 8326 3.574826 CCCACTACCAGCTATCCTTCTAC 59.425 52.174 0.00 0.00 0.00 2.59
5131 8327 3.438078 CCCCACTACCAGCTATCCTTCTA 60.438 52.174 0.00 0.00 0.00 2.10
5132 8328 2.683768 CCCACTACCAGCTATCCTTCT 58.316 52.381 0.00 0.00 0.00 2.85
5133 8329 1.694696 CCCCACTACCAGCTATCCTTC 59.305 57.143 0.00 0.00 0.00 3.46
5134 8330 1.695989 CCCCCACTACCAGCTATCCTT 60.696 57.143 0.00 0.00 0.00 3.36
5142 8338 1.343478 ACATCTCTCCCCCACTACCAG 60.343 57.143 0.00 0.00 0.00 4.00
5150 8346 3.181439 CCCAAAATCTACATCTCTCCCCC 60.181 52.174 0.00 0.00 0.00 5.40
5156 8367 7.340487 ACCAAATCTTCCCAAAATCTACATCTC 59.660 37.037 0.00 0.00 0.00 2.75
5160 8371 6.310941 TCACCAAATCTTCCCAAAATCTACA 58.689 36.000 0.00 0.00 0.00 2.74
5181 8392 6.016777 CAGCTAAAATCAACATCCCCTATCAC 60.017 42.308 0.00 0.00 0.00 3.06
5182 8393 6.064060 CAGCTAAAATCAACATCCCCTATCA 58.936 40.000 0.00 0.00 0.00 2.15
5207 8422 4.955811 ACATGGAGTACTTGTCACTTGA 57.044 40.909 0.00 0.00 32.52 3.02
5288 8724 7.462590 AGGCACCTTCTAAATTTTAGAGAGTT 58.537 34.615 16.27 6.02 0.00 3.01
5309 8746 3.788227 AAACCTTCACATCAGTAGGCA 57.212 42.857 0.00 0.00 28.20 4.75
5354 8951 6.395780 TGAACAGAAAATACCCCTATCCAA 57.604 37.500 0.00 0.00 0.00 3.53
5386 9029 3.795623 TGTGAACTTCGGGAGCTATAC 57.204 47.619 0.00 0.00 0.00 1.47
5395 9038 4.203950 TCGTTTCATTTGTGAACTTCGG 57.796 40.909 0.00 0.00 0.00 4.30
5401 9044 3.567585 TGCAGGATCGTTTCATTTGTGAA 59.432 39.130 0.00 0.00 0.00 3.18
5417 9061 7.531857 TTACATACCAAAATTTTCTGCAGGA 57.468 32.000 15.13 0.46 0.00 3.86
5529 9241 4.929819 AACAATTTTCCTGTACCACACC 57.070 40.909 0.00 0.00 0.00 4.16
5558 9276 3.173965 TCCCCTGACTCTTTTCTACTGG 58.826 50.000 0.00 0.00 0.00 4.00
5634 9355 5.312120 ACAGGAAGTCAGTAACTGTATCG 57.688 43.478 0.00 0.00 40.31 2.92
5644 9365 2.906389 TCCATGCTAACAGGAAGTCAGT 59.094 45.455 0.00 0.00 0.00 3.41
5770 9559 9.030452 TCCAATATTTAACTTTGCAACCTACAT 57.970 29.630 0.00 0.00 0.00 2.29
5850 9641 2.434331 GCCACCAGCAGTAACCCA 59.566 61.111 0.00 0.00 42.97 4.51
5876 9667 1.140452 TCTCAGATGCCATCCTTCAGC 59.860 52.381 0.00 0.00 0.00 4.26
5877 9668 3.555527 TTCTCAGATGCCATCCTTCAG 57.444 47.619 0.00 0.00 0.00 3.02
5888 9679 5.354513 AGCTCATCACACAATTTCTCAGATG 59.645 40.000 0.00 0.00 34.30 2.90
5889 9680 5.498393 AGCTCATCACACAATTTCTCAGAT 58.502 37.500 0.00 0.00 0.00 2.90
5890 9681 4.903054 AGCTCATCACACAATTTCTCAGA 58.097 39.130 0.00 0.00 0.00 3.27
5891 9682 5.411977 AGAAGCTCATCACACAATTTCTCAG 59.588 40.000 0.00 0.00 0.00 3.35
5892 9683 5.311265 AGAAGCTCATCACACAATTTCTCA 58.689 37.500 0.00 0.00 0.00 3.27
5893 9684 5.876612 AGAAGCTCATCACACAATTTCTC 57.123 39.130 0.00 0.00 0.00 2.87
5894 9685 6.645790 AAAGAAGCTCATCACACAATTTCT 57.354 33.333 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.