Multiple sequence alignment - TraesCS1A01G028000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G028000 chr1A 100.000 3585 0 0 1 3585 13271099 13274683 0.000000e+00 6621.0
1 TraesCS1A01G028000 chr1A 89.208 2891 207 62 747 3580 22762258 22759416 0.000000e+00 3513.0
2 TraesCS1A01G028000 chr1A 86.851 2175 192 45 1412 3534 13212988 13215120 0.000000e+00 2346.0
3 TraesCS1A01G028000 chr1A 86.980 1636 132 37 1412 2999 13009308 13007706 0.000000e+00 1766.0
4 TraesCS1A01G028000 chr1A 83.488 1938 206 55 845 2756 22818803 22816954 0.000000e+00 1701.0
5 TraesCS1A01G028000 chr1A 88.656 1384 116 21 1412 2783 13229599 13230953 0.000000e+00 1648.0
6 TraesCS1A01G028000 chr1A 87.639 1173 77 24 1897 3036 13005011 13003874 0.000000e+00 1301.0
7 TraesCS1A01G028000 chr1A 85.577 728 76 20 2770 3485 13230972 13231682 0.000000e+00 736.0
8 TraesCS1A01G028000 chr1A 82.953 657 71 24 2770 3416 22778850 22778225 4.040000e-154 555.0
9 TraesCS1A01G028000 chr1A 99.222 257 2 0 1001 1257 13009850 13009594 7.010000e-127 464.0
10 TraesCS1A01G028000 chr1A 86.364 286 37 2 981 1265 13250410 13250694 9.670000e-81 311.0
11 TraesCS1A01G028000 chr1A 90.751 173 15 1 499 671 22763387 22763216 2.780000e-56 230.0
12 TraesCS1A01G028000 chr1D 91.147 2067 125 31 747 2798 10929702 10931725 0.000000e+00 2750.0
13 TraesCS1A01G028000 chr1D 86.423 2158 195 51 1458 3562 10775143 10773031 0.000000e+00 2272.0
14 TraesCS1A01G028000 chr1D 89.073 1327 100 23 1444 2756 10763696 10762401 0.000000e+00 1605.0
15 TraesCS1A01G028000 chr1D 84.765 1385 163 27 1395 2756 10836379 10837738 0.000000e+00 1345.0
16 TraesCS1A01G028000 chr1D 91.453 819 61 4 2770 3580 10931729 10932546 0.000000e+00 1116.0
17 TraesCS1A01G028000 chr1D 86.220 820 88 17 2770 3580 10762270 10761467 0.000000e+00 865.0
18 TraesCS1A01G028000 chr1D 84.634 820 79 22 2770 3580 10845885 10846666 0.000000e+00 773.0
19 TraesCS1A01G028000 chr1D 84.104 346 52 3 981 1324 10776959 10776615 7.420000e-87 331.0
20 TraesCS1A01G028000 chr1D 83.621 348 54 3 981 1326 10835830 10836176 1.240000e-84 324.0
21 TraesCS1A01G028000 chr1D 89.205 176 17 2 499 673 10921382 10921556 6.030000e-53 219.0
22 TraesCS1A01G028000 chr1B 87.807 2116 180 42 1459 3526 39814791 39816876 0.000000e+00 2407.0
23 TraesCS1A01G028000 chr1B 88.362 2045 145 35 1586 3580 16400916 16402917 0.000000e+00 2372.0
24 TraesCS1A01G028000 chr1B 85.637 2207 235 63 1412 3577 16225064 16222899 0.000000e+00 2244.0
25 TraesCS1A01G028000 chr1B 85.361 2104 200 57 1412 3455 23598035 23600090 0.000000e+00 2080.0
26 TraesCS1A01G028000 chr1B 85.271 2064 210 58 1430 3455 39732828 39734835 0.000000e+00 2041.0
27 TraesCS1A01G028000 chr1B 87.428 1392 129 26 1395 2771 23775532 23776892 0.000000e+00 1559.0
28 TraesCS1A01G028000 chr1B 87.371 388 35 8 882 1267 39814095 39814470 1.980000e-117 433.0
29 TraesCS1A01G028000 chr1B 85.829 374 39 7 3189 3555 39808730 39809096 5.610000e-103 385.0
30 TraesCS1A01G028000 chr1B 82.948 346 56 3 983 1326 23774946 23775290 3.480000e-80 309.0
31 TraesCS1A01G028000 chr1B 76.425 649 104 24 2860 3498 23776929 23777538 4.500000e-79 305.0
32 TraesCS1A01G028000 chr1B 92.800 125 8 1 3457 3580 39816848 39816972 2.840000e-41 180.0
33 TraesCS1A01G028000 chr1B 85.586 111 14 2 393 502 513429396 513429287 8.130000e-22 115.0
34 TraesCS1A01G028000 chr4D 89.516 496 51 1 1 496 426701625 426701131 8.450000e-176 627.0
35 TraesCS1A01G028000 chr4D 90.323 279 19 1 1 271 29404688 29404410 3.400000e-95 359.0
36 TraesCS1A01G028000 chr6A 89.530 468 47 2 28 495 86362034 86362499 3.080000e-165 592.0
37 TraesCS1A01G028000 chr6A 94.444 36 2 0 793 828 611823192 611823227 5.000000e-04 56.5
38 TraesCS1A01G028000 chr2A 89.565 460 42 3 44 499 758665831 758666288 2.400000e-161 579.0
39 TraesCS1A01G028000 chr2A 84.404 109 17 0 394 502 475141536 475141644 1.360000e-19 108.0
40 TraesCS1A01G028000 chr2D 88.451 355 33 4 157 506 643175405 643175054 4.280000e-114 422.0
41 TraesCS1A01G028000 chrUn 99.541 218 1 0 3368 3585 261630583 261630366 7.210000e-107 398.0
42 TraesCS1A01G028000 chrUn 100.000 52 0 0 3325 3376 261632262 261632211 2.950000e-16 97.1
43 TraesCS1A01G028000 chrUn 100.000 52 0 0 3325 3376 315850479 315850530 2.950000e-16 97.1
44 TraesCS1A01G028000 chr2B 84.293 191 26 2 499 689 244782266 244782080 2.200000e-42 183.0
45 TraesCS1A01G028000 chr2B 100.000 28 0 0 801 828 58343961 58343988 6.000000e-03 52.8
46 TraesCS1A01G028000 chr7B 85.185 108 14 2 393 499 681751640 681751534 3.780000e-20 110.0
47 TraesCS1A01G028000 chr7A 84.112 107 17 0 393 499 540281587 540281693 1.760000e-18 104.0
48 TraesCS1A01G028000 chr7A 83.636 110 17 1 394 503 62730554 62730662 6.330000e-18 102.0
49 TraesCS1A01G028000 chr6B 90.476 42 4 0 792 833 42435069 42435110 5.000000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G028000 chr1A 13271099 13274683 3584 False 6621.000000 6621 100.000000 1 3585 1 chr1A.!!$F3 3584
1 TraesCS1A01G028000 chr1A 13212988 13215120 2132 False 2346.000000 2346 86.851000 1412 3534 1 chr1A.!!$F1 2122
2 TraesCS1A01G028000 chr1A 22759416 22763387 3971 True 1871.500000 3513 89.979500 499 3580 2 chr1A.!!$R4 3081
3 TraesCS1A01G028000 chr1A 22816954 22818803 1849 True 1701.000000 1701 83.488000 845 2756 1 chr1A.!!$R2 1911
4 TraesCS1A01G028000 chr1A 13229599 13231682 2083 False 1192.000000 1648 87.116500 1412 3485 2 chr1A.!!$F4 2073
5 TraesCS1A01G028000 chr1A 13003874 13009850 5976 True 1177.000000 1766 91.280333 1001 3036 3 chr1A.!!$R3 2035
6 TraesCS1A01G028000 chr1A 22778225 22778850 625 True 555.000000 555 82.953000 2770 3416 1 chr1A.!!$R1 646
7 TraesCS1A01G028000 chr1D 10929702 10932546 2844 False 1933.000000 2750 91.300000 747 3580 2 chr1D.!!$F4 2833
8 TraesCS1A01G028000 chr1D 10773031 10776959 3928 True 1301.500000 2272 85.263500 981 3562 2 chr1D.!!$R2 2581
9 TraesCS1A01G028000 chr1D 10761467 10763696 2229 True 1235.000000 1605 87.646500 1444 3580 2 chr1D.!!$R1 2136
10 TraesCS1A01G028000 chr1D 10835830 10837738 1908 False 834.500000 1345 84.193000 981 2756 2 chr1D.!!$F3 1775
11 TraesCS1A01G028000 chr1D 10845885 10846666 781 False 773.000000 773 84.634000 2770 3580 1 chr1D.!!$F1 810
12 TraesCS1A01G028000 chr1B 16400916 16402917 2001 False 2372.000000 2372 88.362000 1586 3580 1 chr1B.!!$F1 1994
13 TraesCS1A01G028000 chr1B 16222899 16225064 2165 True 2244.000000 2244 85.637000 1412 3577 1 chr1B.!!$R1 2165
14 TraesCS1A01G028000 chr1B 23598035 23600090 2055 False 2080.000000 2080 85.361000 1412 3455 1 chr1B.!!$F2 2043
15 TraesCS1A01G028000 chr1B 39732828 39734835 2007 False 2041.000000 2041 85.271000 1430 3455 1 chr1B.!!$F3 2025
16 TraesCS1A01G028000 chr1B 39814095 39816972 2877 False 1006.666667 2407 89.326000 882 3580 3 chr1B.!!$F6 2698
17 TraesCS1A01G028000 chr1B 23774946 23777538 2592 False 724.333333 1559 82.267000 983 3498 3 chr1B.!!$F5 2515
18 TraesCS1A01G028000 chrUn 261630366 261632262 1896 True 247.550000 398 99.770500 3325 3585 2 chrUn.!!$R1 260

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
108 109 0.032130 GTCTTGCCGGCGATCATCTA 59.968 55.0 23.90 0.0 0.00 1.98 F
309 310 0.032952 GTTCGTGGTGTGGCAGTCTA 59.967 55.0 0.00 0.0 0.00 2.59 F
330 331 0.175760 CCCGGATGACGTCTCATGTT 59.824 55.0 17.92 0.0 42.24 2.71 F
436 437 0.176910 ACCAAGGTTTGCCGGTTTTG 59.823 50.0 1.90 0.0 40.50 2.44 F
437 438 0.461961 CCAAGGTTTGCCGGTTTTGA 59.538 50.0 1.90 0.0 40.50 2.69 F
2329 4862 0.480252 AAACCCTTGAGAGCTGGCTT 59.520 50.0 0.00 0.0 0.00 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1338 2350 1.191535 TGCAGACGGTTATACAGGCT 58.808 50.000 0.00 0.00 29.44 4.58 R
1339 2351 1.867233 CATGCAGACGGTTATACAGGC 59.133 52.381 0.00 0.00 0.00 4.85 R
1664 4159 2.125753 GAGGGACAGACGCTGCAG 60.126 66.667 10.11 10.11 41.84 4.41 R
2370 4903 1.811965 TGATTTCAATGGTGCACTCGG 59.188 47.619 17.98 4.45 0.00 4.63 R
2448 4981 2.362077 GTTTGTTCCATGTCCAGCTTGT 59.638 45.455 0.00 0.00 0.00 3.16 R
3323 6032 0.464373 CTGGCGGCATGGTGTCTTAT 60.464 55.000 13.85 0.00 0.00 1.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 6.558771 TTTATGGGCATAACTCATGATTCG 57.441 37.500 0.00 0.00 36.69 3.34
27 28 2.221169 TGGGCATAACTCATGATTCGC 58.779 47.619 0.00 0.00 36.69 4.70
28 29 1.195448 GGGCATAACTCATGATTCGCG 59.805 52.381 0.00 0.00 36.69 5.87
29 30 1.867233 GGCATAACTCATGATTCGCGT 59.133 47.619 5.77 0.00 36.69 6.01
30 31 2.348872 GGCATAACTCATGATTCGCGTG 60.349 50.000 5.77 0.00 36.69 5.34
31 32 2.896289 CATAACTCATGATTCGCGTGC 58.104 47.619 5.77 0.00 36.69 5.34
32 33 0.920664 TAACTCATGATTCGCGTGCG 59.079 50.000 5.77 8.14 41.35 5.34
33 34 2.053638 CTCATGATTCGCGTGCGC 60.054 61.111 9.79 0.00 39.59 6.09
34 35 3.497407 CTCATGATTCGCGTGCGCC 62.497 63.158 9.79 1.98 39.59 6.53
35 36 3.566853 CATGATTCGCGTGCGCCT 61.567 61.111 9.79 0.00 39.59 5.52
36 37 3.566853 ATGATTCGCGTGCGCCTG 61.567 61.111 9.79 0.00 39.59 4.85
38 39 3.788766 GATTCGCGTGCGCCTGTT 61.789 61.111 9.79 0.00 39.59 3.16
39 40 2.433491 ATTCGCGTGCGCCTGTTA 60.433 55.556 9.79 0.00 39.59 2.41
40 41 2.612335 GATTCGCGTGCGCCTGTTAC 62.612 60.000 9.79 0.00 39.59 2.50
41 42 3.851845 TTCGCGTGCGCCTGTTACT 62.852 57.895 9.79 0.00 39.59 2.24
42 43 3.838795 CGCGTGCGCCTGTTACTC 61.839 66.667 4.18 0.00 37.98 2.59
43 44 3.838795 GCGTGCGCCTGTTACTCG 61.839 66.667 4.18 0.00 34.56 4.18
48 49 4.185413 CGCCTGTTACTCGCATGT 57.815 55.556 0.00 0.00 0.00 3.21
49 50 2.456000 CGCCTGTTACTCGCATGTT 58.544 52.632 0.00 0.00 0.00 2.71
50 51 0.370273 CGCCTGTTACTCGCATGTTC 59.630 55.000 0.00 0.00 0.00 3.18
51 52 1.726853 GCCTGTTACTCGCATGTTCT 58.273 50.000 0.00 0.00 0.00 3.01
52 53 1.661112 GCCTGTTACTCGCATGTTCTC 59.339 52.381 0.00 0.00 0.00 2.87
53 54 1.920574 CCTGTTACTCGCATGTTCTCG 59.079 52.381 0.00 0.00 0.00 4.04
54 55 1.321743 CTGTTACTCGCATGTTCTCGC 59.678 52.381 0.00 0.00 0.00 5.03
55 56 0.645868 GTTACTCGCATGTTCTCGCC 59.354 55.000 0.00 0.00 0.00 5.54
56 57 0.800683 TTACTCGCATGTTCTCGCCG 60.801 55.000 0.00 0.00 0.00 6.46
57 58 2.607668 TACTCGCATGTTCTCGCCGG 62.608 60.000 0.00 0.00 0.00 6.13
58 59 4.812476 TCGCATGTTCTCGCCGGG 62.812 66.667 2.18 0.00 0.00 5.73
59 60 4.812476 CGCATGTTCTCGCCGGGA 62.812 66.667 2.18 0.00 0.00 5.14
60 61 2.435938 GCATGTTCTCGCCGGGAA 60.436 61.111 2.18 0.00 0.00 3.97
61 62 2.464459 GCATGTTCTCGCCGGGAAG 61.464 63.158 0.00 0.00 0.00 3.46
62 63 1.815421 CATGTTCTCGCCGGGAAGG 60.815 63.158 0.00 0.00 44.97 3.46
63 64 3.031417 ATGTTCTCGCCGGGAAGGG 62.031 63.158 0.00 0.00 41.48 3.95
70 71 3.961414 GCCGGGAAGGGGTCAACA 61.961 66.667 2.18 0.00 41.48 3.33
71 72 3.087065 CCGGGAAGGGGTCAACAT 58.913 61.111 0.00 0.00 35.97 2.71
72 73 1.077716 CCGGGAAGGGGTCAACATC 60.078 63.158 0.00 0.00 35.97 3.06
73 74 1.682849 CGGGAAGGGGTCAACATCA 59.317 57.895 0.00 0.00 0.00 3.07
74 75 0.255890 CGGGAAGGGGTCAACATCAT 59.744 55.000 0.00 0.00 0.00 2.45
75 76 1.767759 GGGAAGGGGTCAACATCATG 58.232 55.000 0.00 0.00 0.00 3.07
76 77 1.005924 GGGAAGGGGTCAACATCATGT 59.994 52.381 0.00 0.00 0.00 3.21
77 78 2.241176 GGGAAGGGGTCAACATCATGTA 59.759 50.000 0.00 0.00 0.00 2.29
78 79 3.279434 GGAAGGGGTCAACATCATGTAC 58.721 50.000 0.00 0.00 0.00 2.90
79 80 2.691409 AGGGGTCAACATCATGTACG 57.309 50.000 0.00 0.00 0.00 3.67
80 81 1.906574 AGGGGTCAACATCATGTACGT 59.093 47.619 0.00 0.00 0.00 3.57
81 82 3.101437 AGGGGTCAACATCATGTACGTA 58.899 45.455 0.00 0.00 0.00 3.57
82 83 3.118884 AGGGGTCAACATCATGTACGTAC 60.119 47.826 18.90 18.90 0.00 3.67
83 84 2.855963 GGGTCAACATCATGTACGTACG 59.144 50.000 20.18 15.01 0.00 3.67
84 85 3.504863 GGTCAACATCATGTACGTACGT 58.495 45.455 25.98 25.98 0.00 3.57
85 86 3.302434 GGTCAACATCATGTACGTACGTG 59.698 47.826 32.75 32.75 42.96 4.49
86 87 2.918600 TCAACATCATGTACGTACGTGC 59.081 45.455 33.41 28.42 41.72 5.34
87 88 1.541475 ACATCATGTACGTACGTGCG 58.459 50.000 33.41 28.32 41.72 5.34
89 90 1.251762 CATCATGTACGTACGTGCGTG 59.748 52.381 37.38 37.38 45.33 5.34
90 91 0.238025 TCATGTACGTACGTGCGTGT 59.762 50.000 39.14 23.67 44.35 4.49
91 92 0.631745 CATGTACGTACGTGCGTGTC 59.368 55.000 35.78 27.91 45.33 3.67
92 93 0.518636 ATGTACGTACGTGCGTGTCT 59.481 50.000 36.35 19.75 45.33 3.41
93 94 0.307453 TGTACGTACGTGCGTGTCTT 59.693 50.000 36.35 15.78 45.33 3.01
94 95 0.699151 GTACGTACGTGCGTGTCTTG 59.301 55.000 36.35 6.43 45.33 3.02
95 96 0.998226 TACGTACGTGCGTGTCTTGC 60.998 55.000 36.35 0.00 45.33 4.01
96 97 2.851104 GTACGTGCGTGTCTTGCC 59.149 61.111 7.55 0.00 0.00 4.52
97 98 2.731721 TACGTGCGTGTCTTGCCG 60.732 61.111 7.55 0.00 33.96 5.69
103 104 3.554692 CGTGTCTTGCCGGCGATC 61.555 66.667 23.90 16.19 0.00 3.69
104 105 2.434185 GTGTCTTGCCGGCGATCA 60.434 61.111 23.90 18.62 0.00 2.92
105 106 1.815421 GTGTCTTGCCGGCGATCAT 60.815 57.895 23.90 0.00 0.00 2.45
106 107 1.521457 TGTCTTGCCGGCGATCATC 60.521 57.895 23.90 10.39 0.00 2.92
107 108 1.227380 GTCTTGCCGGCGATCATCT 60.227 57.895 23.90 0.00 0.00 2.90
108 109 0.032130 GTCTTGCCGGCGATCATCTA 59.968 55.000 23.90 0.00 0.00 1.98
109 110 0.315251 TCTTGCCGGCGATCATCTAG 59.685 55.000 23.90 6.20 0.00 2.43
110 111 1.287730 CTTGCCGGCGATCATCTAGC 61.288 60.000 23.90 0.00 0.00 3.42
111 112 1.748329 TTGCCGGCGATCATCTAGCT 61.748 55.000 23.90 0.00 0.00 3.32
112 113 1.445238 GCCGGCGATCATCTAGCTC 60.445 63.158 12.58 0.00 0.00 4.09
113 114 1.154131 CCGGCGATCATCTAGCTCG 60.154 63.158 9.30 0.00 38.81 5.03
114 115 1.578206 CCGGCGATCATCTAGCTCGA 61.578 60.000 9.30 0.00 38.07 4.04
115 116 0.449786 CGGCGATCATCTAGCTCGAT 59.550 55.000 0.00 0.00 38.07 3.59
116 117 1.135546 CGGCGATCATCTAGCTCGATT 60.136 52.381 0.00 0.00 38.07 3.34
117 118 2.669670 CGGCGATCATCTAGCTCGATTT 60.670 50.000 0.00 0.00 38.07 2.17
118 119 3.321497 GGCGATCATCTAGCTCGATTTT 58.679 45.455 0.00 0.00 38.07 1.82
119 120 3.366422 GGCGATCATCTAGCTCGATTTTC 59.634 47.826 0.00 0.00 38.07 2.29
120 121 3.983988 GCGATCATCTAGCTCGATTTTCA 59.016 43.478 0.00 0.00 38.07 2.69
121 122 4.143431 GCGATCATCTAGCTCGATTTTCAC 60.143 45.833 0.00 0.00 38.07 3.18
122 123 4.087789 CGATCATCTAGCTCGATTTTCACG 59.912 45.833 0.00 0.00 38.07 4.35
123 124 4.371855 TCATCTAGCTCGATTTTCACGT 57.628 40.909 0.00 0.00 0.00 4.49
124 125 4.105486 TCATCTAGCTCGATTTTCACGTG 58.895 43.478 9.94 9.94 0.00 4.49
125 126 3.842732 TCTAGCTCGATTTTCACGTGA 57.157 42.857 15.76 15.76 0.00 4.35
126 127 3.759418 TCTAGCTCGATTTTCACGTGAG 58.241 45.455 19.11 6.89 0.00 3.51
127 128 3.569957 GCTCGATTTTCACGTGAGC 57.430 52.632 19.11 12.89 44.37 4.26
130 131 3.295553 CTCGATTTTCACGTGAGCATC 57.704 47.619 19.11 20.35 0.00 3.91
131 132 1.999735 TCGATTTTCACGTGAGCATCC 59.000 47.619 23.33 12.49 0.00 3.51
132 133 1.731709 CGATTTTCACGTGAGCATCCA 59.268 47.619 23.33 7.24 0.00 3.41
133 134 2.159430 CGATTTTCACGTGAGCATCCAA 59.841 45.455 23.33 12.07 0.00 3.53
134 135 3.364864 CGATTTTCACGTGAGCATCCAAA 60.365 43.478 23.33 18.31 0.00 3.28
135 136 3.624326 TTTTCACGTGAGCATCCAAAG 57.376 42.857 19.11 0.00 0.00 2.77
136 137 0.874390 TTCACGTGAGCATCCAAAGC 59.126 50.000 19.11 0.00 0.00 3.51
137 138 0.955428 TCACGTGAGCATCCAAAGCC 60.955 55.000 15.76 0.00 0.00 4.35
138 139 1.073025 ACGTGAGCATCCAAAGCCA 59.927 52.632 0.00 0.00 0.00 4.75
139 140 0.537143 ACGTGAGCATCCAAAGCCAA 60.537 50.000 0.00 0.00 0.00 4.52
140 141 0.813184 CGTGAGCATCCAAAGCCAAT 59.187 50.000 0.00 0.00 0.00 3.16
141 142 1.203052 CGTGAGCATCCAAAGCCAATT 59.797 47.619 0.00 0.00 0.00 2.32
142 143 2.353011 CGTGAGCATCCAAAGCCAATTT 60.353 45.455 0.00 0.00 0.00 1.82
143 144 3.667360 GTGAGCATCCAAAGCCAATTTT 58.333 40.909 0.00 0.00 0.00 1.82
144 145 3.434299 GTGAGCATCCAAAGCCAATTTTG 59.566 43.478 0.00 0.00 37.70 2.44
145 146 2.417586 GAGCATCCAAAGCCAATTTTGC 59.582 45.455 0.00 0.00 36.86 3.68
146 147 2.039348 AGCATCCAAAGCCAATTTTGCT 59.961 40.909 0.00 0.00 37.56 3.91
147 148 2.160813 GCATCCAAAGCCAATTTTGCTG 59.839 45.455 0.17 0.00 39.48 4.41
148 149 2.547299 TCCAAAGCCAATTTTGCTGG 57.453 45.000 0.17 0.47 39.48 4.85
149 150 1.767681 TCCAAAGCCAATTTTGCTGGT 59.232 42.857 0.17 0.00 39.48 4.00
150 151 2.968574 TCCAAAGCCAATTTTGCTGGTA 59.031 40.909 0.17 0.00 39.48 3.25
151 152 3.066380 CCAAAGCCAATTTTGCTGGTAC 58.934 45.455 0.17 0.00 39.48 3.34
152 153 2.723124 AAGCCAATTTTGCTGGTACG 57.277 45.000 0.17 0.00 39.48 3.67
153 154 1.616159 AGCCAATTTTGCTGGTACGT 58.384 45.000 0.00 0.00 37.76 3.57
154 155 2.785562 AGCCAATTTTGCTGGTACGTA 58.214 42.857 0.00 0.00 37.76 3.57
155 156 3.150767 AGCCAATTTTGCTGGTACGTAA 58.849 40.909 0.00 0.00 37.76 3.18
156 157 3.570550 AGCCAATTTTGCTGGTACGTAAA 59.429 39.130 0.00 0.00 37.76 2.01
157 158 3.917985 GCCAATTTTGCTGGTACGTAAAG 59.082 43.478 0.00 0.00 36.24 1.85
158 159 3.917985 CCAATTTTGCTGGTACGTAAAGC 59.082 43.478 19.65 19.65 37.46 3.51
159 160 4.320935 CCAATTTTGCTGGTACGTAAAGCT 60.321 41.667 24.20 8.44 37.82 3.74
160 161 4.680171 ATTTTGCTGGTACGTAAAGCTC 57.320 40.909 24.20 2.91 37.82 4.09
161 162 1.705256 TTGCTGGTACGTAAAGCTCG 58.295 50.000 24.20 0.00 37.82 5.03
162 163 0.883153 TGCTGGTACGTAAAGCTCGA 59.117 50.000 24.20 8.72 37.82 4.04
163 164 1.266466 GCTGGTACGTAAAGCTCGAC 58.734 55.000 19.33 0.00 34.05 4.20
164 165 1.905449 CTGGTACGTAAAGCTCGACC 58.095 55.000 0.00 0.00 33.05 4.79
165 166 0.168788 TGGTACGTAAAGCTCGACCG 59.831 55.000 0.00 0.00 34.15 4.79
166 167 1.136285 GGTACGTAAAGCTCGACCGC 61.136 60.000 0.00 0.00 0.00 5.68
167 168 1.136285 GTACGTAAAGCTCGACCGCC 61.136 60.000 0.00 0.00 0.00 6.13
168 169 2.270297 TACGTAAAGCTCGACCGCCC 62.270 60.000 0.00 0.00 0.00 6.13
169 170 2.577593 GTAAAGCTCGACCGCCCT 59.422 61.111 0.00 0.00 0.00 5.19
170 171 1.810030 GTAAAGCTCGACCGCCCTG 60.810 63.158 0.00 0.00 0.00 4.45
171 172 3.014085 TAAAGCTCGACCGCCCTGG 62.014 63.158 0.00 0.00 46.41 4.45
209 210 4.100084 CTGGCCGCATGACCTGGA 62.100 66.667 0.00 0.00 0.00 3.86
210 211 4.408821 TGGCCGCATGACCTGGAC 62.409 66.667 0.00 0.00 0.00 4.02
214 215 4.758251 CGCATGACCTGGACGGCA 62.758 66.667 0.00 0.00 35.61 5.69
215 216 2.359850 GCATGACCTGGACGGCAA 60.360 61.111 0.00 0.00 35.61 4.52
216 217 2.401766 GCATGACCTGGACGGCAAG 61.402 63.158 0.00 0.00 35.61 4.01
217 218 2.045926 ATGACCTGGACGGCAAGC 60.046 61.111 0.00 0.00 35.61 4.01
218 219 2.894257 ATGACCTGGACGGCAAGCA 61.894 57.895 0.00 0.00 35.61 3.91
219 220 2.045926 GACCTGGACGGCAAGCAT 60.046 61.111 0.00 0.00 35.61 3.79
220 221 2.360350 ACCTGGACGGCAAGCATG 60.360 61.111 0.00 0.00 35.61 4.06
221 222 3.136123 CCTGGACGGCAAGCATGG 61.136 66.667 0.00 0.00 0.00 3.66
254 255 4.415150 CGTGAGCCAGGCCACCAT 62.415 66.667 21.07 0.00 0.00 3.55
255 256 2.753043 GTGAGCCAGGCCACCATG 60.753 66.667 17.92 0.00 0.00 3.66
256 257 4.051167 TGAGCCAGGCCACCATGG 62.051 66.667 11.19 11.19 41.55 3.66
265 266 3.214123 CCACCATGGCCGAGCATG 61.214 66.667 13.04 0.00 0.00 4.06
266 267 2.438975 CACCATGGCCGAGCATGT 60.439 61.111 13.04 0.00 0.00 3.21
267 268 1.153188 CACCATGGCCGAGCATGTA 60.153 57.895 13.04 0.00 0.00 2.29
268 269 1.153168 ACCATGGCCGAGCATGTAC 60.153 57.895 13.04 0.00 0.00 2.90
269 270 1.153188 CCATGGCCGAGCATGTACA 60.153 57.895 0.00 0.00 0.00 2.90
270 271 1.439353 CCATGGCCGAGCATGTACAC 61.439 60.000 0.00 0.00 0.00 2.90
271 272 0.744057 CATGGCCGAGCATGTACACA 60.744 55.000 0.00 0.00 0.00 3.72
272 273 0.035534 ATGGCCGAGCATGTACACAA 60.036 50.000 0.00 0.00 0.00 3.33
273 274 0.953471 TGGCCGAGCATGTACACAAC 60.953 55.000 0.00 0.00 0.00 3.32
274 275 0.953471 GGCCGAGCATGTACACAACA 60.953 55.000 0.00 0.00 43.86 3.33
284 285 3.477210 TGTACACAACATACAGTGCCA 57.523 42.857 0.00 0.00 39.30 4.92
285 286 4.014569 TGTACACAACATACAGTGCCAT 57.985 40.909 0.00 0.00 39.30 4.40
286 287 4.000325 TGTACACAACATACAGTGCCATC 59.000 43.478 0.00 0.00 39.30 3.51
287 288 2.076100 ACACAACATACAGTGCCATCG 58.924 47.619 0.00 0.00 39.30 3.84
288 289 1.086696 ACAACATACAGTGCCATCGC 58.913 50.000 0.00 0.00 0.00 4.58
289 290 1.339055 ACAACATACAGTGCCATCGCT 60.339 47.619 0.00 0.00 35.36 4.93
294 295 2.780643 CAGTGCCATCGCTGTTCG 59.219 61.111 0.00 0.00 43.83 3.95
295 296 2.029288 CAGTGCCATCGCTGTTCGT 61.029 57.895 0.00 0.00 43.83 3.85
296 297 2.029288 AGTGCCATCGCTGTTCGTG 61.029 57.895 0.00 0.00 39.67 4.35
297 298 2.741985 TGCCATCGCTGTTCGTGG 60.742 61.111 0.00 0.00 40.15 4.94
298 299 2.742372 GCCATCGCTGTTCGTGGT 60.742 61.111 0.00 0.00 39.70 4.16
299 300 3.027170 GCCATCGCTGTTCGTGGTG 62.027 63.158 0.00 0.00 39.70 4.17
300 301 1.667830 CCATCGCTGTTCGTGGTGT 60.668 57.895 0.00 0.00 39.67 4.16
301 302 1.492873 CATCGCTGTTCGTGGTGTG 59.507 57.895 0.00 0.00 39.67 3.82
302 303 1.667830 ATCGCTGTTCGTGGTGTGG 60.668 57.895 0.00 0.00 39.67 4.17
303 304 4.012895 CGCTGTTCGTGGTGTGGC 62.013 66.667 0.00 0.00 0.00 5.01
304 305 2.899838 GCTGTTCGTGGTGTGGCA 60.900 61.111 0.00 0.00 0.00 4.92
305 306 2.896801 GCTGTTCGTGGTGTGGCAG 61.897 63.158 0.00 0.00 0.00 4.85
306 307 1.523711 CTGTTCGTGGTGTGGCAGT 60.524 57.895 0.00 0.00 0.00 4.40
307 308 1.498865 CTGTTCGTGGTGTGGCAGTC 61.499 60.000 0.00 0.00 0.00 3.51
308 309 1.227556 GTTCGTGGTGTGGCAGTCT 60.228 57.895 0.00 0.00 0.00 3.24
309 310 0.032952 GTTCGTGGTGTGGCAGTCTA 59.967 55.000 0.00 0.00 0.00 2.59
310 311 0.317160 TTCGTGGTGTGGCAGTCTAG 59.683 55.000 0.00 0.00 0.00 2.43
311 312 1.738099 CGTGGTGTGGCAGTCTAGC 60.738 63.158 0.00 0.00 0.00 3.42
319 320 3.538614 GCAGTCTAGCCCGGATGA 58.461 61.111 0.73 0.00 0.00 2.92
320 321 1.068250 GCAGTCTAGCCCGGATGAC 59.932 63.158 0.73 5.48 0.00 3.06
321 322 1.360551 CAGTCTAGCCCGGATGACG 59.639 63.158 0.73 0.00 43.80 4.35
322 323 1.076923 AGTCTAGCCCGGATGACGT 60.077 57.895 0.73 0.00 42.24 4.34
323 324 1.102222 AGTCTAGCCCGGATGACGTC 61.102 60.000 9.11 9.11 42.24 4.34
324 325 1.102222 GTCTAGCCCGGATGACGTCT 61.102 60.000 17.92 1.84 42.24 4.18
325 326 0.818445 TCTAGCCCGGATGACGTCTC 60.818 60.000 17.92 11.34 42.24 3.36
326 327 1.077285 TAGCCCGGATGACGTCTCA 60.077 57.895 17.92 0.00 42.24 3.27
327 328 0.467474 TAGCCCGGATGACGTCTCAT 60.467 55.000 17.92 2.86 42.24 2.90
328 329 1.592669 GCCCGGATGACGTCTCATG 60.593 63.158 17.92 4.37 42.24 3.07
329 330 1.816537 CCCGGATGACGTCTCATGT 59.183 57.895 17.92 0.00 42.24 3.21
330 331 0.175760 CCCGGATGACGTCTCATGTT 59.824 55.000 17.92 0.00 42.24 2.71
331 332 1.405526 CCCGGATGACGTCTCATGTTT 60.406 52.381 17.92 0.00 42.24 2.83
332 333 2.346803 CCGGATGACGTCTCATGTTTT 58.653 47.619 17.92 0.00 42.24 2.43
333 334 2.742053 CCGGATGACGTCTCATGTTTTT 59.258 45.455 17.92 0.00 42.24 1.94
334 335 3.930229 CCGGATGACGTCTCATGTTTTTA 59.070 43.478 17.92 0.00 42.24 1.52
335 336 4.032900 CCGGATGACGTCTCATGTTTTTAG 59.967 45.833 17.92 0.00 42.24 1.85
336 337 4.625742 CGGATGACGTCTCATGTTTTTAGT 59.374 41.667 17.92 0.00 37.24 2.24
337 338 5.120208 CGGATGACGTCTCATGTTTTTAGTT 59.880 40.000 17.92 0.00 37.24 2.24
338 339 6.309494 CGGATGACGTCTCATGTTTTTAGTTA 59.691 38.462 17.92 0.00 37.24 2.24
339 340 7.148705 CGGATGACGTCTCATGTTTTTAGTTAA 60.149 37.037 17.92 0.00 37.24 2.01
340 341 8.500773 GGATGACGTCTCATGTTTTTAGTTAAA 58.499 33.333 17.92 0.00 37.24 1.52
341 342 9.872757 GATGACGTCTCATGTTTTTAGTTAAAA 57.127 29.630 17.92 0.00 37.24 1.52
352 353 6.900184 GTTTTTAGTTAAAACCGTGTTCACG 58.100 36.000 16.87 16.87 46.40 4.35
353 354 5.793026 TTTAGTTAAAACCGTGTTCACGT 57.207 34.783 20.93 8.97 0.00 4.49
354 355 3.931285 AGTTAAAACCGTGTTCACGTC 57.069 42.857 20.93 5.67 0.00 4.34
355 356 2.282290 AGTTAAAACCGTGTTCACGTCG 59.718 45.455 20.93 11.14 0.00 5.12
357 358 0.459934 AAAACCGTGTTCACGTCGGA 60.460 50.000 18.27 0.00 46.05 4.55
358 359 0.249573 AAACCGTGTTCACGTCGGAT 60.250 50.000 18.27 4.67 46.05 4.18
359 360 0.942410 AACCGTGTTCACGTCGGATG 60.942 55.000 18.27 9.31 46.05 3.51
360 361 1.081041 CCGTGTTCACGTCGGATGA 60.081 57.895 20.93 0.00 46.05 2.92
361 362 0.665068 CCGTGTTCACGTCGGATGAA 60.665 55.000 20.93 0.00 46.05 2.57
362 363 1.133407 CGTGTTCACGTCGGATGAAA 58.867 50.000 15.81 0.00 37.80 2.69
363 364 1.523515 CGTGTTCACGTCGGATGAAAA 59.476 47.619 15.81 0.00 37.80 2.29
364 365 2.658224 CGTGTTCACGTCGGATGAAAAC 60.658 50.000 15.81 8.24 39.83 2.43
365 366 1.868498 TGTTCACGTCGGATGAAAACC 59.132 47.619 3.82 0.00 37.80 3.27
366 367 1.868498 GTTCACGTCGGATGAAAACCA 59.132 47.619 3.82 0.00 37.80 3.67
367 368 1.504359 TCACGTCGGATGAAAACCAC 58.496 50.000 3.82 0.00 0.00 4.16
368 369 1.202545 TCACGTCGGATGAAAACCACA 60.203 47.619 3.82 0.00 0.00 4.17
369 370 1.600013 CACGTCGGATGAAAACCACAA 59.400 47.619 3.82 0.00 0.00 3.33
370 371 2.032302 CACGTCGGATGAAAACCACAAA 59.968 45.455 3.82 0.00 0.00 2.83
371 372 2.683867 ACGTCGGATGAAAACCACAAAA 59.316 40.909 3.82 0.00 0.00 2.44
372 373 3.128938 ACGTCGGATGAAAACCACAAAAA 59.871 39.130 3.82 0.00 0.00 1.94
373 374 3.728718 CGTCGGATGAAAACCACAAAAAG 59.271 43.478 0.00 0.00 0.00 2.27
374 375 4.678622 GTCGGATGAAAACCACAAAAAGT 58.321 39.130 0.00 0.00 0.00 2.66
388 389 5.106442 CACAAAAAGTGGTACAAAAGGACC 58.894 41.667 0.00 0.00 44.16 4.46
389 390 4.142337 ACAAAAAGTGGTACAAAAGGACCG 60.142 41.667 0.00 0.00 44.16 4.79
390 391 3.564053 AAAGTGGTACAAAAGGACCGA 57.436 42.857 0.00 0.00 44.16 4.69
391 392 3.782656 AAGTGGTACAAAAGGACCGAT 57.217 42.857 0.00 0.00 44.16 4.18
392 393 3.329929 AGTGGTACAAAAGGACCGATC 57.670 47.619 0.00 0.00 44.16 3.69
393 394 2.904434 AGTGGTACAAAAGGACCGATCT 59.096 45.455 0.00 0.00 44.16 2.75
394 395 3.326880 AGTGGTACAAAAGGACCGATCTT 59.673 43.478 0.00 0.00 44.16 2.40
395 396 4.529377 AGTGGTACAAAAGGACCGATCTTA 59.471 41.667 0.00 0.00 44.16 2.10
396 397 5.189145 AGTGGTACAAAAGGACCGATCTTAT 59.811 40.000 0.00 0.00 44.16 1.73
397 398 5.522824 GTGGTACAAAAGGACCGATCTTATC 59.477 44.000 0.00 0.00 44.16 1.75
398 399 5.055144 GGTACAAAAGGACCGATCTTATCC 58.945 45.833 0.00 0.00 0.00 2.59
399 400 4.152284 ACAAAAGGACCGATCTTATCCC 57.848 45.455 3.77 0.00 32.47 3.85
400 401 3.131396 CAAAAGGACCGATCTTATCCCG 58.869 50.000 3.77 0.00 32.47 5.14
407 408 3.314541 CCGATCTTATCCCGGTTAAGG 57.685 52.381 16.98 5.75 38.55 2.69
408 409 2.895404 CCGATCTTATCCCGGTTAAGGA 59.105 50.000 16.98 1.25 38.55 3.36
409 410 3.056749 CCGATCTTATCCCGGTTAAGGAG 60.057 52.174 16.98 10.70 36.67 3.69
410 411 3.573110 CGATCTTATCCCGGTTAAGGAGT 59.427 47.826 16.98 7.59 36.67 3.85
411 412 4.038883 CGATCTTATCCCGGTTAAGGAGTT 59.961 45.833 16.98 4.98 36.67 3.01
412 413 4.748277 TCTTATCCCGGTTAAGGAGTTG 57.252 45.455 16.98 0.00 36.67 3.16
413 414 4.355549 TCTTATCCCGGTTAAGGAGTTGA 58.644 43.478 16.98 0.00 36.67 3.18
414 415 4.404715 TCTTATCCCGGTTAAGGAGTTGAG 59.595 45.833 16.98 0.00 36.67 3.02
415 416 1.272807 TCCCGGTTAAGGAGTTGAGG 58.727 55.000 0.00 0.00 0.00 3.86
416 417 1.203212 TCCCGGTTAAGGAGTTGAGGA 60.203 52.381 0.00 0.00 0.00 3.71
417 418 1.626825 CCCGGTTAAGGAGTTGAGGAA 59.373 52.381 0.00 0.00 0.00 3.36
418 419 2.614734 CCCGGTTAAGGAGTTGAGGAAC 60.615 54.545 0.00 0.00 0.00 3.62
419 420 2.614734 CCGGTTAAGGAGTTGAGGAACC 60.615 54.545 0.00 0.00 34.30 3.62
420 421 2.038033 CGGTTAAGGAGTTGAGGAACCA 59.962 50.000 0.00 0.00 36.88 3.67
421 422 3.495453 CGGTTAAGGAGTTGAGGAACCAA 60.495 47.826 0.00 0.00 36.88 3.67
422 423 4.072839 GGTTAAGGAGTTGAGGAACCAAG 58.927 47.826 0.00 0.00 37.01 3.61
423 424 2.959465 AAGGAGTTGAGGAACCAAGG 57.041 50.000 0.00 0.00 31.81 3.61
424 425 1.821088 AGGAGTTGAGGAACCAAGGT 58.179 50.000 0.00 0.00 31.81 3.50
425 426 2.136026 AGGAGTTGAGGAACCAAGGTT 58.864 47.619 3.73 3.73 41.54 3.50
426 427 2.514160 AGGAGTTGAGGAACCAAGGTTT 59.486 45.455 5.87 0.00 38.60 3.27
427 428 2.623416 GGAGTTGAGGAACCAAGGTTTG 59.377 50.000 5.87 0.00 38.60 2.93
428 429 2.031870 AGTTGAGGAACCAAGGTTTGC 58.968 47.619 5.87 0.02 38.60 3.68
429 430 1.068588 GTTGAGGAACCAAGGTTTGCC 59.931 52.381 5.87 3.88 38.60 4.52
430 431 0.821711 TGAGGAACCAAGGTTTGCCG 60.822 55.000 5.87 0.00 38.60 5.69
431 432 1.524008 GAGGAACCAAGGTTTGCCGG 61.524 60.000 5.87 0.00 38.60 6.13
432 433 1.830847 GGAACCAAGGTTTGCCGGT 60.831 57.895 1.90 0.00 38.60 5.28
433 434 1.396607 GGAACCAAGGTTTGCCGGTT 61.397 55.000 1.90 0.00 39.95 4.44
434 435 0.462375 GAACCAAGGTTTGCCGGTTT 59.538 50.000 1.90 0.00 38.20 3.27
435 436 0.906066 AACCAAGGTTTGCCGGTTTT 59.094 45.000 1.90 0.00 35.74 2.43
436 437 0.176910 ACCAAGGTTTGCCGGTTTTG 59.823 50.000 1.90 0.00 40.50 2.44
437 438 0.461961 CCAAGGTTTGCCGGTTTTGA 59.538 50.000 1.90 0.00 40.50 2.69
438 439 1.134670 CCAAGGTTTGCCGGTTTTGAA 60.135 47.619 1.90 0.00 40.50 2.69
439 440 2.200899 CAAGGTTTGCCGGTTTTGAAG 58.799 47.619 1.90 0.00 40.50 3.02
440 441 1.480789 AGGTTTGCCGGTTTTGAAGT 58.519 45.000 1.90 0.00 40.50 3.01
441 442 1.828595 AGGTTTGCCGGTTTTGAAGTT 59.171 42.857 1.90 0.00 40.50 2.66
442 443 1.930503 GGTTTGCCGGTTTTGAAGTTG 59.069 47.619 1.90 0.00 0.00 3.16
443 444 2.417515 GGTTTGCCGGTTTTGAAGTTGA 60.418 45.455 1.90 0.00 0.00 3.18
444 445 3.254892 GTTTGCCGGTTTTGAAGTTGAA 58.745 40.909 1.90 0.00 0.00 2.69
445 446 2.861462 TGCCGGTTTTGAAGTTGAAG 57.139 45.000 1.90 0.00 0.00 3.02
446 447 1.407258 TGCCGGTTTTGAAGTTGAAGG 59.593 47.619 1.90 0.00 0.00 3.46
447 448 1.679153 GCCGGTTTTGAAGTTGAAGGA 59.321 47.619 1.90 0.00 0.00 3.36
448 449 2.296190 GCCGGTTTTGAAGTTGAAGGAT 59.704 45.455 1.90 0.00 0.00 3.24
449 450 3.504520 GCCGGTTTTGAAGTTGAAGGATA 59.495 43.478 1.90 0.00 0.00 2.59
450 451 4.022676 GCCGGTTTTGAAGTTGAAGGATAA 60.023 41.667 1.90 0.00 0.00 1.75
451 452 5.699839 CCGGTTTTGAAGTTGAAGGATAAG 58.300 41.667 0.00 0.00 0.00 1.73
452 453 5.240844 CCGGTTTTGAAGTTGAAGGATAAGT 59.759 40.000 0.00 0.00 0.00 2.24
453 454 6.238925 CCGGTTTTGAAGTTGAAGGATAAGTT 60.239 38.462 0.00 0.00 0.00 2.66
454 455 6.856426 CGGTTTTGAAGTTGAAGGATAAGTTC 59.144 38.462 0.00 0.00 37.76 3.01
455 456 7.255139 CGGTTTTGAAGTTGAAGGATAAGTTCT 60.255 37.037 0.00 0.00 37.99 3.01
456 457 9.063615 GGTTTTGAAGTTGAAGGATAAGTTCTA 57.936 33.333 0.00 0.00 37.99 2.10
476 477 9.372369 AGTTCTATATTTTCGAAAGAGTTGAGG 57.628 33.333 10.98 0.00 43.69 3.86
477 478 8.604890 GTTCTATATTTTCGAAAGAGTTGAGGG 58.395 37.037 10.98 0.00 43.69 4.30
478 479 8.074613 TCTATATTTTCGAAAGAGTTGAGGGA 57.925 34.615 10.98 0.00 43.69 4.20
479 480 6.986904 ATATTTTCGAAAGAGTTGAGGGAC 57.013 37.500 10.98 0.00 43.69 4.46
480 481 2.433868 TTCGAAAGAGTTGAGGGACG 57.566 50.000 0.00 0.00 43.69 4.79
481 482 1.612676 TCGAAAGAGTTGAGGGACGA 58.387 50.000 0.00 0.00 34.84 4.20
482 483 1.958579 TCGAAAGAGTTGAGGGACGAA 59.041 47.619 0.00 0.00 34.84 3.85
483 484 2.363038 TCGAAAGAGTTGAGGGACGAAA 59.637 45.455 0.00 0.00 34.84 3.46
484 485 3.128349 CGAAAGAGTTGAGGGACGAAAA 58.872 45.455 0.00 0.00 0.00 2.29
485 486 3.558418 CGAAAGAGTTGAGGGACGAAAAA 59.442 43.478 0.00 0.00 0.00 1.94
486 487 4.213482 CGAAAGAGTTGAGGGACGAAAAAT 59.787 41.667 0.00 0.00 0.00 1.82
487 488 5.407387 CGAAAGAGTTGAGGGACGAAAAATA 59.593 40.000 0.00 0.00 0.00 1.40
488 489 6.092259 CGAAAGAGTTGAGGGACGAAAAATAT 59.908 38.462 0.00 0.00 0.00 1.28
489 490 7.277098 CGAAAGAGTTGAGGGACGAAAAATATA 59.723 37.037 0.00 0.00 0.00 0.86
490 491 7.845066 AAGAGTTGAGGGACGAAAAATATAC 57.155 36.000 0.00 0.00 0.00 1.47
491 492 7.184067 AGAGTTGAGGGACGAAAAATATACT 57.816 36.000 0.00 0.00 0.00 2.12
492 493 7.621796 AGAGTTGAGGGACGAAAAATATACTT 58.378 34.615 0.00 0.00 0.00 2.24
493 494 7.764901 AGAGTTGAGGGACGAAAAATATACTTC 59.235 37.037 0.00 0.00 0.00 3.01
494 495 7.621796 AGTTGAGGGACGAAAAATATACTTCT 58.378 34.615 0.00 0.00 0.00 2.85
495 496 7.764901 AGTTGAGGGACGAAAAATATACTTCTC 59.235 37.037 0.00 0.00 0.00 2.87
496 497 6.579865 TGAGGGACGAAAAATATACTTCTCC 58.420 40.000 0.00 0.00 0.00 3.71
497 498 5.926663 AGGGACGAAAAATATACTTCTCCC 58.073 41.667 16.63 16.63 38.26 4.30
584 585 9.826574 AAATGTAAGTGATTATCGGCTAAAGTA 57.173 29.630 0.00 0.00 0.00 2.24
598 599 6.041637 TCGGCTAAAGTACCATGATTATCAGT 59.958 38.462 0.29 0.00 0.00 3.41
620 621 8.243426 TCAGTGAATAAAACAATTATGTCCAGC 58.757 33.333 0.00 0.00 39.40 4.85
624 625 4.870123 AAAACAATTATGTCCAGCAGCA 57.130 36.364 0.00 0.00 39.40 4.41
634 635 8.818622 ATTATGTCCAGCAGCATTATCATTAT 57.181 30.769 0.00 0.00 0.00 1.28
699 1638 8.699945 TTGTATTGCCTTCAGCGAAGAATACAA 61.700 37.037 27.19 27.19 44.87 2.41
702 1641 5.931441 GCCTTCAGCGAAGAATACAATAT 57.069 39.130 16.51 0.00 41.71 1.28
703 1642 5.921429 GCCTTCAGCGAAGAATACAATATC 58.079 41.667 16.51 0.00 41.71 1.63
704 1643 5.698545 GCCTTCAGCGAAGAATACAATATCT 59.301 40.000 16.51 0.00 41.71 1.98
705 1644 6.203723 GCCTTCAGCGAAGAATACAATATCTT 59.796 38.462 16.51 0.00 41.71 2.40
706 1645 7.254932 GCCTTCAGCGAAGAATACAATATCTTT 60.255 37.037 16.51 0.00 41.71 2.52
707 1646 8.616076 CCTTCAGCGAAGAATACAATATCTTTT 58.384 33.333 16.51 0.00 41.71 2.27
708 1647 9.994432 CTTCAGCGAAGAATACAATATCTTTTT 57.006 29.630 11.35 0.00 41.71 1.94
795 1734 4.748277 TTTTATGCTCTACGCTAAGGGT 57.252 40.909 0.00 0.00 40.11 4.34
797 1736 2.074729 ATGCTCTACGCTAAGGGTCT 57.925 50.000 0.00 0.00 40.11 3.85
901 1840 2.675658 TCAACAAAGAGGAAAGGGGG 57.324 50.000 0.00 0.00 0.00 5.40
997 1943 2.363147 AGGAGGAGGAGGTCGTGC 60.363 66.667 0.00 0.00 0.00 5.34
1275 2230 6.713903 AGCCTCTATATTCATCCACAATTGTG 59.286 38.462 28.18 28.18 45.23 3.33
1333 2345 5.593968 TGCGAACTGAATTACGGTATGTAT 58.406 37.500 0.00 0.00 37.07 2.29
1338 2350 6.659745 ACTGAATTACGGTATGTATGGCTA 57.340 37.500 0.00 0.00 36.20 3.93
1339 2351 6.688578 ACTGAATTACGGTATGTATGGCTAG 58.311 40.000 0.00 0.00 36.20 3.42
1349 2361 6.338937 GGTATGTATGGCTAGCCTGTATAAC 58.661 44.000 33.07 22.50 36.94 1.89
1499 3972 7.309194 GGGATCACTGTATTTTGCTAAAACTGT 60.309 37.037 0.00 5.38 32.37 3.55
1525 4001 4.178956 ACTTTGTACAAATGGTGGGACT 57.821 40.909 20.83 0.00 0.00 3.85
1539 4015 5.338632 TGGTGGGACTATAGTTTTCTCTCA 58.661 41.667 6.88 0.00 0.00 3.27
1608 4088 6.884472 TTAACTCACTGGGATAGAAATGGA 57.116 37.500 0.00 0.00 0.00 3.41
1626 4117 5.921962 ATGGAAAGAAGGGCTGTTTATTC 57.078 39.130 0.00 0.00 0.00 1.75
1707 4217 7.418408 CAATGCGATACACCGATAGTATCTAT 58.582 38.462 8.49 0.00 43.48 1.98
1713 4223 8.880750 CGATACACCGATAGTATCTATGAAGAA 58.119 37.037 14.28 2.14 43.48 2.52
1743 4253 5.012664 TGGGTTAGAAGACTCTGCAAACATA 59.987 40.000 0.00 0.00 32.70 2.29
1776 4286 4.141041 AGCATAGTCTCCTCAGATGTAGGT 60.141 45.833 0.00 0.00 35.48 3.08
1835 4345 2.549754 ACAGCATTGACTACAAGTGCAC 59.450 45.455 9.40 9.40 39.97 4.57
1853 4363 2.349886 GCACTTATCTCTTTCACCGCAG 59.650 50.000 0.00 0.00 0.00 5.18
1926 4443 5.774630 TGTTCCAATCGGGTTTCATTTTAC 58.225 37.500 0.00 0.00 38.11 2.01
1995 4518 4.284490 TGAACAGGAGTCATCTTAGTGCTT 59.716 41.667 0.00 0.00 0.00 3.91
1996 4519 4.199432 ACAGGAGTCATCTTAGTGCTTG 57.801 45.455 0.00 0.00 0.00 4.01
1997 4520 3.580458 ACAGGAGTCATCTTAGTGCTTGT 59.420 43.478 0.00 0.00 0.00 3.16
1998 4521 3.931468 CAGGAGTCATCTTAGTGCTTGTG 59.069 47.826 0.00 0.00 0.00 3.33
1999 4522 3.834813 AGGAGTCATCTTAGTGCTTGTGA 59.165 43.478 0.00 0.00 0.00 3.58
2000 4523 4.284490 AGGAGTCATCTTAGTGCTTGTGAA 59.716 41.667 0.00 0.00 0.00 3.18
2001 4524 4.629200 GGAGTCATCTTAGTGCTTGTGAAG 59.371 45.833 0.00 0.00 0.00 3.02
2002 4525 5.220710 AGTCATCTTAGTGCTTGTGAAGT 57.779 39.130 0.00 0.00 0.00 3.01
2003 4526 6.346477 AGTCATCTTAGTGCTTGTGAAGTA 57.654 37.500 0.00 0.00 0.00 2.24
2007 4530 5.784578 TCTTAGTGCTTGTGAAGTAGTGA 57.215 39.130 0.00 0.00 0.00 3.41
2066 4596 2.429610 AGCTTTTATGGCATGCTTCCAG 59.570 45.455 18.92 7.62 36.98 3.86
2112 4642 5.347364 GGATGAGCATACTTTAATCTCTCGC 59.653 44.000 0.00 0.00 0.00 5.03
2113 4643 5.262588 TGAGCATACTTTAATCTCTCGCA 57.737 39.130 0.00 0.00 0.00 5.10
2115 4645 4.372656 AGCATACTTTAATCTCTCGCACC 58.627 43.478 0.00 0.00 0.00 5.01
2125 4655 2.337583 TCTCTCGCACCATTCTTTTCG 58.662 47.619 0.00 0.00 0.00 3.46
2164 4694 2.449967 TAACTGGCCCAGGTCGAGGA 62.450 60.000 16.70 0.00 35.51 3.71
2226 4756 3.922171 AATCAGGGAAGATGGAGTGTC 57.078 47.619 0.00 0.00 0.00 3.67
2259 4792 6.431722 AGCCATTTAGCAAGGGTCTAATAAA 58.568 36.000 0.00 0.00 36.13 1.40
2329 4862 0.480252 AAACCCTTGAGAGCTGGCTT 59.520 50.000 0.00 0.00 0.00 4.35
2370 4903 1.160329 ACAACTGTCCTGAACGCAGC 61.160 55.000 0.00 0.00 40.91 5.25
2448 4981 0.880278 GGCATCGCGGATAAAGCTCA 60.880 55.000 6.13 0.00 0.00 4.26
2536 5069 7.173907 AGTGATGAAAGTGGAGTTATCAAACTG 59.826 37.037 0.00 0.00 46.09 3.16
2572 5105 8.035394 GTCATTACTATCTGTCTGGAAAGAACA 58.965 37.037 0.00 0.00 0.00 3.18
2728 5276 3.914426 TCCTTGATGGACTTTAGGCTC 57.086 47.619 0.00 0.00 40.56 4.70
2735 5283 4.348168 TGATGGACTTTAGGCTCTAATCCC 59.652 45.833 0.00 0.00 0.00 3.85
2739 5287 2.434702 ACTTTAGGCTCTAATCCCGTGG 59.565 50.000 0.00 0.00 0.00 4.94
2785 5356 3.353370 TGGAGTGATGCAATGATGTGA 57.647 42.857 0.00 0.00 0.00 3.58
2787 5358 4.274978 TGGAGTGATGCAATGATGTGATT 58.725 39.130 0.00 0.00 0.00 2.57
2798 5463 7.751732 TGCAATGATGTGATTCACTAAGTTAC 58.248 34.615 17.26 4.17 35.11 2.50
3035 5730 9.904198 TCTATGGTTTGTATTGATTTCTCATGA 57.096 29.630 0.00 0.00 0.00 3.07
3112 5807 2.221517 GCATTGCATTTCGTTGCTGTTT 59.778 40.909 3.15 0.00 43.18 2.83
3115 5810 5.557893 GCATTGCATTTCGTTGCTGTTTTTA 60.558 36.000 3.15 0.00 43.18 1.52
3155 5850 4.702131 GCACAACTAGGAAGATGGTTCAAT 59.298 41.667 0.00 0.00 30.07 2.57
3159 5854 7.607991 CACAACTAGGAAGATGGTTCAATTAGT 59.392 37.037 0.00 0.00 30.07 2.24
3207 5908 3.619483 CAGTTCTGAACCACGTGTTTGTA 59.381 43.478 15.65 0.00 37.29 2.41
3232 5937 1.902508 AGGCGTCTCTTTCCTGAATGA 59.097 47.619 0.00 0.00 0.00 2.57
3323 6032 4.876107 GGATCTTTACAAAGGAAGCGATCA 59.124 41.667 2.04 0.00 36.67 2.92
3485 7842 8.849543 TCCTAAATCAAGTACATTACCTAGGT 57.150 34.615 20.57 20.57 0.00 3.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 4.455533 GCGAATCATGAGTTATGCCCATAA 59.544 41.667 0.09 0.00 36.70 1.90
5 6 4.002982 GCGAATCATGAGTTATGCCCATA 58.997 43.478 0.09 0.00 36.70 2.74
6 7 2.816087 GCGAATCATGAGTTATGCCCAT 59.184 45.455 0.09 0.00 36.70 4.00
7 8 2.221169 GCGAATCATGAGTTATGCCCA 58.779 47.619 0.09 0.00 36.70 5.36
8 9 1.195448 CGCGAATCATGAGTTATGCCC 59.805 52.381 0.00 0.00 36.70 5.36
9 10 1.867233 ACGCGAATCATGAGTTATGCC 59.133 47.619 15.93 0.00 36.70 4.40
10 11 2.896289 CACGCGAATCATGAGTTATGC 58.104 47.619 15.93 3.83 36.70 3.14
11 12 2.657427 CGCACGCGAATCATGAGTTATG 60.657 50.000 15.93 0.00 42.83 1.90
12 13 1.522676 CGCACGCGAATCATGAGTTAT 59.477 47.619 15.93 0.00 42.83 1.89
13 14 0.920664 CGCACGCGAATCATGAGTTA 59.079 50.000 15.93 0.00 42.83 2.24
14 15 1.709760 CGCACGCGAATCATGAGTT 59.290 52.632 15.93 0.00 42.83 3.01
15 16 2.802667 GCGCACGCGAATCATGAGT 61.803 57.895 15.93 0.00 42.83 3.41
16 17 2.053638 GCGCACGCGAATCATGAG 60.054 61.111 15.93 2.44 42.83 2.90
17 18 3.563088 GGCGCACGCGAATCATGA 61.563 61.111 15.93 0.00 43.06 3.07
18 19 3.566853 AGGCGCACGCGAATCATG 61.567 61.111 15.93 0.00 43.06 3.07
19 20 3.566853 CAGGCGCACGCGAATCAT 61.567 61.111 15.93 0.00 43.06 2.45
21 22 2.449525 TAACAGGCGCACGCGAATC 61.450 57.895 15.93 3.74 43.06 2.52
22 23 2.433491 TAACAGGCGCACGCGAAT 60.433 55.556 15.93 0.00 43.06 3.34
23 24 3.408020 GTAACAGGCGCACGCGAA 61.408 61.111 15.93 0.00 43.06 4.70
24 25 4.351938 AGTAACAGGCGCACGCGA 62.352 61.111 15.93 0.00 43.06 5.87
25 26 3.838795 GAGTAACAGGCGCACGCG 61.839 66.667 10.83 3.53 43.06 6.01
26 27 3.838795 CGAGTAACAGGCGCACGC 61.839 66.667 10.83 6.46 41.06 5.34
31 32 0.370273 GAACATGCGAGTAACAGGCG 59.630 55.000 0.00 0.00 0.00 5.52
32 33 1.661112 GAGAACATGCGAGTAACAGGC 59.339 52.381 0.00 0.00 0.00 4.85
33 34 1.920574 CGAGAACATGCGAGTAACAGG 59.079 52.381 0.00 0.00 0.00 4.00
34 35 1.321743 GCGAGAACATGCGAGTAACAG 59.678 52.381 0.00 0.00 0.00 3.16
35 36 1.346365 GCGAGAACATGCGAGTAACA 58.654 50.000 0.00 0.00 0.00 2.41
36 37 0.645868 GGCGAGAACATGCGAGTAAC 59.354 55.000 0.00 0.00 0.00 2.50
37 38 0.800683 CGGCGAGAACATGCGAGTAA 60.801 55.000 0.00 0.00 0.00 2.24
38 39 1.226575 CGGCGAGAACATGCGAGTA 60.227 57.895 0.00 0.00 0.00 2.59
39 40 2.507102 CGGCGAGAACATGCGAGT 60.507 61.111 0.00 0.00 0.00 4.18
40 41 3.257561 CCGGCGAGAACATGCGAG 61.258 66.667 9.30 0.00 0.00 5.03
41 42 4.812476 CCCGGCGAGAACATGCGA 62.812 66.667 9.30 0.00 0.00 5.10
42 43 4.812476 TCCCGGCGAGAACATGCG 62.812 66.667 9.30 0.00 0.00 4.73
43 44 2.435938 TTCCCGGCGAGAACATGC 60.436 61.111 9.30 0.00 0.00 4.06
44 45 1.815421 CCTTCCCGGCGAGAACATG 60.815 63.158 9.30 0.00 0.00 3.21
45 46 2.584608 CCTTCCCGGCGAGAACAT 59.415 61.111 9.30 0.00 0.00 2.71
46 47 3.702048 CCCTTCCCGGCGAGAACA 61.702 66.667 9.30 0.00 0.00 3.18
47 48 4.468689 CCCCTTCCCGGCGAGAAC 62.469 72.222 9.30 0.00 0.00 3.01
53 54 3.282374 ATGTTGACCCCTTCCCGGC 62.282 63.158 0.00 0.00 0.00 6.13
54 55 1.077716 GATGTTGACCCCTTCCCGG 60.078 63.158 0.00 0.00 0.00 5.73
55 56 0.255890 ATGATGTTGACCCCTTCCCG 59.744 55.000 0.00 0.00 0.00 5.14
56 57 1.005924 ACATGATGTTGACCCCTTCCC 59.994 52.381 0.00 0.00 0.00 3.97
57 58 2.514458 ACATGATGTTGACCCCTTCC 57.486 50.000 0.00 0.00 0.00 3.46
58 59 2.936498 CGTACATGATGTTGACCCCTTC 59.064 50.000 2.29 0.00 0.00 3.46
59 60 2.304761 ACGTACATGATGTTGACCCCTT 59.695 45.455 2.29 0.00 0.00 3.95
60 61 1.906574 ACGTACATGATGTTGACCCCT 59.093 47.619 2.29 0.00 0.00 4.79
61 62 2.396590 ACGTACATGATGTTGACCCC 57.603 50.000 2.29 0.00 0.00 4.95
62 63 2.855963 CGTACGTACATGATGTTGACCC 59.144 50.000 24.50 0.00 0.00 4.46
63 64 3.302434 CACGTACGTACATGATGTTGACC 59.698 47.826 22.34 0.00 0.00 4.02
64 65 3.241552 GCACGTACGTACATGATGTTGAC 60.242 47.826 24.66 1.99 0.00 3.18
65 66 2.918600 GCACGTACGTACATGATGTTGA 59.081 45.455 24.66 0.00 0.00 3.18
66 67 2.284232 CGCACGTACGTACATGATGTTG 60.284 50.000 24.66 8.51 0.00 3.33
67 68 1.915350 CGCACGTACGTACATGATGTT 59.085 47.619 24.66 0.00 0.00 2.71
68 69 1.135603 ACGCACGTACGTACATGATGT 60.136 47.619 24.66 17.86 46.19 3.06
69 70 1.251762 CACGCACGTACGTACATGATG 59.748 52.381 24.66 16.87 46.34 3.07
70 71 1.135603 ACACGCACGTACGTACATGAT 60.136 47.619 24.66 9.34 46.34 2.45
71 72 0.238025 ACACGCACGTACGTACATGA 59.762 50.000 24.66 0.00 46.34 3.07
72 73 0.631745 GACACGCACGTACGTACATG 59.368 55.000 22.34 20.88 46.34 3.21
73 74 0.518636 AGACACGCACGTACGTACAT 59.481 50.000 22.34 7.61 46.34 2.29
74 75 0.307453 AAGACACGCACGTACGTACA 59.693 50.000 22.34 0.00 46.34 2.90
75 76 0.699151 CAAGACACGCACGTACGTAC 59.301 55.000 22.34 15.19 46.34 3.67
76 77 0.998226 GCAAGACACGCACGTACGTA 60.998 55.000 22.34 0.00 46.34 3.57
78 79 2.464189 GCAAGACACGCACGTACG 59.536 61.111 15.01 15.01 39.50 3.67
79 80 2.851104 GGCAAGACACGCACGTAC 59.149 61.111 0.00 0.00 0.00 3.67
80 81 2.731721 CGGCAAGACACGCACGTA 60.732 61.111 0.00 0.00 0.00 3.57
86 87 3.554692 GATCGCCGGCAAGACACG 61.555 66.667 28.98 8.23 0.00 4.49
87 88 1.766143 GATGATCGCCGGCAAGACAC 61.766 60.000 28.98 14.11 0.00 3.67
88 89 1.521457 GATGATCGCCGGCAAGACA 60.521 57.895 28.98 19.90 0.00 3.41
89 90 0.032130 TAGATGATCGCCGGCAAGAC 59.968 55.000 28.98 14.69 0.00 3.01
90 91 0.315251 CTAGATGATCGCCGGCAAGA 59.685 55.000 28.98 17.47 0.00 3.02
91 92 1.287730 GCTAGATGATCGCCGGCAAG 61.288 60.000 28.98 11.67 0.00 4.01
92 93 1.300931 GCTAGATGATCGCCGGCAA 60.301 57.895 28.98 9.13 0.00 4.52
93 94 2.147315 GAGCTAGATGATCGCCGGCA 62.147 60.000 28.98 14.46 0.00 5.69
94 95 1.445238 GAGCTAGATGATCGCCGGC 60.445 63.158 19.07 19.07 0.00 6.13
95 96 4.878774 GAGCTAGATGATCGCCGG 57.121 61.111 0.00 0.00 0.00 6.13
100 101 4.979197 ACGTGAAAATCGAGCTAGATGATC 59.021 41.667 10.31 11.58 0.00 2.92
101 102 4.742167 CACGTGAAAATCGAGCTAGATGAT 59.258 41.667 10.90 2.35 0.00 2.45
102 103 4.105486 CACGTGAAAATCGAGCTAGATGA 58.895 43.478 10.90 0.00 0.00 2.92
103 104 4.105486 TCACGTGAAAATCGAGCTAGATG 58.895 43.478 17.62 0.00 0.00 2.90
104 105 4.355437 CTCACGTGAAAATCGAGCTAGAT 58.645 43.478 20.49 3.13 0.00 1.98
105 106 3.759418 CTCACGTGAAAATCGAGCTAGA 58.241 45.455 20.49 0.00 0.00 2.43
106 107 2.280183 GCTCACGTGAAAATCGAGCTAG 59.720 50.000 20.49 4.20 44.47 3.42
107 108 2.259618 GCTCACGTGAAAATCGAGCTA 58.740 47.619 20.49 0.00 44.47 3.32
108 109 1.071605 GCTCACGTGAAAATCGAGCT 58.928 50.000 20.49 0.00 44.47 4.09
109 110 3.569957 GCTCACGTGAAAATCGAGC 57.430 52.632 20.49 13.52 41.98 5.03
110 111 2.029728 GGATGCTCACGTGAAAATCGAG 59.970 50.000 20.49 7.03 0.00 4.04
111 112 1.999735 GGATGCTCACGTGAAAATCGA 59.000 47.619 20.49 0.18 0.00 3.59
112 113 1.731709 TGGATGCTCACGTGAAAATCG 59.268 47.619 20.49 8.56 0.00 3.34
113 114 3.829886 TTGGATGCTCACGTGAAAATC 57.170 42.857 20.49 21.97 0.00 2.17
114 115 3.612479 GCTTTGGATGCTCACGTGAAAAT 60.612 43.478 20.49 15.38 0.00 1.82
115 116 2.287547 GCTTTGGATGCTCACGTGAAAA 60.288 45.455 20.49 14.23 0.00 2.29
116 117 1.266718 GCTTTGGATGCTCACGTGAAA 59.733 47.619 20.49 11.35 0.00 2.69
117 118 0.874390 GCTTTGGATGCTCACGTGAA 59.126 50.000 20.49 5.99 0.00 3.18
118 119 0.955428 GGCTTTGGATGCTCACGTGA 60.955 55.000 18.88 18.88 0.00 4.35
119 120 1.236616 TGGCTTTGGATGCTCACGTG 61.237 55.000 9.94 9.94 0.00 4.49
120 121 0.537143 TTGGCTTTGGATGCTCACGT 60.537 50.000 0.00 0.00 0.00 4.49
121 122 0.813184 ATTGGCTTTGGATGCTCACG 59.187 50.000 0.00 0.00 0.00 4.35
122 123 3.323751 AAATTGGCTTTGGATGCTCAC 57.676 42.857 0.00 0.00 0.00 3.51
123 124 3.666274 CAAAATTGGCTTTGGATGCTCA 58.334 40.909 0.00 0.00 33.48 4.26
124 125 2.417586 GCAAAATTGGCTTTGGATGCTC 59.582 45.455 0.69 0.00 36.89 4.26
125 126 2.039348 AGCAAAATTGGCTTTGGATGCT 59.961 40.909 0.00 0.00 38.81 3.79
126 127 2.160813 CAGCAAAATTGGCTTTGGATGC 59.839 45.455 0.00 0.00 40.23 3.91
127 128 2.745281 CCAGCAAAATTGGCTTTGGATG 59.255 45.455 0.00 0.00 40.23 3.51
128 129 2.372837 ACCAGCAAAATTGGCTTTGGAT 59.627 40.909 7.53 0.00 40.23 3.41
129 130 1.767681 ACCAGCAAAATTGGCTTTGGA 59.232 42.857 7.53 0.00 40.23 3.53
130 131 2.259266 ACCAGCAAAATTGGCTTTGG 57.741 45.000 0.00 0.00 40.23 3.28
131 132 2.730928 CGTACCAGCAAAATTGGCTTTG 59.269 45.455 0.00 0.00 40.23 2.77
132 133 2.364002 ACGTACCAGCAAAATTGGCTTT 59.636 40.909 0.00 0.00 40.23 3.51
133 134 1.960689 ACGTACCAGCAAAATTGGCTT 59.039 42.857 0.00 0.00 40.23 4.35
134 135 1.616159 ACGTACCAGCAAAATTGGCT 58.384 45.000 0.00 0.00 43.77 4.75
135 136 3.562567 TTACGTACCAGCAAAATTGGC 57.437 42.857 0.00 0.00 39.39 4.52
136 137 3.917985 GCTTTACGTACCAGCAAAATTGG 59.082 43.478 17.41 0.00 41.60 3.16
137 138 4.794169 AGCTTTACGTACCAGCAAAATTG 58.206 39.130 22.14 0.00 35.88 2.32
138 139 4.378046 CGAGCTTTACGTACCAGCAAAATT 60.378 41.667 22.14 6.55 35.88 1.82
139 140 3.124636 CGAGCTTTACGTACCAGCAAAAT 59.875 43.478 22.14 6.85 35.88 1.82
140 141 2.477375 CGAGCTTTACGTACCAGCAAAA 59.523 45.455 22.14 3.51 35.88 2.44
141 142 2.063266 CGAGCTTTACGTACCAGCAAA 58.937 47.619 22.14 4.15 35.88 3.68
142 143 1.270274 TCGAGCTTTACGTACCAGCAA 59.730 47.619 22.14 9.11 35.88 3.91
143 144 0.883153 TCGAGCTTTACGTACCAGCA 59.117 50.000 22.14 5.01 35.88 4.41
144 145 1.266466 GTCGAGCTTTACGTACCAGC 58.734 55.000 15.36 15.36 0.00 4.85
145 146 1.792993 CGGTCGAGCTTTACGTACCAG 60.793 57.143 13.48 0.00 33.84 4.00
146 147 0.168788 CGGTCGAGCTTTACGTACCA 59.831 55.000 13.48 0.00 33.84 3.25
147 148 1.136285 GCGGTCGAGCTTTACGTACC 61.136 60.000 13.48 0.00 0.00 3.34
148 149 1.136285 GGCGGTCGAGCTTTACGTAC 61.136 60.000 13.48 0.00 37.29 3.67
149 150 1.137404 GGCGGTCGAGCTTTACGTA 59.863 57.895 13.48 0.00 37.29 3.57
150 151 2.126189 GGCGGTCGAGCTTTACGT 60.126 61.111 13.48 0.00 37.29 3.57
151 152 2.884207 GGGCGGTCGAGCTTTACG 60.884 66.667 13.48 0.00 37.29 3.18
152 153 1.810030 CAGGGCGGTCGAGCTTTAC 60.810 63.158 13.48 0.38 37.29 2.01
153 154 2.577059 CAGGGCGGTCGAGCTTTA 59.423 61.111 13.48 0.00 37.29 1.85
154 155 4.394712 CCAGGGCGGTCGAGCTTT 62.395 66.667 13.48 0.00 37.29 3.51
192 193 4.100084 TCCAGGTCATGCGGCCAG 62.100 66.667 2.24 0.00 0.00 4.85
193 194 4.408821 GTCCAGGTCATGCGGCCA 62.409 66.667 2.24 0.00 0.00 5.36
197 198 4.758251 TGCCGTCCAGGTCATGCG 62.758 66.667 0.00 0.00 43.70 4.73
198 199 2.359850 TTGCCGTCCAGGTCATGC 60.360 61.111 0.00 0.00 43.70 4.06
199 200 2.401766 GCTTGCCGTCCAGGTCATG 61.402 63.158 0.00 0.00 43.70 3.07
200 201 2.045926 GCTTGCCGTCCAGGTCAT 60.046 61.111 0.00 0.00 43.70 3.06
201 202 2.894257 ATGCTTGCCGTCCAGGTCA 61.894 57.895 0.00 0.00 43.70 4.02
202 203 2.045926 ATGCTTGCCGTCCAGGTC 60.046 61.111 0.00 0.00 43.70 3.85
203 204 2.360350 CATGCTTGCCGTCCAGGT 60.360 61.111 0.00 0.00 43.70 4.00
204 205 3.136123 CCATGCTTGCCGTCCAGG 61.136 66.667 0.00 0.00 44.97 4.45
205 206 3.818787 GCCATGCTTGCCGTCCAG 61.819 66.667 0.00 0.00 0.00 3.86
208 209 3.386867 CTTCGCCATGCTTGCCGTC 62.387 63.158 2.88 0.00 0.00 4.79
209 210 3.434319 CTTCGCCATGCTTGCCGT 61.434 61.111 2.88 0.00 0.00 5.68
210 211 4.183686 CCTTCGCCATGCTTGCCG 62.184 66.667 0.00 0.00 0.00 5.69
211 212 4.503314 GCCTTCGCCATGCTTGCC 62.503 66.667 0.00 0.00 0.00 4.52
237 238 4.415150 ATGGTGGCCTGGCTCACG 62.415 66.667 24.32 0.00 33.06 4.35
238 239 2.753043 CATGGTGGCCTGGCTCAC 60.753 66.667 23.71 23.71 0.00 3.51
239 240 4.051167 CCATGGTGGCCTGGCTCA 62.051 66.667 19.68 14.56 0.00 4.26
248 249 2.607411 TACATGCTCGGCCATGGTGG 62.607 60.000 14.67 5.69 45.29 4.61
249 250 1.153188 TACATGCTCGGCCATGGTG 60.153 57.895 14.67 6.70 45.29 4.17
250 251 1.153168 GTACATGCTCGGCCATGGT 60.153 57.895 14.67 0.00 45.29 3.55
251 252 1.153188 TGTACATGCTCGGCCATGG 60.153 57.895 7.63 7.63 45.29 3.66
252 253 0.744057 TGTGTACATGCTCGGCCATG 60.744 55.000 2.24 12.61 46.19 3.66
253 254 0.035534 TTGTGTACATGCTCGGCCAT 60.036 50.000 2.24 0.00 0.00 4.40
254 255 0.953471 GTTGTGTACATGCTCGGCCA 60.953 55.000 2.24 0.00 0.00 5.36
255 256 0.953471 TGTTGTGTACATGCTCGGCC 60.953 55.000 0.00 0.00 0.00 6.13
256 257 1.086696 ATGTTGTGTACATGCTCGGC 58.913 50.000 0.00 0.00 45.71 5.54
257 258 3.258228 TGTATGTTGTGTACATGCTCGG 58.742 45.455 0.00 0.00 46.81 4.63
258 259 3.926527 ACTGTATGTTGTGTACATGCTCG 59.073 43.478 0.00 2.49 46.81 5.03
259 260 4.436050 GCACTGTATGTTGTGTACATGCTC 60.436 45.833 0.00 0.00 46.81 4.26
260 261 3.436704 GCACTGTATGTTGTGTACATGCT 59.563 43.478 0.00 0.00 46.81 3.79
261 262 3.426159 GGCACTGTATGTTGTGTACATGC 60.426 47.826 0.00 0.06 46.81 4.06
262 263 3.750652 TGGCACTGTATGTTGTGTACATG 59.249 43.478 0.00 0.00 46.81 3.21
264 265 3.477210 TGGCACTGTATGTTGTGTACA 57.523 42.857 0.00 0.00 41.97 2.90
265 266 3.062099 CGATGGCACTGTATGTTGTGTAC 59.938 47.826 0.00 0.00 36.63 2.90
266 267 3.258228 CGATGGCACTGTATGTTGTGTA 58.742 45.455 0.00 0.00 36.63 2.90
267 268 2.076100 CGATGGCACTGTATGTTGTGT 58.924 47.619 0.00 0.00 36.63 3.72
268 269 1.202065 GCGATGGCACTGTATGTTGTG 60.202 52.381 0.00 0.00 39.62 3.33
269 270 1.086696 GCGATGGCACTGTATGTTGT 58.913 50.000 0.00 0.00 39.62 3.32
270 271 1.063027 CAGCGATGGCACTGTATGTTG 59.937 52.381 1.50 0.00 43.41 3.33
271 272 1.339055 ACAGCGATGGCACTGTATGTT 60.339 47.619 5.32 0.00 45.09 2.71
272 273 0.250234 ACAGCGATGGCACTGTATGT 59.750 50.000 5.32 2.14 45.09 2.29
273 274 1.328680 GAACAGCGATGGCACTGTATG 59.671 52.381 5.32 2.58 46.17 2.39
274 275 1.656652 GAACAGCGATGGCACTGTAT 58.343 50.000 5.32 1.63 46.17 2.29
275 276 0.735978 CGAACAGCGATGGCACTGTA 60.736 55.000 5.32 0.00 46.17 2.74
277 278 2.029288 ACGAACAGCGATGGCACTG 61.029 57.895 5.32 2.35 44.57 3.66
278 279 2.029288 CACGAACAGCGATGGCACT 61.029 57.895 5.32 0.00 44.57 4.40
279 280 2.476051 CACGAACAGCGATGGCAC 59.524 61.111 5.32 0.00 44.57 5.01
280 281 2.741985 CCACGAACAGCGATGGCA 60.742 61.111 5.32 0.00 44.57 4.92
281 282 2.742372 ACCACGAACAGCGATGGC 60.742 61.111 5.32 0.00 44.57 4.40
282 283 1.667830 ACACCACGAACAGCGATGG 60.668 57.895 5.32 0.00 44.57 3.51
283 284 1.492873 CACACCACGAACAGCGATG 59.507 57.895 0.00 0.00 44.57 3.84
284 285 1.667830 CCACACCACGAACAGCGAT 60.668 57.895 0.00 0.00 44.57 4.58
285 286 2.279851 CCACACCACGAACAGCGA 60.280 61.111 0.00 0.00 44.57 4.93
287 288 2.896801 CTGCCACACCACGAACAGC 61.897 63.158 0.00 0.00 0.00 4.40
288 289 1.498865 GACTGCCACACCACGAACAG 61.499 60.000 0.00 0.00 0.00 3.16
289 290 1.522806 GACTGCCACACCACGAACA 60.523 57.895 0.00 0.00 0.00 3.18
290 291 0.032952 TAGACTGCCACACCACGAAC 59.967 55.000 0.00 0.00 0.00 3.95
291 292 0.317160 CTAGACTGCCACACCACGAA 59.683 55.000 0.00 0.00 0.00 3.85
292 293 1.964448 CTAGACTGCCACACCACGA 59.036 57.895 0.00 0.00 0.00 4.35
293 294 1.738099 GCTAGACTGCCACACCACG 60.738 63.158 0.00 0.00 0.00 4.94
294 295 4.285851 GCTAGACTGCCACACCAC 57.714 61.111 0.00 0.00 0.00 4.16
302 303 1.068250 GTCATCCGGGCTAGACTGC 59.932 63.158 0.00 0.00 0.00 4.40
303 304 1.360551 CGTCATCCGGGCTAGACTG 59.639 63.158 0.00 0.00 0.00 3.51
304 305 1.076923 ACGTCATCCGGGCTAGACT 60.077 57.895 0.00 0.00 42.24 3.24
305 306 1.102222 AGACGTCATCCGGGCTAGAC 61.102 60.000 19.50 4.00 42.24 2.59
306 307 0.818445 GAGACGTCATCCGGGCTAGA 60.818 60.000 19.50 0.00 42.24 2.43
307 308 1.101635 TGAGACGTCATCCGGGCTAG 61.102 60.000 19.50 0.00 42.24 3.42
308 309 0.467474 ATGAGACGTCATCCGGGCTA 60.467 55.000 19.50 0.00 39.37 3.93
309 310 1.758514 ATGAGACGTCATCCGGGCT 60.759 57.895 19.50 0.00 39.37 5.19
310 311 1.592669 CATGAGACGTCATCCGGGC 60.593 63.158 19.50 0.00 41.85 6.13
311 312 0.175760 AACATGAGACGTCATCCGGG 59.824 55.000 19.50 4.44 41.85 5.73
312 313 2.010145 AAACATGAGACGTCATCCGG 57.990 50.000 19.50 0.00 41.85 5.14
313 314 4.625742 ACTAAAAACATGAGACGTCATCCG 59.374 41.667 19.50 5.93 41.85 4.18
314 315 6.481954 AACTAAAAACATGAGACGTCATCC 57.518 37.500 19.50 6.99 41.85 3.51
315 316 9.872757 TTTTAACTAAAAACATGAGACGTCATC 57.127 29.630 19.50 12.61 35.30 2.92
344 345 2.349155 GGTTTTCATCCGACGTGAACAC 60.349 50.000 0.00 8.28 36.20 3.32
345 346 1.868498 GGTTTTCATCCGACGTGAACA 59.132 47.619 0.00 0.00 35.47 3.18
346 347 1.868498 TGGTTTTCATCCGACGTGAAC 59.132 47.619 0.00 0.00 35.47 3.18
347 348 1.868498 GTGGTTTTCATCCGACGTGAA 59.132 47.619 0.00 0.00 34.01 3.18
348 349 1.202545 TGTGGTTTTCATCCGACGTGA 60.203 47.619 0.00 0.00 0.00 4.35
349 350 1.222300 TGTGGTTTTCATCCGACGTG 58.778 50.000 0.00 0.00 0.00 4.49
350 351 1.956297 TTGTGGTTTTCATCCGACGT 58.044 45.000 0.00 0.00 0.00 4.34
351 352 3.341857 TTTTGTGGTTTTCATCCGACG 57.658 42.857 0.00 0.00 0.00 5.12
352 353 4.502645 CACTTTTTGTGGTTTTCATCCGAC 59.497 41.667 0.00 0.00 42.68 4.79
353 354 4.677584 CACTTTTTGTGGTTTTCATCCGA 58.322 39.130 0.00 0.00 42.68 4.55
365 366 5.106442 GGTCCTTTTGTACCACTTTTTGTG 58.894 41.667 0.00 0.00 45.80 3.33
366 367 4.142337 CGGTCCTTTTGTACCACTTTTTGT 60.142 41.667 0.00 0.00 35.35 2.83
367 368 4.096682 TCGGTCCTTTTGTACCACTTTTTG 59.903 41.667 0.00 0.00 35.35 2.44
368 369 4.271661 TCGGTCCTTTTGTACCACTTTTT 58.728 39.130 0.00 0.00 35.35 1.94
369 370 3.888583 TCGGTCCTTTTGTACCACTTTT 58.111 40.909 0.00 0.00 35.35 2.27
370 371 3.564053 TCGGTCCTTTTGTACCACTTT 57.436 42.857 0.00 0.00 35.35 2.66
371 372 3.326880 AGATCGGTCCTTTTGTACCACTT 59.673 43.478 0.00 0.00 35.35 3.16
372 373 2.904434 AGATCGGTCCTTTTGTACCACT 59.096 45.455 0.00 0.00 35.35 4.00
373 374 3.329929 AGATCGGTCCTTTTGTACCAC 57.670 47.619 0.00 0.00 35.35 4.16
374 375 5.395990 GGATAAGATCGGTCCTTTTGTACCA 60.396 44.000 0.00 0.00 35.35 3.25
375 376 5.055144 GGATAAGATCGGTCCTTTTGTACC 58.945 45.833 0.00 0.00 0.00 3.34
376 377 5.055144 GGGATAAGATCGGTCCTTTTGTAC 58.945 45.833 11.98 0.00 32.55 2.90
377 378 4.202182 CGGGATAAGATCGGTCCTTTTGTA 60.202 45.833 11.98 0.00 32.55 2.41
378 379 3.431766 CGGGATAAGATCGGTCCTTTTGT 60.432 47.826 11.98 0.00 32.55 2.83
379 380 3.131396 CGGGATAAGATCGGTCCTTTTG 58.869 50.000 11.98 0.64 32.55 2.44
380 381 2.104281 CCGGGATAAGATCGGTCCTTTT 59.896 50.000 11.98 0.00 39.04 2.27
381 382 1.692519 CCGGGATAAGATCGGTCCTTT 59.307 52.381 11.98 0.00 39.04 3.11
382 383 1.339097 CCGGGATAAGATCGGTCCTT 58.661 55.000 11.98 0.00 39.04 3.36
383 384 3.053146 CCGGGATAAGATCGGTCCT 57.947 57.895 11.98 0.00 39.04 3.85
388 389 3.573110 ACTCCTTAACCGGGATAAGATCG 59.427 47.826 21.69 12.94 33.16 3.69
389 390 5.070047 TCAACTCCTTAACCGGGATAAGATC 59.930 44.000 21.69 0.00 33.16 2.75
390 391 4.966805 TCAACTCCTTAACCGGGATAAGAT 59.033 41.667 21.69 7.40 33.16 2.40
391 392 4.355549 TCAACTCCTTAACCGGGATAAGA 58.644 43.478 21.69 9.70 33.16 2.10
392 393 4.443034 CCTCAACTCCTTAACCGGGATAAG 60.443 50.000 15.14 15.14 31.89 1.73
393 394 3.453353 CCTCAACTCCTTAACCGGGATAA 59.547 47.826 6.32 3.93 31.89 1.75
394 395 3.036091 CCTCAACTCCTTAACCGGGATA 58.964 50.000 6.32 0.00 31.89 2.59
395 396 1.838077 CCTCAACTCCTTAACCGGGAT 59.162 52.381 6.32 0.00 31.89 3.85
396 397 1.203212 TCCTCAACTCCTTAACCGGGA 60.203 52.381 6.32 0.00 0.00 5.14
397 398 1.272807 TCCTCAACTCCTTAACCGGG 58.727 55.000 6.32 0.00 0.00 5.73
398 399 2.614734 GGTTCCTCAACTCCTTAACCGG 60.615 54.545 0.00 0.00 32.50 5.28
399 400 2.038033 TGGTTCCTCAACTCCTTAACCG 59.962 50.000 0.00 0.00 39.36 4.44
400 401 3.782656 TGGTTCCTCAACTCCTTAACC 57.217 47.619 0.00 0.00 37.48 2.85
401 402 4.072839 CCTTGGTTCCTCAACTCCTTAAC 58.927 47.826 0.00 0.00 32.50 2.01
402 403 3.720002 ACCTTGGTTCCTCAACTCCTTAA 59.280 43.478 0.00 0.00 32.50 1.85
403 404 3.323775 ACCTTGGTTCCTCAACTCCTTA 58.676 45.455 0.00 0.00 32.50 2.69
404 405 2.136026 ACCTTGGTTCCTCAACTCCTT 58.864 47.619 0.00 0.00 32.50 3.36
405 406 1.821088 ACCTTGGTTCCTCAACTCCT 58.179 50.000 0.00 0.00 32.50 3.69
406 407 2.623416 CAAACCTTGGTTCCTCAACTCC 59.377 50.000 5.43 0.00 32.50 3.85
407 408 2.034685 GCAAACCTTGGTTCCTCAACTC 59.965 50.000 5.43 0.00 32.50 3.01
408 409 2.031870 GCAAACCTTGGTTCCTCAACT 58.968 47.619 5.43 0.00 32.50 3.16
409 410 1.068588 GGCAAACCTTGGTTCCTCAAC 59.931 52.381 5.43 0.00 0.00 3.18
410 411 1.408969 GGCAAACCTTGGTTCCTCAA 58.591 50.000 5.43 0.00 0.00 3.02
411 412 0.821711 CGGCAAACCTTGGTTCCTCA 60.822 55.000 5.43 0.00 0.00 3.86
412 413 1.524008 CCGGCAAACCTTGGTTCCTC 61.524 60.000 5.43 0.00 0.00 3.71
413 414 1.530655 CCGGCAAACCTTGGTTCCT 60.531 57.895 5.43 0.00 0.00 3.36
414 415 1.396607 AACCGGCAAACCTTGGTTCC 61.397 55.000 0.00 3.15 40.60 3.62
415 416 0.462375 AAACCGGCAAACCTTGGTTC 59.538 50.000 0.00 0.00 43.64 3.62
416 417 0.906066 AAAACCGGCAAACCTTGGTT 59.094 45.000 0.00 0.00 46.26 3.67
417 418 0.176910 CAAAACCGGCAAACCTTGGT 59.823 50.000 0.00 0.00 35.90 3.67
418 419 0.461961 TCAAAACCGGCAAACCTTGG 59.538 50.000 0.00 0.00 0.00 3.61
419 420 2.200899 CTTCAAAACCGGCAAACCTTG 58.799 47.619 0.00 0.00 0.00 3.61
420 421 1.828595 ACTTCAAAACCGGCAAACCTT 59.171 42.857 0.00 0.00 0.00 3.50
421 422 1.480789 ACTTCAAAACCGGCAAACCT 58.519 45.000 0.00 0.00 0.00 3.50
422 423 1.930503 CAACTTCAAAACCGGCAAACC 59.069 47.619 0.00 0.00 0.00 3.27
423 424 2.882324 TCAACTTCAAAACCGGCAAAC 58.118 42.857 0.00 0.00 0.00 2.93
424 425 3.516615 CTTCAACTTCAAAACCGGCAAA 58.483 40.909 0.00 0.00 0.00 3.68
425 426 2.159170 CCTTCAACTTCAAAACCGGCAA 60.159 45.455 0.00 0.00 0.00 4.52
426 427 1.407258 CCTTCAACTTCAAAACCGGCA 59.593 47.619 0.00 0.00 0.00 5.69
427 428 1.679153 TCCTTCAACTTCAAAACCGGC 59.321 47.619 0.00 0.00 0.00 6.13
428 429 5.240844 ACTTATCCTTCAACTTCAAAACCGG 59.759 40.000 0.00 0.00 0.00 5.28
429 430 6.313744 ACTTATCCTTCAACTTCAAAACCG 57.686 37.500 0.00 0.00 0.00 4.44
430 431 7.941919 AGAACTTATCCTTCAACTTCAAAACC 58.058 34.615 0.00 0.00 0.00 3.27
450 451 9.372369 CCTCAACTCTTTCGAAAATATAGAACT 57.628 33.333 12.41 0.00 0.00 3.01
451 452 8.604890 CCCTCAACTCTTTCGAAAATATAGAAC 58.395 37.037 12.41 0.00 0.00 3.01
452 453 8.537016 TCCCTCAACTCTTTCGAAAATATAGAA 58.463 33.333 12.41 0.00 0.00 2.10
453 454 7.980099 GTCCCTCAACTCTTTCGAAAATATAGA 59.020 37.037 12.41 4.22 0.00 1.98
454 455 7.043325 CGTCCCTCAACTCTTTCGAAAATATAG 60.043 40.741 12.41 9.35 0.00 1.31
455 456 6.755141 CGTCCCTCAACTCTTTCGAAAATATA 59.245 38.462 12.41 0.00 0.00 0.86
456 457 5.581085 CGTCCCTCAACTCTTTCGAAAATAT 59.419 40.000 12.41 0.00 0.00 1.28
457 458 4.927425 CGTCCCTCAACTCTTTCGAAAATA 59.073 41.667 12.41 2.35 0.00 1.40
458 459 3.746492 CGTCCCTCAACTCTTTCGAAAAT 59.254 43.478 12.41 0.00 0.00 1.82
459 460 3.128349 CGTCCCTCAACTCTTTCGAAAA 58.872 45.455 12.41 2.66 0.00 2.29
460 461 2.363038 TCGTCCCTCAACTCTTTCGAAA 59.637 45.455 10.71 10.71 0.00 3.46
461 462 1.958579 TCGTCCCTCAACTCTTTCGAA 59.041 47.619 0.00 0.00 0.00 3.71
462 463 1.612676 TCGTCCCTCAACTCTTTCGA 58.387 50.000 0.00 0.00 0.00 3.71
463 464 2.433868 TTCGTCCCTCAACTCTTTCG 57.566 50.000 0.00 0.00 0.00 3.46
464 465 5.690997 ATTTTTCGTCCCTCAACTCTTTC 57.309 39.130 0.00 0.00 0.00 2.62
465 466 8.101419 AGTATATTTTTCGTCCCTCAACTCTTT 58.899 33.333 0.00 0.00 0.00 2.52
466 467 7.621796 AGTATATTTTTCGTCCCTCAACTCTT 58.378 34.615 0.00 0.00 0.00 2.85
467 468 7.184067 AGTATATTTTTCGTCCCTCAACTCT 57.816 36.000 0.00 0.00 0.00 3.24
468 469 7.764901 AGAAGTATATTTTTCGTCCCTCAACTC 59.235 37.037 0.00 0.00 0.00 3.01
469 470 7.621796 AGAAGTATATTTTTCGTCCCTCAACT 58.378 34.615 0.00 0.00 0.00 3.16
470 471 7.011202 GGAGAAGTATATTTTTCGTCCCTCAAC 59.989 40.741 0.00 0.00 0.00 3.18
471 472 7.046033 GGAGAAGTATATTTTTCGTCCCTCAA 58.954 38.462 0.00 0.00 0.00 3.02
472 473 6.407752 GGGAGAAGTATATTTTTCGTCCCTCA 60.408 42.308 17.60 0.00 37.56 3.86
473 474 5.990386 GGGAGAAGTATATTTTTCGTCCCTC 59.010 44.000 17.60 0.00 37.56 4.30
474 475 5.666265 AGGGAGAAGTATATTTTTCGTCCCT 59.334 40.000 19.54 19.54 41.31 4.20
475 476 5.926663 AGGGAGAAGTATATTTTTCGTCCC 58.073 41.667 17.41 17.41 39.03 4.46
476 477 9.857957 CTATAGGGAGAAGTATATTTTTCGTCC 57.142 37.037 0.00 0.00 0.00 4.79
489 490 9.716556 TTGTCTTCTAATTCTATAGGGAGAAGT 57.283 33.333 20.81 7.19 40.39 3.01
491 492 9.148879 CCTTGTCTTCTAATTCTATAGGGAGAA 57.851 37.037 0.00 3.72 39.71 2.87
492 493 8.511969 TCCTTGTCTTCTAATTCTATAGGGAGA 58.488 37.037 0.00 0.00 0.00 3.71
493 494 8.713708 TCCTTGTCTTCTAATTCTATAGGGAG 57.286 38.462 0.00 0.00 0.00 4.30
494 495 9.676129 AATCCTTGTCTTCTAATTCTATAGGGA 57.324 33.333 0.00 0.00 0.00 4.20
564 565 6.229936 TGGTACTTTAGCCGATAATCACTT 57.770 37.500 0.00 0.00 0.00 3.16
568 569 7.907214 AATCATGGTACTTTAGCCGATAATC 57.093 36.000 0.00 0.00 0.00 1.75
570 571 8.590204 TGATAATCATGGTACTTTAGCCGATAA 58.410 33.333 0.00 0.00 0.00 1.75
598 599 7.035004 GCTGCTGGACATAATTGTTTTATTCA 58.965 34.615 0.00 0.00 35.79 2.57
606 607 5.829391 TGATAATGCTGCTGGACATAATTGT 59.171 36.000 0.00 0.00 39.32 2.71
607 608 6.321848 TGATAATGCTGCTGGACATAATTG 57.678 37.500 0.00 0.00 0.00 2.32
608 609 7.534723 AATGATAATGCTGCTGGACATAATT 57.465 32.000 0.00 0.00 0.00 1.40
620 621 9.797556 CATTGGGTAATCATAATGATAATGCTG 57.202 33.333 0.00 0.00 35.76 4.41
634 635 6.126863 ACAAGTCTCTTCATTGGGTAATCA 57.873 37.500 0.00 0.00 0.00 2.57
682 1621 9.994432 AAAAAGATATTGTATTCTTCGCTGAAG 57.006 29.630 10.75 10.75 40.65 3.02
793 1732 3.942115 GGGCAAAACTAGAATCAGAGACC 59.058 47.826 0.00 0.00 0.00 3.85
795 1734 3.369471 CGGGGCAAAACTAGAATCAGAGA 60.369 47.826 0.00 0.00 0.00 3.10
797 1736 2.355716 CCGGGGCAAAACTAGAATCAGA 60.356 50.000 0.00 0.00 0.00 3.27
968 1914 1.202330 CTCCTCCTGTGCAGAATCCT 58.798 55.000 0.02 0.00 0.00 3.24
997 1943 4.453819 GTCAAGGAAGAGAAACTCCATGTG 59.546 45.833 0.00 0.00 0.00 3.21
1333 2345 1.684983 GACGGTTATACAGGCTAGCCA 59.315 52.381 34.70 15.89 38.92 4.75
1338 2350 1.191535 TGCAGACGGTTATACAGGCT 58.808 50.000 0.00 0.00 29.44 4.58
1339 2351 1.867233 CATGCAGACGGTTATACAGGC 59.133 52.381 0.00 0.00 0.00 4.85
1404 2712 6.259167 TCCATATTCGTTGTTTACTGGTATGC 59.741 38.462 0.00 0.00 0.00 3.14
1408 2716 6.882140 TGAATCCATATTCGTTGTTTACTGGT 59.118 34.615 0.00 0.00 43.84 4.00
1466 3939 5.414454 GCAAAATACAGTGATCCCTGTTGTA 59.586 40.000 16.25 0.00 42.99 2.41
1499 3972 6.207810 GTCCCACCATTTGTACAAAGTTGATA 59.792 38.462 24.22 10.41 33.32 2.15
1571 4049 9.321562 CCCAGTGAGTTAAACGTTATAATACAT 57.678 33.333 0.00 0.00 0.00 2.29
1572 4050 8.530311 TCCCAGTGAGTTAAACGTTATAATACA 58.470 33.333 0.00 5.13 0.00 2.29
1573 4051 8.931385 TCCCAGTGAGTTAAACGTTATAATAC 57.069 34.615 0.00 0.00 0.00 1.89
1579 4057 6.839124 TCTATCCCAGTGAGTTAAACGTTA 57.161 37.500 0.00 0.00 0.00 3.18
1608 4088 6.248433 TCATCAGAATAAACAGCCCTTCTTT 58.752 36.000 0.00 0.00 0.00 2.52
1650 4141 2.658325 CGCTGCAGTGAATAAGCAAAAC 59.342 45.455 22.94 0.00 37.89 2.43
1664 4159 2.125753 GAGGGACAGACGCTGCAG 60.126 66.667 10.11 10.11 41.84 4.41
1707 4217 7.518188 AGTCTTCTAACCCAAATTCTTCTTCA 58.482 34.615 0.00 0.00 0.00 3.02
1713 4223 5.221925 TGCAGAGTCTTCTAACCCAAATTCT 60.222 40.000 0.00 0.00 30.73 2.40
1723 4233 7.233389 AGAGTATGTTTGCAGAGTCTTCTAA 57.767 36.000 0.00 0.00 42.14 2.10
1743 4253 2.294074 GAGACTATGCTGACGGAGAGT 58.706 52.381 0.00 0.00 35.65 3.24
1776 4286 3.620488 GCCATAGACATTGACTGGGAAA 58.380 45.455 11.00 0.00 0.00 3.13
1835 4345 5.066634 TCTCTACTGCGGTGAAAGAGATAAG 59.933 44.000 18.68 1.18 38.17 1.73
1853 4363 2.131183 GACGCTGGCAATCATCTCTAC 58.869 52.381 0.00 0.00 0.00 2.59
1926 4443 8.501580 ACAGTTGATATTAAATGCATCATCGAG 58.498 33.333 0.00 0.00 0.00 4.04
1970 4493 5.658634 AGCACTAAGATGACTCCTGTTCATA 59.341 40.000 0.00 0.00 0.00 2.15
1971 4494 4.469227 AGCACTAAGATGACTCCTGTTCAT 59.531 41.667 0.00 0.00 0.00 2.57
1972 4495 3.834813 AGCACTAAGATGACTCCTGTTCA 59.165 43.478 0.00 0.00 0.00 3.18
1973 4496 4.464069 AGCACTAAGATGACTCCTGTTC 57.536 45.455 0.00 0.00 0.00 3.18
1974 4497 4.040952 ACAAGCACTAAGATGACTCCTGTT 59.959 41.667 0.00 0.00 0.00 3.16
1975 4498 3.580458 ACAAGCACTAAGATGACTCCTGT 59.420 43.478 0.00 0.00 0.00 4.00
1976 4499 3.931468 CACAAGCACTAAGATGACTCCTG 59.069 47.826 0.00 0.00 0.00 3.86
1977 4500 3.834813 TCACAAGCACTAAGATGACTCCT 59.165 43.478 0.00 0.00 0.00 3.69
1978 4501 4.193826 TCACAAGCACTAAGATGACTCC 57.806 45.455 0.00 0.00 0.00 3.85
1995 4518 4.219725 TGGATCGACAATCACTACTTCACA 59.780 41.667 0.00 0.00 35.96 3.58
1996 4519 4.744570 TGGATCGACAATCACTACTTCAC 58.255 43.478 0.00 0.00 35.96 3.18
1997 4520 4.705023 TCTGGATCGACAATCACTACTTCA 59.295 41.667 0.00 0.00 35.96 3.02
1998 4521 5.250235 TCTGGATCGACAATCACTACTTC 57.750 43.478 0.00 0.00 35.96 3.01
1999 4522 5.860941 ATCTGGATCGACAATCACTACTT 57.139 39.130 0.00 0.00 35.96 2.24
2000 4523 6.065374 ACTATCTGGATCGACAATCACTACT 58.935 40.000 0.00 0.00 35.96 2.57
2001 4524 6.017026 TGACTATCTGGATCGACAATCACTAC 60.017 42.308 0.00 0.00 35.96 2.73
2002 4525 6.062095 TGACTATCTGGATCGACAATCACTA 58.938 40.000 0.00 0.00 35.96 2.74
2003 4526 4.889995 TGACTATCTGGATCGACAATCACT 59.110 41.667 0.00 0.00 35.96 3.41
2032 4555 8.621532 TGCCATAAAAGCTACTCCATTTATAG 57.378 34.615 0.00 0.00 0.00 1.31
2066 4596 6.913170 TCCAAATACTGCTCAAAATGAAGAC 58.087 36.000 0.00 0.00 0.00 3.01
2112 4642 4.513442 TCCATCCTACGAAAAGAATGGTG 58.487 43.478 0.00 0.00 0.00 4.17
2113 4643 4.837093 TCCATCCTACGAAAAGAATGGT 57.163 40.909 0.00 0.00 0.00 3.55
2115 4645 5.297776 AGCATTCCATCCTACGAAAAGAATG 59.702 40.000 0.00 0.00 41.14 2.67
2125 4655 7.420800 CAGTTAAAATCAGCATTCCATCCTAC 58.579 38.462 0.00 0.00 0.00 3.18
2226 4756 2.715046 TGCTAAATGGCTTGTCTGGAG 58.285 47.619 0.00 0.00 0.00 3.86
2235 4768 4.526438 ATTAGACCCTTGCTAAATGGCT 57.474 40.909 0.00 0.00 32.16 4.75
2259 4792 3.898123 AGACAGTACTCGGCCATCAATAT 59.102 43.478 2.24 0.00 0.00 1.28
2370 4903 1.811965 TGATTTCAATGGTGCACTCGG 59.188 47.619 17.98 4.45 0.00 4.63
2448 4981 2.362077 GTTTGTTCCATGTCCAGCTTGT 59.638 45.455 0.00 0.00 0.00 3.16
2504 5037 9.167311 GATAACTCCACTTTCATCACTTGTAAT 57.833 33.333 0.00 0.00 0.00 1.89
2536 5069 1.917273 TAGTAATGACACTTCGCCGC 58.083 50.000 0.00 0.00 0.00 6.53
2572 5105 7.602265 GCCACATTATTGATTTAAAACACCACT 59.398 33.333 0.00 0.00 0.00 4.00
2735 5283 6.154445 TCAGAACTAAGTTTACTAAGCCACG 58.846 40.000 0.00 0.00 0.00 4.94
3112 5807 7.977789 TGTGCATCAGAAGTTAGTTCATAAA 57.022 32.000 2.45 0.00 37.67 1.40
3115 5810 6.000219 AGTTGTGCATCAGAAGTTAGTTCAT 59.000 36.000 2.45 0.00 37.67 2.57
3155 5850 2.266279 AGGTGCCTCCTGCTTTACTAA 58.734 47.619 0.00 0.00 46.19 2.24
3232 5937 4.098894 ACATGGATCCAAAAATGAAGCCT 58.901 39.130 20.67 0.00 0.00 4.58
3245 5950 1.838112 TGAACAGGCAACATGGATCC 58.162 50.000 4.20 4.20 41.41 3.36
3317 6026 1.532868 GGCATGGTGTCTTATGATCGC 59.467 52.381 0.00 0.00 0.00 4.58
3323 6032 0.464373 CTGGCGGCATGGTGTCTTAT 60.464 55.000 13.85 0.00 0.00 1.73
3485 7842 9.451002 TGATTTAGTGGGAAAATAAACGTATGA 57.549 29.630 0.00 0.00 0.00 2.15


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.