Multiple sequence alignment - TraesCS1A01G026900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G026900 chr1A 100.000 2640 0 0 1 2640 12735898 12733259 0 4876
1 TraesCS1A01G026900 chr1A 96.316 2280 81 3 362 2640 259835137 259832860 0 3742
2 TraesCS1A01G026900 chr4A 96.670 2282 71 5 362 2640 512271410 512269131 0 3788
3 TraesCS1A01G026900 chr7B 96.455 2285 73 6 362 2640 542964071 542961789 0 3764
4 TraesCS1A01G026900 chr6A 96.407 2282 78 4 362 2640 269426388 269424108 0 3757
5 TraesCS1A01G026900 chr6A 96.235 2284 77 7 362 2640 114615700 114613421 0 3733
6 TraesCS1A01G026900 chr7A 96.363 2282 77 6 362 2640 642773770 642776048 0 3749
7 TraesCS1A01G026900 chr7A 96.321 2283 80 4 362 2640 96441689 96443971 0 3747
8 TraesCS1A01G026900 chr5A 96.274 2281 83 2 362 2640 280102570 280100290 0 3740
9 TraesCS1A01G026900 chr5A 96.193 2285 81 3 362 2640 179973976 179976260 0 3733


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G026900 chr1A 12733259 12735898 2639 True 4876 4876 100.000 1 2640 1 chr1A.!!$R1 2639
1 TraesCS1A01G026900 chr1A 259832860 259835137 2277 True 3742 3742 96.316 362 2640 1 chr1A.!!$R2 2278
2 TraesCS1A01G026900 chr4A 512269131 512271410 2279 True 3788 3788 96.670 362 2640 1 chr4A.!!$R1 2278
3 TraesCS1A01G026900 chr7B 542961789 542964071 2282 True 3764 3764 96.455 362 2640 1 chr7B.!!$R1 2278
4 TraesCS1A01G026900 chr6A 269424108 269426388 2280 True 3757 3757 96.407 362 2640 1 chr6A.!!$R2 2278
5 TraesCS1A01G026900 chr6A 114613421 114615700 2279 True 3733 3733 96.235 362 2640 1 chr6A.!!$R1 2278
6 TraesCS1A01G026900 chr7A 642773770 642776048 2278 False 3749 3749 96.363 362 2640 1 chr7A.!!$F2 2278
7 TraesCS1A01G026900 chr7A 96441689 96443971 2282 False 3747 3747 96.321 362 2640 1 chr7A.!!$F1 2278
8 TraesCS1A01G026900 chr5A 280100290 280102570 2280 True 3740 3740 96.274 362 2640 1 chr5A.!!$R1 2278
9 TraesCS1A01G026900 chr5A 179973976 179976260 2284 False 3733 3733 96.193 362 2640 1 chr5A.!!$F1 2278

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
255 256 0.035317 TCCTCGTCAGCACTGCATTT 59.965 50.0 3.3 0.0 0.0 2.32 F
300 301 0.174162 GAGCCACCAATGTTGATGCC 59.826 55.0 0.0 0.0 0.0 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1391 1396 0.254178 AACCTCGCATTCAGCAGGAT 59.746 50.0 10.89 0.0 46.13 3.24 R
2118 2134 1.029947 GCCCCGTTGTTACCCTGATG 61.030 60.0 0.00 0.0 0.00 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.696526 TGTGGAGGGTCTAACTCACT 57.303 50.000 0.00 0.00 36.70 3.41
23 24 3.820195 TGTGGAGGGTCTAACTCACTA 57.180 47.619 0.00 0.00 36.70 2.74
24 25 4.122337 TGTGGAGGGTCTAACTCACTAA 57.878 45.455 0.00 0.00 36.70 2.24
25 26 3.830755 TGTGGAGGGTCTAACTCACTAAC 59.169 47.826 0.00 0.00 36.70 2.34
26 27 4.087907 GTGGAGGGTCTAACTCACTAACT 58.912 47.826 0.00 0.00 36.70 2.24
27 28 4.527427 GTGGAGGGTCTAACTCACTAACTT 59.473 45.833 0.00 0.00 36.70 2.66
28 29 4.527038 TGGAGGGTCTAACTCACTAACTTG 59.473 45.833 0.00 0.00 36.70 3.16
29 30 4.496360 GAGGGTCTAACTCACTAACTTGC 58.504 47.826 0.00 0.00 35.09 4.01
30 31 3.901844 AGGGTCTAACTCACTAACTTGCA 59.098 43.478 0.00 0.00 0.00 4.08
31 32 3.995048 GGGTCTAACTCACTAACTTGCAC 59.005 47.826 0.00 0.00 0.00 4.57
32 33 4.502604 GGGTCTAACTCACTAACTTGCACA 60.503 45.833 0.00 0.00 0.00 4.57
33 34 5.238583 GGTCTAACTCACTAACTTGCACAT 58.761 41.667 0.00 0.00 0.00 3.21
34 35 5.120830 GGTCTAACTCACTAACTTGCACATG 59.879 44.000 0.00 0.00 0.00 3.21
35 36 5.926542 GTCTAACTCACTAACTTGCACATGA 59.073 40.000 0.00 0.00 0.00 3.07
36 37 6.423905 GTCTAACTCACTAACTTGCACATGAA 59.576 38.462 0.00 0.00 0.00 2.57
37 38 5.679734 AACTCACTAACTTGCACATGAAG 57.320 39.130 0.00 0.00 0.00 3.02
38 39 4.708177 ACTCACTAACTTGCACATGAAGT 58.292 39.130 0.00 0.00 35.08 3.01
47 48 2.864114 CACATGAAGTGCAGGGGAG 58.136 57.895 0.00 0.00 42.15 4.30
48 49 0.325933 CACATGAAGTGCAGGGGAGA 59.674 55.000 0.00 0.00 42.15 3.71
49 50 1.067295 ACATGAAGTGCAGGGGAGAA 58.933 50.000 0.00 0.00 31.20 2.87
50 51 1.425066 ACATGAAGTGCAGGGGAGAAA 59.575 47.619 0.00 0.00 31.20 2.52
51 52 2.089980 CATGAAGTGCAGGGGAGAAAG 58.910 52.381 0.00 0.00 0.00 2.62
52 53 1.140312 TGAAGTGCAGGGGAGAAAGT 58.860 50.000 0.00 0.00 0.00 2.66
53 54 2.334977 TGAAGTGCAGGGGAGAAAGTA 58.665 47.619 0.00 0.00 0.00 2.24
54 55 2.303022 TGAAGTGCAGGGGAGAAAGTAG 59.697 50.000 0.00 0.00 0.00 2.57
55 56 2.327325 AGTGCAGGGGAGAAAGTAGA 57.673 50.000 0.00 0.00 0.00 2.59
56 57 1.903183 AGTGCAGGGGAGAAAGTAGAC 59.097 52.381 0.00 0.00 0.00 2.59
57 58 1.066071 GTGCAGGGGAGAAAGTAGACC 60.066 57.143 0.00 0.00 0.00 3.85
58 59 0.175989 GCAGGGGAGAAAGTAGACCG 59.824 60.000 0.00 0.00 0.00 4.79
59 60 1.848652 CAGGGGAGAAAGTAGACCGA 58.151 55.000 0.00 0.00 0.00 4.69
60 61 2.389715 CAGGGGAGAAAGTAGACCGAT 58.610 52.381 0.00 0.00 0.00 4.18
61 62 2.101582 CAGGGGAGAAAGTAGACCGATG 59.898 54.545 0.00 0.00 0.00 3.84
62 63 2.108970 GGGGAGAAAGTAGACCGATGT 58.891 52.381 0.00 0.00 0.00 3.06
63 64 2.500504 GGGGAGAAAGTAGACCGATGTT 59.499 50.000 0.00 0.00 0.00 2.71
64 65 3.522553 GGGAGAAAGTAGACCGATGTTG 58.477 50.000 0.00 0.00 0.00 3.33
65 66 3.522553 GGAGAAAGTAGACCGATGTTGG 58.477 50.000 0.00 0.00 0.00 3.77
67 68 4.159135 GGAGAAAGTAGACCGATGTTGGTA 59.841 45.833 0.00 0.00 44.01 3.25
68 69 5.069501 AGAAAGTAGACCGATGTTGGTAC 57.930 43.478 0.00 0.00 44.01 3.34
69 70 4.771054 AGAAAGTAGACCGATGTTGGTACT 59.229 41.667 0.00 0.00 44.01 2.73
70 71 4.451629 AAGTAGACCGATGTTGGTACTG 57.548 45.455 0.00 0.00 44.01 2.74
71 72 2.758979 AGTAGACCGATGTTGGTACTGG 59.241 50.000 0.00 0.00 44.01 4.00
72 73 0.249398 AGACCGATGTTGGTACTGGC 59.751 55.000 0.00 0.00 44.01 4.85
73 74 0.036765 GACCGATGTTGGTACTGGCA 60.037 55.000 0.00 0.00 44.01 4.92
74 75 0.618458 ACCGATGTTGGTACTGGCAT 59.382 50.000 0.00 0.00 41.55 4.40
75 76 1.299541 CCGATGTTGGTACTGGCATC 58.700 55.000 11.36 11.36 35.63 3.91
77 78 2.309528 GATGTTGGTACTGGCATCGA 57.690 50.000 0.00 0.00 0.00 3.59
78 79 2.205074 GATGTTGGTACTGGCATCGAG 58.795 52.381 0.00 0.00 0.00 4.04
79 80 0.391130 TGTTGGTACTGGCATCGAGC 60.391 55.000 0.00 0.00 44.65 5.03
89 90 3.858040 GCATCGAGCACTAACGTTG 57.142 52.632 11.99 3.57 44.79 4.10
90 91 0.247301 GCATCGAGCACTAACGTTGC 60.247 55.000 11.99 6.85 43.86 4.17
91 92 1.067693 CATCGAGCACTAACGTTGCA 58.932 50.000 11.99 0.00 0.00 4.08
92 93 1.068474 ATCGAGCACTAACGTTGCAC 58.932 50.000 11.99 4.48 0.00 4.57
93 94 0.942410 TCGAGCACTAACGTTGCACC 60.942 55.000 11.99 2.29 0.00 5.01
94 95 0.944311 CGAGCACTAACGTTGCACCT 60.944 55.000 11.99 1.98 0.00 4.00
95 96 0.790814 GAGCACTAACGTTGCACCTC 59.209 55.000 11.99 7.94 0.00 3.85
96 97 0.602905 AGCACTAACGTTGCACCTCC 60.603 55.000 11.99 0.00 0.00 4.30
97 98 0.602905 GCACTAACGTTGCACCTCCT 60.603 55.000 11.99 0.00 0.00 3.69
98 99 1.337447 GCACTAACGTTGCACCTCCTA 60.337 52.381 11.99 0.00 0.00 2.94
99 100 2.607187 CACTAACGTTGCACCTCCTAG 58.393 52.381 11.99 0.00 0.00 3.02
100 101 1.067071 ACTAACGTTGCACCTCCTAGC 60.067 52.381 11.99 0.00 0.00 3.42
101 102 1.204941 CTAACGTTGCACCTCCTAGCT 59.795 52.381 11.99 0.00 0.00 3.32
102 103 0.037232 AACGTTGCACCTCCTAGCTC 60.037 55.000 0.00 0.00 0.00 4.09
103 104 1.517257 CGTTGCACCTCCTAGCTCG 60.517 63.158 0.00 0.00 0.00 5.03
104 105 1.811679 GTTGCACCTCCTAGCTCGC 60.812 63.158 0.00 0.00 0.00 5.03
105 106 3.019003 TTGCACCTCCTAGCTCGCC 62.019 63.158 0.00 0.00 0.00 5.54
106 107 3.461773 GCACCTCCTAGCTCGCCA 61.462 66.667 0.00 0.00 0.00 5.69
107 108 3.019003 GCACCTCCTAGCTCGCCAA 62.019 63.158 0.00 0.00 0.00 4.52
108 109 1.596934 CACCTCCTAGCTCGCCAAA 59.403 57.895 0.00 0.00 0.00 3.28
109 110 0.179000 CACCTCCTAGCTCGCCAAAT 59.821 55.000 0.00 0.00 0.00 2.32
110 111 0.179000 ACCTCCTAGCTCGCCAAATG 59.821 55.000 0.00 0.00 0.00 2.32
111 112 1.162800 CCTCCTAGCTCGCCAAATGC 61.163 60.000 0.00 0.00 0.00 3.56
112 113 0.462581 CTCCTAGCTCGCCAAATGCA 60.463 55.000 0.00 0.00 41.33 3.96
113 114 0.181114 TCCTAGCTCGCCAAATGCAT 59.819 50.000 0.00 0.00 41.33 3.96
114 115 0.590195 CCTAGCTCGCCAAATGCATC 59.410 55.000 0.00 0.00 41.33 3.91
115 116 1.302366 CTAGCTCGCCAAATGCATCA 58.698 50.000 0.00 0.00 41.33 3.07
116 117 1.263484 CTAGCTCGCCAAATGCATCAG 59.737 52.381 0.00 0.00 41.33 2.90
117 118 0.679002 AGCTCGCCAAATGCATCAGT 60.679 50.000 0.00 0.00 41.33 3.41
118 119 0.524816 GCTCGCCAAATGCATCAGTG 60.525 55.000 0.00 0.00 41.33 3.66
119 120 0.099968 CTCGCCAAATGCATCAGTGG 59.900 55.000 16.15 16.15 41.33 4.00
120 121 0.608856 TCGCCAAATGCATCAGTGGT 60.609 50.000 19.64 0.00 41.33 4.16
121 122 1.093972 CGCCAAATGCATCAGTGGTA 58.906 50.000 19.64 0.00 41.33 3.25
122 123 1.472082 CGCCAAATGCATCAGTGGTAA 59.528 47.619 19.64 0.00 41.33 2.85
123 124 2.094803 CGCCAAATGCATCAGTGGTAAA 60.095 45.455 19.64 0.00 41.33 2.01
124 125 3.253230 GCCAAATGCATCAGTGGTAAAC 58.747 45.455 19.64 5.29 40.77 2.01
125 126 3.848726 CCAAATGCATCAGTGGTAAACC 58.151 45.455 13.41 0.00 0.00 3.27
126 127 3.257873 CCAAATGCATCAGTGGTAAACCA 59.742 43.478 13.41 0.00 45.30 3.67
127 128 7.588888 GCCAAATGCATCAGTGGTAAACCAT 62.589 44.000 19.64 0.00 43.89 3.55
139 140 5.249780 TGGTAAACCATGGTGATAGTTGT 57.750 39.130 20.60 0.00 42.01 3.32
140 141 6.375830 TGGTAAACCATGGTGATAGTTGTA 57.624 37.500 20.60 0.00 42.01 2.41
141 142 6.411376 TGGTAAACCATGGTGATAGTTGTAG 58.589 40.000 20.60 0.00 42.01 2.74
142 143 5.820947 GGTAAACCATGGTGATAGTTGTAGG 59.179 44.000 20.60 0.00 35.64 3.18
143 144 3.560636 ACCATGGTGATAGTTGTAGGC 57.439 47.619 18.99 0.00 0.00 3.93
144 145 3.115390 ACCATGGTGATAGTTGTAGGCT 58.885 45.455 18.99 0.00 0.00 4.58
145 146 4.295201 ACCATGGTGATAGTTGTAGGCTA 58.705 43.478 18.99 0.00 0.00 3.93
146 147 4.719773 ACCATGGTGATAGTTGTAGGCTAA 59.280 41.667 18.99 0.00 0.00 3.09
147 148 5.190925 ACCATGGTGATAGTTGTAGGCTAAA 59.809 40.000 18.99 0.00 0.00 1.85
148 149 5.760253 CCATGGTGATAGTTGTAGGCTAAAG 59.240 44.000 2.57 0.00 0.00 1.85
149 150 5.353394 TGGTGATAGTTGTAGGCTAAAGG 57.647 43.478 0.00 0.00 0.00 3.11
150 151 4.781087 TGGTGATAGTTGTAGGCTAAAGGT 59.219 41.667 0.00 0.00 0.00 3.50
151 152 5.116882 GGTGATAGTTGTAGGCTAAAGGTG 58.883 45.833 0.00 0.00 0.00 4.00
152 153 5.105064 GGTGATAGTTGTAGGCTAAAGGTGA 60.105 44.000 0.00 0.00 0.00 4.02
153 154 5.811100 GTGATAGTTGTAGGCTAAAGGTGAC 59.189 44.000 0.00 0.00 0.00 3.67
154 155 3.697619 AGTTGTAGGCTAAAGGTGACC 57.302 47.619 0.00 0.00 0.00 4.02
155 156 2.028385 AGTTGTAGGCTAAAGGTGACCG 60.028 50.000 0.00 0.00 0.00 4.79
156 157 0.899720 TGTAGGCTAAAGGTGACCGG 59.100 55.000 0.00 0.00 0.00 5.28
157 158 0.461516 GTAGGCTAAAGGTGACCGGC 60.462 60.000 0.00 0.00 0.00 6.13
158 159 0.905809 TAGGCTAAAGGTGACCGGCA 60.906 55.000 0.00 0.00 0.00 5.69
159 160 1.745489 GGCTAAAGGTGACCGGCAG 60.745 63.158 0.00 5.05 0.00 4.85
160 161 2.399356 GCTAAAGGTGACCGGCAGC 61.399 63.158 16.93 16.93 45.24 5.25
165 166 2.904866 GGTGACCGGCAGCAACAA 60.905 61.111 18.91 0.00 44.31 2.83
166 167 2.268076 GGTGACCGGCAGCAACAAT 61.268 57.895 18.91 0.00 44.31 2.71
167 168 1.659794 GTGACCGGCAGCAACAATT 59.340 52.632 0.00 0.00 0.00 2.32
168 169 0.387239 GTGACCGGCAGCAACAATTC 60.387 55.000 0.00 0.00 0.00 2.17
169 170 1.212751 GACCGGCAGCAACAATTCC 59.787 57.895 0.00 0.00 0.00 3.01
170 171 2.212900 GACCGGCAGCAACAATTCCC 62.213 60.000 0.00 0.00 0.00 3.97
171 172 2.179018 CGGCAGCAACAATTCCCG 59.821 61.111 0.00 0.00 0.00 5.14
172 173 2.125952 GGCAGCAACAATTCCCGC 60.126 61.111 0.00 0.00 0.00 6.13
173 174 2.650196 GCAGCAACAATTCCCGCA 59.350 55.556 0.00 0.00 0.00 5.69
174 175 1.444895 GCAGCAACAATTCCCGCAG 60.445 57.895 0.00 0.00 0.00 5.18
187 188 2.588877 CGCAGGGGCAAGGATACG 60.589 66.667 0.00 0.00 41.10 3.06
188 189 2.908015 GCAGGGGCAAGGATACGA 59.092 61.111 0.00 0.00 40.80 3.43
189 190 1.523938 GCAGGGGCAAGGATACGAC 60.524 63.158 0.00 0.00 40.80 4.34
190 191 1.146263 CAGGGGCAAGGATACGACC 59.854 63.158 0.00 0.00 46.39 4.79
191 192 2.070650 AGGGGCAAGGATACGACCC 61.071 63.158 0.00 0.00 44.39 4.46
192 193 2.509422 GGGCAAGGATACGACCCC 59.491 66.667 0.00 0.00 40.69 4.95
193 194 2.108362 GGCAAGGATACGACCCCG 59.892 66.667 0.00 0.00 46.39 5.73
194 195 2.428925 GGCAAGGATACGACCCCGA 61.429 63.158 0.00 0.00 46.39 5.14
195 196 1.227176 GCAAGGATACGACCCCGAC 60.227 63.158 0.00 0.00 46.39 4.79
196 197 1.065273 CAAGGATACGACCCCGACG 59.935 63.158 0.00 0.00 46.39 5.12
197 198 2.779033 AAGGATACGACCCCGACGC 61.779 63.158 0.00 0.00 46.39 5.19
198 199 4.276146 GGATACGACCCCGACGCC 62.276 72.222 0.00 0.00 39.50 5.68
199 200 4.276146 GATACGACCCCGACGCCC 62.276 72.222 0.00 0.00 39.50 6.13
202 203 2.981914 ATACGACCCCGACGCCCATA 62.982 60.000 0.00 0.00 39.50 2.74
203 204 3.840594 CGACCCCGACGCCCATAA 61.841 66.667 0.00 0.00 38.22 1.90
204 205 2.585698 GACCCCGACGCCCATAAA 59.414 61.111 0.00 0.00 0.00 1.40
205 206 1.147600 GACCCCGACGCCCATAAAT 59.852 57.895 0.00 0.00 0.00 1.40
206 207 0.883370 GACCCCGACGCCCATAAATC 60.883 60.000 0.00 0.00 0.00 2.17
207 208 1.599797 CCCCGACGCCCATAAATCC 60.600 63.158 0.00 0.00 0.00 3.01
208 209 1.599797 CCCGACGCCCATAAATCCC 60.600 63.158 0.00 0.00 0.00 3.85
209 210 1.599797 CCGACGCCCATAAATCCCC 60.600 63.158 0.00 0.00 0.00 4.81
210 211 1.450211 CGACGCCCATAAATCCCCT 59.550 57.895 0.00 0.00 0.00 4.79
211 212 0.884704 CGACGCCCATAAATCCCCTG 60.885 60.000 0.00 0.00 0.00 4.45
212 213 1.152756 ACGCCCATAAATCCCCTGC 60.153 57.895 0.00 0.00 0.00 4.85
213 214 1.151450 CGCCCATAAATCCCCTGCT 59.849 57.895 0.00 0.00 0.00 4.24
214 215 0.890996 CGCCCATAAATCCCCTGCTC 60.891 60.000 0.00 0.00 0.00 4.26
215 216 0.540597 GCCCATAAATCCCCTGCTCC 60.541 60.000 0.00 0.00 0.00 4.70
216 217 1.152649 CCCATAAATCCCCTGCTCCT 58.847 55.000 0.00 0.00 0.00 3.69
217 218 2.348472 CCCATAAATCCCCTGCTCCTA 58.652 52.381 0.00 0.00 0.00 2.94
218 219 2.307098 CCCATAAATCCCCTGCTCCTAG 59.693 54.545 0.00 0.00 0.00 3.02
219 220 2.290577 CCATAAATCCCCTGCTCCTAGC 60.291 54.545 0.00 0.00 42.82 3.42
228 229 3.963222 GCTCCTAGCATCGGCATG 58.037 61.111 0.00 0.00 44.61 4.06
241 242 3.207669 GCATGCCTTGGCTCCTCG 61.208 66.667 6.36 0.00 0.00 4.63
242 243 2.270205 CATGCCTTGGCTCCTCGT 59.730 61.111 13.18 0.00 0.00 4.18
243 244 1.817099 CATGCCTTGGCTCCTCGTC 60.817 63.158 13.18 0.00 0.00 4.20
244 245 2.293318 ATGCCTTGGCTCCTCGTCA 61.293 57.895 13.18 0.00 0.00 4.35
245 246 2.125350 GCCTTGGCTCCTCGTCAG 60.125 66.667 4.11 0.00 0.00 3.51
246 247 2.125350 CCTTGGCTCCTCGTCAGC 60.125 66.667 0.00 0.00 36.02 4.26
247 248 2.659016 CTTGGCTCCTCGTCAGCA 59.341 61.111 5.58 0.00 38.77 4.41
248 249 1.739562 CTTGGCTCCTCGTCAGCAC 60.740 63.158 5.58 0.00 38.77 4.40
249 250 2.164865 CTTGGCTCCTCGTCAGCACT 62.165 60.000 5.58 0.00 38.77 4.40
250 251 2.125753 GGCTCCTCGTCAGCACTG 60.126 66.667 5.58 0.00 38.77 3.66
251 252 2.813042 GCTCCTCGTCAGCACTGC 60.813 66.667 0.00 0.00 36.82 4.40
252 253 2.653115 CTCCTCGTCAGCACTGCA 59.347 61.111 3.30 0.00 0.00 4.41
253 254 1.217511 CTCCTCGTCAGCACTGCAT 59.782 57.895 3.30 0.00 0.00 3.96
254 255 0.390866 CTCCTCGTCAGCACTGCATT 60.391 55.000 3.30 0.00 0.00 3.56
255 256 0.035317 TCCTCGTCAGCACTGCATTT 59.965 50.000 3.30 0.00 0.00 2.32
256 257 0.877071 CCTCGTCAGCACTGCATTTT 59.123 50.000 3.30 0.00 0.00 1.82
257 258 1.135859 CCTCGTCAGCACTGCATTTTC 60.136 52.381 3.30 0.00 0.00 2.29
258 259 1.802960 CTCGTCAGCACTGCATTTTCT 59.197 47.619 3.30 0.00 0.00 2.52
259 260 2.221169 TCGTCAGCACTGCATTTTCTT 58.779 42.857 3.30 0.00 0.00 2.52
260 261 2.618241 TCGTCAGCACTGCATTTTCTTT 59.382 40.909 3.30 0.00 0.00 2.52
261 262 3.066621 TCGTCAGCACTGCATTTTCTTTT 59.933 39.130 3.30 0.00 0.00 2.27
262 263 3.423206 CGTCAGCACTGCATTTTCTTTTC 59.577 43.478 3.30 0.00 0.00 2.29
263 264 3.423206 GTCAGCACTGCATTTTCTTTTCG 59.577 43.478 3.30 0.00 0.00 3.46
264 265 3.314913 TCAGCACTGCATTTTCTTTTCGA 59.685 39.130 3.30 0.00 0.00 3.71
265 266 4.043750 CAGCACTGCATTTTCTTTTCGAA 58.956 39.130 3.30 0.00 0.00 3.71
266 267 4.503734 CAGCACTGCATTTTCTTTTCGAAA 59.496 37.500 6.47 6.47 39.76 3.46
267 268 4.741676 AGCACTGCATTTTCTTTTCGAAAG 59.258 37.500 10.98 5.92 42.22 2.62
268 269 4.084900 GCACTGCATTTTCTTTTCGAAAGG 60.085 41.667 13.44 13.44 42.22 3.11
269 270 4.445385 CACTGCATTTTCTTTTCGAAAGGG 59.555 41.667 18.61 12.19 42.22 3.95
270 271 4.340950 ACTGCATTTTCTTTTCGAAAGGGA 59.659 37.500 18.61 8.56 42.22 4.20
271 272 5.163457 ACTGCATTTTCTTTTCGAAAGGGAA 60.163 36.000 18.61 14.26 42.22 3.97
272 273 5.288804 TGCATTTTCTTTTCGAAAGGGAAG 58.711 37.500 18.61 10.12 42.22 3.46
273 274 5.068460 TGCATTTTCTTTTCGAAAGGGAAGA 59.932 36.000 18.61 16.81 42.22 2.87
274 275 5.402568 GCATTTTCTTTTCGAAAGGGAAGAC 59.597 40.000 18.61 7.10 42.22 3.01
275 276 6.503524 CATTTTCTTTTCGAAAGGGAAGACA 58.496 36.000 18.61 6.18 42.22 3.41
276 277 6.518208 TTTTCTTTTCGAAAGGGAAGACAA 57.482 33.333 18.61 11.33 42.22 3.18
277 278 6.518208 TTTCTTTTCGAAAGGGAAGACAAA 57.482 33.333 18.61 8.72 36.72 2.83
278 279 5.494632 TCTTTTCGAAAGGGAAGACAAAC 57.505 39.130 18.61 0.00 31.06 2.93
279 280 4.944930 TCTTTTCGAAAGGGAAGACAAACA 59.055 37.500 18.61 0.00 31.06 2.83
280 281 5.592688 TCTTTTCGAAAGGGAAGACAAACAT 59.407 36.000 18.61 0.00 31.06 2.71
281 282 4.829064 TTCGAAAGGGAAGACAAACATG 57.171 40.909 0.00 0.00 0.00 3.21
282 283 4.079980 TCGAAAGGGAAGACAAACATGA 57.920 40.909 0.00 0.00 0.00 3.07
283 284 4.065088 TCGAAAGGGAAGACAAACATGAG 58.935 43.478 0.00 0.00 0.00 2.90
284 285 3.365364 CGAAAGGGAAGACAAACATGAGC 60.365 47.826 0.00 0.00 0.00 4.26
285 286 2.206576 AGGGAAGACAAACATGAGCC 57.793 50.000 0.00 0.00 0.00 4.70
286 287 1.425066 AGGGAAGACAAACATGAGCCA 59.575 47.619 0.00 0.00 0.00 4.75
287 288 1.541588 GGGAAGACAAACATGAGCCAC 59.458 52.381 0.00 0.00 0.00 5.01
288 289 1.541588 GGAAGACAAACATGAGCCACC 59.458 52.381 0.00 0.00 0.00 4.61
289 290 2.229792 GAAGACAAACATGAGCCACCA 58.770 47.619 0.00 0.00 0.00 4.17
290 291 2.363306 AGACAAACATGAGCCACCAA 57.637 45.000 0.00 0.00 0.00 3.67
291 292 2.880443 AGACAAACATGAGCCACCAAT 58.120 42.857 0.00 0.00 0.00 3.16
292 293 2.559668 AGACAAACATGAGCCACCAATG 59.440 45.455 0.00 0.00 0.00 2.82
293 294 2.297033 GACAAACATGAGCCACCAATGT 59.703 45.455 0.00 0.00 0.00 2.71
294 295 2.699846 ACAAACATGAGCCACCAATGTT 59.300 40.909 0.00 0.00 37.08 2.71
295 296 3.061322 CAAACATGAGCCACCAATGTTG 58.939 45.455 0.00 0.00 35.85 3.33
296 297 2.291209 ACATGAGCCACCAATGTTGA 57.709 45.000 0.00 0.00 0.00 3.18
297 298 2.811410 ACATGAGCCACCAATGTTGAT 58.189 42.857 0.00 0.00 0.00 2.57
298 299 2.494471 ACATGAGCCACCAATGTTGATG 59.506 45.455 0.00 0.00 0.00 3.07
299 300 0.889994 TGAGCCACCAATGTTGATGC 59.110 50.000 0.00 0.00 0.00 3.91
300 301 0.174162 GAGCCACCAATGTTGATGCC 59.826 55.000 0.00 0.00 0.00 4.40
301 302 0.251922 AGCCACCAATGTTGATGCCT 60.252 50.000 0.00 0.00 0.00 4.75
302 303 1.005805 AGCCACCAATGTTGATGCCTA 59.994 47.619 0.00 0.00 0.00 3.93
303 304 1.134946 GCCACCAATGTTGATGCCTAC 59.865 52.381 0.00 0.00 0.00 3.18
304 305 1.401552 CCACCAATGTTGATGCCTACG 59.598 52.381 0.00 0.00 0.00 3.51
305 306 1.094785 ACCAATGTTGATGCCTACGC 58.905 50.000 0.00 0.00 0.00 4.42
328 329 5.786401 AAGTATTTCTTGACTTGCTAGCG 57.214 39.130 10.77 0.00 34.61 4.26
329 330 4.184629 AGTATTTCTTGACTTGCTAGCGG 58.815 43.478 10.77 8.09 0.00 5.52
330 331 1.156736 TTTCTTGACTTGCTAGCGGC 58.843 50.000 10.77 0.00 42.22 6.53
339 340 2.822399 GCTAGCGGCATACACCCT 59.178 61.111 0.00 0.00 41.35 4.34
340 341 1.146263 GCTAGCGGCATACACCCTT 59.854 57.895 0.00 0.00 41.35 3.95
341 342 1.160329 GCTAGCGGCATACACCCTTG 61.160 60.000 0.00 0.00 41.35 3.61
342 343 0.464036 CTAGCGGCATACACCCTTGA 59.536 55.000 1.45 0.00 0.00 3.02
343 344 1.070758 CTAGCGGCATACACCCTTGAT 59.929 52.381 1.45 0.00 0.00 2.57
344 345 1.128200 AGCGGCATACACCCTTGATA 58.872 50.000 1.45 0.00 0.00 2.15
345 346 1.070758 AGCGGCATACACCCTTGATAG 59.929 52.381 1.45 0.00 0.00 2.08
346 347 1.512926 CGGCATACACCCTTGATAGC 58.487 55.000 0.00 0.00 0.00 2.97
347 348 1.512926 GGCATACACCCTTGATAGCG 58.487 55.000 0.00 0.00 0.00 4.26
348 349 1.512926 GCATACACCCTTGATAGCGG 58.487 55.000 0.00 0.00 0.00 5.52
349 350 1.512926 CATACACCCTTGATAGCGGC 58.487 55.000 0.00 0.00 0.00 6.53
350 351 1.128200 ATACACCCTTGATAGCGGCA 58.872 50.000 1.45 0.00 0.00 5.69
351 352 1.128200 TACACCCTTGATAGCGGCAT 58.872 50.000 1.45 0.00 0.00 4.40
352 353 1.128200 ACACCCTTGATAGCGGCATA 58.872 50.000 1.45 0.00 0.00 3.14
353 354 1.202651 ACACCCTTGATAGCGGCATAC 60.203 52.381 1.45 0.00 0.00 2.39
354 355 1.128200 ACCCTTGATAGCGGCATACA 58.872 50.000 1.45 0.00 0.00 2.29
355 356 1.202651 ACCCTTGATAGCGGCATACAC 60.203 52.381 1.45 0.00 0.00 2.90
356 357 1.512926 CCTTGATAGCGGCATACACC 58.487 55.000 1.45 0.00 0.00 4.16
357 358 1.512926 CTTGATAGCGGCATACACCC 58.487 55.000 1.45 0.00 0.00 4.61
358 359 1.070758 CTTGATAGCGGCATACACCCT 59.929 52.381 1.45 0.00 0.00 4.34
359 360 1.128200 TGATAGCGGCATACACCCTT 58.872 50.000 1.45 0.00 0.00 3.95
360 361 2.321719 TGATAGCGGCATACACCCTTA 58.678 47.619 1.45 0.00 0.00 2.69
392 393 8.107196 AGTTCTACTATTCCCCTGAAAATCAT 57.893 34.615 0.00 0.00 33.32 2.45
454 455 2.723273 GATGTCCATCTCGGGGTTTTT 58.277 47.619 0.00 0.00 35.04 1.94
495 496 1.656652 CTTTGCGCAGTGCTACCTAT 58.343 50.000 11.31 0.00 46.63 2.57
664 665 6.715264 AGAATCGGTTGTCTCCAAATAAAGTT 59.285 34.615 0.00 0.00 30.94 2.66
845 846 9.216117 CATGATCTCTGTGCTCATTTCAATATA 57.784 33.333 0.00 0.00 0.00 0.86
1007 1008 4.916041 TGAAGAGTTTCTCCATGGATGT 57.084 40.909 16.63 0.00 34.31 3.06
1256 1257 6.252599 TCATGTCTATTTAGGCAACAGGAT 57.747 37.500 0.00 0.00 41.81 3.24
1268 1269 3.161866 GCAACAGGATGGGGTAAGAAAA 58.838 45.455 0.00 0.00 43.62 2.29
1391 1396 5.519566 GCAAACACAAGATTTGTCACATTCA 59.480 36.000 0.00 0.00 43.23 2.57
1656 1663 5.221441 GGAGTTAGATGTTGTTGCCCTTTTT 60.221 40.000 0.00 0.00 0.00 1.94
1953 1961 4.200838 TCGAACTAGCACATCAAATGGA 57.799 40.909 0.00 0.00 33.60 3.41
1995 2003 1.538629 TGGACATCTGGGGCTCACA 60.539 57.895 0.00 0.00 0.00 3.58
2024 2032 6.207928 TGTCAACGTAGTCAATAAACGAGAA 58.792 36.000 0.63 0.00 45.00 2.87
2118 2134 8.745837 TGTTATTTATACTAGTTTTAGCGACGC 58.254 33.333 13.03 13.03 0.00 5.19
2285 2304 3.739401 AGGCCTACTTGCTTTATTGGT 57.261 42.857 1.29 0.00 0.00 3.67
2343 2362 1.611491 TCATTCGGTTTGCCCAGAAAC 59.389 47.619 0.00 0.00 35.45 2.78
2450 2470 4.992688 TGCGTGGACAATTATTTGGATTC 58.007 39.130 2.66 0.00 37.15 2.52
2560 2580 9.745880 TGCAAAATTTCGTATACTTTTTAACCA 57.254 25.926 0.56 0.00 0.00 3.67
2600 2620 7.147976 GGTGTGATGCTAACAAAAAGAAGATT 58.852 34.615 0.00 0.00 0.00 2.40
2602 2622 7.649306 GTGTGATGCTAACAAAAAGAAGATTGT 59.351 33.333 0.00 0.00 41.31 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.884961 AGTGAGTTAGACCCTCCACATAT 58.115 43.478 0.00 0.00 0.00 1.78
1 2 4.332683 AGTGAGTTAGACCCTCCACATA 57.667 45.455 0.00 0.00 0.00 2.29
2 3 3.191888 AGTGAGTTAGACCCTCCACAT 57.808 47.619 0.00 0.00 0.00 3.21
3 4 2.696526 AGTGAGTTAGACCCTCCACA 57.303 50.000 0.00 0.00 0.00 4.17
4 5 4.087907 AGTTAGTGAGTTAGACCCTCCAC 58.912 47.826 0.00 0.00 0.00 4.02
5 6 4.399483 AGTTAGTGAGTTAGACCCTCCA 57.601 45.455 0.00 0.00 0.00 3.86
6 7 4.621038 GCAAGTTAGTGAGTTAGACCCTCC 60.621 50.000 0.00 0.00 0.00 4.30
7 8 4.021368 TGCAAGTTAGTGAGTTAGACCCTC 60.021 45.833 0.00 0.00 0.00 4.30
8 9 3.901844 TGCAAGTTAGTGAGTTAGACCCT 59.098 43.478 0.00 0.00 0.00 4.34
9 10 3.995048 GTGCAAGTTAGTGAGTTAGACCC 59.005 47.826 0.00 0.00 0.00 4.46
10 11 4.628074 TGTGCAAGTTAGTGAGTTAGACC 58.372 43.478 0.00 0.00 0.00 3.85
11 12 5.926542 TCATGTGCAAGTTAGTGAGTTAGAC 59.073 40.000 0.00 0.00 0.00 2.59
12 13 6.096673 TCATGTGCAAGTTAGTGAGTTAGA 57.903 37.500 0.00 0.00 0.00 2.10
13 14 6.425114 ACTTCATGTGCAAGTTAGTGAGTTAG 59.575 38.462 0.00 0.00 29.29 2.34
14 15 6.202762 CACTTCATGTGCAAGTTAGTGAGTTA 59.797 38.462 10.15 0.00 40.06 2.24
15 16 5.008019 CACTTCATGTGCAAGTTAGTGAGTT 59.992 40.000 10.15 0.00 40.06 3.01
16 17 4.512944 CACTTCATGTGCAAGTTAGTGAGT 59.487 41.667 10.15 0.00 40.06 3.41
17 18 5.027206 CACTTCATGTGCAAGTTAGTGAG 57.973 43.478 10.15 0.00 40.06 3.51
30 31 1.067295 TTCTCCCCTGCACTTCATGT 58.933 50.000 0.00 0.00 0.00 3.21
31 32 2.089980 CTTTCTCCCCTGCACTTCATG 58.910 52.381 0.00 0.00 0.00 3.07
32 33 1.707427 ACTTTCTCCCCTGCACTTCAT 59.293 47.619 0.00 0.00 0.00 2.57
33 34 1.140312 ACTTTCTCCCCTGCACTTCA 58.860 50.000 0.00 0.00 0.00 3.02
34 35 2.567615 TCTACTTTCTCCCCTGCACTTC 59.432 50.000 0.00 0.00 0.00 3.01
35 36 2.303311 GTCTACTTTCTCCCCTGCACTT 59.697 50.000 0.00 0.00 0.00 3.16
36 37 1.903183 GTCTACTTTCTCCCCTGCACT 59.097 52.381 0.00 0.00 0.00 4.40
37 38 1.066071 GGTCTACTTTCTCCCCTGCAC 60.066 57.143 0.00 0.00 0.00 4.57
38 39 1.276622 GGTCTACTTTCTCCCCTGCA 58.723 55.000 0.00 0.00 0.00 4.41
39 40 0.175989 CGGTCTACTTTCTCCCCTGC 59.824 60.000 0.00 0.00 0.00 4.85
40 41 1.848652 TCGGTCTACTTTCTCCCCTG 58.151 55.000 0.00 0.00 0.00 4.45
41 42 2.292323 ACATCGGTCTACTTTCTCCCCT 60.292 50.000 0.00 0.00 0.00 4.79
42 43 2.108970 ACATCGGTCTACTTTCTCCCC 58.891 52.381 0.00 0.00 0.00 4.81
43 44 3.522553 CAACATCGGTCTACTTTCTCCC 58.477 50.000 0.00 0.00 0.00 4.30
44 45 3.056035 ACCAACATCGGTCTACTTTCTCC 60.056 47.826 0.00 0.00 32.11 3.71
45 46 4.189639 ACCAACATCGGTCTACTTTCTC 57.810 45.455 0.00 0.00 32.11 2.87
46 47 4.771054 AGTACCAACATCGGTCTACTTTCT 59.229 41.667 0.00 0.00 40.67 2.52
47 48 4.863131 CAGTACCAACATCGGTCTACTTTC 59.137 45.833 0.00 0.00 40.67 2.62
48 49 4.322499 CCAGTACCAACATCGGTCTACTTT 60.322 45.833 0.00 0.00 40.67 2.66
49 50 3.194968 CCAGTACCAACATCGGTCTACTT 59.805 47.826 0.00 0.00 40.67 2.24
50 51 2.758979 CCAGTACCAACATCGGTCTACT 59.241 50.000 0.00 0.00 40.67 2.57
51 52 2.737679 GCCAGTACCAACATCGGTCTAC 60.738 54.545 0.00 0.00 40.67 2.59
52 53 1.479323 GCCAGTACCAACATCGGTCTA 59.521 52.381 0.00 0.00 40.67 2.59
53 54 0.249398 GCCAGTACCAACATCGGTCT 59.751 55.000 0.00 0.00 40.67 3.85
54 55 0.036765 TGCCAGTACCAACATCGGTC 60.037 55.000 0.00 0.00 40.67 4.79
55 56 0.618458 ATGCCAGTACCAACATCGGT 59.382 50.000 0.00 0.00 43.46 4.69
56 57 1.299541 GATGCCAGTACCAACATCGG 58.700 55.000 4.44 0.00 30.57 4.18
58 59 2.205074 CTCGATGCCAGTACCAACATC 58.795 52.381 8.74 8.74 36.42 3.06
59 60 1.743772 GCTCGATGCCAGTACCAACAT 60.744 52.381 0.00 0.00 35.15 2.71
60 61 0.391130 GCTCGATGCCAGTACCAACA 60.391 55.000 0.00 0.00 35.15 3.33
61 62 0.391130 TGCTCGATGCCAGTACCAAC 60.391 55.000 4.73 0.00 42.00 3.77
62 63 0.391130 GTGCTCGATGCCAGTACCAA 60.391 55.000 4.73 0.00 42.00 3.67
63 64 1.218047 GTGCTCGATGCCAGTACCA 59.782 57.895 4.73 0.00 42.00 3.25
64 65 0.744874 TAGTGCTCGATGCCAGTACC 59.255 55.000 4.73 0.00 42.00 3.34
65 66 2.194271 GTTAGTGCTCGATGCCAGTAC 58.806 52.381 4.73 0.00 42.00 2.73
66 67 1.202256 CGTTAGTGCTCGATGCCAGTA 60.202 52.381 4.73 0.00 42.00 2.74
67 68 0.458543 CGTTAGTGCTCGATGCCAGT 60.459 55.000 4.73 0.21 42.00 4.00
68 69 0.458543 ACGTTAGTGCTCGATGCCAG 60.459 55.000 4.73 0.00 42.00 4.85
69 70 0.037697 AACGTTAGTGCTCGATGCCA 60.038 50.000 0.00 0.00 42.00 4.92
70 71 0.370273 CAACGTTAGTGCTCGATGCC 59.630 55.000 0.00 0.00 42.00 4.40
71 72 0.247301 GCAACGTTAGTGCTCGATGC 60.247 55.000 0.00 4.40 44.96 3.91
72 73 1.067693 TGCAACGTTAGTGCTCGATG 58.932 50.000 11.66 0.00 34.07 3.84
73 74 1.068474 GTGCAACGTTAGTGCTCGAT 58.932 50.000 11.66 0.00 0.00 3.59
74 75 0.942410 GGTGCAACGTTAGTGCTCGA 60.942 55.000 11.66 0.00 38.12 4.04
75 76 0.944311 AGGTGCAACGTTAGTGCTCG 60.944 55.000 11.66 0.00 38.12 5.03
76 77 0.790814 GAGGTGCAACGTTAGTGCTC 59.209 55.000 11.66 8.03 38.12 4.26
77 78 0.602905 GGAGGTGCAACGTTAGTGCT 60.603 55.000 11.66 0.00 38.12 4.40
78 79 0.602905 AGGAGGTGCAACGTTAGTGC 60.603 55.000 0.00 1.22 38.12 4.40
79 80 2.607187 CTAGGAGGTGCAACGTTAGTG 58.393 52.381 0.00 0.00 38.12 2.74
80 81 1.067071 GCTAGGAGGTGCAACGTTAGT 60.067 52.381 0.00 0.00 38.12 2.24
81 82 1.204941 AGCTAGGAGGTGCAACGTTAG 59.795 52.381 0.00 0.83 38.12 2.34
82 83 1.203994 GAGCTAGGAGGTGCAACGTTA 59.796 52.381 0.00 0.00 38.12 3.18
83 84 0.037232 GAGCTAGGAGGTGCAACGTT 60.037 55.000 0.00 0.00 38.12 3.99
84 85 1.592223 GAGCTAGGAGGTGCAACGT 59.408 57.895 0.00 0.00 38.12 3.99
85 86 1.517257 CGAGCTAGGAGGTGCAACG 60.517 63.158 0.00 0.00 38.12 4.10
86 87 1.811679 GCGAGCTAGGAGGTGCAAC 60.812 63.158 0.00 0.00 0.00 4.17
87 88 2.579201 GCGAGCTAGGAGGTGCAA 59.421 61.111 0.00 0.00 0.00 4.08
88 89 3.461773 GGCGAGCTAGGAGGTGCA 61.462 66.667 0.00 0.00 0.00 4.57
89 90 2.521958 TTTGGCGAGCTAGGAGGTGC 62.522 60.000 0.00 0.00 0.00 5.01
90 91 0.179000 ATTTGGCGAGCTAGGAGGTG 59.821 55.000 0.00 0.00 0.00 4.00
91 92 0.179000 CATTTGGCGAGCTAGGAGGT 59.821 55.000 0.00 0.00 0.00 3.85
92 93 1.162800 GCATTTGGCGAGCTAGGAGG 61.163 60.000 0.00 0.00 0.00 4.30
93 94 2.315246 GCATTTGGCGAGCTAGGAG 58.685 57.895 0.00 0.00 0.00 3.69
94 95 4.540153 GCATTTGGCGAGCTAGGA 57.460 55.556 0.00 0.00 0.00 2.94
103 104 3.253230 GTTTACCACTGATGCATTTGGC 58.747 45.455 18.24 0.17 45.13 4.52
104 105 3.257873 TGGTTTACCACTGATGCATTTGG 59.742 43.478 17.20 17.20 42.01 3.28
105 106 4.517952 TGGTTTACCACTGATGCATTTG 57.482 40.909 0.00 0.00 42.01 2.32
118 119 5.820947 CCTACAACTATCACCATGGTTTACC 59.179 44.000 16.84 0.00 31.58 2.85
119 120 5.296035 GCCTACAACTATCACCATGGTTTAC 59.704 44.000 16.84 0.00 31.58 2.01
120 121 5.190925 AGCCTACAACTATCACCATGGTTTA 59.809 40.000 16.84 6.93 31.58 2.01
121 122 4.018415 AGCCTACAACTATCACCATGGTTT 60.018 41.667 16.84 8.59 31.58 3.27
122 123 3.523564 AGCCTACAACTATCACCATGGTT 59.476 43.478 16.84 4.11 34.15 3.67
123 124 3.115390 AGCCTACAACTATCACCATGGT 58.885 45.455 13.00 13.00 0.00 3.55
124 125 3.845781 AGCCTACAACTATCACCATGG 57.154 47.619 11.19 11.19 0.00 3.66
125 126 5.760253 CCTTTAGCCTACAACTATCACCATG 59.240 44.000 0.00 0.00 0.00 3.66
126 127 5.428783 ACCTTTAGCCTACAACTATCACCAT 59.571 40.000 0.00 0.00 0.00 3.55
127 128 4.781087 ACCTTTAGCCTACAACTATCACCA 59.219 41.667 0.00 0.00 0.00 4.17
128 129 5.105064 TCACCTTTAGCCTACAACTATCACC 60.105 44.000 0.00 0.00 0.00 4.02
129 130 5.811100 GTCACCTTTAGCCTACAACTATCAC 59.189 44.000 0.00 0.00 0.00 3.06
130 131 5.105064 GGTCACCTTTAGCCTACAACTATCA 60.105 44.000 0.00 0.00 0.00 2.15
131 132 5.358090 GGTCACCTTTAGCCTACAACTATC 58.642 45.833 0.00 0.00 0.00 2.08
132 133 4.142004 CGGTCACCTTTAGCCTACAACTAT 60.142 45.833 0.00 0.00 0.00 2.12
133 134 3.194116 CGGTCACCTTTAGCCTACAACTA 59.806 47.826 0.00 0.00 0.00 2.24
134 135 2.028385 CGGTCACCTTTAGCCTACAACT 60.028 50.000 0.00 0.00 0.00 3.16
135 136 2.344025 CGGTCACCTTTAGCCTACAAC 58.656 52.381 0.00 0.00 0.00 3.32
136 137 1.276989 CCGGTCACCTTTAGCCTACAA 59.723 52.381 0.00 0.00 0.00 2.41
137 138 0.899720 CCGGTCACCTTTAGCCTACA 59.100 55.000 0.00 0.00 0.00 2.74
138 139 0.461516 GCCGGTCACCTTTAGCCTAC 60.462 60.000 1.90 0.00 0.00 3.18
139 140 0.905809 TGCCGGTCACCTTTAGCCTA 60.906 55.000 1.90 0.00 0.00 3.93
140 141 2.185310 CTGCCGGTCACCTTTAGCCT 62.185 60.000 1.90 0.00 0.00 4.58
141 142 1.745489 CTGCCGGTCACCTTTAGCC 60.745 63.158 1.90 0.00 0.00 3.93
142 143 2.399356 GCTGCCGGTCACCTTTAGC 61.399 63.158 1.90 0.00 0.00 3.09
143 144 0.605319 TTGCTGCCGGTCACCTTTAG 60.605 55.000 1.90 0.00 0.00 1.85
144 145 0.887387 GTTGCTGCCGGTCACCTTTA 60.887 55.000 1.90 0.00 0.00 1.85
145 146 2.193536 GTTGCTGCCGGTCACCTTT 61.194 57.895 1.90 0.00 0.00 3.11
146 147 2.594592 GTTGCTGCCGGTCACCTT 60.595 61.111 1.90 0.00 0.00 3.50
147 148 2.697147 ATTGTTGCTGCCGGTCACCT 62.697 55.000 1.90 0.00 0.00 4.00
148 149 1.805428 AATTGTTGCTGCCGGTCACC 61.805 55.000 1.90 0.00 0.00 4.02
149 150 0.387239 GAATTGTTGCTGCCGGTCAC 60.387 55.000 1.90 0.00 0.00 3.67
150 151 1.523154 GGAATTGTTGCTGCCGGTCA 61.523 55.000 1.90 0.00 0.00 4.02
151 152 1.212751 GGAATTGTTGCTGCCGGTC 59.787 57.895 1.90 0.00 0.00 4.79
152 153 2.275380 GGGAATTGTTGCTGCCGGT 61.275 57.895 1.90 0.00 0.00 5.28
153 154 2.573340 GGGAATTGTTGCTGCCGG 59.427 61.111 0.00 0.00 0.00 6.13
154 155 2.179018 CGGGAATTGTTGCTGCCG 59.821 61.111 0.00 0.00 40.26 5.69
155 156 2.125952 GCGGGAATTGTTGCTGCC 60.126 61.111 3.93 0.00 46.32 4.85
157 158 1.213537 CCTGCGGGAATTGTTGCTG 59.786 57.895 5.28 0.00 33.58 4.41
158 159 3.685435 CCTGCGGGAATTGTTGCT 58.315 55.556 5.28 0.00 33.58 3.91
169 170 2.203209 GTATCCTTGCCCCTGCGG 60.203 66.667 0.00 0.00 41.78 5.69
170 171 2.588877 CGTATCCTTGCCCCTGCG 60.589 66.667 0.00 0.00 41.78 5.18
171 172 1.523938 GTCGTATCCTTGCCCCTGC 60.524 63.158 0.00 0.00 38.26 4.85
172 173 1.146263 GGTCGTATCCTTGCCCCTG 59.854 63.158 0.00 0.00 0.00 4.45
173 174 2.070650 GGGTCGTATCCTTGCCCCT 61.071 63.158 0.00 0.00 33.40 4.79
174 175 2.509422 GGGTCGTATCCTTGCCCC 59.491 66.667 0.00 0.00 33.40 5.80
175 176 2.509422 GGGGTCGTATCCTTGCCC 59.491 66.667 0.00 0.00 38.61 5.36
176 177 2.108362 CGGGGTCGTATCCTTGCC 59.892 66.667 0.00 0.00 0.00 4.52
177 178 1.227176 GTCGGGGTCGTATCCTTGC 60.227 63.158 0.00 0.00 37.69 4.01
178 179 1.065273 CGTCGGGGTCGTATCCTTG 59.935 63.158 0.00 0.00 37.69 3.61
179 180 2.779033 GCGTCGGGGTCGTATCCTT 61.779 63.158 0.00 0.00 37.69 3.36
180 181 3.214845 GCGTCGGGGTCGTATCCT 61.215 66.667 0.00 0.00 37.69 3.24
181 182 4.276146 GGCGTCGGGGTCGTATCC 62.276 72.222 0.00 0.00 37.69 2.59
182 183 4.276146 GGGCGTCGGGGTCGTATC 62.276 72.222 0.00 0.00 37.69 2.24
183 184 2.981914 TATGGGCGTCGGGGTCGTAT 62.982 60.000 0.00 0.00 37.69 3.06
184 185 3.712771 TATGGGCGTCGGGGTCGTA 62.713 63.158 0.00 0.00 37.69 3.43
186 187 2.653953 ATTTATGGGCGTCGGGGTCG 62.654 60.000 0.00 0.00 37.82 4.79
187 188 0.883370 GATTTATGGGCGTCGGGGTC 60.883 60.000 0.00 0.00 0.00 4.46
188 189 1.147600 GATTTATGGGCGTCGGGGT 59.852 57.895 0.00 0.00 0.00 4.95
189 190 1.599797 GGATTTATGGGCGTCGGGG 60.600 63.158 0.00 0.00 0.00 5.73
190 191 1.599797 GGGATTTATGGGCGTCGGG 60.600 63.158 0.00 0.00 0.00 5.14
191 192 1.599797 GGGGATTTATGGGCGTCGG 60.600 63.158 0.00 0.00 0.00 4.79
192 193 0.884704 CAGGGGATTTATGGGCGTCG 60.885 60.000 0.00 0.00 0.00 5.12
193 194 1.172812 GCAGGGGATTTATGGGCGTC 61.173 60.000 0.00 0.00 0.00 5.19
194 195 1.152756 GCAGGGGATTTATGGGCGT 60.153 57.895 0.00 0.00 0.00 5.68
195 196 0.890996 GAGCAGGGGATTTATGGGCG 60.891 60.000 0.00 0.00 0.00 6.13
196 197 0.540597 GGAGCAGGGGATTTATGGGC 60.541 60.000 0.00 0.00 0.00 5.36
197 198 1.152649 AGGAGCAGGGGATTTATGGG 58.847 55.000 0.00 0.00 0.00 4.00
198 199 2.290577 GCTAGGAGCAGGGGATTTATGG 60.291 54.545 0.00 0.00 41.89 2.74
199 200 3.064900 GCTAGGAGCAGGGGATTTATG 57.935 52.381 0.00 0.00 41.89 1.90
211 212 3.963222 CATGCCGATGCTAGGAGC 58.037 61.111 0.00 0.00 42.82 4.70
219 220 2.831742 AGCCAAGGCATGCCGATG 60.832 61.111 30.50 29.38 44.88 3.84
220 221 2.517875 GAGCCAAGGCATGCCGAT 60.518 61.111 30.50 20.84 44.88 4.18
221 222 4.802051 GGAGCCAAGGCATGCCGA 62.802 66.667 30.50 0.00 44.88 5.54
222 223 4.809496 AGGAGCCAAGGCATGCCG 62.809 66.667 30.50 17.93 44.88 5.69
223 224 2.832201 GAGGAGCCAAGGCATGCC 60.832 66.667 30.12 30.12 44.88 4.40
224 225 3.207669 CGAGGAGCCAAGGCATGC 61.208 66.667 9.90 9.90 44.88 4.06
225 226 1.817099 GACGAGGAGCCAAGGCATG 60.817 63.158 14.40 0.51 44.88 4.06
226 227 2.249413 CTGACGAGGAGCCAAGGCAT 62.249 60.000 14.40 0.00 44.88 4.40
227 228 2.922503 TGACGAGGAGCCAAGGCA 60.923 61.111 14.40 0.00 44.88 4.75
228 229 2.125350 CTGACGAGGAGCCAAGGC 60.125 66.667 2.02 2.02 42.33 4.35
229 230 2.125350 GCTGACGAGGAGCCAAGG 60.125 66.667 0.00 0.00 0.00 3.61
230 231 1.739562 GTGCTGACGAGGAGCCAAG 60.740 63.158 0.00 0.00 35.43 3.61
231 232 2.210013 AGTGCTGACGAGGAGCCAA 61.210 57.895 0.00 0.00 35.43 4.52
232 233 2.601666 AGTGCTGACGAGGAGCCA 60.602 61.111 0.00 0.00 35.43 4.75
233 234 2.125753 CAGTGCTGACGAGGAGCC 60.126 66.667 0.00 0.00 35.43 4.70
234 235 2.813042 GCAGTGCTGACGAGGAGC 60.813 66.667 8.18 0.00 36.95 4.70
235 236 0.390866 AATGCAGTGCTGACGAGGAG 60.391 55.000 17.60 0.00 0.00 3.69
236 237 0.035317 AAATGCAGTGCTGACGAGGA 59.965 50.000 17.60 0.00 0.00 3.71
237 238 0.877071 AAAATGCAGTGCTGACGAGG 59.123 50.000 17.60 0.00 0.00 4.63
238 239 1.802960 AGAAAATGCAGTGCTGACGAG 59.197 47.619 17.60 0.00 0.00 4.18
239 240 1.882912 AGAAAATGCAGTGCTGACGA 58.117 45.000 17.60 0.00 0.00 4.20
240 241 2.693797 AAGAAAATGCAGTGCTGACG 57.306 45.000 17.60 0.00 0.00 4.35
241 242 3.423206 CGAAAAGAAAATGCAGTGCTGAC 59.577 43.478 17.60 3.69 0.00 3.51
242 243 3.314913 TCGAAAAGAAAATGCAGTGCTGA 59.685 39.130 17.60 0.00 0.00 4.26
243 244 3.631144 TCGAAAAGAAAATGCAGTGCTG 58.369 40.909 17.60 0.00 0.00 4.41
244 245 3.988379 TCGAAAAGAAAATGCAGTGCT 57.012 38.095 17.60 0.00 0.00 4.40
245 246 4.084900 CCTTTCGAAAAGAAAATGCAGTGC 60.085 41.667 12.41 8.58 46.98 4.40
246 247 4.445385 CCCTTTCGAAAAGAAAATGCAGTG 59.555 41.667 12.41 0.00 46.98 3.66
247 248 4.340950 TCCCTTTCGAAAAGAAAATGCAGT 59.659 37.500 12.41 0.00 46.98 4.40
248 249 4.870363 TCCCTTTCGAAAAGAAAATGCAG 58.130 39.130 12.41 0.00 46.98 4.41
249 250 4.927978 TCCCTTTCGAAAAGAAAATGCA 57.072 36.364 12.41 0.00 46.98 3.96
250 251 5.402568 GTCTTCCCTTTCGAAAAGAAAATGC 59.597 40.000 18.44 9.24 46.98 3.56
251 252 6.503524 TGTCTTCCCTTTCGAAAAGAAAATG 58.496 36.000 18.44 10.82 46.98 2.32
252 253 6.709018 TGTCTTCCCTTTCGAAAAGAAAAT 57.291 33.333 18.44 0.00 46.98 1.82
253 254 6.518208 TTGTCTTCCCTTTCGAAAAGAAAA 57.482 33.333 18.44 13.69 46.98 2.29
254 255 6.071840 TGTTTGTCTTCCCTTTCGAAAAGAAA 60.072 34.615 18.44 9.39 45.76 2.52
255 256 5.416326 TGTTTGTCTTCCCTTTCGAAAAGAA 59.584 36.000 12.41 15.50 37.01 2.52
256 257 4.944930 TGTTTGTCTTCCCTTTCGAAAAGA 59.055 37.500 12.41 8.86 0.00 2.52
257 258 5.243426 TGTTTGTCTTCCCTTTCGAAAAG 57.757 39.130 12.41 5.74 0.00 2.27
258 259 5.358442 TCATGTTTGTCTTCCCTTTCGAAAA 59.642 36.000 12.41 0.00 0.00 2.29
259 260 4.884744 TCATGTTTGTCTTCCCTTTCGAAA 59.115 37.500 10.71 10.71 0.00 3.46
260 261 4.456535 TCATGTTTGTCTTCCCTTTCGAA 58.543 39.130 0.00 0.00 0.00 3.71
261 262 4.065088 CTCATGTTTGTCTTCCCTTTCGA 58.935 43.478 0.00 0.00 0.00 3.71
262 263 3.365364 GCTCATGTTTGTCTTCCCTTTCG 60.365 47.826 0.00 0.00 0.00 3.46
263 264 3.057245 GGCTCATGTTTGTCTTCCCTTTC 60.057 47.826 0.00 0.00 0.00 2.62
264 265 2.893489 GGCTCATGTTTGTCTTCCCTTT 59.107 45.455 0.00 0.00 0.00 3.11
265 266 2.158475 TGGCTCATGTTTGTCTTCCCTT 60.158 45.455 0.00 0.00 0.00 3.95
266 267 1.425066 TGGCTCATGTTTGTCTTCCCT 59.575 47.619 0.00 0.00 0.00 4.20
267 268 1.541588 GTGGCTCATGTTTGTCTTCCC 59.458 52.381 0.00 0.00 0.00 3.97
268 269 1.541588 GGTGGCTCATGTTTGTCTTCC 59.458 52.381 0.00 0.00 0.00 3.46
269 270 2.229792 TGGTGGCTCATGTTTGTCTTC 58.770 47.619 0.00 0.00 0.00 2.87
270 271 2.363306 TGGTGGCTCATGTTTGTCTT 57.637 45.000 0.00 0.00 0.00 3.01
271 272 2.363306 TTGGTGGCTCATGTTTGTCT 57.637 45.000 0.00 0.00 0.00 3.41
272 273 2.297033 ACATTGGTGGCTCATGTTTGTC 59.703 45.455 0.00 0.00 0.00 3.18
273 274 2.318908 ACATTGGTGGCTCATGTTTGT 58.681 42.857 0.00 0.00 0.00 2.83
274 275 3.061322 CAACATTGGTGGCTCATGTTTG 58.939 45.455 0.00 0.00 33.71 2.93
275 276 2.964464 TCAACATTGGTGGCTCATGTTT 59.036 40.909 1.04 0.00 33.71 2.83
276 277 2.596346 TCAACATTGGTGGCTCATGTT 58.404 42.857 1.04 0.91 36.05 2.71
277 278 2.291209 TCAACATTGGTGGCTCATGT 57.709 45.000 1.04 0.00 0.00 3.21
278 279 2.737359 GCATCAACATTGGTGGCTCATG 60.737 50.000 6.98 0.00 39.66 3.07
279 280 1.479323 GCATCAACATTGGTGGCTCAT 59.521 47.619 6.98 0.00 39.66 2.90
280 281 0.889994 GCATCAACATTGGTGGCTCA 59.110 50.000 6.98 0.00 39.66 4.26
281 282 3.727419 GCATCAACATTGGTGGCTC 57.273 52.632 6.98 0.00 39.66 4.70
284 285 1.401552 CGTAGGCATCAACATTGGTGG 59.598 52.381 6.98 0.00 39.66 4.61
285 286 1.202177 GCGTAGGCATCAACATTGGTG 60.202 52.381 1.75 0.24 42.15 4.17
286 287 1.094785 GCGTAGGCATCAACATTGGT 58.905 50.000 1.75 0.00 39.62 3.67
287 288 1.093972 TGCGTAGGCATCAACATTGG 58.906 50.000 5.89 0.00 46.21 3.16
306 307 4.631813 CCGCTAGCAAGTCAAGAAATACTT 59.368 41.667 16.45 0.00 39.70 2.24
307 308 4.184629 CCGCTAGCAAGTCAAGAAATACT 58.815 43.478 16.45 0.00 0.00 2.12
308 309 3.242446 GCCGCTAGCAAGTCAAGAAATAC 60.242 47.826 16.45 0.00 42.97 1.89
309 310 2.936498 GCCGCTAGCAAGTCAAGAAATA 59.064 45.455 16.45 0.00 42.97 1.40
310 311 1.740025 GCCGCTAGCAAGTCAAGAAAT 59.260 47.619 16.45 0.00 42.97 2.17
311 312 1.156736 GCCGCTAGCAAGTCAAGAAA 58.843 50.000 16.45 0.00 42.97 2.52
312 313 2.840974 GCCGCTAGCAAGTCAAGAA 58.159 52.632 16.45 0.00 42.97 2.52
313 314 4.598257 GCCGCTAGCAAGTCAAGA 57.402 55.556 16.45 0.00 42.97 3.02
322 323 1.146263 AAGGGTGTATGCCGCTAGC 59.854 57.895 4.06 4.06 44.14 3.42
323 324 0.464036 TCAAGGGTGTATGCCGCTAG 59.536 55.000 0.00 0.00 0.00 3.42
324 325 1.128200 ATCAAGGGTGTATGCCGCTA 58.872 50.000 0.00 0.00 0.00 4.26
325 326 1.070758 CTATCAAGGGTGTATGCCGCT 59.929 52.381 0.00 0.00 0.00 5.52
326 327 1.512926 CTATCAAGGGTGTATGCCGC 58.487 55.000 0.00 0.00 0.00 6.53
327 328 1.512926 GCTATCAAGGGTGTATGCCG 58.487 55.000 0.00 0.00 0.00 5.69
328 329 1.512926 CGCTATCAAGGGTGTATGCC 58.487 55.000 0.00 0.00 0.00 4.40
329 330 1.512926 CCGCTATCAAGGGTGTATGC 58.487 55.000 0.00 0.00 33.91 3.14
330 331 1.202639 TGCCGCTATCAAGGGTGTATG 60.203 52.381 0.00 0.00 33.91 2.39
331 332 1.128200 TGCCGCTATCAAGGGTGTAT 58.872 50.000 0.00 0.00 33.91 2.29
332 333 1.128200 ATGCCGCTATCAAGGGTGTA 58.872 50.000 0.00 0.00 33.91 2.90
333 334 1.128200 TATGCCGCTATCAAGGGTGT 58.872 50.000 0.00 0.00 33.91 4.16
334 335 1.202639 TGTATGCCGCTATCAAGGGTG 60.203 52.381 0.00 0.00 33.91 4.61
335 336 1.128200 TGTATGCCGCTATCAAGGGT 58.872 50.000 0.00 0.00 33.91 4.34
336 337 1.512926 GTGTATGCCGCTATCAAGGG 58.487 55.000 0.00 0.00 35.49 3.95
337 338 1.512926 GGTGTATGCCGCTATCAAGG 58.487 55.000 0.00 0.00 0.00 3.61
338 339 1.070758 AGGGTGTATGCCGCTATCAAG 59.929 52.381 0.00 0.00 0.00 3.02
339 340 1.128200 AGGGTGTATGCCGCTATCAA 58.872 50.000 0.00 0.00 0.00 2.57
340 341 1.128200 AAGGGTGTATGCCGCTATCA 58.872 50.000 0.00 0.00 0.00 2.15
341 342 3.262420 CATAAGGGTGTATGCCGCTATC 58.738 50.000 0.00 0.00 0.00 2.08
342 343 3.334583 CATAAGGGTGTATGCCGCTAT 57.665 47.619 0.00 0.00 0.00 2.97
343 344 2.831685 CATAAGGGTGTATGCCGCTA 57.168 50.000 0.00 0.00 0.00 4.26
344 345 3.706055 CATAAGGGTGTATGCCGCT 57.294 52.632 0.00 0.00 0.00 5.52
349 350 5.431765 AGAACTCAAGCATAAGGGTGTATG 58.568 41.667 0.00 0.00 35.03 2.39
350 351 5.700402 AGAACTCAAGCATAAGGGTGTAT 57.300 39.130 0.00 0.00 0.00 2.29
351 352 5.720041 AGTAGAACTCAAGCATAAGGGTGTA 59.280 40.000 0.00 0.00 0.00 2.90
352 353 4.532521 AGTAGAACTCAAGCATAAGGGTGT 59.467 41.667 0.00 0.00 0.00 4.16
353 354 5.091261 AGTAGAACTCAAGCATAAGGGTG 57.909 43.478 0.00 0.00 0.00 4.61
354 355 7.419172 GGAATAGTAGAACTCAAGCATAAGGGT 60.419 40.741 0.00 0.00 0.00 4.34
355 356 6.931840 GGAATAGTAGAACTCAAGCATAAGGG 59.068 42.308 0.00 0.00 0.00 3.95
356 357 6.931840 GGGAATAGTAGAACTCAAGCATAAGG 59.068 42.308 0.00 0.00 0.00 2.69
357 358 6.931840 GGGGAATAGTAGAACTCAAGCATAAG 59.068 42.308 0.00 0.00 0.00 1.73
358 359 6.615726 AGGGGAATAGTAGAACTCAAGCATAA 59.384 38.462 0.00 0.00 0.00 1.90
359 360 6.042093 CAGGGGAATAGTAGAACTCAAGCATA 59.958 42.308 0.00 0.00 0.00 3.14
360 361 4.971924 AGGGGAATAGTAGAACTCAAGCAT 59.028 41.667 0.00 0.00 0.00 3.79
392 393 1.682323 TGGCGTTCGGTATGTGCTATA 59.318 47.619 0.00 0.00 0.00 1.31
396 397 1.087202 TCATGGCGTTCGGTATGTGC 61.087 55.000 0.00 0.00 0.00 4.57
454 455 2.276116 GCGGTGTGGAGAGAGGACA 61.276 63.158 0.00 0.00 0.00 4.02
524 525 7.122650 ACAAGTGAAAGTTTCTTGAGAAATGGA 59.877 33.333 19.12 0.00 44.69 3.41
664 665 5.249780 TCCAATTCTTACAAGGTTAGGCA 57.750 39.130 0.00 0.00 0.00 4.75
845 846 1.212935 AGAACTGTGGAGCCAAACACT 59.787 47.619 0.00 0.00 38.39 3.55
932 933 9.507329 AAATGCGTACTCCAAGATGATAAATAT 57.493 29.630 0.00 0.00 0.00 1.28
936 937 6.597672 ACAAAATGCGTACTCCAAGATGATAA 59.402 34.615 0.00 0.00 0.00 1.75
1007 1008 3.718434 AGAATCCAGCACCATTGATAGGA 59.282 43.478 0.00 0.00 0.00 2.94
1256 1257 8.763601 CCAATTGGTTATAATTTTCTTACCCCA 58.236 33.333 16.90 0.00 0.00 4.96
1391 1396 0.254178 AACCTCGCATTCAGCAGGAT 59.746 50.000 10.89 0.00 46.13 3.24
1677 1685 5.700832 AGCACGAGAGTTAATTGTTCATCAA 59.299 36.000 0.00 0.00 46.40 2.57
1693 1701 3.936453 ACAAACTGTACAAAAGCACGAGA 59.064 39.130 0.00 0.00 0.00 4.04
1953 1961 7.093771 CCAGCCTTTCCTATGAAAATTTACAGT 60.094 37.037 0.00 0.00 39.88 3.55
1995 2003 6.347079 CGTTTATTGACTACGTTGACAATGGT 60.347 38.462 27.14 12.56 35.01 3.55
2024 2032 2.094390 TCAGCCGCTCGTAGTGTAATTT 60.094 45.455 0.00 0.00 0.00 1.82
2078 2090 9.297037 AGTATAAATAACAACTGCTTGTTCCTT 57.703 29.630 7.29 5.64 45.81 3.36
2118 2134 1.029947 GCCCCGTTGTTACCCTGATG 61.030 60.000 0.00 0.00 0.00 3.07
2285 2304 1.679977 GATTTGCAGCCCAGCAGGA 60.680 57.895 0.00 0.00 46.54 3.86
2343 2362 3.669588 GTGTTTTAAAAATGTACGGCCCG 59.330 43.478 0.00 0.00 0.00 6.13
2348 2367 7.993792 CGGTTTGATGTGTTTTAAAAATGTACG 59.006 33.333 1.31 0.00 0.00 3.67
2419 2439 9.086336 CAAATAATTGTCCACGCATAAAAATCT 57.914 29.630 0.00 0.00 0.00 2.40
2481 2501 8.146479 TCCAGAAATATCGATTCACATTCAAG 57.854 34.615 1.71 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.