Multiple sequence alignment - TraesCS1A01G026400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G026400 chr1A 100.000 5421 0 0 1 5421 12591845 12586425 0.000000e+00 10011.0
1 TraesCS1A01G026400 chr1A 91.058 2259 180 8 2664 4921 13415602 13417839 0.000000e+00 3033.0
2 TraesCS1A01G026400 chr1A 89.679 2306 221 9 2621 4924 13571110 13573400 0.000000e+00 2924.0
3 TraesCS1A01G026400 chr1A 85.593 2818 337 39 2141 4939 22614979 22612212 0.000000e+00 2891.0
4 TraesCS1A01G026400 chr1A 87.561 2468 293 9 2466 4929 13454437 13456894 0.000000e+00 2844.0
5 TraesCS1A01G026400 chr1A 88.840 2294 239 8 2633 4924 13348899 13351177 0.000000e+00 2802.0
6 TraesCS1A01G026400 chr1A 90.247 1620 93 22 439 2012 13313536 13315136 0.000000e+00 2056.0
7 TraesCS1A01G026400 chr1A 85.441 1202 137 20 827 2012 13453112 13454291 0.000000e+00 1216.0
8 TraesCS1A01G026400 chr1A 84.608 1085 138 13 826 1903 13663134 13664196 0.000000e+00 1051.0
9 TraesCS1A01G026400 chr1A 85.778 900 119 7 995 1892 13414043 13414935 0.000000e+00 944.0
10 TraesCS1A01G026400 chr1A 83.396 1060 135 23 977 2012 22616064 22615022 0.000000e+00 944.0
11 TraesCS1A01G026400 chr1A 100.000 396 0 0 5702 6097 12586144 12585749 0.000000e+00 732.0
12 TraesCS1A01G026400 chr1A 88.274 307 16 1 253 539 13568430 13568736 3.500000e-92 350.0
13 TraesCS1A01G026400 chr1A 89.354 263 16 4 4986 5246 13417862 13418114 2.740000e-83 320.0
14 TraesCS1A01G026400 chr1A 88.889 261 18 3 4987 5246 13667699 13667949 1.650000e-80 311.0
15 TraesCS1A01G026400 chr1A 85.714 308 23 2 253 539 13662525 13662832 7.680000e-79 305.0
16 TraesCS1A01G026400 chr1A 83.792 327 24 8 278 580 13452571 13452892 3.600000e-72 283.0
17 TraesCS1A01G026400 chr1A 95.395 152 2 2 53 202 12591569 12591421 2.840000e-58 237.0
18 TraesCS1A01G026400 chr1A 95.395 152 2 2 277 425 12591793 12591644 2.840000e-58 237.0
19 TraesCS1A01G026400 chr1A 93.631 157 10 0 253 409 13313384 13313540 1.020000e-57 235.0
20 TraesCS1A01G026400 chr1A 86.792 212 10 2 584 784 13662931 13663135 2.860000e-53 220.0
21 TraesCS1A01G026400 chr1A 85.782 211 18 2 1 200 13662486 13662695 4.790000e-51 213.0
22 TraesCS1A01G026400 chr1A 91.946 149 7 4 54 200 13568455 13568600 2.880000e-48 204.0
23 TraesCS1A01G026400 chr1A 84.772 197 18 2 1 186 13313345 13313540 2.900000e-43 187.0
24 TraesCS1A01G026400 chr1A 82.741 197 23 7 5894 6087 13318845 13319033 1.360000e-36 165.0
25 TraesCS1A01G026400 chr1A 78.661 239 16 21 4993 5228 13456912 13457118 6.420000e-25 126.0
26 TraesCS1A01G026400 chr1A 74.923 323 58 17 5009 5317 22612188 22611875 6.420000e-25 126.0
27 TraesCS1A01G026400 chr1A 87.356 87 7 1 613 695 13452883 13452969 5.030000e-16 97.1
28 TraesCS1A01G026400 chr1D 89.101 2459 255 10 2466 4917 11178199 11180651 0.000000e+00 3044.0
29 TraesCS1A01G026400 chr1D 86.570 2703 290 43 2626 5314 11455533 11458176 0.000000e+00 2913.0
30 TraesCS1A01G026400 chr1D 90.418 2202 203 7 2741 4939 11495872 11498068 0.000000e+00 2891.0
31 TraesCS1A01G026400 chr1D 88.147 2320 258 11 2621 4936 11289605 11291911 0.000000e+00 2745.0
32 TraesCS1A01G026400 chr1D 83.148 1887 204 55 189 2012 11176218 11178053 0.000000e+00 1618.0
33 TraesCS1A01G026400 chr1D 85.406 1021 124 10 832 1843 11453759 11454763 0.000000e+00 1037.0
34 TraesCS1A01G026400 chr1D 84.004 969 124 13 904 1861 11494190 11495138 0.000000e+00 902.0
35 TraesCS1A01G026400 chr1D 81.773 1004 148 22 914 1892 11287961 11288954 0.000000e+00 808.0
36 TraesCS1A01G026400 chr1D 91.076 381 31 3 4986 5364 11180686 11181065 4.210000e-141 512.0
37 TraesCS1A01G026400 chr1D 90.026 391 33 4 4978 5363 11321837 11322226 9.120000e-138 501.0
38 TraesCS1A01G026400 chr1D 89.500 400 32 8 5702 6095 11322352 11322747 1.180000e-136 497.0
39 TraesCS1A01G026400 chr1D 88.401 319 33 3 5764 6082 11181348 11181662 1.240000e-101 381.0
40 TraesCS1A01G026400 chr1D 89.041 219 16 6 5702 5913 11458332 11458549 1.300000e-66 265.0
41 TraesCS1A01G026400 chr1D 93.919 148 9 0 387 534 11451956 11452103 2.210000e-54 224.0
42 TraesCS1A01G026400 chr1D 96.063 127 5 0 1 127 11453450 11453576 2.230000e-49 207.0
43 TraesCS1A01G026400 chr1D 79.801 302 29 18 4978 5255 11291912 11292205 2.240000e-44 191.0
44 TraesCS1A01G026400 chr1D 87.838 148 16 2 54 200 11176317 11176463 8.120000e-39 172.0
45 TraesCS1A01G026400 chr1D 75.542 323 56 16 5009 5317 11498092 11498405 2.960000e-28 137.0
46 TraesCS1A01G026400 chr1D 93.421 76 5 0 6022 6097 11181657 11181732 4.990000e-21 113.0
47 TraesCS1A01G026400 chr1B 87.672 2547 263 23 2401 4923 16840667 16843186 0.000000e+00 2916.0
48 TraesCS1A01G026400 chr1B 85.962 2536 319 27 2401 4909 16857709 16860234 0.000000e+00 2676.0
49 TraesCS1A01G026400 chr1B 84.738 1068 138 13 959 2012 16839512 16840568 0.000000e+00 1046.0
50 TraesCS1A01G026400 chr1B 85.747 884 111 5 963 1837 16518209 16519086 0.000000e+00 920.0
51 TraesCS1A01G026400 chr1B 89.924 655 55 5 1362 2012 16890540 16891187 0.000000e+00 833.0
52 TraesCS1A01G026400 chr1B 86.240 516 57 9 996 1510 16950455 16950957 1.160000e-151 547.0
53 TraesCS1A01G026400 chr1B 95.904 293 10 2 5806 6097 16861182 16861473 1.990000e-129 473.0
54 TraesCS1A01G026400 chr1B 77.945 399 48 22 4987 5364 17015025 17014646 4.790000e-51 213.0
55 TraesCS1A01G026400 chr1B 91.216 148 12 1 275 421 17338619 17338766 3.730000e-47 200.0
56 TraesCS1A01G026400 chr1B 79.553 313 18 10 253 539 16517626 16517918 1.350000e-41 182.0
57 TraesCS1A01G026400 chr1B 88.356 146 15 2 54 198 17338622 17338766 2.260000e-39 174.0
58 TraesCS1A01G026400 chr1B 100.000 46 0 0 422 467 17338787 17338832 1.090000e-12 86.1
59 TraesCS1A01G026400 chr1B 82.692 104 7 1 7 99 16517593 16517696 1.410000e-11 82.4
60 TraesCS1A01G026400 chrUn 86.156 874 106 9 995 1859 317005241 317004374 0.000000e+00 929.0
61 TraesCS1A01G026400 chrUn 85.621 765 87 17 2072 2823 317984145 317983391 0.000000e+00 782.0
62 TraesCS1A01G026400 chrUn 91.724 145 11 1 278 421 317005676 317005532 3.730000e-47 200.0
63 TraesCS1A01G026400 chrUn 91.724 145 11 1 278 421 317985476 317985332 3.730000e-47 200.0
64 TraesCS1A01G026400 chrUn 91.216 148 12 1 275 421 346216820 346216967 3.730000e-47 200.0
65 TraesCS1A01G026400 chrUn 88.356 146 15 2 54 198 317005676 317005532 2.260000e-39 174.0
66 TraesCS1A01G026400 chrUn 88.356 146 15 2 54 198 317985476 317985332 2.260000e-39 174.0
67 TraesCS1A01G026400 chrUn 88.356 146 15 2 54 198 346216823 346216967 2.260000e-39 174.0
68 TraesCS1A01G026400 chrUn 100.000 46 0 0 422 467 317005511 317005466 1.090000e-12 86.1
69 TraesCS1A01G026400 chrUn 100.000 46 0 0 422 467 317985311 317985266 1.090000e-12 86.1
70 TraesCS1A01G026400 chrUn 100.000 46 0 0 422 467 346216988 346217033 1.090000e-12 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G026400 chr1A 12585749 12591845 6096 True 2804.250000 10011 97.697500 1 6097 4 chr1A.!!$R1 6096
1 TraesCS1A01G026400 chr1A 13348899 13351177 2278 False 2802.000000 2802 88.840000 2633 4924 1 chr1A.!!$F1 2291
2 TraesCS1A01G026400 chr1A 13414043 13418114 4071 False 1432.333333 3033 88.730000 995 5246 3 chr1A.!!$F3 4251
3 TraesCS1A01G026400 chr1A 22611875 22616064 4189 True 1320.333333 2891 81.304000 977 5317 3 chr1A.!!$R2 4340
4 TraesCS1A01G026400 chr1A 13568430 13573400 4970 False 1159.333333 2924 89.966333 54 4924 3 chr1A.!!$F5 4870
5 TraesCS1A01G026400 chr1A 13452571 13457118 4547 False 913.220000 2844 84.562200 278 5228 5 chr1A.!!$F4 4950
6 TraesCS1A01G026400 chr1A 13313345 13319033 5688 False 660.750000 2056 87.847750 1 6087 4 chr1A.!!$F2 6086
7 TraesCS1A01G026400 chr1A 13662486 13667949 5463 False 420.000000 1051 86.357000 1 5246 5 chr1A.!!$F6 5245
8 TraesCS1A01G026400 chr1D 11494190 11498405 4215 False 1310.000000 2891 83.321333 904 5317 3 chr1D.!!$F5 4413
9 TraesCS1A01G026400 chr1D 11287961 11292205 4244 False 1248.000000 2745 83.240333 914 5255 3 chr1D.!!$F2 4341
10 TraesCS1A01G026400 chr1D 11176218 11181732 5514 False 973.333333 3044 88.830833 54 6097 6 chr1D.!!$F1 6043
11 TraesCS1A01G026400 chr1D 11451956 11458549 6593 False 929.200000 2913 90.199800 1 5913 5 chr1D.!!$F4 5912
12 TraesCS1A01G026400 chr1D 11321837 11322747 910 False 499.000000 501 89.763000 4978 6095 2 chr1D.!!$F3 1117
13 TraesCS1A01G026400 chr1B 16839512 16843186 3674 False 1981.000000 2916 86.205000 959 4923 2 chr1B.!!$F4 3964
14 TraesCS1A01G026400 chr1B 16857709 16861473 3764 False 1574.500000 2676 90.933000 2401 6097 2 chr1B.!!$F5 3696
15 TraesCS1A01G026400 chr1B 16890540 16891187 647 False 833.000000 833 89.924000 1362 2012 1 chr1B.!!$F1 650
16 TraesCS1A01G026400 chr1B 16950455 16950957 502 False 547.000000 547 86.240000 996 1510 1 chr1B.!!$F2 514
17 TraesCS1A01G026400 chr1B 16517593 16519086 1493 False 394.800000 920 82.664000 7 1837 3 chr1B.!!$F3 1830
18 TraesCS1A01G026400 chrUn 317004374 317005676 1302 True 347.275000 929 91.559000 54 1859 4 chrUn.!!$R1 1805
19 TraesCS1A01G026400 chrUn 317983391 317985476 2085 True 310.525000 782 91.425250 54 2823 4 chrUn.!!$R2 2769

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
136 137 0.106708 TTCTCCTGCTGCTTGACGTT 59.893 50.000 0.0 0.0 0.0 3.99 F
137 138 0.106708 TCTCCTGCTGCTTGACGTTT 59.893 50.000 0.0 0.0 0.0 3.60 F
139 140 0.179059 TCCTGCTGCTTGACGTTTCA 60.179 50.000 0.0 0.0 0.0 2.69 F
169 170 0.482446 TTGGTTGAATCCAGGGTGCT 59.518 50.000 0.0 0.0 38.8 4.40 F
391 403 0.603065 GTTGGTTGAATCCAGGGTGC 59.397 55.000 0.0 0.0 38.8 5.01 F
392 404 0.482446 TTGGTTGAATCCAGGGTGCT 59.518 50.000 0.0 0.0 38.8 4.40 F
1747 3650 1.066152 TCCTCATTGATCTCAGCGACG 59.934 52.381 0.0 0.0 0.0 5.12 F
3652 6616 0.034186 TGGATGGCACTGGGAATCAC 60.034 55.000 0.0 0.0 0.0 3.06 F
4395 7371 0.035152 TCGACGCCTACCCAACTCTA 60.035 55.000 0.0 0.0 0.0 2.43 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1921 3833 0.034756 CCCTTCCGTGTGTGACATCA 59.965 55.000 0.00 0.00 0.00 3.07 R
1970 3928 3.940303 GCAAACTGCATATGTCGGTAAG 58.060 45.455 4.29 5.72 44.26 2.34 R
2129 4652 5.664294 AAGTTCAGCCATTGCAATGAATA 57.336 34.783 35.47 17.60 41.13 1.75 R
2357 4988 0.185901 AGGAACTTTCAAGGGCAGCA 59.814 50.000 0.00 0.00 27.25 4.41 R
2361 4992 9.582431 GTAAATATTTTAGGAACTTTCAAGGGC 57.418 33.333 5.91 0.00 41.75 5.19 R
2401 5032 8.474025 AGACAATTTAACTTGTTTGGTCATCAA 58.526 29.630 11.94 0.00 39.40 2.57 R
3709 6676 0.034767 TGAGAGGCTTGGCTTGATGG 60.035 55.000 0.00 0.00 0.00 3.51 R
4947 8196 0.107017 ATTGGGATGGGAGTTGAGCG 60.107 55.000 0.00 0.00 0.00 5.03 R
5390 8768 3.166636 AGTTCTATCCCCAATTCCCCT 57.833 47.619 0.00 0.00 0.00 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 1.329906 CGCCTTGTTGCTGATCTCATC 59.670 52.381 0.00 0.00 0.00 2.92
45 46 1.674962 GCCTTGTTGCTGATCTCATCC 59.325 52.381 0.00 0.00 0.00 3.51
46 47 2.942752 GCCTTGTTGCTGATCTCATCCA 60.943 50.000 0.00 0.00 0.00 3.41
47 48 3.349927 CCTTGTTGCTGATCTCATCCAA 58.650 45.455 0.00 0.00 0.00 3.53
48 49 3.128242 CCTTGTTGCTGATCTCATCCAAC 59.872 47.826 12.96 12.96 37.92 3.77
49 50 2.715046 TGTTGCTGATCTCATCCAACC 58.285 47.619 15.39 5.01 37.27 3.77
50 51 2.306805 TGTTGCTGATCTCATCCAACCT 59.693 45.455 15.39 0.00 37.27 3.50
51 52 2.941720 GTTGCTGATCTCATCCAACCTC 59.058 50.000 10.43 0.00 34.62 3.85
52 53 1.487976 TGCTGATCTCATCCAACCTCC 59.512 52.381 0.00 0.00 0.00 4.30
53 54 1.539929 GCTGATCTCATCCAACCTCCG 60.540 57.143 0.00 0.00 0.00 4.63
54 55 1.069823 CTGATCTCATCCAACCTCCGG 59.930 57.143 0.00 0.00 0.00 5.14
55 56 0.394565 GATCTCATCCAACCTCCGGG 59.605 60.000 0.00 0.00 38.88 5.73
57 58 0.337082 TCTCATCCAACCTCCGGGTA 59.663 55.000 0.00 0.00 46.67 3.69
58 59 1.062428 TCTCATCCAACCTCCGGGTAT 60.062 52.381 0.00 0.00 46.67 2.73
59 60 1.070758 CTCATCCAACCTCCGGGTATG 59.929 57.143 0.00 0.00 46.67 2.39
60 61 0.837272 CATCCAACCTCCGGGTATGT 59.163 55.000 0.00 0.00 46.67 2.29
61 62 1.211949 CATCCAACCTCCGGGTATGTT 59.788 52.381 0.00 0.00 46.67 2.71
62 63 1.364269 TCCAACCTCCGGGTATGTTT 58.636 50.000 0.00 0.00 46.67 2.83
63 64 1.279846 TCCAACCTCCGGGTATGTTTC 59.720 52.381 0.00 0.00 46.67 2.78
64 65 1.280998 CCAACCTCCGGGTATGTTTCT 59.719 52.381 0.00 0.00 46.67 2.52
65 66 2.290705 CCAACCTCCGGGTATGTTTCTT 60.291 50.000 0.00 0.00 46.67 2.52
66 67 2.747446 CAACCTCCGGGTATGTTTCTTG 59.253 50.000 0.00 0.00 46.67 3.02
67 68 1.982958 ACCTCCGGGTATGTTTCTTGT 59.017 47.619 0.00 0.00 45.32 3.16
68 69 2.027469 ACCTCCGGGTATGTTTCTTGTC 60.027 50.000 0.00 0.00 45.32 3.18
69 70 2.268298 CTCCGGGTATGTTTCTTGTCG 58.732 52.381 0.00 0.00 0.00 4.35
70 71 1.894466 TCCGGGTATGTTTCTTGTCGA 59.106 47.619 0.00 0.00 0.00 4.20
71 72 2.498481 TCCGGGTATGTTTCTTGTCGAT 59.502 45.455 0.00 0.00 0.00 3.59
72 73 3.055675 TCCGGGTATGTTTCTTGTCGATT 60.056 43.478 0.00 0.00 0.00 3.34
73 74 3.687698 CCGGGTATGTTTCTTGTCGATTT 59.312 43.478 0.00 0.00 0.00 2.17
74 75 4.436852 CCGGGTATGTTTCTTGTCGATTTG 60.437 45.833 0.00 0.00 0.00 2.32
75 76 4.153475 CGGGTATGTTTCTTGTCGATTTGT 59.847 41.667 0.00 0.00 0.00 2.83
76 77 5.334569 CGGGTATGTTTCTTGTCGATTTGTT 60.335 40.000 0.00 0.00 0.00 2.83
77 78 6.443792 GGGTATGTTTCTTGTCGATTTGTTT 58.556 36.000 0.00 0.00 0.00 2.83
78 79 6.581166 GGGTATGTTTCTTGTCGATTTGTTTC 59.419 38.462 0.00 0.00 0.00 2.78
79 80 6.581166 GGTATGTTTCTTGTCGATTTGTTTCC 59.419 38.462 0.00 0.00 0.00 3.13
80 81 5.568685 TGTTTCTTGTCGATTTGTTTCCA 57.431 34.783 0.00 0.00 0.00 3.53
81 82 5.577835 TGTTTCTTGTCGATTTGTTTCCAG 58.422 37.500 0.00 0.00 0.00 3.86
82 83 5.124776 TGTTTCTTGTCGATTTGTTTCCAGT 59.875 36.000 0.00 0.00 0.00 4.00
83 84 6.316640 TGTTTCTTGTCGATTTGTTTCCAGTA 59.683 34.615 0.00 0.00 0.00 2.74
84 85 6.928979 TTCTTGTCGATTTGTTTCCAGTAA 57.071 33.333 0.00 0.00 0.00 2.24
85 86 6.928979 TCTTGTCGATTTGTTTCCAGTAAA 57.071 33.333 0.00 0.00 0.00 2.01
86 87 6.954944 TCTTGTCGATTTGTTTCCAGTAAAG 58.045 36.000 0.00 0.00 0.00 1.85
87 88 6.540914 TCTTGTCGATTTGTTTCCAGTAAAGT 59.459 34.615 0.00 0.00 0.00 2.66
88 89 7.711772 TCTTGTCGATTTGTTTCCAGTAAAGTA 59.288 33.333 0.00 0.00 0.00 2.24
89 90 7.416154 TGTCGATTTGTTTCCAGTAAAGTAG 57.584 36.000 0.00 0.00 0.00 2.57
90 91 6.073440 TGTCGATTTGTTTCCAGTAAAGTAGC 60.073 38.462 0.00 0.00 0.00 3.58
91 92 5.992829 TCGATTTGTTTCCAGTAAAGTAGCA 59.007 36.000 0.00 0.00 0.00 3.49
92 93 6.483974 TCGATTTGTTTCCAGTAAAGTAGCAA 59.516 34.615 0.00 0.00 0.00 3.91
93 94 7.174253 TCGATTTGTTTCCAGTAAAGTAGCAAT 59.826 33.333 0.00 0.00 0.00 3.56
94 95 7.271223 CGATTTGTTTCCAGTAAAGTAGCAATG 59.729 37.037 0.00 0.00 0.00 2.82
95 96 5.371115 TGTTTCCAGTAAAGTAGCAATGC 57.629 39.130 0.00 0.00 0.00 3.56
96 97 5.070001 TGTTTCCAGTAAAGTAGCAATGCT 58.930 37.500 13.92 13.92 43.41 3.79
97 98 5.534654 TGTTTCCAGTAAAGTAGCAATGCTT 59.465 36.000 14.85 0.00 40.44 3.91
98 99 5.627499 TTCCAGTAAAGTAGCAATGCTTG 57.373 39.130 14.85 3.18 40.44 4.01
99 100 4.009675 TCCAGTAAAGTAGCAATGCTTGG 58.990 43.478 14.85 13.31 40.44 3.61
100 101 3.129287 CCAGTAAAGTAGCAATGCTTGGG 59.871 47.826 14.85 0.12 40.44 4.12
101 102 3.758554 CAGTAAAGTAGCAATGCTTGGGT 59.241 43.478 14.85 0.00 40.44 4.51
102 103 4.010349 AGTAAAGTAGCAATGCTTGGGTC 58.990 43.478 14.85 0.58 40.44 4.46
103 104 2.887151 AAGTAGCAATGCTTGGGTCT 57.113 45.000 14.85 2.09 40.44 3.85
104 105 4.301072 AAAGTAGCAATGCTTGGGTCTA 57.699 40.909 14.85 0.00 40.44 2.59
105 106 4.301072 AAGTAGCAATGCTTGGGTCTAA 57.699 40.909 14.85 0.00 40.44 2.10
106 107 4.301072 AGTAGCAATGCTTGGGTCTAAA 57.699 40.909 14.85 0.00 40.44 1.85
107 108 4.662278 AGTAGCAATGCTTGGGTCTAAAA 58.338 39.130 14.85 0.00 40.44 1.52
108 109 5.264395 AGTAGCAATGCTTGGGTCTAAAAT 58.736 37.500 14.85 0.00 40.44 1.82
109 110 4.460948 AGCAATGCTTGGGTCTAAAATG 57.539 40.909 0.00 0.00 33.89 2.32
110 111 3.834231 AGCAATGCTTGGGTCTAAAATGT 59.166 39.130 0.00 0.00 33.89 2.71
111 112 4.284234 AGCAATGCTTGGGTCTAAAATGTT 59.716 37.500 0.00 0.00 33.89 2.71
112 113 5.480073 AGCAATGCTTGGGTCTAAAATGTTA 59.520 36.000 0.00 0.00 33.89 2.41
113 114 6.155049 AGCAATGCTTGGGTCTAAAATGTTAT 59.845 34.615 0.00 0.00 33.89 1.89
114 115 6.818142 GCAATGCTTGGGTCTAAAATGTTATT 59.182 34.615 0.00 0.00 0.00 1.40
115 116 7.201548 GCAATGCTTGGGTCTAAAATGTTATTG 60.202 37.037 0.00 0.00 0.00 1.90
116 117 5.719173 TGCTTGGGTCTAAAATGTTATTGC 58.281 37.500 0.00 0.00 0.00 3.56
117 118 5.480073 TGCTTGGGTCTAAAATGTTATTGCT 59.520 36.000 0.00 0.00 0.00 3.91
118 119 6.014669 TGCTTGGGTCTAAAATGTTATTGCTT 60.015 34.615 0.00 0.00 0.00 3.91
119 120 6.531594 GCTTGGGTCTAAAATGTTATTGCTTC 59.468 38.462 0.00 0.00 0.00 3.86
120 121 7.577616 GCTTGGGTCTAAAATGTTATTGCTTCT 60.578 37.037 0.00 0.00 0.00 2.85
121 122 7.391148 TGGGTCTAAAATGTTATTGCTTCTC 57.609 36.000 0.00 0.00 0.00 2.87
122 123 6.377146 TGGGTCTAAAATGTTATTGCTTCTCC 59.623 38.462 0.00 0.00 0.00 3.71
123 124 6.603599 GGGTCTAAAATGTTATTGCTTCTCCT 59.396 38.462 0.00 0.00 0.00 3.69
124 125 7.415653 GGGTCTAAAATGTTATTGCTTCTCCTG 60.416 40.741 0.00 0.00 0.00 3.86
125 126 6.969473 GTCTAAAATGTTATTGCTTCTCCTGC 59.031 38.462 0.00 0.00 0.00 4.85
126 127 5.990120 AAAATGTTATTGCTTCTCCTGCT 57.010 34.783 0.00 0.00 0.00 4.24
127 128 4.978083 AATGTTATTGCTTCTCCTGCTG 57.022 40.909 0.00 0.00 0.00 4.41
128 129 2.086869 TGTTATTGCTTCTCCTGCTGC 58.913 47.619 0.00 0.00 0.00 5.25
129 130 2.290514 TGTTATTGCTTCTCCTGCTGCT 60.291 45.455 0.00 0.00 0.00 4.24
130 131 2.751806 GTTATTGCTTCTCCTGCTGCTT 59.248 45.455 0.00 0.00 0.00 3.91
131 132 1.174783 ATTGCTTCTCCTGCTGCTTG 58.825 50.000 0.00 0.00 0.00 4.01
132 133 0.109153 TTGCTTCTCCTGCTGCTTGA 59.891 50.000 0.00 0.00 0.00 3.02
133 134 0.604780 TGCTTCTCCTGCTGCTTGAC 60.605 55.000 0.00 0.00 0.00 3.18
134 135 1.633852 GCTTCTCCTGCTGCTTGACG 61.634 60.000 0.00 0.00 0.00 4.35
135 136 0.320247 CTTCTCCTGCTGCTTGACGT 60.320 55.000 0.00 0.00 0.00 4.34
136 137 0.106708 TTCTCCTGCTGCTTGACGTT 59.893 50.000 0.00 0.00 0.00 3.99
137 138 0.106708 TCTCCTGCTGCTTGACGTTT 59.893 50.000 0.00 0.00 0.00 3.60
138 139 0.514691 CTCCTGCTGCTTGACGTTTC 59.485 55.000 0.00 0.00 0.00 2.78
139 140 0.179059 TCCTGCTGCTTGACGTTTCA 60.179 50.000 0.00 0.00 0.00 2.69
140 141 0.877071 CCTGCTGCTTGACGTTTCAT 59.123 50.000 0.00 0.00 0.00 2.57
141 142 1.135859 CCTGCTGCTTGACGTTTCATC 60.136 52.381 0.00 0.00 0.00 2.92
142 143 0.512518 TGCTGCTTGACGTTTCATCG 59.487 50.000 0.00 0.00 0.00 3.84
143 144 0.790207 GCTGCTTGACGTTTCATCGA 59.210 50.000 0.00 0.00 34.70 3.59
144 145 1.394917 GCTGCTTGACGTTTCATCGAT 59.605 47.619 0.00 0.00 34.70 3.59
145 146 2.159653 GCTGCTTGACGTTTCATCGATT 60.160 45.455 0.00 0.00 34.70 3.34
146 147 3.667960 GCTGCTTGACGTTTCATCGATTT 60.668 43.478 0.00 0.00 34.70 2.17
147 148 3.809234 TGCTTGACGTTTCATCGATTTG 58.191 40.909 0.00 0.00 34.70 2.32
148 149 2.589841 GCTTGACGTTTCATCGATTTGC 59.410 45.455 0.00 0.00 34.70 3.68
149 150 2.502280 TGACGTTTCATCGATTTGCG 57.498 45.000 0.00 0.90 42.69 4.85
150 151 1.795872 TGACGTTTCATCGATTTGCGT 59.204 42.857 11.95 11.95 41.80 5.24
151 152 2.222213 TGACGTTTCATCGATTTGCGTT 59.778 40.909 12.93 1.54 41.80 4.84
152 153 2.570169 ACGTTTCATCGATTTGCGTTG 58.430 42.857 0.00 0.00 41.80 4.10
153 154 1.904412 CGTTTCATCGATTTGCGTTGG 59.096 47.619 0.00 0.00 39.53 3.77
154 155 2.664424 CGTTTCATCGATTTGCGTTGGT 60.664 45.455 0.00 0.00 39.53 3.67
155 156 3.305110 GTTTCATCGATTTGCGTTGGTT 58.695 40.909 0.00 0.00 39.53 3.67
156 157 2.610219 TCATCGATTTGCGTTGGTTG 57.390 45.000 0.00 0.00 39.53 3.77
157 158 2.147150 TCATCGATTTGCGTTGGTTGA 58.853 42.857 0.00 0.00 39.53 3.18
158 159 2.550180 TCATCGATTTGCGTTGGTTGAA 59.450 40.909 0.00 0.00 39.53 2.69
159 160 3.190327 TCATCGATTTGCGTTGGTTGAAT 59.810 39.130 0.00 0.00 39.53 2.57
160 161 3.196007 TCGATTTGCGTTGGTTGAATC 57.804 42.857 0.00 0.00 41.80 2.52
161 162 2.095466 TCGATTTGCGTTGGTTGAATCC 60.095 45.455 0.00 0.00 41.80 3.01
162 163 2.351253 CGATTTGCGTTGGTTGAATCCA 60.351 45.455 0.00 0.00 35.49 3.41
163 164 2.791383 TTTGCGTTGGTTGAATCCAG 57.209 45.000 0.00 0.00 38.80 3.86
164 165 0.958091 TTGCGTTGGTTGAATCCAGG 59.042 50.000 0.00 0.00 38.80 4.45
165 166 0.893270 TGCGTTGGTTGAATCCAGGG 60.893 55.000 0.00 0.00 38.80 4.45
166 167 0.893727 GCGTTGGTTGAATCCAGGGT 60.894 55.000 0.00 0.00 38.80 4.34
167 168 0.881118 CGTTGGTTGAATCCAGGGTG 59.119 55.000 0.00 0.00 38.80 4.61
168 169 0.603065 GTTGGTTGAATCCAGGGTGC 59.397 55.000 0.00 0.00 38.80 5.01
169 170 0.482446 TTGGTTGAATCCAGGGTGCT 59.518 50.000 0.00 0.00 38.80 4.40
170 171 1.367346 TGGTTGAATCCAGGGTGCTA 58.633 50.000 0.00 0.00 33.19 3.49
171 172 1.281867 TGGTTGAATCCAGGGTGCTAG 59.718 52.381 0.00 0.00 33.19 3.42
172 173 1.282157 GGTTGAATCCAGGGTGCTAGT 59.718 52.381 0.00 0.00 0.00 2.57
173 174 2.290960 GGTTGAATCCAGGGTGCTAGTT 60.291 50.000 0.00 0.00 0.00 2.24
174 175 3.421844 GTTGAATCCAGGGTGCTAGTTT 58.578 45.455 0.00 0.00 0.00 2.66
175 176 3.350219 TGAATCCAGGGTGCTAGTTTC 57.650 47.619 0.00 0.00 0.00 2.78
176 177 2.026262 TGAATCCAGGGTGCTAGTTTCC 60.026 50.000 0.00 0.00 0.00 3.13
177 178 1.668826 ATCCAGGGTGCTAGTTTCCA 58.331 50.000 0.00 0.00 0.00 3.53
178 179 0.984230 TCCAGGGTGCTAGTTTCCAG 59.016 55.000 0.00 0.00 0.00 3.86
179 180 0.693049 CCAGGGTGCTAGTTTCCAGT 59.307 55.000 0.00 0.00 0.00 4.00
180 181 1.611673 CCAGGGTGCTAGTTTCCAGTG 60.612 57.143 0.00 0.00 0.00 3.66
181 182 1.347707 CAGGGTGCTAGTTTCCAGTGA 59.652 52.381 0.00 0.00 0.00 3.41
182 183 2.026822 CAGGGTGCTAGTTTCCAGTGAT 60.027 50.000 0.00 0.00 0.00 3.06
183 184 2.644798 AGGGTGCTAGTTTCCAGTGATT 59.355 45.455 0.00 0.00 0.00 2.57
184 185 3.844211 AGGGTGCTAGTTTCCAGTGATTA 59.156 43.478 0.00 0.00 0.00 1.75
185 186 4.475016 AGGGTGCTAGTTTCCAGTGATTAT 59.525 41.667 0.00 0.00 0.00 1.28
186 187 5.044846 AGGGTGCTAGTTTCCAGTGATTATT 60.045 40.000 0.00 0.00 0.00 1.40
187 188 5.297029 GGGTGCTAGTTTCCAGTGATTATTC 59.703 44.000 0.00 0.00 0.00 1.75
188 189 5.880332 GGTGCTAGTTTCCAGTGATTATTCA 59.120 40.000 0.00 0.00 0.00 2.57
189 190 6.037610 GGTGCTAGTTTCCAGTGATTATTCAG 59.962 42.308 0.00 0.00 30.85 3.02
190 191 6.818644 GTGCTAGTTTCCAGTGATTATTCAGA 59.181 38.462 0.00 0.00 30.85 3.27
191 192 7.010923 GTGCTAGTTTCCAGTGATTATTCAGAG 59.989 40.741 0.00 0.00 30.85 3.35
192 193 6.018343 GCTAGTTTCCAGTGATTATTCAGAGC 60.018 42.308 0.00 0.00 30.85 4.09
193 194 5.809001 AGTTTCCAGTGATTATTCAGAGCA 58.191 37.500 0.00 0.00 30.85 4.26
194 195 5.645497 AGTTTCCAGTGATTATTCAGAGCAC 59.355 40.000 0.00 0.00 30.85 4.40
195 196 4.142609 TCCAGTGATTATTCAGAGCACC 57.857 45.455 0.00 0.00 30.85 5.01
196 197 3.519107 TCCAGTGATTATTCAGAGCACCA 59.481 43.478 0.00 0.00 30.85 4.17
197 198 4.164796 TCCAGTGATTATTCAGAGCACCAT 59.835 41.667 0.00 0.00 30.85 3.55
198 199 4.275196 CCAGTGATTATTCAGAGCACCATG 59.725 45.833 0.00 0.00 30.85 3.66
199 200 3.881688 AGTGATTATTCAGAGCACCATGC 59.118 43.478 0.00 0.00 36.63 4.06
227 228 2.701780 GCTCCTCGTCTCCGCTTCA 61.702 63.158 0.00 0.00 0.00 3.02
391 403 0.603065 GTTGGTTGAATCCAGGGTGC 59.397 55.000 0.00 0.00 38.80 5.01
392 404 0.482446 TTGGTTGAATCCAGGGTGCT 59.518 50.000 0.00 0.00 38.80 4.40
577 723 3.827008 TGCTCTGTTCTGTTCTGTTCT 57.173 42.857 0.00 0.00 0.00 3.01
578 724 3.461061 TGCTCTGTTCTGTTCTGTTCTG 58.539 45.455 0.00 0.00 0.00 3.02
579 725 2.222911 GCTCTGTTCTGTTCTGTTCTGC 59.777 50.000 0.00 0.00 0.00 4.26
580 726 3.726607 CTCTGTTCTGTTCTGTTCTGCT 58.273 45.455 0.00 0.00 0.00 4.24
581 727 3.722147 TCTGTTCTGTTCTGTTCTGCTC 58.278 45.455 0.00 0.00 0.00 4.26
582 728 3.386078 TCTGTTCTGTTCTGTTCTGCTCT 59.614 43.478 0.00 0.00 0.00 4.09
752 1257 2.570415 TGCAGGTTTCCGGTCATTAA 57.430 45.000 0.00 0.00 0.00 1.40
803 2226 6.779049 TGACCCGGCTATAAGTTCTTATAAGA 59.221 38.462 11.24 11.24 0.00 2.10
1015 2882 3.638627 AGCTCTCATGGATATTGTCACGA 59.361 43.478 0.00 0.00 0.00 4.35
1221 3088 4.451891 TGATGTCAGAGAGCTCTCCTAT 57.548 45.455 34.87 24.12 43.88 2.57
1227 3094 4.216257 GTCAGAGAGCTCTCCTATGTCATC 59.784 50.000 34.87 16.72 43.88 2.92
1282 3158 1.354337 CCACATTCAGCCTGACGACG 61.354 60.000 0.00 0.00 0.00 5.12
1525 3407 2.093447 GGCATATATGGGAAGAGGGACG 60.093 54.545 14.51 0.00 0.00 4.79
1743 3646 4.470664 AGGGATATCCTCATTGATCTCAGC 59.529 45.833 21.18 0.00 44.06 4.26
1744 3647 4.431809 GGATATCCTCATTGATCTCAGCG 58.568 47.826 14.97 0.00 0.00 5.18
1745 3648 4.159321 GGATATCCTCATTGATCTCAGCGA 59.841 45.833 14.97 0.00 0.00 4.93
1746 3649 2.879002 TCCTCATTGATCTCAGCGAC 57.121 50.000 0.00 0.00 0.00 5.19
1747 3650 1.066152 TCCTCATTGATCTCAGCGACG 59.934 52.381 0.00 0.00 0.00 5.12
1748 3651 1.485397 CTCATTGATCTCAGCGACGG 58.515 55.000 0.00 0.00 0.00 4.79
1758 3661 4.379243 AGCGACGGCAACCCTCAG 62.379 66.667 0.00 0.00 43.41 3.35
1768 3671 2.290577 GGCAACCCTCAGTCAGATCTTT 60.291 50.000 0.00 0.00 0.00 2.52
1781 3684 7.046652 CAGTCAGATCTTTCAATACTGGATGT 58.953 38.462 0.00 0.00 30.55 3.06
1782 3685 7.551974 CAGTCAGATCTTTCAATACTGGATGTT 59.448 37.037 0.00 0.00 30.55 2.71
2006 3964 4.319549 GCAGTTTGCACTAGACTGTAAACC 60.320 45.833 17.58 5.86 43.76 3.27
2007 3965 5.057149 CAGTTTGCACTAGACTGTAAACCT 58.943 41.667 17.58 7.69 43.76 3.50
2009 3967 6.704493 CAGTTTGCACTAGACTGTAAACCTTA 59.296 38.462 17.58 0.00 43.76 2.69
2037 3995 9.887862 ATATATTCTTCCCTCCATTGTCAAAAT 57.112 29.630 0.00 0.00 0.00 1.82
2039 3997 9.713684 ATATTCTTCCCTCCATTGTCAAAATAA 57.286 29.630 0.00 0.00 0.00 1.40
2044 4002 7.346751 TCCCTCCATTGTCAAAATAATAAGC 57.653 36.000 0.00 0.00 0.00 3.09
2048 4044 8.253113 CCTCCATTGTCAAAATAATAAGCAAGT 58.747 33.333 0.00 0.00 0.00 3.16
2153 4677 4.439305 TCATTGCAATGGCTGAACTTAC 57.561 40.909 33.22 0.00 41.91 2.34
2161 4685 1.350684 TGGCTGAACTTACTGGCATCA 59.649 47.619 0.00 0.00 38.74 3.07
2179 4703 2.897436 TCAGTCGAAGCAATCCATCTG 58.103 47.619 0.00 0.00 0.00 2.90
2209 4751 7.490962 TTTACATTTCACCAAGTGAGTGTAG 57.509 36.000 17.09 5.04 43.69 2.74
2357 4988 1.374505 GGTGGCAATGTGCGCAAAT 60.375 52.632 14.00 10.47 46.21 2.32
2361 4992 1.418367 GCAATGTGCGCAAATGCTG 59.582 52.632 26.65 18.42 38.03 4.41
2371 5002 1.435577 GCAAATGCTGCCCTTGAAAG 58.564 50.000 13.18 0.00 46.13 2.62
2385 5016 8.201242 TGCCCTTGAAAGTTCCTAAAATATTT 57.799 30.769 0.00 0.00 0.00 1.40
2386 5017 9.315363 TGCCCTTGAAAGTTCCTAAAATATTTA 57.685 29.630 0.01 0.00 0.00 1.40
2387 5018 9.582431 GCCCTTGAAAGTTCCTAAAATATTTAC 57.418 33.333 0.01 0.00 0.00 2.01
2463 5228 7.117236 CACATTATATTTCCATGCATGCCTTTC 59.883 37.037 21.69 0.00 0.00 2.62
2464 5229 6.982160 TTATATTTCCATGCATGCCTTTCT 57.018 33.333 21.69 6.69 0.00 2.52
2513 5280 4.096382 ACGAAAGGATAATGCCACACAATC 59.904 41.667 0.00 0.00 0.00 2.67
2515 5287 5.527214 CGAAAGGATAATGCCACACAATCTA 59.473 40.000 0.00 0.00 0.00 1.98
2527 5299 5.551233 CCACACAATCTAAGTCTCCAAGAA 58.449 41.667 0.00 0.00 0.00 2.52
2543 5315 4.997395 TCCAAGAAGTTCATTAGCTGTCAC 59.003 41.667 5.50 0.00 0.00 3.67
2576 5394 1.279025 GGGCCAATCTGTACCAGGGA 61.279 60.000 4.39 0.00 31.51 4.20
2618 5521 5.630680 CCGACCATTTGAATTTCTGAAGTTG 59.369 40.000 2.68 0.00 0.00 3.16
2619 5522 5.630680 CGACCATTTGAATTTCTGAAGTTGG 59.369 40.000 2.68 1.50 0.00 3.77
2657 5562 3.578688 GTCATTGATCCAACAACTTGCC 58.421 45.455 0.00 0.00 32.50 4.52
2676 5581 4.730966 TGCCATTTGTGTTTTACTCCCTA 58.269 39.130 0.00 0.00 0.00 3.53
2770 5723 6.644181 TCAGATTATCGAGTTTGAGATGCATC 59.356 38.462 19.37 19.37 0.00 3.91
2787 5740 7.044798 AGATGCATCCTTCTTACTAGTTTGTC 58.955 38.462 23.06 0.00 0.00 3.18
2791 5744 7.396339 TGCATCCTTCTTACTAGTTTGTCTCTA 59.604 37.037 0.00 0.00 0.00 2.43
2939 5899 4.615588 TGGGATGAAAAATTGTGGGAAC 57.384 40.909 0.00 0.00 0.00 3.62
2983 5943 4.215908 ACAGGAATAATCTAGGCAGTCGA 58.784 43.478 0.00 0.00 0.00 4.20
2989 5949 7.233757 AGGAATAATCTAGGCAGTCGACTAATT 59.766 37.037 19.57 12.72 30.17 1.40
2992 5952 4.808077 TCTAGGCAGTCGACTAATTACG 57.192 45.455 19.57 5.81 30.17 3.18
3033 5993 3.189287 GTCTCCAATTCATGTTGCTCGTT 59.811 43.478 0.00 0.00 0.00 3.85
3038 5998 1.234821 TTCATGTTGCTCGTTGGACC 58.765 50.000 0.00 0.00 0.00 4.46
3088 6048 5.070981 ACTTTCTGTTGATGACTCCAGAAGA 59.929 40.000 0.00 0.00 42.84 2.87
3543 6507 7.743749 AGTATGATCCAGCCAATATATGATCC 58.256 38.462 6.19 0.00 0.00 3.36
3547 6511 5.946942 TCCAGCCAATATATGATCCTCTC 57.053 43.478 0.00 0.00 0.00 3.20
3650 6614 2.077687 ATTGGATGGCACTGGGAATC 57.922 50.000 0.00 0.00 0.00 2.52
3652 6616 0.034186 TGGATGGCACTGGGAATCAC 60.034 55.000 0.00 0.00 0.00 3.06
3653 6617 0.034186 GGATGGCACTGGGAATCACA 60.034 55.000 0.00 0.00 0.00 3.58
3654 6618 1.410648 GGATGGCACTGGGAATCACAT 60.411 52.381 0.00 0.00 0.00 3.21
3674 6641 9.671279 ATCACATCATGTCTTCACAAAGTAATA 57.329 29.630 0.00 0.00 35.64 0.98
3688 6655 7.383029 TCACAAAGTAATATTCGTCGTTTGTCT 59.617 33.333 0.00 0.00 35.12 3.41
3742 6709 4.387598 AGCCTCTCACAAATATCATGAGC 58.612 43.478 0.09 0.00 39.80 4.26
3946 6916 5.876357 TCAGGTACCAAAATCAGTAAGCTT 58.124 37.500 15.94 3.48 0.00 3.74
4205 7181 1.352017 TGAGGGAGCTTCAGATTTGCA 59.648 47.619 0.00 0.00 0.00 4.08
4380 7356 2.032377 TCCGCAAATTTGTGTCTTCGAC 60.032 45.455 25.67 4.20 36.98 4.20
4386 7362 1.774639 TTTGTGTCTTCGACGCCTAC 58.225 50.000 5.24 0.00 41.72 3.18
4395 7371 0.035152 TCGACGCCTACCCAACTCTA 60.035 55.000 0.00 0.00 0.00 2.43
4457 7433 5.502079 TCTCGAACCTCTCTGAGTTAATCT 58.498 41.667 4.32 0.00 0.00 2.40
4576 7552 1.884926 GCTGCTAGTCATCCGTGCC 60.885 63.158 0.00 0.00 0.00 5.01
4604 7580 4.251268 GTTCCGCTGTATGGTAGACTTTT 58.749 43.478 0.00 0.00 0.00 2.27
4651 7627 1.981256 TCAAGTTTGAACCAGGAGCC 58.019 50.000 0.00 0.00 33.55 4.70
4931 8180 1.202582 CTGCACCTAACTACTCACGCT 59.797 52.381 0.00 0.00 0.00 5.07
4932 8181 1.067846 TGCACCTAACTACTCACGCTG 60.068 52.381 0.00 0.00 0.00 5.18
4933 8182 1.630148 CACCTAACTACTCACGCTGC 58.370 55.000 0.00 0.00 0.00 5.25
4934 8183 1.067846 CACCTAACTACTCACGCTGCA 60.068 52.381 0.00 0.00 0.00 4.41
4935 8184 1.067776 ACCTAACTACTCACGCTGCAC 60.068 52.381 0.00 0.00 0.00 4.57
4937 8186 1.202582 CTAACTACTCACGCTGCACCT 59.797 52.381 0.00 0.00 0.00 4.00
4938 8187 1.254026 AACTACTCACGCTGCACCTA 58.746 50.000 0.00 0.00 0.00 3.08
4939 8188 1.254026 ACTACTCACGCTGCACCTAA 58.746 50.000 0.00 0.00 0.00 2.69
4941 8190 1.202582 CTACTCACGCTGCACCTAACT 59.797 52.381 0.00 0.00 0.00 2.24
4942 8191 1.254026 ACTCACGCTGCACCTAACTA 58.746 50.000 0.00 0.00 0.00 2.24
4943 8192 1.067776 ACTCACGCTGCACCTAACTAC 60.068 52.381 0.00 0.00 0.00 2.73
4944 8193 1.202582 CTCACGCTGCACCTAACTACT 59.797 52.381 0.00 0.00 0.00 2.57
4945 8194 1.201647 TCACGCTGCACCTAACTACTC 59.798 52.381 0.00 0.00 0.00 2.59
4946 8195 1.067846 CACGCTGCACCTAACTACTCA 60.068 52.381 0.00 0.00 0.00 3.41
4947 8196 1.067776 ACGCTGCACCTAACTACTCAC 60.068 52.381 0.00 0.00 0.00 3.51
4974 8223 1.073698 TCCCATCCCAATCATCCCCC 61.074 60.000 0.00 0.00 0.00 5.40
4975 8224 1.075482 CCATCCCAATCATCCCCCG 59.925 63.158 0.00 0.00 0.00 5.73
4978 8227 1.076024 CATCCCAATCATCCCCCGATT 59.924 52.381 0.00 0.00 33.33 3.34
4979 8228 2.126105 TCCCAATCATCCCCCGATTA 57.874 50.000 0.00 0.00 31.88 1.75
4980 8229 2.423769 TCCCAATCATCCCCCGATTAA 58.576 47.619 0.00 0.00 31.88 1.40
4981 8230 2.375174 TCCCAATCATCCCCCGATTAAG 59.625 50.000 0.00 0.00 31.88 1.85
4982 8231 2.108250 CCCAATCATCCCCCGATTAAGT 59.892 50.000 0.00 0.00 31.88 2.24
4983 8232 3.329520 CCCAATCATCCCCCGATTAAGTA 59.670 47.826 0.00 0.00 31.88 2.24
4984 8233 4.324267 CCAATCATCCCCCGATTAAGTAC 58.676 47.826 0.00 0.00 31.88 2.73
5249 8596 8.932434 TGCTATAATGGCTGTATGGAAATTAA 57.068 30.769 0.00 0.00 0.00 1.40
5414 8792 4.663592 GGGGAATTGGGGATAGAACTAGAA 59.336 45.833 0.00 0.00 0.00 2.10
5418 8796 8.445588 GGGAATTGGGGATAGAACTAGAATTTA 58.554 37.037 0.00 0.00 0.00 1.40
5744 9132 3.068732 AGCATATCTGTGTCGTGCTACAT 59.931 43.478 0.00 0.00 43.69 2.29
5820 9292 3.742882 GCTATCACATCGATTGCTTGCTA 59.257 43.478 0.00 0.00 45.83 3.49
5842 9314 5.358298 AATCGTGAAGGTTTTAGTCTTGC 57.642 39.130 0.00 0.00 0.00 4.01
5879 9351 5.191727 TCATGTAGATGACCCCACAAAAT 57.808 39.130 0.00 0.00 33.40 1.82
5928 9401 5.352569 AGAAGAATGGAGTATTTTCTGTGCG 59.647 40.000 0.00 0.00 31.23 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 0.401356 TGGATCTGTTCAAGGCAGCA 59.599 50.000 0.00 0.00 34.21 4.41
49 50 2.094390 TCGACAAGAAACATACCCGGAG 60.094 50.000 0.73 0.00 0.00 4.63
50 51 1.894466 TCGACAAGAAACATACCCGGA 59.106 47.619 0.73 0.00 0.00 5.14
51 52 2.373540 TCGACAAGAAACATACCCGG 57.626 50.000 0.00 0.00 0.00 5.73
52 53 4.153475 ACAAATCGACAAGAAACATACCCG 59.847 41.667 0.00 0.00 0.00 5.28
53 54 5.622770 ACAAATCGACAAGAAACATACCC 57.377 39.130 0.00 0.00 0.00 3.69
54 55 6.581166 GGAAACAAATCGACAAGAAACATACC 59.419 38.462 0.00 0.00 0.00 2.73
55 56 7.136119 TGGAAACAAATCGACAAGAAACATAC 58.864 34.615 0.00 0.00 37.44 2.39
56 57 7.012894 ACTGGAAACAAATCGACAAGAAACATA 59.987 33.333 0.00 0.00 42.06 2.29
57 58 6.142818 TGGAAACAAATCGACAAGAAACAT 57.857 33.333 0.00 0.00 37.44 2.71
58 59 5.124776 ACTGGAAACAAATCGACAAGAAACA 59.875 36.000 0.00 0.00 42.06 2.83
59 60 5.578776 ACTGGAAACAAATCGACAAGAAAC 58.421 37.500 0.00 0.00 42.06 2.78
60 61 5.828299 ACTGGAAACAAATCGACAAGAAA 57.172 34.783 0.00 0.00 42.06 2.52
61 62 6.928979 TTACTGGAAACAAATCGACAAGAA 57.071 33.333 0.00 0.00 42.06 2.52
62 63 6.540914 ACTTTACTGGAAACAAATCGACAAGA 59.459 34.615 0.00 0.00 42.06 3.02
63 64 6.725246 ACTTTACTGGAAACAAATCGACAAG 58.275 36.000 0.00 0.00 42.06 3.16
64 65 6.687081 ACTTTACTGGAAACAAATCGACAA 57.313 33.333 0.00 0.00 42.06 3.18
65 66 6.073440 GCTACTTTACTGGAAACAAATCGACA 60.073 38.462 0.00 0.00 42.06 4.35
66 67 6.073440 TGCTACTTTACTGGAAACAAATCGAC 60.073 38.462 0.00 0.00 42.06 4.20
67 68 5.992829 TGCTACTTTACTGGAAACAAATCGA 59.007 36.000 0.00 0.00 42.06 3.59
68 69 6.236017 TGCTACTTTACTGGAAACAAATCG 57.764 37.500 0.00 0.00 42.06 3.34
69 70 7.062255 GCATTGCTACTTTACTGGAAACAAATC 59.938 37.037 0.16 0.00 42.06 2.17
70 71 6.868339 GCATTGCTACTTTACTGGAAACAAAT 59.132 34.615 0.16 0.00 42.06 2.32
71 72 6.040391 AGCATTGCTACTTTACTGGAAACAAA 59.960 34.615 10.00 0.00 37.12 2.83
72 73 5.534654 AGCATTGCTACTTTACTGGAAACAA 59.465 36.000 10.00 0.00 37.12 2.83
73 74 5.070001 AGCATTGCTACTTTACTGGAAACA 58.930 37.500 10.00 0.00 36.99 2.83
74 75 5.629079 AGCATTGCTACTTTACTGGAAAC 57.371 39.130 10.00 0.00 36.99 2.78
75 76 6.012658 CAAGCATTGCTACTTTACTGGAAA 57.987 37.500 12.39 0.00 40.39 3.13
76 77 5.627499 CAAGCATTGCTACTTTACTGGAA 57.373 39.130 12.39 0.00 40.39 3.53
91 92 6.818142 GCAATAACATTTTAGACCCAAGCATT 59.182 34.615 0.00 0.00 0.00 3.56
92 93 6.155049 AGCAATAACATTTTAGACCCAAGCAT 59.845 34.615 0.00 0.00 0.00 3.79
93 94 5.480073 AGCAATAACATTTTAGACCCAAGCA 59.520 36.000 0.00 0.00 0.00 3.91
94 95 5.965922 AGCAATAACATTTTAGACCCAAGC 58.034 37.500 0.00 0.00 0.00 4.01
95 96 7.830739 AGAAGCAATAACATTTTAGACCCAAG 58.169 34.615 0.00 0.00 0.00 3.61
96 97 7.093945 GGAGAAGCAATAACATTTTAGACCCAA 60.094 37.037 0.00 0.00 0.00 4.12
97 98 6.377146 GGAGAAGCAATAACATTTTAGACCCA 59.623 38.462 0.00 0.00 0.00 4.51
98 99 6.603599 AGGAGAAGCAATAACATTTTAGACCC 59.396 38.462 0.00 0.00 0.00 4.46
99 100 7.475840 CAGGAGAAGCAATAACATTTTAGACC 58.524 38.462 0.00 0.00 0.00 3.85
100 101 6.969473 GCAGGAGAAGCAATAACATTTTAGAC 59.031 38.462 0.00 0.00 0.00 2.59
101 102 6.886459 AGCAGGAGAAGCAATAACATTTTAGA 59.114 34.615 0.00 0.00 0.00 2.10
102 103 6.971184 CAGCAGGAGAAGCAATAACATTTTAG 59.029 38.462 0.00 0.00 0.00 1.85
103 104 6.625740 GCAGCAGGAGAAGCAATAACATTTTA 60.626 38.462 0.00 0.00 0.00 1.52
104 105 5.717119 CAGCAGGAGAAGCAATAACATTTT 58.283 37.500 0.00 0.00 0.00 1.82
105 106 4.381292 GCAGCAGGAGAAGCAATAACATTT 60.381 41.667 0.00 0.00 0.00 2.32
106 107 3.129988 GCAGCAGGAGAAGCAATAACATT 59.870 43.478 0.00 0.00 0.00 2.71
107 108 2.686915 GCAGCAGGAGAAGCAATAACAT 59.313 45.455 0.00 0.00 0.00 2.71
108 109 2.086869 GCAGCAGGAGAAGCAATAACA 58.913 47.619 0.00 0.00 0.00 2.41
109 110 2.363683 AGCAGCAGGAGAAGCAATAAC 58.636 47.619 0.00 0.00 0.00 1.89
110 111 2.751259 CAAGCAGCAGGAGAAGCAATAA 59.249 45.455 0.00 0.00 0.00 1.40
111 112 2.026915 TCAAGCAGCAGGAGAAGCAATA 60.027 45.455 0.00 0.00 0.00 1.90
112 113 1.174783 CAAGCAGCAGGAGAAGCAAT 58.825 50.000 0.00 0.00 0.00 3.56
113 114 0.109153 TCAAGCAGCAGGAGAAGCAA 59.891 50.000 0.00 0.00 0.00 3.91
114 115 0.604780 GTCAAGCAGCAGGAGAAGCA 60.605 55.000 0.00 0.00 0.00 3.91
115 116 1.633852 CGTCAAGCAGCAGGAGAAGC 61.634 60.000 0.00 0.00 0.00 3.86
116 117 0.320247 ACGTCAAGCAGCAGGAGAAG 60.320 55.000 0.00 0.00 0.00 2.85
117 118 0.106708 AACGTCAAGCAGCAGGAGAA 59.893 50.000 0.00 0.00 0.00 2.87
118 119 0.106708 AAACGTCAAGCAGCAGGAGA 59.893 50.000 0.00 0.00 0.00 3.71
119 120 0.514691 GAAACGTCAAGCAGCAGGAG 59.485 55.000 0.00 0.00 0.00 3.69
120 121 0.179059 TGAAACGTCAAGCAGCAGGA 60.179 50.000 0.00 0.00 0.00 3.86
121 122 0.877071 ATGAAACGTCAAGCAGCAGG 59.123 50.000 0.00 0.00 37.30 4.85
122 123 1.463034 CGATGAAACGTCAAGCAGCAG 60.463 52.381 0.00 0.00 37.30 4.24
123 124 0.512518 CGATGAAACGTCAAGCAGCA 59.487 50.000 0.00 0.00 37.30 4.41
124 125 0.790207 TCGATGAAACGTCAAGCAGC 59.210 50.000 0.00 0.00 37.30 5.25
125 126 3.729526 AATCGATGAAACGTCAAGCAG 57.270 42.857 0.00 0.00 37.30 4.24
126 127 3.809234 CAAATCGATGAAACGTCAAGCA 58.191 40.909 0.00 0.00 37.30 3.91
127 128 2.589841 GCAAATCGATGAAACGTCAAGC 59.410 45.455 0.00 0.00 37.30 4.01
128 129 2.834450 CGCAAATCGATGAAACGTCAAG 59.166 45.455 0.00 0.00 41.67 3.02
129 130 2.222213 ACGCAAATCGATGAAACGTCAA 59.778 40.909 0.00 0.00 41.67 3.18
130 131 1.795872 ACGCAAATCGATGAAACGTCA 59.204 42.857 0.00 0.00 41.67 4.35
131 132 2.503943 ACGCAAATCGATGAAACGTC 57.496 45.000 0.00 0.00 41.67 4.34
132 133 2.570169 CAACGCAAATCGATGAAACGT 58.430 42.857 0.00 4.38 42.63 3.99
133 134 1.904412 CCAACGCAAATCGATGAAACG 59.096 47.619 0.00 3.69 42.63 3.60
134 135 2.928694 ACCAACGCAAATCGATGAAAC 58.071 42.857 0.00 0.00 42.63 2.78
135 136 3.003793 TCAACCAACGCAAATCGATGAAA 59.996 39.130 0.00 0.00 42.63 2.69
136 137 2.550180 TCAACCAACGCAAATCGATGAA 59.450 40.909 0.00 0.00 42.63 2.57
137 138 2.147150 TCAACCAACGCAAATCGATGA 58.853 42.857 0.00 0.00 42.63 2.92
138 139 2.610219 TCAACCAACGCAAATCGATG 57.390 45.000 0.00 0.00 41.67 3.84
139 140 3.427503 GGATTCAACCAACGCAAATCGAT 60.428 43.478 0.00 0.00 41.67 3.59
140 141 2.095466 GGATTCAACCAACGCAAATCGA 60.095 45.455 0.00 0.00 41.67 3.59
141 142 2.250188 GGATTCAACCAACGCAAATCG 58.750 47.619 0.00 0.00 45.38 3.34
142 143 3.244976 CTGGATTCAACCAACGCAAATC 58.755 45.455 0.00 0.00 39.59 2.17
143 144 2.029110 CCTGGATTCAACCAACGCAAAT 60.029 45.455 0.00 0.00 39.59 2.32
144 145 1.339610 CCTGGATTCAACCAACGCAAA 59.660 47.619 0.00 0.00 39.59 3.68
145 146 0.958091 CCTGGATTCAACCAACGCAA 59.042 50.000 0.00 0.00 39.59 4.85
146 147 0.893270 CCCTGGATTCAACCAACGCA 60.893 55.000 0.00 0.00 39.59 5.24
147 148 0.893727 ACCCTGGATTCAACCAACGC 60.894 55.000 0.00 0.00 39.59 4.84
148 149 0.881118 CACCCTGGATTCAACCAACG 59.119 55.000 0.00 0.00 39.59 4.10
149 150 0.603065 GCACCCTGGATTCAACCAAC 59.397 55.000 0.00 0.00 39.59 3.77
150 151 0.482446 AGCACCCTGGATTCAACCAA 59.518 50.000 0.00 0.00 39.59 3.67
151 152 1.281867 CTAGCACCCTGGATTCAACCA 59.718 52.381 0.00 0.00 38.33 3.67
152 153 1.282157 ACTAGCACCCTGGATTCAACC 59.718 52.381 0.00 0.00 0.00 3.77
153 154 2.789409 ACTAGCACCCTGGATTCAAC 57.211 50.000 0.00 0.00 0.00 3.18
154 155 3.561313 GGAAACTAGCACCCTGGATTCAA 60.561 47.826 0.00 0.00 34.46 2.69
155 156 2.026262 GGAAACTAGCACCCTGGATTCA 60.026 50.000 0.00 0.00 34.46 2.57
156 157 2.026262 TGGAAACTAGCACCCTGGATTC 60.026 50.000 0.00 0.00 32.81 2.52
157 158 1.992557 TGGAAACTAGCACCCTGGATT 59.007 47.619 0.00 0.00 0.00 3.01
158 159 1.561542 CTGGAAACTAGCACCCTGGAT 59.438 52.381 0.00 0.00 0.00 3.41
159 160 0.984230 CTGGAAACTAGCACCCTGGA 59.016 55.000 0.00 0.00 0.00 3.86
160 161 0.693049 ACTGGAAACTAGCACCCTGG 59.307 55.000 0.00 0.00 0.00 4.45
161 162 1.347707 TCACTGGAAACTAGCACCCTG 59.652 52.381 0.00 0.00 0.00 4.45
162 163 1.729586 TCACTGGAAACTAGCACCCT 58.270 50.000 0.00 0.00 0.00 4.34
163 164 2.789409 ATCACTGGAAACTAGCACCC 57.211 50.000 0.00 0.00 0.00 4.61
164 165 5.880332 TGAATAATCACTGGAAACTAGCACC 59.120 40.000 0.00 0.00 0.00 5.01
165 166 6.818644 TCTGAATAATCACTGGAAACTAGCAC 59.181 38.462 0.00 0.00 0.00 4.40
166 167 6.946340 TCTGAATAATCACTGGAAACTAGCA 58.054 36.000 0.00 0.00 0.00 3.49
167 168 6.018343 GCTCTGAATAATCACTGGAAACTAGC 60.018 42.308 0.00 0.00 0.00 3.42
168 169 7.010923 GTGCTCTGAATAATCACTGGAAACTAG 59.989 40.741 0.00 0.00 0.00 2.57
169 170 6.818644 GTGCTCTGAATAATCACTGGAAACTA 59.181 38.462 0.00 0.00 0.00 2.24
170 171 5.645497 GTGCTCTGAATAATCACTGGAAACT 59.355 40.000 0.00 0.00 0.00 2.66
171 172 5.163713 GGTGCTCTGAATAATCACTGGAAAC 60.164 44.000 0.00 0.00 0.00 2.78
172 173 4.943705 GGTGCTCTGAATAATCACTGGAAA 59.056 41.667 0.00 0.00 0.00 3.13
173 174 4.019411 TGGTGCTCTGAATAATCACTGGAA 60.019 41.667 0.00 0.00 0.00 3.53
174 175 3.519107 TGGTGCTCTGAATAATCACTGGA 59.481 43.478 0.00 0.00 0.00 3.86
175 176 3.877559 TGGTGCTCTGAATAATCACTGG 58.122 45.455 0.00 0.00 0.00 4.00
176 177 4.261072 GCATGGTGCTCTGAATAATCACTG 60.261 45.833 0.00 0.00 40.96 3.66
177 178 3.881688 GCATGGTGCTCTGAATAATCACT 59.118 43.478 0.00 0.00 40.96 3.41
178 179 4.220533 GCATGGTGCTCTGAATAATCAC 57.779 45.455 0.00 0.00 40.96 3.06
191 192 0.950116 GCAGAGGAATAGCATGGTGC 59.050 55.000 7.89 0.00 45.46 5.01
192 193 2.492012 GAGCAGAGGAATAGCATGGTG 58.508 52.381 7.89 0.00 0.00 4.17
193 194 1.419387 GGAGCAGAGGAATAGCATGGT 59.581 52.381 1.62 1.62 0.00 3.55
194 195 1.698532 AGGAGCAGAGGAATAGCATGG 59.301 52.381 0.00 0.00 0.00 3.66
195 196 2.609984 CGAGGAGCAGAGGAATAGCATG 60.610 54.545 0.00 0.00 0.00 4.06
196 197 1.617850 CGAGGAGCAGAGGAATAGCAT 59.382 52.381 0.00 0.00 0.00 3.79
197 198 1.035923 CGAGGAGCAGAGGAATAGCA 58.964 55.000 0.00 0.00 0.00 3.49
198 199 1.000717 GACGAGGAGCAGAGGAATAGC 60.001 57.143 0.00 0.00 0.00 2.97
199 200 2.552315 GAGACGAGGAGCAGAGGAATAG 59.448 54.545 0.00 0.00 0.00 1.73
200 201 2.577700 GAGACGAGGAGCAGAGGAATA 58.422 52.381 0.00 0.00 0.00 1.75
201 202 1.398692 GAGACGAGGAGCAGAGGAAT 58.601 55.000 0.00 0.00 0.00 3.01
202 203 0.681564 GGAGACGAGGAGCAGAGGAA 60.682 60.000 0.00 0.00 0.00 3.36
203 204 1.077357 GGAGACGAGGAGCAGAGGA 60.077 63.158 0.00 0.00 0.00 3.71
204 205 3.520402 GGAGACGAGGAGCAGAGG 58.480 66.667 0.00 0.00 0.00 3.69
227 228 0.755686 GCAATGGAGGAGACCGAGAT 59.244 55.000 0.00 0.00 0.00 2.75
391 403 7.010923 GTGCTCTGAATAATCACTGGAAACTAG 59.989 40.741 0.00 0.00 0.00 2.57
392 404 6.818644 GTGCTCTGAATAATCACTGGAAACTA 59.181 38.462 0.00 0.00 0.00 2.24
515 589 0.387202 CCGCTTCACTCGATCTGGAT 59.613 55.000 0.00 0.00 0.00 3.41
577 723 4.819761 GCGTCGGATGGCAGAGCA 62.820 66.667 0.00 0.00 0.00 4.26
578 724 4.521062 AGCGTCGGATGGCAGAGC 62.521 66.667 0.00 0.00 0.00 4.09
579 725 2.584418 CAGCGTCGGATGGCAGAG 60.584 66.667 0.00 0.00 0.00 3.35
580 726 3.068064 TCAGCGTCGGATGGCAGA 61.068 61.111 0.00 0.00 0.00 4.26
581 727 2.887568 GTCAGCGTCGGATGGCAG 60.888 66.667 0.00 0.00 33.50 4.85
582 728 4.794439 CGTCAGCGTCGGATGGCA 62.794 66.667 0.00 0.00 32.63 4.92
752 1257 3.851458 TTCTATGCATGGTGCTCTGAT 57.149 42.857 10.16 0.00 45.31 2.90
827 2320 1.278637 CAGAACACAAACGGCCGAC 59.721 57.895 35.90 11.62 0.00 4.79
1015 2882 0.613853 ATCAGCTTGGCAATGGCACT 60.614 50.000 9.62 0.92 43.71 4.40
1221 3088 1.816224 TCAACGACATCCTCGATGACA 59.184 47.619 8.57 0.00 46.03 3.58
1227 3094 6.865874 AGGAACTTGTCAACGACATCCTCG 62.866 50.000 10.58 0.00 42.43 4.63
1282 3158 2.493035 CCCCTTGAATTTGTTTGTGGC 58.507 47.619 0.00 0.00 0.00 5.01
1525 3407 0.540923 AGCAACCTCATGAGCTCCTC 59.459 55.000 17.76 4.86 30.05 3.71
1743 3646 2.432628 GACTGAGGGTTGCCGTCG 60.433 66.667 3.84 0.00 40.83 5.12
1744 3647 1.374758 CTGACTGAGGGTTGCCGTC 60.375 63.158 1.33 1.33 38.71 4.79
1745 3648 1.194781 ATCTGACTGAGGGTTGCCGT 61.195 55.000 0.00 0.00 0.00 5.68
1746 3649 0.460987 GATCTGACTGAGGGTTGCCG 60.461 60.000 0.00 0.00 0.00 5.69
1747 3650 0.908198 AGATCTGACTGAGGGTTGCC 59.092 55.000 0.00 0.00 0.00 4.52
1748 3651 2.777832 AAGATCTGACTGAGGGTTGC 57.222 50.000 0.00 0.00 0.00 4.17
1758 3661 7.856145 AACATCCAGTATTGAAAGATCTGAC 57.144 36.000 0.00 0.00 0.00 3.51
1807 3710 4.026356 ACCTCTTGTTCTCCAGGAATTG 57.974 45.455 0.00 0.00 36.24 2.32
1865 3774 8.630054 TGTACAACTAGCATAGGAAACAAAAT 57.370 30.769 0.00 0.00 44.97 1.82
1866 3775 8.453238 TTGTACAACTAGCATAGGAAACAAAA 57.547 30.769 3.59 0.00 44.97 2.44
1921 3833 0.034756 CCCTTCCGTGTGTGACATCA 59.965 55.000 0.00 0.00 0.00 3.07
1970 3928 3.940303 GCAAACTGCATATGTCGGTAAG 58.060 45.455 4.29 5.72 44.26 2.34
2014 3972 9.713684 ATTATTTTGACAATGGAGGGAAGAATA 57.286 29.630 0.00 0.00 0.00 1.75
2015 3973 8.613922 ATTATTTTGACAATGGAGGGAAGAAT 57.386 30.769 0.00 0.00 0.00 2.40
2017 3975 9.189156 CTTATTATTTTGACAATGGAGGGAAGA 57.811 33.333 0.00 0.00 0.00 2.87
2020 3978 6.894654 TGCTTATTATTTTGACAATGGAGGGA 59.105 34.615 0.00 0.00 0.00 4.20
2021 3979 7.111247 TGCTTATTATTTTGACAATGGAGGG 57.889 36.000 0.00 0.00 0.00 4.30
2022 3980 8.253113 ACTTGCTTATTATTTTGACAATGGAGG 58.747 33.333 0.00 0.00 0.00 4.30
2055 4051 9.519191 AGCCTATATATTGTAATGAATGCAACA 57.481 29.630 0.00 0.00 36.41 3.33
2129 4652 5.664294 AAGTTCAGCCATTGCAATGAATA 57.336 34.783 35.47 17.60 41.13 1.75
2153 4677 1.329906 GATTGCTTCGACTGATGCCAG 59.670 52.381 0.00 0.00 42.86 4.85
2161 4685 3.265791 GTTCAGATGGATTGCTTCGACT 58.734 45.455 0.00 0.00 0.00 4.18
2165 4689 7.315142 TGTAAAATGTTCAGATGGATTGCTTC 58.685 34.615 0.00 0.00 0.00 3.86
2169 4693 9.642327 TGAAATGTAAAATGTTCAGATGGATTG 57.358 29.630 0.00 0.00 0.00 2.67
2179 4703 7.920682 ACTCACTTGGTGAAATGTAAAATGTTC 59.079 33.333 2.04 0.00 42.26 3.18
2209 4751 8.561212 TGGTGTATTATTTGTTACAGTTGTCAC 58.439 33.333 0.00 0.00 0.00 3.67
2298 4923 2.068831 TGGGTGGGGTAAGGAGAAAT 57.931 50.000 0.00 0.00 0.00 2.17
2357 4988 0.185901 AGGAACTTTCAAGGGCAGCA 59.814 50.000 0.00 0.00 27.25 4.41
2361 4992 9.582431 GTAAATATTTTAGGAACTTTCAAGGGC 57.418 33.333 5.91 0.00 41.75 5.19
2400 5031 9.260002 GACAATTTAACTTGTTTGGTCATCAAT 57.740 29.630 11.94 0.00 39.40 2.57
2401 5032 8.474025 AGACAATTTAACTTGTTTGGTCATCAA 58.526 29.630 11.94 0.00 39.40 2.57
2402 5033 8.006298 AGACAATTTAACTTGTTTGGTCATCA 57.994 30.769 11.94 0.00 39.40 3.07
2403 5034 8.352942 AGAGACAATTTAACTTGTTTGGTCATC 58.647 33.333 11.94 0.00 39.40 2.92
2406 5037 8.188139 TGAAGAGACAATTTAACTTGTTTGGTC 58.812 33.333 11.94 8.70 39.40 4.02
2407 5038 8.062065 TGAAGAGACAATTTAACTTGTTTGGT 57.938 30.769 11.94 0.50 39.40 3.67
2408 5039 9.533253 AATGAAGAGACAATTTAACTTGTTTGG 57.467 29.630 11.94 0.00 39.40 3.28
2513 5280 7.277539 CAGCTAATGAACTTCTTGGAGACTTAG 59.722 40.741 0.00 0.00 0.00 2.18
2515 5287 5.936956 CAGCTAATGAACTTCTTGGAGACTT 59.063 40.000 0.00 0.00 0.00 3.01
2543 5315 8.181904 ACAGATTGGCCCACTAATTTAATATG 57.818 34.615 0.00 0.00 0.00 1.78
2554 5326 2.785743 TGGTACAGATTGGCCCACT 58.214 52.632 0.00 0.00 0.00 4.00
2576 5394 7.369551 TGGTCGGGTAGATATATCAAAAAGT 57.630 36.000 15.08 0.00 0.00 2.66
2618 5521 7.976826 TCAATGACCATACGTAAAATACAACC 58.023 34.615 0.00 0.00 0.00 3.77
2619 5522 9.646336 GATCAATGACCATACGTAAAATACAAC 57.354 33.333 0.00 0.00 0.00 3.32
2657 5562 8.567285 AGATTCTAGGGAGTAAAACACAAATG 57.433 34.615 0.00 0.00 0.00 2.32
2939 5899 4.572985 TGGAGAAAGCAAAGTTGATGTG 57.427 40.909 0.00 0.00 0.00 3.21
2983 5943 2.747396 TGCGGGTTGTCGTAATTAGT 57.253 45.000 0.00 0.00 0.00 2.24
2989 5949 2.830264 GACAATGCGGGTTGTCGTA 58.170 52.632 11.88 0.00 45.76 3.43
3033 5993 4.495690 TGATAAACCGAATCATGGTCCA 57.504 40.909 0.00 0.00 39.29 4.02
3038 5998 6.697019 GGTTCCATTTGATAAACCGAATCATG 59.303 38.462 0.00 0.00 33.52 3.07
3153 6113 6.039047 CCCACCACATTTCTTCAGAATATCTG 59.961 42.308 0.88 0.88 45.59 2.90
3543 6507 1.261480 AGCATATACCTGGCCGAGAG 58.739 55.000 0.00 0.00 0.00 3.20
3547 6511 1.237285 GGCAAGCATATACCTGGCCG 61.237 60.000 0.00 0.00 39.48 6.13
3652 6616 9.642312 CGAATATTACTTTGTGAAGACATGATG 57.358 33.333 0.00 0.00 36.69 3.07
3653 6617 9.383519 ACGAATATTACTTTGTGAAGACATGAT 57.616 29.630 0.00 0.00 36.69 2.45
3654 6618 8.771920 ACGAATATTACTTTGTGAAGACATGA 57.228 30.769 0.00 0.00 36.69 3.07
3674 6641 4.238761 TCTGAAGAGACAAACGACGAAT 57.761 40.909 0.00 0.00 0.00 3.34
3709 6676 0.034767 TGAGAGGCTTGGCTTGATGG 60.035 55.000 0.00 0.00 0.00 3.51
3742 6709 5.106555 GGTAATTGACCTCACTTGTGACATG 60.107 44.000 0.00 0.00 45.89 3.21
3946 6916 1.120530 GGTTTCCTATCTCAGCCGGA 58.879 55.000 5.05 0.00 0.00 5.14
4001 6971 4.390297 GGACGGCAATTCATCTAGCTTATC 59.610 45.833 0.00 0.00 0.00 1.75
4205 7181 6.256053 ACAAATCCAAACTACCATCCTTGAT 58.744 36.000 0.00 0.00 0.00 2.57
4380 7356 0.464036 TGCATAGAGTTGGGTAGGCG 59.536 55.000 0.00 0.00 0.00 5.52
4386 7362 1.741706 CTTGCAGTGCATAGAGTTGGG 59.258 52.381 20.50 0.00 38.76 4.12
4395 7371 0.625316 TATCCACCCTTGCAGTGCAT 59.375 50.000 20.50 0.00 38.76 3.96
4457 7433 5.227569 TGCACTTCCTTCACTGAATAGAA 57.772 39.130 0.00 0.00 0.00 2.10
4576 7552 0.880278 CCATACAGCGGAACCCATCG 60.880 60.000 0.00 0.00 0.00 3.84
4604 7580 3.411446 CTGCTGACCCACAATTCAAGTA 58.589 45.455 0.00 0.00 0.00 2.24
4764 7740 3.694072 ACAATACATCCAAACCATGACCG 59.306 43.478 0.00 0.00 0.00 4.79
4931 8180 1.201647 GAGCGTGAGTAGTTAGGTGCA 59.798 52.381 0.00 0.00 0.00 4.57
4932 8181 1.201647 TGAGCGTGAGTAGTTAGGTGC 59.798 52.381 0.00 0.00 0.00 5.01
4933 8182 3.057456 AGTTGAGCGTGAGTAGTTAGGTG 60.057 47.826 0.00 0.00 0.00 4.00
4934 8183 3.155501 AGTTGAGCGTGAGTAGTTAGGT 58.844 45.455 0.00 0.00 0.00 3.08
4935 8184 3.427773 GGAGTTGAGCGTGAGTAGTTAGG 60.428 52.174 0.00 0.00 0.00 2.69
4937 8186 2.490903 GGGAGTTGAGCGTGAGTAGTTA 59.509 50.000 0.00 0.00 0.00 2.24
4938 8187 1.272769 GGGAGTTGAGCGTGAGTAGTT 59.727 52.381 0.00 0.00 0.00 2.24
4939 8188 0.889306 GGGAGTTGAGCGTGAGTAGT 59.111 55.000 0.00 0.00 0.00 2.73
4941 8190 1.476891 GATGGGAGTTGAGCGTGAGTA 59.523 52.381 0.00 0.00 0.00 2.59
4942 8191 0.247736 GATGGGAGTTGAGCGTGAGT 59.752 55.000 0.00 0.00 0.00 3.41
4943 8192 0.460987 GGATGGGAGTTGAGCGTGAG 60.461 60.000 0.00 0.00 0.00 3.51
4944 8193 1.596934 GGATGGGAGTTGAGCGTGA 59.403 57.895 0.00 0.00 0.00 4.35
4945 8194 1.450312 GGGATGGGAGTTGAGCGTG 60.450 63.158 0.00 0.00 0.00 5.34
4946 8195 1.488705 TTGGGATGGGAGTTGAGCGT 61.489 55.000 0.00 0.00 0.00 5.07
4947 8196 0.107017 ATTGGGATGGGAGTTGAGCG 60.107 55.000 0.00 0.00 0.00 5.03
5390 8768 3.166636 AGTTCTATCCCCAATTCCCCT 57.833 47.619 0.00 0.00 0.00 4.79
5820 9292 4.084013 CGCAAGACTAAAACCTTCACGATT 60.084 41.667 0.00 0.00 43.02 3.34
5842 9314 5.052481 TCTACATGAATCTTGCTCATTCCG 58.948 41.667 0.00 0.00 30.99 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.