Multiple sequence alignment - TraesCS1A01G026000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G026000 chr1A 100.000 2915 0 0 1 2915 12370419 12373333 0.000000e+00 5384.0
1 TraesCS1A01G026000 chr1A 93.284 134 4 2 279 407 12159815 12159682 2.960000e-45 193.0
2 TraesCS1A01G026000 chr1A 80.287 279 35 15 169 435 109579647 109579377 2.960000e-45 193.0
3 TraesCS1A01G026000 chr1B 90.036 2248 131 46 725 2915 15743975 15741764 0.000000e+00 2824.0
4 TraesCS1A01G026000 chr1B 85.806 155 22 0 405 559 643121240 643121394 6.460000e-37 165.0
5 TraesCS1A01G026000 chr1B 86.290 124 14 1 164 287 666933534 666933654 6.550000e-27 132.0
6 TraesCS1A01G026000 chr1D 94.373 1564 60 17 997 2537 10722694 10724252 0.000000e+00 2375.0
7 TraesCS1A01G026000 chr1D 92.384 302 13 4 614 905 10722345 10722646 3.470000e-114 422.0
8 TraesCS1A01G026000 chr1D 84.239 368 36 11 2563 2909 10724369 10724735 3.600000e-89 339.0
9 TraesCS1A01G026000 chr1D 94.643 56 2 1 36 91 10722103 10722157 5.180000e-13 86.1
10 TraesCS1A01G026000 chr2B 88.930 271 24 3 169 435 118834035 118833767 2.170000e-86 329.0
11 TraesCS1A01G026000 chr2B 87.931 116 11 1 167 282 17867973 17867861 1.820000e-27 134.0
12 TraesCS1A01G026000 chr2B 86.441 118 13 2 169 286 372772539 372772425 3.050000e-25 126.0
13 TraesCS1A01G026000 chr7A 92.405 158 12 0 403 560 105170251 105170408 2.920000e-55 226.0
14 TraesCS1A01G026000 chr7A 93.233 133 5 1 276 404 501074807 501074675 2.960000e-45 193.0
15 TraesCS1A01G026000 chr7A 91.034 145 8 2 262 401 351612736 351612880 1.070000e-44 191.0
16 TraesCS1A01G026000 chr7A 95.536 112 4 1 434 544 645027114 645027225 8.300000e-41 178.0
17 TraesCS1A01G026000 chr3A 92.593 135 6 1 271 401 198207440 198207574 1.070000e-44 191.0
18 TraesCS1A01G026000 chr3A 92.593 135 5 2 271 401 681617759 681617892 3.830000e-44 189.0
19 TraesCS1A01G026000 chr3A 87.333 150 19 0 410 559 661926796 661926945 3.860000e-39 172.0
20 TraesCS1A01G026000 chr3A 85.350 157 21 1 403 559 672556582 672556736 8.360000e-36 161.0
21 TraesCS1A01G026000 chr5A 91.429 140 8 3 272 407 556560798 556560659 3.830000e-44 189.0
22 TraesCS1A01G026000 chr5A 89.474 152 9 4 259 405 154345681 154345532 4.960000e-43 185.0
23 TraesCS1A01G026000 chr5A 93.162 117 8 0 427 543 140894501 140894617 3.860000e-39 172.0
24 TraesCS1A01G026000 chr5A 89.683 126 13 0 409 534 170089611 170089486 8.360000e-36 161.0
25 TraesCS1A01G026000 chr6B 95.536 112 5 0 430 541 705508976 705508865 2.310000e-41 180.0
26 TraesCS1A01G026000 chr6B 84.553 123 15 2 161 282 192094263 192094144 5.100000e-23 119.0
27 TraesCS1A01G026000 chr6A 94.595 111 4 1 424 534 564282271 564282379 1.390000e-38 171.0
28 TraesCS1A01G026000 chr7B 88.793 116 10 1 168 283 677889395 677889283 3.920000e-29 139.0
29 TraesCS1A01G026000 chr7B 88.889 108 9 1 169 276 597462313 597462417 2.360000e-26 130.0
30 TraesCS1A01G026000 chr4B 88.696 115 10 1 169 283 344463298 344463409 1.410000e-28 137.0
31 TraesCS1A01G026000 chr4D 86.555 119 13 1 169 287 1244050 1243935 8.480000e-26 128.0
32 TraesCS1A01G026000 chr5B 100.000 33 0 0 403 435 660860061 660860029 8.720000e-06 62.1
33 TraesCS1A01G026000 chr2D 100.000 32 0 0 404 435 354322492 354322461 3.140000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G026000 chr1A 12370419 12373333 2914 False 5384.000 5384 100.00000 1 2915 1 chr1A.!!$F1 2914
1 TraesCS1A01G026000 chr1B 15741764 15743975 2211 True 2824.000 2824 90.03600 725 2915 1 chr1B.!!$R1 2190
2 TraesCS1A01G026000 chr1D 10722103 10724735 2632 False 805.525 2375 91.40975 36 2909 4 chr1D.!!$F1 2873

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
297 298 0.033796 ATGTACTCCCTCCGTTCCGA 60.034 55.0 0.0 0.0 0.0 4.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2285 2404 0.107831 GCTACACCACACCACTGGAA 59.892 55.0 0.71 0.0 35.04 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.619233 AGAAACCCCCAAACCAGC 57.381 55.556 0.00 0.00 0.00 4.85
18 19 1.938327 AGAAACCCCCAAACCAGCT 59.062 52.632 0.00 0.00 0.00 4.24
19 20 0.469892 AGAAACCCCCAAACCAGCTG 60.470 55.000 6.78 6.78 0.00 4.24
20 21 2.099652 GAAACCCCCAAACCAGCTGC 62.100 60.000 8.66 0.00 0.00 5.25
21 22 2.887738 AAACCCCCAAACCAGCTGCA 62.888 55.000 8.66 0.00 0.00 4.41
22 23 2.284112 CCCCCAAACCAGCTGCAT 60.284 61.111 8.66 0.00 0.00 3.96
23 24 2.652095 CCCCCAAACCAGCTGCATG 61.652 63.158 8.66 6.42 0.00 4.06
24 25 2.652095 CCCCAAACCAGCTGCATGG 61.652 63.158 18.60 18.60 46.47 3.66
25 26 1.607178 CCCAAACCAGCTGCATGGA 60.607 57.895 24.20 0.00 43.57 3.41
26 27 0.974010 CCCAAACCAGCTGCATGGAT 60.974 55.000 24.20 9.32 43.57 3.41
27 28 0.458669 CCAAACCAGCTGCATGGATC 59.541 55.000 20.10 0.00 43.57 3.36
28 29 0.099968 CAAACCAGCTGCATGGATCG 59.900 55.000 20.14 0.00 43.57 3.69
29 30 1.033746 AAACCAGCTGCATGGATCGG 61.034 55.000 20.14 0.00 43.57 4.18
30 31 2.191375 CCAGCTGCATGGATCGGT 59.809 61.111 8.66 0.00 43.57 4.69
31 32 2.184830 CCAGCTGCATGGATCGGTG 61.185 63.158 8.66 0.00 43.57 4.94
32 33 2.515523 AGCTGCATGGATCGGTGC 60.516 61.111 12.51 12.51 41.61 5.01
33 34 3.589881 GCTGCATGGATCGGTGCC 61.590 66.667 15.65 1.37 40.56 5.01
34 35 2.124612 CTGCATGGATCGGTGCCA 60.125 61.111 15.65 0.00 40.56 4.92
53 54 3.366374 GCCAGCCAGAAGATACAAACAAC 60.366 47.826 0.00 0.00 0.00 3.32
55 56 4.320494 CCAGCCAGAAGATACAAACAACAC 60.320 45.833 0.00 0.00 0.00 3.32
87 88 5.473504 ACATCAGATTTGTCCCAAAGTACAC 59.526 40.000 0.00 0.00 0.00 2.90
88 89 5.304686 TCAGATTTGTCCCAAAGTACACT 57.695 39.130 0.00 0.00 0.00 3.55
90 91 6.833041 TCAGATTTGTCCCAAAGTACACTAA 58.167 36.000 0.00 0.00 0.00 2.24
91 92 7.458397 TCAGATTTGTCCCAAAGTACACTAAT 58.542 34.615 0.00 0.00 0.00 1.73
92 93 8.598916 TCAGATTTGTCCCAAAGTACACTAATA 58.401 33.333 0.00 0.00 0.00 0.98
93 94 9.396022 CAGATTTGTCCCAAAGTACACTAATAT 57.604 33.333 0.00 0.00 0.00 1.28
94 95 9.975218 AGATTTGTCCCAAAGTACACTAATATT 57.025 29.630 0.00 0.00 0.00 1.28
118 119 5.904362 ATTGGAACTTTGGAAGATACTGC 57.096 39.130 0.00 0.00 0.00 4.40
119 120 4.365514 TGGAACTTTGGAAGATACTGCA 57.634 40.909 0.00 0.00 0.00 4.41
120 121 4.072131 TGGAACTTTGGAAGATACTGCAC 58.928 43.478 0.00 0.00 0.00 4.57
121 122 4.202461 TGGAACTTTGGAAGATACTGCACT 60.202 41.667 0.00 0.00 0.00 4.40
122 123 5.012664 TGGAACTTTGGAAGATACTGCACTA 59.987 40.000 0.00 0.00 0.00 2.74
123 124 5.582665 GGAACTTTGGAAGATACTGCACTAG 59.417 44.000 0.00 0.00 0.00 2.57
124 125 5.746990 ACTTTGGAAGATACTGCACTAGT 57.253 39.130 0.00 0.00 43.56 2.57
125 126 6.852420 ACTTTGGAAGATACTGCACTAGTA 57.148 37.500 0.00 0.00 45.50 1.82
126 127 6.631962 ACTTTGGAAGATACTGCACTAGTAC 58.368 40.000 0.00 0.00 44.30 2.73
127 128 6.210784 ACTTTGGAAGATACTGCACTAGTACA 59.789 38.462 0.00 0.00 44.30 2.90
128 129 6.791867 TTGGAAGATACTGCACTAGTACAT 57.208 37.500 0.00 0.00 44.30 2.29
139 140 6.553476 ACTGCACTAGTACATAATGGTCCATA 59.447 38.462 4.33 0.00 38.04 2.74
141 142 6.780522 TGCACTAGTACATAATGGTCCATAGA 59.219 38.462 4.33 0.00 0.00 1.98
142 143 7.454694 TGCACTAGTACATAATGGTCCATAGAT 59.545 37.037 4.33 0.00 0.00 1.98
143 144 7.761704 GCACTAGTACATAATGGTCCATAGATG 59.238 40.741 18.81 18.81 0.00 2.90
144 145 7.761704 CACTAGTACATAATGGTCCATAGATGC 59.238 40.741 19.76 9.73 0.00 3.91
145 146 6.686484 AGTACATAATGGTCCATAGATGCA 57.314 37.500 19.76 9.77 0.00 3.96
146 147 6.705302 AGTACATAATGGTCCATAGATGCAG 58.295 40.000 19.76 5.24 0.00 4.41
147 148 4.330250 ACATAATGGTCCATAGATGCAGC 58.670 43.478 19.76 0.00 0.00 5.25
171 172 2.759191 CATGCACGCATGTATCCTACT 58.241 47.619 21.25 0.00 46.20 2.57
173 174 1.068588 TGCACGCATGTATCCTACTCC 59.931 52.381 0.00 0.00 0.00 3.85
174 175 1.605712 GCACGCATGTATCCTACTCCC 60.606 57.143 0.00 0.00 0.00 4.30
175 176 1.964223 CACGCATGTATCCTACTCCCT 59.036 52.381 0.00 0.00 0.00 4.20
176 177 2.029828 CACGCATGTATCCTACTCCCTC 60.030 54.545 0.00 0.00 0.00 4.30
179 180 3.177228 GCATGTATCCTACTCCCTCCAT 58.823 50.000 0.00 0.00 0.00 3.41
181 182 4.323104 GCATGTATCCTACTCCCTCCATTC 60.323 50.000 0.00 0.00 0.00 2.67
182 183 3.858135 TGTATCCTACTCCCTCCATTCC 58.142 50.000 0.00 0.00 0.00 3.01
185 186 4.852991 ATCCTACTCCCTCCATTCCTAA 57.147 45.455 0.00 0.00 0.00 2.69
186 187 4.637288 TCCTACTCCCTCCATTCCTAAA 57.363 45.455 0.00 0.00 0.00 1.85
187 188 5.171541 TCCTACTCCCTCCATTCCTAAAT 57.828 43.478 0.00 0.00 0.00 1.40
188 189 6.303427 TCCTACTCCCTCCATTCCTAAATA 57.697 41.667 0.00 0.00 0.00 1.40
189 190 6.886637 TCCTACTCCCTCCATTCCTAAATAT 58.113 40.000 0.00 0.00 0.00 1.28
191 192 8.470109 TCCTACTCCCTCCATTCCTAAATATAA 58.530 37.037 0.00 0.00 0.00 0.98
192 193 8.763601 CCTACTCCCTCCATTCCTAAATATAAG 58.236 40.741 0.00 0.00 0.00 1.73
193 194 9.327731 CTACTCCCTCCATTCCTAAATATAAGT 57.672 37.037 0.00 0.00 0.00 2.24
194 195 8.582891 ACTCCCTCCATTCCTAAATATAAGTT 57.417 34.615 0.00 0.00 0.00 2.66
196 197 9.868160 CTCCCTCCATTCCTAAATATAAGTTTT 57.132 33.333 0.00 0.00 0.00 2.43
236 237 6.839124 TGGACTACTCCATACGAAGTAAAA 57.161 37.500 0.00 0.00 42.15 1.52
237 238 7.414222 TGGACTACTCCATACGAAGTAAAAT 57.586 36.000 0.00 0.00 42.15 1.82
238 239 7.262772 TGGACTACTCCATACGAAGTAAAATG 58.737 38.462 0.00 0.00 42.15 2.32
239 240 7.123098 TGGACTACTCCATACGAAGTAAAATGA 59.877 37.037 0.00 0.00 42.15 2.57
251 252 8.467402 ACGAAGTAAAATGAGTGAATCTACAG 57.533 34.615 0.00 0.00 41.94 2.74
252 253 8.088981 ACGAAGTAAAATGAGTGAATCTACAGT 58.911 33.333 0.00 0.00 41.94 3.55
253 254 8.926710 CGAAGTAAAATGAGTGAATCTACAGTT 58.073 33.333 0.00 0.00 0.00 3.16
291 292 3.165875 ACATCCATATGTACTCCCTCCG 58.834 50.000 1.24 0.00 44.66 4.63
292 293 3.165875 CATCCATATGTACTCCCTCCGT 58.834 50.000 1.24 0.00 0.00 4.69
293 294 3.323774 TCCATATGTACTCCCTCCGTT 57.676 47.619 1.24 0.00 0.00 4.44
294 295 3.228453 TCCATATGTACTCCCTCCGTTC 58.772 50.000 1.24 0.00 0.00 3.95
295 296 2.299297 CCATATGTACTCCCTCCGTTCC 59.701 54.545 1.24 0.00 0.00 3.62
296 297 1.683943 TATGTACTCCCTCCGTTCCG 58.316 55.000 0.00 0.00 0.00 4.30
297 298 0.033796 ATGTACTCCCTCCGTTCCGA 60.034 55.000 0.00 0.00 0.00 4.55
298 299 0.251297 TGTACTCCCTCCGTTCCGAA 60.251 55.000 0.00 0.00 0.00 4.30
299 300 1.109609 GTACTCCCTCCGTTCCGAAT 58.890 55.000 0.00 0.00 0.00 3.34
300 301 1.479730 GTACTCCCTCCGTTCCGAATT 59.520 52.381 0.00 0.00 0.00 2.17
301 302 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
302 303 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
303 304 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
304 305 2.167900 CTCCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
305 306 2.093869 TCCCTCCGTTCCGAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
306 307 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
307 308 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
308 309 3.368116 CCTCCGTTCCGAATTACTTGTCT 60.368 47.826 0.00 0.00 0.00 3.41
309 310 4.243270 CTCCGTTCCGAATTACTTGTCTT 58.757 43.478 0.00 0.00 0.00 3.01
310 311 5.389859 TCCGTTCCGAATTACTTGTCTTA 57.610 39.130 0.00 0.00 0.00 2.10
311 312 5.404946 TCCGTTCCGAATTACTTGTCTTAG 58.595 41.667 0.00 0.00 0.00 2.18
312 313 5.183713 TCCGTTCCGAATTACTTGTCTTAGA 59.816 40.000 0.00 0.00 0.00 2.10
313 314 6.040878 CCGTTCCGAATTACTTGTCTTAGAT 58.959 40.000 0.00 0.00 0.00 1.98
314 315 6.534079 CCGTTCCGAATTACTTGTCTTAGATT 59.466 38.462 0.00 0.00 0.00 2.40
315 316 7.064253 CCGTTCCGAATTACTTGTCTTAGATTT 59.936 37.037 0.00 0.00 0.00 2.17
316 317 7.898309 CGTTCCGAATTACTTGTCTTAGATTTG 59.102 37.037 0.00 0.00 0.00 2.32
317 318 8.718734 GTTCCGAATTACTTGTCTTAGATTTGT 58.281 33.333 0.00 0.00 0.00 2.83
318 319 8.475331 TCCGAATTACTTGTCTTAGATTTGTC 57.525 34.615 0.00 0.00 0.00 3.18
319 320 8.311836 TCCGAATTACTTGTCTTAGATTTGTCT 58.688 33.333 0.00 0.00 0.00 3.41
320 321 9.582431 CCGAATTACTTGTCTTAGATTTGTCTA 57.418 33.333 0.00 0.00 0.00 2.59
327 328 8.407064 ACTTGTCTTAGATTTGTCTAGATACGG 58.593 37.037 0.00 0.00 0.00 4.02
328 329 8.515695 TTGTCTTAGATTTGTCTAGATACGGA 57.484 34.615 0.00 0.00 0.00 4.69
329 330 8.155821 TGTCTTAGATTTGTCTAGATACGGAG 57.844 38.462 0.00 0.00 0.00 4.63
330 331 7.991460 TGTCTTAGATTTGTCTAGATACGGAGA 59.009 37.037 0.00 0.00 0.00 3.71
331 332 9.005777 GTCTTAGATTTGTCTAGATACGGAGAT 57.994 37.037 0.00 0.00 0.00 2.75
345 346 8.865420 AGATACGGAGATATCTAGCACTAAAA 57.135 34.615 4.89 0.00 39.63 1.52
346 347 9.469097 AGATACGGAGATATCTAGCACTAAAAT 57.531 33.333 4.89 0.00 39.63 1.82
347 348 9.509855 GATACGGAGATATCTAGCACTAAAATG 57.490 37.037 4.89 0.00 0.00 2.32
348 349 7.526142 ACGGAGATATCTAGCACTAAAATGA 57.474 36.000 4.89 0.00 0.00 2.57
349 350 7.598278 ACGGAGATATCTAGCACTAAAATGAG 58.402 38.462 4.89 0.00 0.00 2.90
350 351 7.231722 ACGGAGATATCTAGCACTAAAATGAGT 59.768 37.037 4.89 0.00 0.00 3.41
351 352 7.753132 CGGAGATATCTAGCACTAAAATGAGTC 59.247 40.741 4.89 0.00 0.00 3.36
352 353 8.802267 GGAGATATCTAGCACTAAAATGAGTCT 58.198 37.037 4.89 0.00 0.00 3.24
358 359 8.172352 TCTAGCACTAAAATGAGTCTAGATCC 57.828 38.462 0.00 0.00 34.65 3.36
359 360 5.837437 AGCACTAAAATGAGTCTAGATCCG 58.163 41.667 0.00 0.00 0.00 4.18
360 361 5.361285 AGCACTAAAATGAGTCTAGATCCGT 59.639 40.000 0.00 0.00 0.00 4.69
361 362 6.546403 AGCACTAAAATGAGTCTAGATCCGTA 59.454 38.462 0.00 0.00 0.00 4.02
362 363 7.231722 AGCACTAAAATGAGTCTAGATCCGTAT 59.768 37.037 0.00 0.00 0.00 3.06
363 364 7.539366 GCACTAAAATGAGTCTAGATCCGTATC 59.461 40.741 0.00 0.00 0.00 2.24
364 365 8.788806 CACTAAAATGAGTCTAGATCCGTATCT 58.211 37.037 0.00 0.00 44.80 1.98
378 379 8.239038 AGATCCGTATCTAGACAAATTCAAGA 57.761 34.615 0.00 0.00 40.82 3.02
379 380 8.138712 AGATCCGTATCTAGACAAATTCAAGAC 58.861 37.037 0.00 0.00 40.82 3.01
380 381 7.165460 TCCGTATCTAGACAAATTCAAGACA 57.835 36.000 0.00 0.00 0.00 3.41
381 382 7.608153 TCCGTATCTAGACAAATTCAAGACAA 58.392 34.615 0.00 0.00 0.00 3.18
382 383 7.759886 TCCGTATCTAGACAAATTCAAGACAAG 59.240 37.037 0.00 0.00 0.00 3.16
383 384 7.394872 CGTATCTAGACAAATTCAAGACAAGC 58.605 38.462 0.00 0.00 0.00 4.01
384 385 7.063426 CGTATCTAGACAAATTCAAGACAAGCA 59.937 37.037 0.00 0.00 0.00 3.91
385 386 7.750229 ATCTAGACAAATTCAAGACAAGCAA 57.250 32.000 0.00 0.00 0.00 3.91
386 387 7.750229 TCTAGACAAATTCAAGACAAGCAAT 57.250 32.000 0.00 0.00 0.00 3.56
387 388 8.169977 TCTAGACAAATTCAAGACAAGCAATT 57.830 30.769 0.00 0.00 0.00 2.32
388 389 8.292448 TCTAGACAAATTCAAGACAAGCAATTC 58.708 33.333 0.00 0.00 0.00 2.17
389 390 5.916883 AGACAAATTCAAGACAAGCAATTCG 59.083 36.000 0.00 0.00 0.00 3.34
390 391 4.984161 ACAAATTCAAGACAAGCAATTCGG 59.016 37.500 0.00 0.00 0.00 4.30
391 392 5.221224 ACAAATTCAAGACAAGCAATTCGGA 60.221 36.000 0.00 0.00 0.00 4.55
392 393 5.452078 AATTCAAGACAAGCAATTCGGAA 57.548 34.783 0.00 0.00 0.00 4.30
393 394 3.896648 TCAAGACAAGCAATTCGGAAC 57.103 42.857 0.00 0.00 0.00 3.62
409 410 3.840124 GGAACGGAGGGAATAGTTCAT 57.160 47.619 9.01 0.00 43.24 2.57
410 411 4.950205 GGAACGGAGGGAATAGTTCATA 57.050 45.455 9.01 0.00 43.24 2.15
411 412 5.485209 GGAACGGAGGGAATAGTTCATAT 57.515 43.478 9.01 0.00 43.24 1.78
412 413 5.866207 GGAACGGAGGGAATAGTTCATATT 58.134 41.667 9.01 0.00 43.24 1.28
413 414 5.701290 GGAACGGAGGGAATAGTTCATATTG 59.299 44.000 9.01 0.00 43.24 1.90
414 415 6.463897 GGAACGGAGGGAATAGTTCATATTGA 60.464 42.308 9.01 0.00 43.24 2.57
415 416 6.494666 ACGGAGGGAATAGTTCATATTGAA 57.505 37.500 0.00 0.00 34.10 2.69
416 417 6.895782 ACGGAGGGAATAGTTCATATTGAAA 58.104 36.000 0.00 0.00 38.22 2.69
417 418 7.518188 ACGGAGGGAATAGTTCATATTGAAAT 58.482 34.615 0.00 0.00 38.22 2.17
418 419 7.661847 ACGGAGGGAATAGTTCATATTGAAATC 59.338 37.037 0.00 0.00 38.22 2.17
419 420 7.880195 CGGAGGGAATAGTTCATATTGAAATCT 59.120 37.037 0.00 0.00 38.22 2.40
420 421 9.225436 GGAGGGAATAGTTCATATTGAAATCTC 57.775 37.037 0.00 0.00 38.22 2.75
438 439 9.436957 TGAAATCTCTAAAATGACTTGTACTCC 57.563 33.333 0.00 0.00 0.00 3.85
439 440 8.794335 AAATCTCTAAAATGACTTGTACTCCC 57.206 34.615 0.00 0.00 0.00 4.30
440 441 7.741554 ATCTCTAAAATGACTTGTACTCCCT 57.258 36.000 0.00 0.00 0.00 4.20
441 442 7.171630 TCTCTAAAATGACTTGTACTCCCTC 57.828 40.000 0.00 0.00 0.00 4.30
442 443 6.154706 TCTCTAAAATGACTTGTACTCCCTCC 59.845 42.308 0.00 0.00 0.00 4.30
443 444 3.611766 AAATGACTTGTACTCCCTCCG 57.388 47.619 0.00 0.00 0.00 4.63
444 445 2.233305 ATGACTTGTACTCCCTCCGT 57.767 50.000 0.00 0.00 0.00 4.69
445 446 2.005370 TGACTTGTACTCCCTCCGTT 57.995 50.000 0.00 0.00 0.00 4.44
446 447 1.891150 TGACTTGTACTCCCTCCGTTC 59.109 52.381 0.00 0.00 0.00 3.95
447 448 2.169330 GACTTGTACTCCCTCCGTTCT 58.831 52.381 0.00 0.00 0.00 3.01
448 449 3.245016 TGACTTGTACTCCCTCCGTTCTA 60.245 47.826 0.00 0.00 0.00 2.10
449 450 3.760684 GACTTGTACTCCCTCCGTTCTAA 59.239 47.826 0.00 0.00 0.00 2.10
450 451 4.154942 ACTTGTACTCCCTCCGTTCTAAA 58.845 43.478 0.00 0.00 0.00 1.85
451 452 4.776308 ACTTGTACTCCCTCCGTTCTAAAT 59.224 41.667 0.00 0.00 0.00 1.40
452 453 5.247792 ACTTGTACTCCCTCCGTTCTAAATT 59.752 40.000 0.00 0.00 0.00 1.82
453 454 6.438425 ACTTGTACTCCCTCCGTTCTAAATTA 59.562 38.462 0.00 0.00 0.00 1.40
454 455 6.212888 TGTACTCCCTCCGTTCTAAATTAC 57.787 41.667 0.00 0.00 0.00 1.89
455 456 5.954150 TGTACTCCCTCCGTTCTAAATTACT 59.046 40.000 0.00 0.00 0.00 2.24
456 457 5.595257 ACTCCCTCCGTTCTAAATTACTC 57.405 43.478 0.00 0.00 0.00 2.59
457 458 4.097589 ACTCCCTCCGTTCTAAATTACTCG 59.902 45.833 0.00 0.00 0.00 4.18
458 459 4.019174 TCCCTCCGTTCTAAATTACTCGT 58.981 43.478 0.00 0.00 0.00 4.18
459 460 4.096984 TCCCTCCGTTCTAAATTACTCGTC 59.903 45.833 0.00 0.00 0.00 4.20
460 461 4.033684 CCTCCGTTCTAAATTACTCGTCG 58.966 47.826 0.00 0.00 0.00 5.12
461 462 3.429085 TCCGTTCTAAATTACTCGTCGC 58.571 45.455 0.00 0.00 0.00 5.19
462 463 3.119884 TCCGTTCTAAATTACTCGTCGCA 60.120 43.478 0.00 0.00 0.00 5.10
463 464 3.239941 CCGTTCTAAATTACTCGTCGCAG 59.760 47.826 0.00 0.00 0.00 5.18
464 465 4.093514 CGTTCTAAATTACTCGTCGCAGA 58.906 43.478 0.00 0.00 0.00 4.26
465 466 4.556135 CGTTCTAAATTACTCGTCGCAGAA 59.444 41.667 0.00 0.00 39.69 3.02
466 467 5.060077 CGTTCTAAATTACTCGTCGCAGAAA 59.940 40.000 0.00 0.00 39.69 2.52
467 468 6.237490 CGTTCTAAATTACTCGTCGCAGAAAT 60.237 38.462 0.00 0.00 39.69 2.17
468 469 6.569228 TCTAAATTACTCGTCGCAGAAATG 57.431 37.500 0.00 0.00 39.69 2.32
469 470 4.600012 AAATTACTCGTCGCAGAAATGG 57.400 40.909 0.00 0.00 39.69 3.16
470 471 3.520290 ATTACTCGTCGCAGAAATGGA 57.480 42.857 0.00 0.00 39.69 3.41
471 472 3.520290 TTACTCGTCGCAGAAATGGAT 57.480 42.857 0.00 0.00 39.69 3.41
472 473 1.645034 ACTCGTCGCAGAAATGGATG 58.355 50.000 0.00 0.00 39.69 3.51
473 474 1.066858 ACTCGTCGCAGAAATGGATGT 60.067 47.619 0.00 0.00 39.69 3.06
474 475 2.165641 ACTCGTCGCAGAAATGGATGTA 59.834 45.455 0.00 0.00 39.69 2.29
475 476 3.181475 ACTCGTCGCAGAAATGGATGTAT 60.181 43.478 0.00 0.00 39.69 2.29
476 477 3.381045 TCGTCGCAGAAATGGATGTATC 58.619 45.455 0.00 0.00 39.69 2.24
477 478 3.068165 TCGTCGCAGAAATGGATGTATCT 59.932 43.478 0.00 0.00 39.69 1.98
478 479 4.277423 TCGTCGCAGAAATGGATGTATCTA 59.723 41.667 0.00 0.00 39.69 1.98
479 480 4.982295 CGTCGCAGAAATGGATGTATCTAA 59.018 41.667 0.00 0.00 39.69 2.10
480 481 5.462068 CGTCGCAGAAATGGATGTATCTAAA 59.538 40.000 0.00 0.00 39.69 1.85
481 482 6.019075 CGTCGCAGAAATGGATGTATCTAAAA 60.019 38.462 0.00 0.00 39.69 1.52
482 483 7.126398 GTCGCAGAAATGGATGTATCTAAAAC 58.874 38.462 0.00 0.00 39.69 2.43
483 484 7.011482 GTCGCAGAAATGGATGTATCTAAAACT 59.989 37.037 0.00 0.00 39.69 2.66
484 485 8.201464 TCGCAGAAATGGATGTATCTAAAACTA 58.799 33.333 0.00 0.00 0.00 2.24
485 486 8.826710 CGCAGAAATGGATGTATCTAAAACTAA 58.173 33.333 0.00 0.00 0.00 2.24
513 514 6.625362 ACATCTAGATACATTCATACCTGCG 58.375 40.000 4.54 0.00 0.00 5.18
514 515 6.434340 ACATCTAGATACATTCATACCTGCGA 59.566 38.462 4.54 0.00 0.00 5.10
515 516 6.255596 TCTAGATACATTCATACCTGCGAC 57.744 41.667 0.00 0.00 0.00 5.19
516 517 4.937201 AGATACATTCATACCTGCGACA 57.063 40.909 0.00 0.00 0.00 4.35
517 518 5.276461 AGATACATTCATACCTGCGACAA 57.724 39.130 0.00 0.00 0.00 3.18
518 519 5.292765 AGATACATTCATACCTGCGACAAG 58.707 41.667 0.00 0.00 0.00 3.16
519 520 3.334583 ACATTCATACCTGCGACAAGT 57.665 42.857 0.00 0.00 0.00 3.16
520 521 4.465632 ACATTCATACCTGCGACAAGTA 57.534 40.909 0.00 0.00 0.00 2.24
521 522 4.827692 ACATTCATACCTGCGACAAGTAA 58.172 39.130 0.00 0.00 0.00 2.24
522 523 4.630069 ACATTCATACCTGCGACAAGTAAC 59.370 41.667 0.00 0.00 0.00 2.50
523 524 4.530710 TTCATACCTGCGACAAGTAACT 57.469 40.909 0.00 0.00 0.00 2.24
524 525 4.106029 TCATACCTGCGACAAGTAACTC 57.894 45.455 0.00 0.00 0.00 3.01
525 526 2.624316 TACCTGCGACAAGTAACTCG 57.376 50.000 0.00 0.00 0.00 4.18
526 527 0.038526 ACCTGCGACAAGTAACTCGG 60.039 55.000 0.00 0.00 0.00 4.63
527 528 0.242825 CCTGCGACAAGTAACTCGGA 59.757 55.000 0.00 0.00 0.00 4.55
528 529 1.336517 CCTGCGACAAGTAACTCGGAA 60.337 52.381 0.00 0.00 29.29 4.30
529 530 1.719780 CTGCGACAAGTAACTCGGAAC 59.280 52.381 0.00 0.00 29.29 3.62
549 550 5.742926 GGAACGGAGAGACTATTTAGAAACG 59.257 44.000 0.00 0.00 0.00 3.60
550 551 5.246145 ACGGAGAGACTATTTAGAAACGG 57.754 43.478 0.00 0.00 0.00 4.44
551 552 4.946157 ACGGAGAGACTATTTAGAAACGGA 59.054 41.667 0.00 0.00 0.00 4.69
552 553 5.066246 ACGGAGAGACTATTTAGAAACGGAG 59.934 44.000 0.00 0.00 0.00 4.63
553 554 5.505985 CGGAGAGACTATTTAGAAACGGAGG 60.506 48.000 0.00 0.00 0.00 4.30
554 555 5.221283 GGAGAGACTATTTAGAAACGGAGGG 60.221 48.000 0.00 0.00 0.00 4.30
555 556 5.516984 AGAGACTATTTAGAAACGGAGGGA 58.483 41.667 0.00 0.00 0.00 4.20
556 557 5.595133 AGAGACTATTTAGAAACGGAGGGAG 59.405 44.000 0.00 0.00 0.00 4.30
557 558 5.270794 AGACTATTTAGAAACGGAGGGAGT 58.729 41.667 0.00 0.00 0.00 3.85
558 559 6.430007 AGACTATTTAGAAACGGAGGGAGTA 58.570 40.000 0.00 0.00 0.00 2.59
559 560 6.546772 AGACTATTTAGAAACGGAGGGAGTAG 59.453 42.308 0.00 0.00 0.00 2.57
560 561 3.881937 TTTAGAAACGGAGGGAGTAGC 57.118 47.619 0.00 0.00 0.00 3.58
561 562 2.519771 TAGAAACGGAGGGAGTAGCA 57.480 50.000 0.00 0.00 0.00 3.49
562 563 1.640917 AGAAACGGAGGGAGTAGCAA 58.359 50.000 0.00 0.00 0.00 3.91
563 564 1.975680 AGAAACGGAGGGAGTAGCAAA 59.024 47.619 0.00 0.00 0.00 3.68
609 610 7.715265 ATTAGTAAGCTGTATGTGCATACAC 57.285 36.000 17.95 14.85 46.11 2.90
698 774 3.828451 AGCCATGGATGCCAATTATGTAC 59.172 43.478 18.40 0.00 36.95 2.90
699 775 3.828451 GCCATGGATGCCAATTATGTACT 59.172 43.478 18.40 0.00 36.95 2.73
704 784 4.574421 TGGATGCCAATTATGTACTCGTTG 59.426 41.667 0.00 0.00 0.00 4.10
795 875 2.171448 AGCTCATCACCCACCTTATCAC 59.829 50.000 0.00 0.00 0.00 3.06
816 897 3.033764 CAACCACCACGTCGTCCG 61.034 66.667 0.00 0.00 44.03 4.79
844 926 2.625790 CCTGCGCTATATATCCCTCTCC 59.374 54.545 9.73 0.00 0.00 3.71
874 956 2.776913 CGCCTCCTCTCCTCCGTTC 61.777 68.421 0.00 0.00 0.00 3.95
886 968 1.351350 CCTCCGTTCCCTTTTCTTCCT 59.649 52.381 0.00 0.00 0.00 3.36
897 979 2.507110 TTTCTTCCTCAGCTCCGGCG 62.507 60.000 0.00 0.00 44.37 6.46
898 980 4.521062 CTTCCTCAGCTCCGGCGG 62.521 72.222 22.51 22.51 44.37 6.13
915 997 3.611792 GCAGCGAGCGTAAGAGCG 61.612 66.667 0.00 0.00 43.00 5.03
919 1012 4.831307 CGAGCGTAAGAGCGGCGT 62.831 66.667 9.37 0.00 43.00 5.68
989 1082 6.823497 TGCTGTAGTTTAGTTTACAGAGGTT 58.177 36.000 14.02 0.00 46.10 3.50
992 1085 7.656542 GCTGTAGTTTAGTTTACAGAGGTTTCT 59.343 37.037 14.02 0.00 46.10 2.52
1006 1099 2.712944 TTTCTGCCGGCCATGCATG 61.713 57.895 26.77 20.19 38.22 4.06
1807 1903 2.367202 ATCTTCCGCCCCATCGTGT 61.367 57.895 0.00 0.00 0.00 4.49
1945 2042 5.691754 CACAATTCGTTCGATCCATCATAGA 59.308 40.000 0.00 0.00 0.00 1.98
1960 2057 4.963318 TCATAGACATTGTCCATCCTCC 57.037 45.455 13.14 0.00 32.18 4.30
1963 2060 2.122768 AGACATTGTCCATCCTCCTCC 58.877 52.381 13.14 0.00 32.18 4.30
1965 2062 2.507471 GACATTGTCCATCCTCCTCCTT 59.493 50.000 5.44 0.00 0.00 3.36
1968 2065 4.349342 ACATTGTCCATCCTCCTCCTTATC 59.651 45.833 0.00 0.00 0.00 1.75
1969 2066 3.706389 TGTCCATCCTCCTCCTTATCA 57.294 47.619 0.00 0.00 0.00 2.15
1970 2067 4.219392 TGTCCATCCTCCTCCTTATCAT 57.781 45.455 0.00 0.00 0.00 2.45
1971 2068 4.163427 TGTCCATCCTCCTCCTTATCATC 58.837 47.826 0.00 0.00 0.00 2.92
1973 2070 4.782156 GTCCATCCTCCTCCTTATCATCAT 59.218 45.833 0.00 0.00 0.00 2.45
2001 2098 6.877236 ACAAAAATGTGAAACCAAGATGAGT 58.123 32.000 0.00 0.00 34.36 3.41
2041 2141 9.678941 AATTTTCTCCGATTTTGTAACTCTTTC 57.321 29.630 0.00 0.00 0.00 2.62
2044 2144 7.421530 TCTCCGATTTTGTAACTCTTTCTTG 57.578 36.000 0.00 0.00 0.00 3.02
2045 2145 6.990349 TCTCCGATTTTGTAACTCTTTCTTGT 59.010 34.615 0.00 0.00 0.00 3.16
2047 2147 7.636326 TCCGATTTTGTAACTCTTTCTTGTTC 58.364 34.615 0.00 0.00 0.00 3.18
2048 2148 6.856426 CCGATTTTGTAACTCTTTCTTGTTCC 59.144 38.462 0.00 0.00 0.00 3.62
2049 2149 6.573725 CGATTTTGTAACTCTTTCTTGTTCCG 59.426 38.462 0.00 0.00 0.00 4.30
2050 2150 5.744666 TTTGTAACTCTTTCTTGTTCCGG 57.255 39.130 0.00 0.00 0.00 5.14
2118 2223 5.712152 AGTGGTTCACTTCAATTCATTCC 57.288 39.130 0.00 0.00 42.59 3.01
2134 2239 4.834534 TCATTCCCCTGAAATTTGCATTG 58.165 39.130 0.00 0.00 33.32 2.82
2135 2240 2.766345 TCCCCTGAAATTTGCATTGC 57.234 45.000 0.46 0.46 0.00 3.56
2146 2252 1.612676 TTGCATTGCTCAGCTCAAGT 58.387 45.000 10.49 0.00 0.00 3.16
2150 2256 2.667724 GCATTGCTCAGCTCAAGTTCAC 60.668 50.000 0.00 0.00 0.00 3.18
2176 2286 5.627499 GTGAGCTCACAATTTTGGATGTA 57.373 39.130 36.23 0.00 45.75 2.29
2218 2337 9.239551 AGTATGTGTGACACTGTAATTAGTAGA 57.760 33.333 17.47 0.00 35.11 2.59
2285 2404 1.079438 GGTGAGAGGGAGAGTGGGT 59.921 63.158 0.00 0.00 0.00 4.51
2349 2468 2.796557 TCAGACTGACCGATCAAGAGT 58.203 47.619 0.00 0.00 33.30 3.24
2438 2557 3.036091 CTCATGGCCCCAGATGAATTTT 58.964 45.455 0.00 0.00 0.00 1.82
2444 2564 4.650588 TGGCCCCAGATGAATTTTGATTAG 59.349 41.667 0.00 0.00 0.00 1.73
2448 2568 6.352137 GCCCCAGATGAATTTTGATTAGGTTT 60.352 38.462 0.00 0.00 0.00 3.27
2511 2631 4.833478 ATCCTATGTCTATGTGATGCCC 57.167 45.455 0.00 0.00 0.00 5.36
2523 2643 1.134551 GTGATGCCCTCTCACCTCTTC 60.135 57.143 0.00 0.00 37.61 2.87
2526 2646 0.616111 TGCCCTCTCACCTCTTCCTC 60.616 60.000 0.00 0.00 0.00 3.71
2537 2657 1.557371 CCTCTTCCTCCCCTTGACTTC 59.443 57.143 0.00 0.00 0.00 3.01
2557 2761 9.609346 TGACTTCTAAAAGCAAAAGTAGTAGTT 57.391 29.630 0.00 0.00 35.81 2.24
2590 2801 6.853872 TGTTTAATTTGTGCGAATGTGAGTAC 59.146 34.615 0.00 0.00 0.00 2.73
2596 2807 3.064207 GTGCGAATGTGAGTACTTTGGA 58.936 45.455 0.00 0.00 0.00 3.53
2597 2808 3.064207 TGCGAATGTGAGTACTTTGGAC 58.936 45.455 0.00 0.00 0.00 4.02
2604 2816 6.959639 ATGTGAGTACTTTGGACATGTTTT 57.040 33.333 0.00 0.00 0.00 2.43
2605 2817 6.130298 TGTGAGTACTTTGGACATGTTTTG 57.870 37.500 0.00 0.00 0.00 2.44
2641 2853 2.177950 CAGCATGTGGACCAGCTTC 58.822 57.895 4.02 0.00 34.61 3.86
2754 2990 3.763897 GGTGCCTAACTGATGGTCAAATT 59.236 43.478 0.00 0.00 0.00 1.82
2800 3036 3.334583 TTCATGAGAAAGGGAACGGAG 57.665 47.619 0.00 0.00 0.00 4.63
2802 3038 2.497675 TCATGAGAAAGGGAACGGAGAG 59.502 50.000 0.00 0.00 0.00 3.20
2807 3050 0.977395 AAAGGGAACGGAGAGGTGAG 59.023 55.000 0.00 0.00 0.00 3.51
2823 3066 7.391833 GGAGAGGTGAGAATGTTCAATTTACTT 59.608 37.037 0.00 0.00 0.00 2.24
2824 3067 8.103948 AGAGGTGAGAATGTTCAATTTACTTG 57.896 34.615 0.00 0.00 36.09 3.16
2840 3083 6.539649 TTTACTTGAACATGAGAGTTTCGG 57.460 37.500 0.00 0.00 0.00 4.30
2843 3089 1.974957 TGAACATGAGAGTTTCGGGGA 59.025 47.619 0.00 0.00 0.00 4.81
2862 3108 6.320164 TCGGGGAGAAAACAAACAATATATGG 59.680 38.462 0.00 0.00 0.00 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.469892 CAGCTGGTTTGGGGGTTTCT 60.470 55.000 5.57 0.00 0.00 2.52
1 2 2.049435 CAGCTGGTTTGGGGGTTTC 58.951 57.895 5.57 0.00 0.00 2.78
2 3 2.140138 GCAGCTGGTTTGGGGGTTT 61.140 57.895 17.12 0.00 0.00 3.27
3 4 2.524148 GCAGCTGGTTTGGGGGTT 60.524 61.111 17.12 0.00 0.00 4.11
4 5 3.164610 ATGCAGCTGGTTTGGGGGT 62.165 57.895 17.12 0.00 0.00 4.95
5 6 2.284112 ATGCAGCTGGTTTGGGGG 60.284 61.111 17.12 0.00 0.00 5.40
6 7 2.652095 CCATGCAGCTGGTTTGGGG 61.652 63.158 17.12 0.00 0.00 4.96
7 8 0.974010 ATCCATGCAGCTGGTTTGGG 60.974 55.000 17.12 0.00 37.57 4.12
8 9 0.458669 GATCCATGCAGCTGGTTTGG 59.541 55.000 17.12 7.77 37.57 3.28
9 10 0.099968 CGATCCATGCAGCTGGTTTG 59.900 55.000 17.12 0.00 37.57 2.93
10 11 1.033746 CCGATCCATGCAGCTGGTTT 61.034 55.000 17.12 0.00 37.57 3.27
11 12 1.452651 CCGATCCATGCAGCTGGTT 60.453 57.895 17.12 0.00 37.57 3.67
12 13 2.191375 CCGATCCATGCAGCTGGT 59.809 61.111 17.12 0.00 37.57 4.00
13 14 2.184830 CACCGATCCATGCAGCTGG 61.185 63.158 17.12 0.00 37.66 4.85
14 15 2.831366 GCACCGATCCATGCAGCTG 61.831 63.158 10.11 10.11 41.65 4.24
15 16 2.515523 GCACCGATCCATGCAGCT 60.516 61.111 10.27 0.00 41.65 4.24
16 17 3.589881 GGCACCGATCCATGCAGC 61.590 66.667 15.63 0.00 43.93 5.25
17 18 2.124612 TGGCACCGATCCATGCAG 60.125 61.111 15.63 0.00 43.93 4.41
18 19 2.124612 CTGGCACCGATCCATGCA 60.125 61.111 15.63 0.00 43.93 3.96
19 20 3.589881 GCTGGCACCGATCCATGC 61.590 66.667 7.21 7.21 41.29 4.06
20 21 2.903855 GGCTGGCACCGATCCATG 60.904 66.667 0.00 0.00 32.37 3.66
21 22 3.410628 TGGCTGGCACCGATCCAT 61.411 61.111 0.00 0.00 32.37 3.41
22 23 4.100084 CTGGCTGGCACCGATCCA 62.100 66.667 0.00 0.00 0.00 3.41
23 24 3.329542 TTCTGGCTGGCACCGATCC 62.330 63.158 0.00 0.00 0.00 3.36
24 25 1.817099 CTTCTGGCTGGCACCGATC 60.817 63.158 0.00 0.00 0.00 3.69
25 26 1.630126 ATCTTCTGGCTGGCACCGAT 61.630 55.000 0.00 0.00 0.00 4.18
26 27 0.975556 TATCTTCTGGCTGGCACCGA 60.976 55.000 0.00 0.00 0.00 4.69
27 28 0.811616 GTATCTTCTGGCTGGCACCG 60.812 60.000 0.00 0.00 0.00 4.94
28 29 0.253044 TGTATCTTCTGGCTGGCACC 59.747 55.000 0.00 0.00 0.00 5.01
29 30 2.113860 TTGTATCTTCTGGCTGGCAC 57.886 50.000 0.00 0.00 0.00 5.01
30 31 2.224744 TGTTTGTATCTTCTGGCTGGCA 60.225 45.455 3.18 3.18 0.00 4.92
31 32 2.436417 TGTTTGTATCTTCTGGCTGGC 58.564 47.619 0.00 0.00 0.00 4.85
32 33 3.820467 TGTTGTTTGTATCTTCTGGCTGG 59.180 43.478 0.00 0.00 0.00 4.85
33 34 4.275689 TGTGTTGTTTGTATCTTCTGGCTG 59.724 41.667 0.00 0.00 0.00 4.85
34 35 4.460263 TGTGTTGTTTGTATCTTCTGGCT 58.540 39.130 0.00 0.00 0.00 4.75
53 54 5.428496 ACAAATCTGATGTGTTGTCTGTG 57.572 39.130 7.66 0.00 28.08 3.66
55 56 4.083110 GGGACAAATCTGATGTGTTGTCTG 60.083 45.833 22.90 0.00 45.85 3.51
92 93 8.470002 GCAGTATCTTCCAAAGTTCCAATTAAT 58.530 33.333 0.00 0.00 0.00 1.40
93 94 7.450014 TGCAGTATCTTCCAAAGTTCCAATTAA 59.550 33.333 0.00 0.00 0.00 1.40
94 95 6.945435 TGCAGTATCTTCCAAAGTTCCAATTA 59.055 34.615 0.00 0.00 0.00 1.40
95 96 5.774690 TGCAGTATCTTCCAAAGTTCCAATT 59.225 36.000 0.00 0.00 0.00 2.32
96 97 5.183904 GTGCAGTATCTTCCAAAGTTCCAAT 59.816 40.000 0.00 0.00 0.00 3.16
97 98 4.518970 GTGCAGTATCTTCCAAAGTTCCAA 59.481 41.667 0.00 0.00 0.00 3.53
98 99 4.072131 GTGCAGTATCTTCCAAAGTTCCA 58.928 43.478 0.00 0.00 0.00 3.53
99 100 4.327680 AGTGCAGTATCTTCCAAAGTTCC 58.672 43.478 0.00 0.00 0.00 3.62
100 101 6.166982 ACTAGTGCAGTATCTTCCAAAGTTC 58.833 40.000 0.71 0.00 34.98 3.01
101 102 6.115448 ACTAGTGCAGTATCTTCCAAAGTT 57.885 37.500 0.71 0.00 34.98 2.66
102 103 5.746990 ACTAGTGCAGTATCTTCCAAAGT 57.253 39.130 0.71 0.00 34.98 2.66
103 104 6.631016 TGTACTAGTGCAGTATCTTCCAAAG 58.369 40.000 9.84 0.00 41.77 2.77
104 105 6.599356 TGTACTAGTGCAGTATCTTCCAAA 57.401 37.500 9.84 0.00 41.77 3.28
105 106 6.791867 ATGTACTAGTGCAGTATCTTCCAA 57.208 37.500 18.73 0.00 41.77 3.53
106 107 7.891498 TTATGTACTAGTGCAGTATCTTCCA 57.109 36.000 18.73 0.00 41.77 3.53
107 108 7.815068 CCATTATGTACTAGTGCAGTATCTTCC 59.185 40.741 18.73 0.00 41.77 3.46
108 109 8.361139 ACCATTATGTACTAGTGCAGTATCTTC 58.639 37.037 18.73 0.00 41.77 2.87
109 110 8.251383 ACCATTATGTACTAGTGCAGTATCTT 57.749 34.615 18.73 3.97 41.77 2.40
110 111 7.039644 GGACCATTATGTACTAGTGCAGTATCT 60.040 40.741 18.73 4.67 41.77 1.98
111 112 7.091443 GGACCATTATGTACTAGTGCAGTATC 58.909 42.308 18.73 9.88 41.77 2.24
112 113 6.553476 TGGACCATTATGTACTAGTGCAGTAT 59.447 38.462 18.73 11.32 41.77 2.12
113 114 5.894964 TGGACCATTATGTACTAGTGCAGTA 59.105 40.000 18.73 9.59 38.80 2.74
114 115 4.714802 TGGACCATTATGTACTAGTGCAGT 59.285 41.667 18.73 10.65 41.62 4.40
115 116 5.276461 TGGACCATTATGTACTAGTGCAG 57.724 43.478 18.73 7.59 0.00 4.41
116 117 5.887214 ATGGACCATTATGTACTAGTGCA 57.113 39.130 16.34 16.34 0.00 4.57
117 118 7.228314 TCTATGGACCATTATGTACTAGTGC 57.772 40.000 13.40 4.49 0.00 4.40
118 119 7.761704 GCATCTATGGACCATTATGTACTAGTG 59.238 40.741 13.40 4.12 0.00 2.74
119 120 7.454694 TGCATCTATGGACCATTATGTACTAGT 59.545 37.037 13.40 0.00 0.00 2.57
120 121 7.840931 TGCATCTATGGACCATTATGTACTAG 58.159 38.462 13.40 1.07 0.00 2.57
121 122 7.579531 GCTGCATCTATGGACCATTATGTACTA 60.580 40.741 13.40 5.41 0.00 1.82
122 123 6.686484 TGCATCTATGGACCATTATGTACT 57.314 37.500 13.40 0.00 0.00 2.73
123 124 5.352569 GCTGCATCTATGGACCATTATGTAC 59.647 44.000 13.40 6.30 0.00 2.90
124 125 5.012975 TGCTGCATCTATGGACCATTATGTA 59.987 40.000 13.40 14.49 0.00 2.29
125 126 4.202493 TGCTGCATCTATGGACCATTATGT 60.202 41.667 13.40 0.00 0.00 2.29
126 127 4.329392 TGCTGCATCTATGGACCATTATG 58.671 43.478 13.40 16.80 0.00 1.90
127 128 4.645863 TGCTGCATCTATGGACCATTAT 57.354 40.909 13.40 4.24 0.00 1.28
128 129 4.329392 CATGCTGCATCTATGGACCATTA 58.671 43.478 13.40 1.70 0.00 1.90
157 158 1.546476 GGAGGGAGTAGGATACATGCG 59.454 57.143 0.00 0.00 46.26 4.73
159 160 4.223923 GGAATGGAGGGAGTAGGATACATG 59.776 50.000 0.00 0.00 46.26 3.21
170 171 9.868160 AAAACTTATATTTAGGAATGGAGGGAG 57.132 33.333 0.00 0.00 0.00 4.30
214 215 7.486647 TCATTTTACTTCGTATGGAGTAGTCC 58.513 38.462 9.91 9.91 44.24 3.85
215 216 8.189460 ACTCATTTTACTTCGTATGGAGTAGTC 58.811 37.037 3.30 0.00 0.00 2.59
216 217 7.974501 CACTCATTTTACTTCGTATGGAGTAGT 59.025 37.037 3.30 0.00 0.00 2.73
217 218 8.188799 TCACTCATTTTACTTCGTATGGAGTAG 58.811 37.037 3.30 0.00 0.00 2.57
218 219 8.058667 TCACTCATTTTACTTCGTATGGAGTA 57.941 34.615 0.00 0.00 0.00 2.59
219 220 6.931838 TCACTCATTTTACTTCGTATGGAGT 58.068 36.000 0.50 0.50 0.00 3.85
220 221 7.827819 TTCACTCATTTTACTTCGTATGGAG 57.172 36.000 0.00 0.00 0.00 3.86
221 222 8.258007 AGATTCACTCATTTTACTTCGTATGGA 58.742 33.333 0.00 0.00 0.00 3.41
222 223 8.425577 AGATTCACTCATTTTACTTCGTATGG 57.574 34.615 0.00 0.00 0.00 2.74
225 226 9.569167 CTGTAGATTCACTCATTTTACTTCGTA 57.431 33.333 0.00 0.00 0.00 3.43
226 227 8.088981 ACTGTAGATTCACTCATTTTACTTCGT 58.911 33.333 0.00 0.00 0.00 3.85
227 228 8.467402 ACTGTAGATTCACTCATTTTACTTCG 57.533 34.615 0.00 0.00 0.00 3.79
269 270 4.202641 ACGGAGGGAGTACATATGGATGTA 60.203 45.833 7.80 0.00 44.77 2.29
271 272 3.165875 ACGGAGGGAGTACATATGGATG 58.834 50.000 7.80 0.00 39.16 3.51
272 273 3.544698 ACGGAGGGAGTACATATGGAT 57.455 47.619 7.80 0.00 0.00 3.41
273 274 3.228453 GAACGGAGGGAGTACATATGGA 58.772 50.000 7.80 0.00 0.00 3.41
274 275 2.299297 GGAACGGAGGGAGTACATATGG 59.701 54.545 7.80 0.00 0.00 2.74
275 276 3.662247 GGAACGGAGGGAGTACATATG 57.338 52.381 0.00 0.00 0.00 1.78
291 292 8.718734 ACAAATCTAAGACAAGTAATTCGGAAC 58.281 33.333 0.00 0.00 0.00 3.62
292 293 8.842358 ACAAATCTAAGACAAGTAATTCGGAA 57.158 30.769 0.00 0.00 0.00 4.30
293 294 8.311836 AGACAAATCTAAGACAAGTAATTCGGA 58.688 33.333 0.00 0.00 31.46 4.55
294 295 8.480643 AGACAAATCTAAGACAAGTAATTCGG 57.519 34.615 0.00 0.00 31.46 4.30
301 302 8.407064 CCGTATCTAGACAAATCTAAGACAAGT 58.593 37.037 0.00 0.00 36.98 3.16
302 303 8.622157 TCCGTATCTAGACAAATCTAAGACAAG 58.378 37.037 0.00 0.00 36.98 3.16
303 304 8.515695 TCCGTATCTAGACAAATCTAAGACAA 57.484 34.615 0.00 0.00 36.98 3.18
304 305 7.991460 TCTCCGTATCTAGACAAATCTAAGACA 59.009 37.037 0.00 0.00 36.98 3.41
305 306 8.380743 TCTCCGTATCTAGACAAATCTAAGAC 57.619 38.462 0.00 0.00 36.98 3.01
319 320 9.955102 TTTTAGTGCTAGATATCTCCGTATCTA 57.045 33.333 8.95 3.82 40.79 1.98
320 321 8.865420 TTTTAGTGCTAGATATCTCCGTATCT 57.135 34.615 8.95 4.71 42.50 1.98
321 322 9.509855 CATTTTAGTGCTAGATATCTCCGTATC 57.490 37.037 8.95 0.00 0.00 2.24
322 323 9.244292 TCATTTTAGTGCTAGATATCTCCGTAT 57.756 33.333 8.95 0.00 0.00 3.06
323 324 8.631480 TCATTTTAGTGCTAGATATCTCCGTA 57.369 34.615 8.95 0.00 0.00 4.02
324 325 7.231722 ACTCATTTTAGTGCTAGATATCTCCGT 59.768 37.037 8.95 0.00 0.00 4.69
325 326 7.598278 ACTCATTTTAGTGCTAGATATCTCCG 58.402 38.462 8.95 3.05 0.00 4.63
326 327 8.802267 AGACTCATTTTAGTGCTAGATATCTCC 58.198 37.037 8.95 2.43 0.00 3.71
332 333 8.802267 GGATCTAGACTCATTTTAGTGCTAGAT 58.198 37.037 16.83 16.83 42.21 1.98
333 334 7.041030 CGGATCTAGACTCATTTTAGTGCTAGA 60.041 40.741 0.00 0.00 38.76 2.43
334 335 7.081349 CGGATCTAGACTCATTTTAGTGCTAG 58.919 42.308 0.00 0.00 33.34 3.42
335 336 6.546403 ACGGATCTAGACTCATTTTAGTGCTA 59.454 38.462 0.00 0.00 0.00 3.49
336 337 5.361285 ACGGATCTAGACTCATTTTAGTGCT 59.639 40.000 0.00 0.00 0.00 4.40
337 338 5.593010 ACGGATCTAGACTCATTTTAGTGC 58.407 41.667 0.00 0.00 0.00 4.40
338 339 8.788806 AGATACGGATCTAGACTCATTTTAGTG 58.211 37.037 8.88 0.00 40.85 2.74
339 340 8.927675 AGATACGGATCTAGACTCATTTTAGT 57.072 34.615 8.88 0.00 40.85 2.24
352 353 9.350951 TCTTGAATTTGTCTAGATACGGATCTA 57.649 33.333 16.57 16.57 42.66 1.98
353 354 8.138712 GTCTTGAATTTGTCTAGATACGGATCT 58.861 37.037 15.99 15.99 44.90 2.75
354 355 7.921214 TGTCTTGAATTTGTCTAGATACGGATC 59.079 37.037 0.00 0.00 39.77 3.36
355 356 7.782049 TGTCTTGAATTTGTCTAGATACGGAT 58.218 34.615 0.00 0.00 39.77 4.18
356 357 7.165460 TGTCTTGAATTTGTCTAGATACGGA 57.835 36.000 0.00 0.00 39.77 4.69
357 358 7.464710 GCTTGTCTTGAATTTGTCTAGATACGG 60.465 40.741 0.00 0.00 39.77 4.02
358 359 7.063426 TGCTTGTCTTGAATTTGTCTAGATACG 59.937 37.037 0.00 0.00 39.77 3.06
359 360 8.256611 TGCTTGTCTTGAATTTGTCTAGATAC 57.743 34.615 0.00 0.00 39.77 2.24
360 361 8.846943 TTGCTTGTCTTGAATTTGTCTAGATA 57.153 30.769 0.00 0.00 39.77 1.98
361 362 7.750229 TTGCTTGTCTTGAATTTGTCTAGAT 57.250 32.000 0.00 0.00 39.77 1.98
362 363 7.750229 ATTGCTTGTCTTGAATTTGTCTAGA 57.250 32.000 0.00 0.00 35.99 2.43
363 364 7.269937 CGAATTGCTTGTCTTGAATTTGTCTAG 59.730 37.037 0.00 0.00 0.00 2.43
364 365 7.077605 CGAATTGCTTGTCTTGAATTTGTCTA 58.922 34.615 0.00 0.00 0.00 2.59
365 366 5.916883 CGAATTGCTTGTCTTGAATTTGTCT 59.083 36.000 0.00 0.00 0.00 3.41
366 367 5.117592 CCGAATTGCTTGTCTTGAATTTGTC 59.882 40.000 0.00 0.00 0.00 3.18
367 368 4.984161 CCGAATTGCTTGTCTTGAATTTGT 59.016 37.500 0.00 0.00 0.00 2.83
368 369 5.221880 TCCGAATTGCTTGTCTTGAATTTG 58.778 37.500 0.00 0.00 0.00 2.32
369 370 5.452078 TCCGAATTGCTTGTCTTGAATTT 57.548 34.783 0.00 0.00 0.00 1.82
370 371 5.222631 GTTCCGAATTGCTTGTCTTGAATT 58.777 37.500 0.00 0.00 0.00 2.17
371 372 4.613622 CGTTCCGAATTGCTTGTCTTGAAT 60.614 41.667 0.00 0.00 0.00 2.57
372 373 3.303725 CGTTCCGAATTGCTTGTCTTGAA 60.304 43.478 0.00 0.00 0.00 2.69
373 374 2.223144 CGTTCCGAATTGCTTGTCTTGA 59.777 45.455 0.00 0.00 0.00 3.02
374 375 2.574322 CGTTCCGAATTGCTTGTCTTG 58.426 47.619 0.00 0.00 0.00 3.02
375 376 1.535462 CCGTTCCGAATTGCTTGTCTT 59.465 47.619 0.00 0.00 0.00 3.01
376 377 1.156736 CCGTTCCGAATTGCTTGTCT 58.843 50.000 0.00 0.00 0.00 3.41
377 378 1.128692 CTCCGTTCCGAATTGCTTGTC 59.871 52.381 0.00 0.00 0.00 3.18
378 379 1.156736 CTCCGTTCCGAATTGCTTGT 58.843 50.000 0.00 0.00 0.00 3.16
379 380 0.447801 CCTCCGTTCCGAATTGCTTG 59.552 55.000 0.00 0.00 0.00 4.01
380 381 0.676782 CCCTCCGTTCCGAATTGCTT 60.677 55.000 0.00 0.00 0.00 3.91
381 382 1.078426 CCCTCCGTTCCGAATTGCT 60.078 57.895 0.00 0.00 0.00 3.91
382 383 0.675522 TTCCCTCCGTTCCGAATTGC 60.676 55.000 0.00 0.00 0.00 3.56
383 384 2.038387 ATTCCCTCCGTTCCGAATTG 57.962 50.000 0.00 0.00 0.00 2.32
384 385 2.770232 ACTATTCCCTCCGTTCCGAATT 59.230 45.455 0.00 0.00 0.00 2.17
385 386 2.395619 ACTATTCCCTCCGTTCCGAAT 58.604 47.619 0.00 0.00 0.00 3.34
386 387 1.856629 ACTATTCCCTCCGTTCCGAA 58.143 50.000 0.00 0.00 0.00 4.30
387 388 1.753073 GAACTATTCCCTCCGTTCCGA 59.247 52.381 0.00 0.00 31.89 4.55
388 389 1.479323 TGAACTATTCCCTCCGTTCCG 59.521 52.381 0.00 0.00 35.97 4.30
389 390 3.840124 ATGAACTATTCCCTCCGTTCC 57.160 47.619 0.00 0.00 35.97 3.62
390 391 6.522054 TCAATATGAACTATTCCCTCCGTTC 58.478 40.000 0.00 0.00 37.02 3.95
391 392 6.494666 TCAATATGAACTATTCCCTCCGTT 57.505 37.500 0.00 0.00 0.00 4.44
392 393 6.494666 TTCAATATGAACTATTCCCTCCGT 57.505 37.500 0.00 0.00 30.26 4.69
393 394 7.880195 AGATTTCAATATGAACTATTCCCTCCG 59.120 37.037 0.00 0.00 35.89 4.63
394 395 9.225436 GAGATTTCAATATGAACTATTCCCTCC 57.775 37.037 0.00 0.00 35.89 4.30
412 413 9.436957 GGAGTACAAGTCATTTTAGAGATTTCA 57.563 33.333 0.00 0.00 0.00 2.69
413 414 8.884726 GGGAGTACAAGTCATTTTAGAGATTTC 58.115 37.037 0.00 0.00 0.00 2.17
414 415 8.606830 AGGGAGTACAAGTCATTTTAGAGATTT 58.393 33.333 0.00 0.00 0.00 2.17
415 416 8.152023 AGGGAGTACAAGTCATTTTAGAGATT 57.848 34.615 0.00 0.00 0.00 2.40
416 417 7.147637 GGAGGGAGTACAAGTCATTTTAGAGAT 60.148 40.741 0.00 0.00 0.00 2.75
417 418 6.154706 GGAGGGAGTACAAGTCATTTTAGAGA 59.845 42.308 0.00 0.00 0.00 3.10
418 419 6.342111 GGAGGGAGTACAAGTCATTTTAGAG 58.658 44.000 0.00 0.00 0.00 2.43
419 420 5.105473 CGGAGGGAGTACAAGTCATTTTAGA 60.105 44.000 0.00 0.00 0.00 2.10
420 421 5.109903 CGGAGGGAGTACAAGTCATTTTAG 58.890 45.833 0.00 0.00 0.00 1.85
421 422 4.529377 ACGGAGGGAGTACAAGTCATTTTA 59.471 41.667 0.00 0.00 0.00 1.52
422 423 3.326880 ACGGAGGGAGTACAAGTCATTTT 59.673 43.478 0.00 0.00 0.00 1.82
423 424 2.904434 ACGGAGGGAGTACAAGTCATTT 59.096 45.455 0.00 0.00 0.00 2.32
424 425 2.537143 ACGGAGGGAGTACAAGTCATT 58.463 47.619 0.00 0.00 0.00 2.57
425 426 2.233305 ACGGAGGGAGTACAAGTCAT 57.767 50.000 0.00 0.00 0.00 3.06
426 427 1.891150 GAACGGAGGGAGTACAAGTCA 59.109 52.381 0.00 0.00 0.00 3.41
427 428 2.169330 AGAACGGAGGGAGTACAAGTC 58.831 52.381 0.00 0.00 0.00 3.01
428 429 2.305858 AGAACGGAGGGAGTACAAGT 57.694 50.000 0.00 0.00 0.00 3.16
429 430 4.796038 TTTAGAACGGAGGGAGTACAAG 57.204 45.455 0.00 0.00 0.00 3.16
430 431 5.750352 AATTTAGAACGGAGGGAGTACAA 57.250 39.130 0.00 0.00 0.00 2.41
431 432 5.954150 AGTAATTTAGAACGGAGGGAGTACA 59.046 40.000 0.00 0.00 0.00 2.90
432 433 6.462552 AGTAATTTAGAACGGAGGGAGTAC 57.537 41.667 0.00 0.00 0.00 2.73
433 434 5.297776 CGAGTAATTTAGAACGGAGGGAGTA 59.702 44.000 0.00 0.00 0.00 2.59
434 435 4.097589 CGAGTAATTTAGAACGGAGGGAGT 59.902 45.833 0.00 0.00 0.00 3.85
435 436 4.097589 ACGAGTAATTTAGAACGGAGGGAG 59.902 45.833 0.00 0.00 0.00 4.30
436 437 4.019174 ACGAGTAATTTAGAACGGAGGGA 58.981 43.478 0.00 0.00 0.00 4.20
437 438 4.357996 GACGAGTAATTTAGAACGGAGGG 58.642 47.826 0.00 0.00 0.00 4.30
438 439 4.033684 CGACGAGTAATTTAGAACGGAGG 58.966 47.826 0.00 0.00 0.00 4.30
439 440 3.481388 GCGACGAGTAATTTAGAACGGAG 59.519 47.826 0.00 0.00 0.00 4.63
440 441 3.119884 TGCGACGAGTAATTTAGAACGGA 60.120 43.478 0.00 0.00 0.00 4.69
441 442 3.173599 TGCGACGAGTAATTTAGAACGG 58.826 45.455 0.00 0.00 0.00 4.44
442 443 4.093514 TCTGCGACGAGTAATTTAGAACG 58.906 43.478 0.00 0.00 0.00 3.95
443 444 6.385537 TTTCTGCGACGAGTAATTTAGAAC 57.614 37.500 0.00 0.00 0.00 3.01
444 445 6.035650 CCATTTCTGCGACGAGTAATTTAGAA 59.964 38.462 0.00 0.00 0.00 2.10
445 446 5.518847 CCATTTCTGCGACGAGTAATTTAGA 59.481 40.000 0.00 0.00 0.00 2.10
446 447 5.518847 TCCATTTCTGCGACGAGTAATTTAG 59.481 40.000 0.00 0.00 0.00 1.85
447 448 5.412640 TCCATTTCTGCGACGAGTAATTTA 58.587 37.500 0.00 0.00 0.00 1.40
448 449 4.250464 TCCATTTCTGCGACGAGTAATTT 58.750 39.130 0.00 0.00 0.00 1.82
449 450 3.857052 TCCATTTCTGCGACGAGTAATT 58.143 40.909 0.00 0.00 0.00 1.40
450 451 3.520290 TCCATTTCTGCGACGAGTAAT 57.480 42.857 0.00 0.00 0.00 1.89
451 452 3.186909 CATCCATTTCTGCGACGAGTAA 58.813 45.455 0.00 0.00 0.00 2.24
452 453 2.165641 ACATCCATTTCTGCGACGAGTA 59.834 45.455 0.00 0.00 0.00 2.59
453 454 1.066858 ACATCCATTTCTGCGACGAGT 60.067 47.619 0.00 0.00 0.00 4.18
454 455 1.645034 ACATCCATTTCTGCGACGAG 58.355 50.000 0.00 0.00 0.00 4.18
455 456 2.951457 TACATCCATTTCTGCGACGA 57.049 45.000 0.00 0.00 0.00 4.20
456 457 3.384668 AGATACATCCATTTCTGCGACG 58.615 45.455 0.00 0.00 0.00 5.12
457 458 6.844696 TTTAGATACATCCATTTCTGCGAC 57.155 37.500 0.00 0.00 0.00 5.19
458 459 7.047891 AGTTTTAGATACATCCATTTCTGCGA 58.952 34.615 0.00 0.00 0.00 5.10
459 460 7.251704 AGTTTTAGATACATCCATTTCTGCG 57.748 36.000 0.00 0.00 0.00 5.18
487 488 8.409371 CGCAGGTATGAATGTATCTAGATGTAT 58.591 37.037 15.79 6.61 0.00 2.29
488 489 7.610305 TCGCAGGTATGAATGTATCTAGATGTA 59.390 37.037 15.79 4.44 0.00 2.29
489 490 6.434340 TCGCAGGTATGAATGTATCTAGATGT 59.566 38.462 15.79 0.00 0.00 3.06
490 491 6.749578 GTCGCAGGTATGAATGTATCTAGATG 59.250 42.308 15.79 0.00 0.00 2.90
491 492 6.434340 TGTCGCAGGTATGAATGTATCTAGAT 59.566 38.462 10.73 10.73 0.00 1.98
492 493 5.768164 TGTCGCAGGTATGAATGTATCTAGA 59.232 40.000 0.00 0.00 0.00 2.43
493 494 6.013842 TGTCGCAGGTATGAATGTATCTAG 57.986 41.667 0.00 0.00 0.00 2.43
494 495 6.040504 ACTTGTCGCAGGTATGAATGTATCTA 59.959 38.462 0.00 0.00 0.00 1.98
495 496 4.937201 TGTCGCAGGTATGAATGTATCT 57.063 40.909 0.00 0.00 0.00 1.98
496 497 5.050490 ACTTGTCGCAGGTATGAATGTATC 58.950 41.667 0.00 0.00 0.00 2.24
497 498 5.023533 ACTTGTCGCAGGTATGAATGTAT 57.976 39.130 0.00 0.00 0.00 2.29
498 499 4.465632 ACTTGTCGCAGGTATGAATGTA 57.534 40.909 0.00 0.00 0.00 2.29
499 500 3.334583 ACTTGTCGCAGGTATGAATGT 57.665 42.857 0.00 0.00 0.00 2.71
500 501 4.870426 AGTTACTTGTCGCAGGTATGAATG 59.130 41.667 3.46 0.00 0.00 2.67
501 502 5.086104 AGTTACTTGTCGCAGGTATGAAT 57.914 39.130 3.46 0.00 0.00 2.57
502 503 4.491676 GAGTTACTTGTCGCAGGTATGAA 58.508 43.478 3.46 0.00 0.00 2.57
503 504 3.427098 CGAGTTACTTGTCGCAGGTATGA 60.427 47.826 3.46 0.00 0.00 2.15
504 505 2.852413 CGAGTTACTTGTCGCAGGTATG 59.148 50.000 3.46 0.00 0.00 2.39
505 506 2.159282 CCGAGTTACTTGTCGCAGGTAT 60.159 50.000 0.00 0.00 34.78 2.73
506 507 1.200716 CCGAGTTACTTGTCGCAGGTA 59.799 52.381 0.00 0.00 34.78 3.08
507 508 0.038526 CCGAGTTACTTGTCGCAGGT 60.039 55.000 0.00 0.91 34.78 4.00
508 509 0.242825 TCCGAGTTACTTGTCGCAGG 59.757 55.000 0.00 0.00 34.78 4.85
509 510 1.719780 GTTCCGAGTTACTTGTCGCAG 59.280 52.381 0.00 0.00 34.78 5.18
510 511 1.774639 GTTCCGAGTTACTTGTCGCA 58.225 50.000 0.00 0.00 34.78 5.10
511 512 0.706729 CGTTCCGAGTTACTTGTCGC 59.293 55.000 0.00 0.00 34.78 5.19
512 513 1.069022 TCCGTTCCGAGTTACTTGTCG 60.069 52.381 0.00 1.44 35.91 4.35
513 514 2.227388 TCTCCGTTCCGAGTTACTTGTC 59.773 50.000 0.00 0.00 0.00 3.18
514 515 2.228343 CTCTCCGTTCCGAGTTACTTGT 59.772 50.000 0.00 0.00 0.00 3.16
515 516 2.486982 TCTCTCCGTTCCGAGTTACTTG 59.513 50.000 0.00 0.00 0.00 3.16
516 517 2.487372 GTCTCTCCGTTCCGAGTTACTT 59.513 50.000 0.00 0.00 0.00 2.24
517 518 2.083002 GTCTCTCCGTTCCGAGTTACT 58.917 52.381 0.00 0.00 0.00 2.24
518 519 2.083002 AGTCTCTCCGTTCCGAGTTAC 58.917 52.381 0.00 0.00 0.00 2.50
519 520 2.486472 AGTCTCTCCGTTCCGAGTTA 57.514 50.000 0.00 0.00 0.00 2.24
520 521 2.486472 TAGTCTCTCCGTTCCGAGTT 57.514 50.000 0.00 0.00 0.00 3.01
521 522 2.713863 ATAGTCTCTCCGTTCCGAGT 57.286 50.000 0.00 0.00 0.00 4.18
522 523 4.815308 TCTAAATAGTCTCTCCGTTCCGAG 59.185 45.833 0.00 0.00 0.00 4.63
523 524 4.774124 TCTAAATAGTCTCTCCGTTCCGA 58.226 43.478 0.00 0.00 0.00 4.55
524 525 5.496133 TTCTAAATAGTCTCTCCGTTCCG 57.504 43.478 0.00 0.00 0.00 4.30
525 526 5.742926 CGTTTCTAAATAGTCTCTCCGTTCC 59.257 44.000 0.00 0.00 0.00 3.62
526 527 5.742926 CCGTTTCTAAATAGTCTCTCCGTTC 59.257 44.000 0.00 0.00 0.00 3.95
527 528 5.416952 TCCGTTTCTAAATAGTCTCTCCGTT 59.583 40.000 0.00 0.00 0.00 4.44
528 529 4.946157 TCCGTTTCTAAATAGTCTCTCCGT 59.054 41.667 0.00 0.00 0.00 4.69
529 530 5.496133 TCCGTTTCTAAATAGTCTCTCCG 57.504 43.478 0.00 0.00 0.00 4.63
530 531 5.221283 CCCTCCGTTTCTAAATAGTCTCTCC 60.221 48.000 0.00 0.00 0.00 3.71
531 532 5.593502 TCCCTCCGTTTCTAAATAGTCTCTC 59.406 44.000 0.00 0.00 0.00 3.20
532 533 5.516984 TCCCTCCGTTTCTAAATAGTCTCT 58.483 41.667 0.00 0.00 0.00 3.10
533 534 5.360429 ACTCCCTCCGTTTCTAAATAGTCTC 59.640 44.000 0.00 0.00 0.00 3.36
534 535 5.270794 ACTCCCTCCGTTTCTAAATAGTCT 58.729 41.667 0.00 0.00 0.00 3.24
535 536 5.595257 ACTCCCTCCGTTTCTAAATAGTC 57.405 43.478 0.00 0.00 0.00 2.59
536 537 5.068855 GCTACTCCCTCCGTTTCTAAATAGT 59.931 44.000 0.00 0.00 0.00 2.12
537 538 5.068723 TGCTACTCCCTCCGTTTCTAAATAG 59.931 44.000 0.00 0.00 0.00 1.73
538 539 4.957954 TGCTACTCCCTCCGTTTCTAAATA 59.042 41.667 0.00 0.00 0.00 1.40
539 540 3.773119 TGCTACTCCCTCCGTTTCTAAAT 59.227 43.478 0.00 0.00 0.00 1.40
540 541 3.167485 TGCTACTCCCTCCGTTTCTAAA 58.833 45.455 0.00 0.00 0.00 1.85
541 542 2.811410 TGCTACTCCCTCCGTTTCTAA 58.189 47.619 0.00 0.00 0.00 2.10
542 543 2.519771 TGCTACTCCCTCCGTTTCTA 57.480 50.000 0.00 0.00 0.00 2.10
543 544 1.640917 TTGCTACTCCCTCCGTTTCT 58.359 50.000 0.00 0.00 0.00 2.52
544 545 2.467566 TTTGCTACTCCCTCCGTTTC 57.532 50.000 0.00 0.00 0.00 2.78
545 546 3.434940 AATTTGCTACTCCCTCCGTTT 57.565 42.857 0.00 0.00 0.00 3.60
546 547 3.434940 AAATTTGCTACTCCCTCCGTT 57.565 42.857 0.00 0.00 0.00 4.44
547 548 3.434940 AAAATTTGCTACTCCCTCCGT 57.565 42.857 0.00 0.00 0.00 4.69
606 607 0.250510 TGGTGTGTGTGTGTGTGTGT 60.251 50.000 0.00 0.00 0.00 3.72
609 610 0.447406 CACTGGTGTGTGTGTGTGTG 59.553 55.000 0.00 0.00 39.24 3.82
816 897 1.848652 TATATAGCGCAGGGGAGGAC 58.151 55.000 11.47 0.00 0.00 3.85
817 898 2.667470 GATATATAGCGCAGGGGAGGA 58.333 52.381 11.47 0.00 0.00 3.71
825 907 2.667470 GGGAGAGGGATATATAGCGCA 58.333 52.381 11.47 0.00 0.00 6.09
874 956 1.677217 CGGAGCTGAGGAAGAAAAGGG 60.677 57.143 0.00 0.00 0.00 3.95
897 979 3.258290 GCTCTTACGCTCGCTGCC 61.258 66.667 0.00 0.00 38.78 4.85
898 980 3.611792 CGCTCTTACGCTCGCTGC 61.612 66.667 0.00 0.00 38.57 5.25
899 981 2.951745 CCGCTCTTACGCTCGCTG 60.952 66.667 0.00 0.00 0.00 5.18
900 982 4.856607 GCCGCTCTTACGCTCGCT 62.857 66.667 0.00 0.00 0.00 4.93
902 984 4.831307 ACGCCGCTCTTACGCTCG 62.831 66.667 0.00 0.00 34.97 5.03
903 985 3.248171 CACGCCGCTCTTACGCTC 61.248 66.667 0.00 0.00 0.00 5.03
907 989 3.248171 CTCGCACGCCGCTCTTAC 61.248 66.667 0.00 0.00 39.08 2.34
937 1030 1.005156 TCATGCACGCACACTGCTA 60.005 52.632 0.00 0.00 42.25 3.49
958 1051 1.421410 CTAAACTACAGCAGCGGCCG 61.421 60.000 24.05 24.05 42.56 6.13
962 1055 4.921515 TCTGTAAACTAAACTACAGCAGCG 59.078 41.667 4.69 0.00 43.10 5.18
989 1082 3.142162 CATGCATGGCCGGCAGAA 61.142 61.111 30.85 14.01 45.68 3.02
1921 2017 4.801147 ATGATGGATCGAACGAATTGTG 57.199 40.909 0.12 0.00 0.00 3.33
1929 2026 5.406780 GGACAATGTCTATGATGGATCGAAC 59.593 44.000 13.53 0.00 32.47 3.95
1945 2042 2.277008 AGGAGGAGGATGGACAATGT 57.723 50.000 0.00 0.00 0.00 2.71
1970 2067 9.658799 TCTTGGTTTCACATTTTTGTTTTATGA 57.341 25.926 0.00 0.00 0.00 2.15
1973 2070 9.658799 TCATCTTGGTTTCACATTTTTGTTTTA 57.341 25.926 0.00 0.00 0.00 1.52
2001 2098 5.333492 CGGAGAAAATTGTTACTACGTTGCA 60.333 40.000 0.00 0.00 32.87 4.08
2048 2148 8.964420 AATTATATTCAATTATGCCGTTTCCG 57.036 30.769 0.00 0.00 0.00 4.30
2118 2223 3.259064 CTGAGCAATGCAAATTTCAGGG 58.741 45.455 8.35 0.00 0.00 4.45
2134 2239 2.067766 CTCAGTGAACTTGAGCTGAGC 58.932 52.381 0.00 0.00 45.28 4.26
2159 2269 8.461222 ACACATGTATACATCCAAAATTGTGAG 58.539 33.333 26.70 12.55 33.61 3.51
2218 2337 9.661954 TGTCTCTCTAATCCCTAACTAATCAAT 57.338 33.333 0.00 0.00 0.00 2.57
2238 2357 0.399949 TTCCACCCCACAGTGTCTCT 60.400 55.000 0.00 0.00 35.93 3.10
2285 2404 0.107831 GCTACACCACACCACTGGAA 59.892 55.000 0.71 0.00 35.04 3.53
2349 2468 5.882557 GGTGGCAATATTTTTCTCTCTCTCA 59.117 40.000 0.00 0.00 0.00 3.27
2438 2557 6.495181 TGGCAAGGAAACAATAAACCTAATCA 59.505 34.615 0.00 0.00 32.06 2.57
2444 2564 6.484977 TGAATTTGGCAAGGAAACAATAAACC 59.515 34.615 0.00 0.00 0.00 3.27
2448 2568 5.988561 GTGTGAATTTGGCAAGGAAACAATA 59.011 36.000 0.00 0.00 0.00 1.90
2456 2576 5.587388 ATGATAGTGTGAATTTGGCAAGG 57.413 39.130 0.00 0.00 0.00 3.61
2511 2631 0.338120 AGGGGAGGAAGAGGTGAGAG 59.662 60.000 0.00 0.00 0.00 3.20
2523 2643 3.244911 TGCTTTTAGAAGTCAAGGGGAGG 60.245 47.826 0.00 0.00 35.25 4.30
2526 2646 5.069119 ACTTTTGCTTTTAGAAGTCAAGGGG 59.931 40.000 0.00 0.00 33.58 4.79
2561 2765 8.221801 TCACATTCGCACAAATTAAACATTAC 57.778 30.769 0.00 0.00 0.00 1.89
2579 2790 6.560253 AACATGTCCAAAGTACTCACATTC 57.440 37.500 0.00 0.00 0.00 2.67
2590 2801 7.972527 TCACATTTTTCAAAACATGTCCAAAG 58.027 30.769 0.00 0.00 37.24 2.77
2596 2807 5.524646 CCAGCTCACATTTTTCAAAACATGT 59.475 36.000 0.00 0.00 39.22 3.21
2597 2808 5.754406 TCCAGCTCACATTTTTCAAAACATG 59.246 36.000 0.00 0.00 33.47 3.21
2604 2816 2.886523 CTGGTCCAGCTCACATTTTTCA 59.113 45.455 5.79 0.00 0.00 2.69
2605 2817 3.565905 CTGGTCCAGCTCACATTTTTC 57.434 47.619 5.79 0.00 0.00 2.29
2631 2843 8.560374 GTCAAATAACTATATTGAAGCTGGTCC 58.440 37.037 0.00 0.00 32.06 4.46
2754 2990 1.522668 CCGCACATTTCCAGACTCAA 58.477 50.000 0.00 0.00 0.00 3.02
2800 3036 8.099364 TCAAGTAAATTGAACATTCTCACCTC 57.901 34.615 0.00 0.00 45.00 3.85
2823 3066 1.974957 TCCCCGAAACTCTCATGTTCA 59.025 47.619 0.00 0.00 0.00 3.18
2824 3067 2.233922 TCTCCCCGAAACTCTCATGTTC 59.766 50.000 0.00 0.00 0.00 3.18
2840 3083 9.185680 AGTACCATATATTGTTTGTTTTCTCCC 57.814 33.333 0.00 0.00 0.00 4.30
2862 3108 1.003851 TCTTGCGGCGCATTAAGTAC 58.996 50.000 36.69 1.21 38.76 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.