Multiple sequence alignment - TraesCS1A01G024200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G024200 chr1A 100.000 7648 0 0 1 7648 11826123 11818476 0.000000e+00 14124.0
1 TraesCS1A01G024200 chr1D 95.553 4115 143 19 3118 7212 10183704 10179610 0.000000e+00 6549.0
2 TraesCS1A01G024200 chr1D 95.274 1312 40 6 1824 3120 10185090 10183786 0.000000e+00 2060.0
3 TraesCS1A01G024200 chr1D 90.677 1255 65 15 730 1971 10186307 10185092 0.000000e+00 1622.0
4 TraesCS1A01G024200 chr1D 90.889 461 13 2 7192 7648 10179572 10179137 6.610000e-165 592.0
5 TraesCS1A01G024200 chr1D 94.444 36 1 1 639 674 10186364 10186330 4.000000e-03 54.7
6 TraesCS1A01G024200 chr1B 94.398 3731 117 34 3118 6816 15101192 15097522 0.000000e+00 5648.0
7 TraesCS1A01G024200 chr1B 89.041 584 54 2 1 575 48010021 48009439 0.000000e+00 715.0
8 TraesCS1A01G024200 chr1B 94.386 285 9 4 2841 3118 15101560 15101276 1.520000e-116 431.0
9 TraesCS1A01G024200 chr4B 93.648 3133 115 37 1076 4170 57256810 57259896 0.000000e+00 4606.0
10 TraesCS1A01G024200 chr4B 95.773 2815 77 19 4172 6974 57260020 57262804 0.000000e+00 4501.0
11 TraesCS1A01G024200 chr4B 94.503 382 9 2 7267 7648 57262808 57263177 5.150000e-161 579.0
12 TraesCS1A01G024200 chr4B 99.200 125 1 0 7318 7442 57279637 57279761 7.720000e-55 226.0
13 TraesCS1A01G024200 chr4B 80.083 241 40 8 4827 5065 658581151 658580917 1.020000e-38 172.0
14 TraesCS1A01G024200 chr4B 80.478 251 19 9 644 879 57256079 57256314 1.710000e-36 165.0
15 TraesCS1A01G024200 chr4B 92.727 110 7 1 941 1049 57256325 57256434 2.860000e-34 158.0
16 TraesCS1A01G024200 chr4B 98.000 50 1 0 4172 4221 57259944 57259895 3.800000e-13 87.9
17 TraesCS1A01G024200 chr4A 90.753 584 45 3 1 575 485710360 485709777 0.000000e+00 771.0
18 TraesCS1A01G024200 chr6D 90.051 583 49 1 1 574 356796073 356796655 0.000000e+00 747.0
19 TraesCS1A01G024200 chrUn 89.041 584 54 2 1 575 3382344 3381762 0.000000e+00 715.0
20 TraesCS1A01G024200 chr2B 87.692 585 61 5 1 575 773822017 773822600 0.000000e+00 671.0
21 TraesCS1A01G024200 chr2B 78.766 697 109 27 4827 5510 436031631 436032301 1.520000e-116 431.0
22 TraesCS1A01G024200 chr2B 90.741 54 4 1 583 636 503985581 503985529 3.830000e-08 71.3
23 TraesCS1A01G024200 chr5B 91.123 383 20 5 911 1279 34317127 34316745 2.460000e-139 507.0
24 TraesCS1A01G024200 chr5B 78.902 346 73 0 1 346 406535959 406536304 1.280000e-57 235.0
25 TraesCS1A01G024200 chr2D 80.650 646 99 18 4870 5510 367232264 367232888 1.930000e-130 477.0
26 TraesCS1A01G024200 chr2D 78.559 583 111 10 1 573 262446513 262447091 9.370000e-99 372.0
27 TraesCS1A01G024200 chr2A 81.015 532 82 15 4827 5353 497445433 497445950 9.240000e-109 405.0
28 TraesCS1A01G024200 chr3D 81.092 238 37 7 4827 5061 594868996 594868764 4.710000e-42 183.0
29 TraesCS1A01G024200 chr3D 80.672 238 41 5 4828 5063 362727937 362727703 6.100000e-41 180.0
30 TraesCS1A01G024200 chr7B 79.032 186 19 9 5531 5697 22613995 22613811 8.110000e-20 110.0
31 TraesCS1A01G024200 chr7B 78.610 187 19 10 5531 5697 22793382 22793197 3.780000e-18 104.0
32 TraesCS1A01G024200 chr7B 77.957 186 21 9 5531 5697 22901288 22901104 1.760000e-16 99.0
33 TraesCS1A01G024200 chr3A 76.705 176 25 7 5536 5698 52373990 52373818 4.920000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G024200 chr1A 11818476 11826123 7647 True 14124.00 14124 100.0000 1 7648 1 chr1A.!!$R1 7647
1 TraesCS1A01G024200 chr1D 10179137 10186364 7227 True 2175.54 6549 93.3674 639 7648 5 chr1D.!!$R1 7009
2 TraesCS1A01G024200 chr1B 15097522 15101560 4038 True 3039.50 5648 94.3920 2841 6816 2 chr1B.!!$R2 3975
3 TraesCS1A01G024200 chr1B 48009439 48010021 582 True 715.00 715 89.0410 1 575 1 chr1B.!!$R1 574
4 TraesCS1A01G024200 chr4B 57256079 57263177 7098 False 2001.80 4606 91.4258 644 7648 5 chr4B.!!$F2 7004
5 TraesCS1A01G024200 chr4A 485709777 485710360 583 True 771.00 771 90.7530 1 575 1 chr4A.!!$R1 574
6 TraesCS1A01G024200 chr6D 356796073 356796655 582 False 747.00 747 90.0510 1 574 1 chr6D.!!$F1 573
7 TraesCS1A01G024200 chrUn 3381762 3382344 582 True 715.00 715 89.0410 1 575 1 chrUn.!!$R1 574
8 TraesCS1A01G024200 chr2B 773822017 773822600 583 False 671.00 671 87.6920 1 575 1 chr2B.!!$F2 574
9 TraesCS1A01G024200 chr2B 436031631 436032301 670 False 431.00 431 78.7660 4827 5510 1 chr2B.!!$F1 683
10 TraesCS1A01G024200 chr2D 367232264 367232888 624 False 477.00 477 80.6500 4870 5510 1 chr2D.!!$F2 640
11 TraesCS1A01G024200 chr2D 262446513 262447091 578 False 372.00 372 78.5590 1 573 1 chr2D.!!$F1 572
12 TraesCS1A01G024200 chr2A 497445433 497445950 517 False 405.00 405 81.0150 4827 5353 1 chr2A.!!$F1 526

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
591 601 0.031414 TGGCCCTAACTCCTCCTACC 60.031 60.0 0.00 0.00 0.00 3.18 F
679 689 0.035739 TCCCAGGGCACGACTTAAAC 59.964 55.0 0.00 0.00 0.00 2.01 F
1290 1672 0.750249 TCGTCAGTGAAAGAGGCACA 59.250 50.0 0.00 0.00 38.70 4.57 F
1980 2510 0.109412 GTGTTCCACTCGAGTACCCG 60.109 60.0 19.57 5.64 0.00 5.28 F
3455 4095 0.165944 GTAGGTGTGCATGCGTTCAC 59.834 55.0 23.06 23.06 0.00 3.18 F
3572 4212 0.394192 TCCATCTTCTATGGCAGGCG 59.606 55.0 0.00 0.00 39.01 5.52 F
5280 6072 0.881118 ACAACAGCGGCACCATAAAG 59.119 50.0 1.45 0.00 0.00 1.85 F
6386 7206 0.692476 TGGAGGTGAAGATGTGTGGG 59.308 55.0 0.00 0.00 0.00 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1605 1999 0.394565 AGGATCATACAGAAGCCGGC 59.605 55.000 21.89 21.89 31.94 6.13 R
1971 2501 0.457337 CGTCTTTTCCCGGGTACTCG 60.457 60.000 22.86 8.57 0.00 4.18 R
2354 2893 1.065564 GCAGGTGGAGATCTTTCAGCT 60.066 52.381 19.42 19.42 39.45 4.24 R
3572 4212 1.897560 AAGCAGCTACAAACCTGTCC 58.102 50.000 0.00 0.00 36.96 4.02 R
5210 5994 1.068588 CGTGATCGATCCCCTTTGCTA 59.931 52.381 22.31 0.00 39.71 3.49 R
5444 6236 1.153168 CGAGCCGGACAAATCCCAT 60.153 57.895 5.05 0.00 42.83 4.00 R
6453 7273 0.329596 GGATGTTTCCCAGCAGAGGT 59.670 55.000 0.00 0.00 35.84 3.85 R
7218 8107 2.091541 CCCACATGTTGGTATGGTGAC 58.908 52.381 7.82 0.00 45.25 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
98 99 2.404083 ACTGCCAAAGTGAACCACG 58.596 52.632 0.00 0.00 39.64 4.94
148 149 2.417516 CTCGTGATGTAGCCCCCG 59.582 66.667 0.00 0.00 0.00 5.73
149 150 3.151710 TCGTGATGTAGCCCCCGG 61.152 66.667 0.00 0.00 0.00 5.73
164 165 4.864334 CGGGCCCTCTGCATCACC 62.864 72.222 22.43 0.00 43.89 4.02
172 173 1.280133 CCTCTGCATCACCTTCTCCAA 59.720 52.381 0.00 0.00 0.00 3.53
176 177 1.421268 TGCATCACCTTCTCCAACACT 59.579 47.619 0.00 0.00 0.00 3.55
253 254 2.172082 CCTTGGGCAAGATCTGATCTGA 59.828 50.000 20.20 4.63 40.13 3.27
313 314 1.237163 CCATCCCTCCCAGCCTAGA 59.763 63.158 0.00 0.00 0.00 2.43
444 454 2.124942 CCTGCTTCTCCTTCGCCC 60.125 66.667 0.00 0.00 0.00 6.13
575 585 2.109181 CCTAACCCTAGCGCTGGC 59.891 66.667 22.90 0.00 40.37 4.85
576 586 2.109181 CTAACCCTAGCGCTGGCC 59.891 66.667 22.90 0.00 41.24 5.36
577 587 3.462199 CTAACCCTAGCGCTGGCCC 62.462 68.421 22.90 0.00 41.24 5.80
578 588 3.995809 TAACCCTAGCGCTGGCCCT 62.996 63.158 22.90 6.06 41.24 5.19
579 589 2.592778 TAACCCTAGCGCTGGCCCTA 62.593 60.000 22.90 5.00 41.24 3.53
580 590 3.161450 CCCTAGCGCTGGCCCTAA 61.161 66.667 22.90 0.00 41.24 2.69
581 591 2.109181 CCTAGCGCTGGCCCTAAC 59.891 66.667 22.90 0.00 41.24 2.34
582 592 2.435693 CCTAGCGCTGGCCCTAACT 61.436 63.158 22.90 0.00 41.24 2.24
583 593 1.068250 CTAGCGCTGGCCCTAACTC 59.932 63.158 22.90 0.00 41.24 3.01
584 594 2.370647 CTAGCGCTGGCCCTAACTCC 62.371 65.000 22.90 0.00 41.24 3.85
585 595 2.873557 TAGCGCTGGCCCTAACTCCT 62.874 60.000 22.90 0.00 41.24 3.69
586 596 2.501610 CGCTGGCCCTAACTCCTC 59.498 66.667 0.00 0.00 0.00 3.71
587 597 2.911928 GCTGGCCCTAACTCCTCC 59.088 66.667 0.00 0.00 0.00 4.30
588 598 1.690985 GCTGGCCCTAACTCCTCCT 60.691 63.158 0.00 0.00 0.00 3.69
589 599 0.398664 GCTGGCCCTAACTCCTCCTA 60.399 60.000 0.00 0.00 0.00 2.94
590 600 1.415200 CTGGCCCTAACTCCTCCTAC 58.585 60.000 0.00 0.00 0.00 3.18
591 601 0.031414 TGGCCCTAACTCCTCCTACC 60.031 60.000 0.00 0.00 0.00 3.18
592 602 0.265254 GGCCCTAACTCCTCCTACCT 59.735 60.000 0.00 0.00 0.00 3.08
593 603 1.502474 GGCCCTAACTCCTCCTACCTA 59.498 57.143 0.00 0.00 0.00 3.08
594 604 2.112151 GGCCCTAACTCCTCCTACCTAT 59.888 54.545 0.00 0.00 0.00 2.57
595 605 3.433343 GCCCTAACTCCTCCTACCTATC 58.567 54.545 0.00 0.00 0.00 2.08
596 606 3.181420 GCCCTAACTCCTCCTACCTATCA 60.181 52.174 0.00 0.00 0.00 2.15
597 607 4.694751 GCCCTAACTCCTCCTACCTATCAA 60.695 50.000 0.00 0.00 0.00 2.57
598 608 5.656420 CCCTAACTCCTCCTACCTATCAAT 58.344 45.833 0.00 0.00 0.00 2.57
599 609 5.482175 CCCTAACTCCTCCTACCTATCAATG 59.518 48.000 0.00 0.00 0.00 2.82
600 610 4.965200 AACTCCTCCTACCTATCAATGC 57.035 45.455 0.00 0.00 0.00 3.56
601 611 3.928754 ACTCCTCCTACCTATCAATGCA 58.071 45.455 0.00 0.00 0.00 3.96
602 612 4.298626 ACTCCTCCTACCTATCAATGCAA 58.701 43.478 0.00 0.00 0.00 4.08
603 613 4.910304 ACTCCTCCTACCTATCAATGCAAT 59.090 41.667 0.00 0.00 0.00 3.56
604 614 5.221803 ACTCCTCCTACCTATCAATGCAATG 60.222 44.000 0.00 0.00 0.00 2.82
605 615 4.907269 TCCTCCTACCTATCAATGCAATGA 59.093 41.667 6.97 6.97 0.00 2.57
606 616 5.549228 TCCTCCTACCTATCAATGCAATGAT 59.451 40.000 20.55 20.55 42.52 2.45
607 617 6.730507 TCCTCCTACCTATCAATGCAATGATA 59.269 38.462 20.58 20.58 40.44 2.15
608 618 6.820656 CCTCCTACCTATCAATGCAATGATAC 59.179 42.308 18.52 0.00 40.44 2.24
609 619 6.398095 TCCTACCTATCAATGCAATGATACG 58.602 40.000 18.52 16.68 40.44 3.06
610 620 6.014584 TCCTACCTATCAATGCAATGATACGT 60.015 38.462 22.02 22.02 40.44 3.57
611 621 6.650807 CCTACCTATCAATGCAATGATACGTT 59.349 38.462 22.95 12.86 40.44 3.99
612 622 6.545504 ACCTATCAATGCAATGATACGTTC 57.454 37.500 18.52 0.00 40.44 3.95
613 623 5.470098 ACCTATCAATGCAATGATACGTTCC 59.530 40.000 18.52 0.00 40.44 3.62
614 624 4.836125 ATCAATGCAATGATACGTTCCC 57.164 40.909 15.68 0.00 38.25 3.97
615 625 3.615155 TCAATGCAATGATACGTTCCCA 58.385 40.909 0.00 0.00 0.00 4.37
616 626 3.627123 TCAATGCAATGATACGTTCCCAG 59.373 43.478 0.00 0.00 0.00 4.45
617 627 2.036958 TGCAATGATACGTTCCCAGG 57.963 50.000 0.00 0.00 0.00 4.45
618 628 0.663153 GCAATGATACGTTCCCAGGC 59.337 55.000 0.00 0.00 0.00 4.85
619 629 2.016604 GCAATGATACGTTCCCAGGCA 61.017 52.381 0.00 0.00 0.00 4.75
620 630 2.575532 CAATGATACGTTCCCAGGCAT 58.424 47.619 0.00 0.00 0.00 4.40
621 631 3.738982 CAATGATACGTTCCCAGGCATA 58.261 45.455 0.00 0.00 0.00 3.14
622 632 4.326826 CAATGATACGTTCCCAGGCATAT 58.673 43.478 0.00 0.00 0.00 1.78
623 633 4.640771 ATGATACGTTCCCAGGCATATT 57.359 40.909 0.00 0.00 0.00 1.28
624 634 3.738982 TGATACGTTCCCAGGCATATTG 58.261 45.455 0.00 0.00 0.00 1.90
625 635 3.389656 TGATACGTTCCCAGGCATATTGA 59.610 43.478 0.00 0.00 0.00 2.57
626 636 2.799126 ACGTTCCCAGGCATATTGAA 57.201 45.000 0.00 0.00 0.00 2.69
627 637 2.643551 ACGTTCCCAGGCATATTGAAG 58.356 47.619 0.00 0.00 0.00 3.02
628 638 1.949525 CGTTCCCAGGCATATTGAAGG 59.050 52.381 0.00 0.00 0.00 3.46
629 639 2.421388 CGTTCCCAGGCATATTGAAGGA 60.421 50.000 0.00 0.00 0.00 3.36
630 640 3.631250 GTTCCCAGGCATATTGAAGGAA 58.369 45.455 0.00 0.00 0.00 3.36
631 641 4.023291 GTTCCCAGGCATATTGAAGGAAA 58.977 43.478 0.00 0.00 33.93 3.13
632 642 4.329638 TCCCAGGCATATTGAAGGAAAA 57.670 40.909 0.00 0.00 0.00 2.29
633 643 4.682563 TCCCAGGCATATTGAAGGAAAAA 58.317 39.130 0.00 0.00 0.00 1.94
667 677 0.839946 ATGAAATCGGAGTCCCAGGG 59.160 55.000 2.80 0.00 0.00 4.45
668 678 1.153147 GAAATCGGAGTCCCAGGGC 60.153 63.158 0.00 0.00 0.00 5.19
673 683 4.083862 GGAGTCCCAGGGCACGAC 62.084 72.222 0.00 0.00 0.00 4.34
674 684 2.997897 GAGTCCCAGGGCACGACT 60.998 66.667 0.00 0.00 39.54 4.18
675 685 2.526873 AGTCCCAGGGCACGACTT 60.527 61.111 0.00 0.00 33.01 3.01
676 686 1.229082 AGTCCCAGGGCACGACTTA 60.229 57.895 0.00 0.00 33.01 2.24
677 687 0.834687 AGTCCCAGGGCACGACTTAA 60.835 55.000 0.00 0.00 33.01 1.85
679 689 0.035739 TCCCAGGGCACGACTTAAAC 59.964 55.000 0.00 0.00 0.00 2.01
681 691 0.872388 CCAGGGCACGACTTAAACAC 59.128 55.000 0.00 0.00 0.00 3.32
690 700 3.739300 CACGACTTAAACACAACCGAGAT 59.261 43.478 0.00 0.00 0.00 2.75
691 701 4.919168 CACGACTTAAACACAACCGAGATA 59.081 41.667 0.00 0.00 0.00 1.98
692 702 4.919754 ACGACTTAAACACAACCGAGATAC 59.080 41.667 0.00 0.00 0.00 2.24
1055 1411 2.333926 CCCTCGCGCATTATCGATTTA 58.666 47.619 8.75 0.00 33.98 1.40
1068 1424 7.118971 GCATTATCGATTTATCTCTGCTTCCTT 59.881 37.037 1.71 0.00 0.00 3.36
1089 1463 6.202188 TCCTTTCGTTTTTACTGCTCTGTTAG 59.798 38.462 0.00 0.00 0.00 2.34
1190 1570 3.181429 ACATTGGACAGTGAAATGGGTCT 60.181 43.478 16.61 0.82 35.95 3.85
1191 1571 2.859165 TGGACAGTGAAATGGGTCTC 57.141 50.000 0.00 0.00 0.00 3.36
1290 1672 0.750249 TCGTCAGTGAAAGAGGCACA 59.250 50.000 0.00 0.00 38.70 4.57
1291 1673 1.344438 TCGTCAGTGAAAGAGGCACAT 59.656 47.619 0.00 0.00 38.70 3.21
1294 1676 3.369147 CGTCAGTGAAAGAGGCACATAAG 59.631 47.826 0.00 0.00 38.70 1.73
1367 1752 1.534163 GGTAACCAACTCTTGTTCGGC 59.466 52.381 0.00 0.00 33.52 5.54
1371 1756 1.151668 CCAACTCTTGTTCGGCTCTG 58.848 55.000 0.00 0.00 33.52 3.35
1380 1765 1.412710 TGTTCGGCTCTGTCTTGAACT 59.587 47.619 5.19 0.00 39.61 3.01
1381 1766 2.626266 TGTTCGGCTCTGTCTTGAACTA 59.374 45.455 5.19 0.00 39.61 2.24
1605 1999 5.163581 CCCTTTTCTCTTGCCAACATATCTG 60.164 44.000 0.00 0.00 0.00 2.90
1606 2000 4.970662 TTTCTCTTGCCAACATATCTGC 57.029 40.909 0.00 0.00 0.00 4.26
1637 2031 7.597386 TCTGTATGATCCTTCTATCATTCACG 58.403 38.462 4.79 2.33 42.63 4.35
1642 2036 3.995199 TCCTTCTATCATTCACGGATGC 58.005 45.455 0.00 0.00 0.00 3.91
1645 2039 4.375272 CTTCTATCATTCACGGATGCAGT 58.625 43.478 0.00 0.00 0.00 4.40
1751 2146 2.185310 CTCCAGGGTTTCACCGAGGG 62.185 65.000 0.00 0.00 39.83 4.30
1768 2163 3.201290 GAGGGTCATACAGCATCAAGTG 58.799 50.000 0.00 0.00 33.38 3.16
1788 2183 2.813172 TGTATCTTACGTGTCGGTGTCA 59.187 45.455 0.00 0.00 0.00 3.58
1789 2184 2.342910 ATCTTACGTGTCGGTGTCAC 57.657 50.000 0.00 0.00 0.00 3.67
1830 2225 2.034687 TTCTGCCAAGCCTCAGCC 59.965 61.111 0.00 0.00 41.25 4.85
1835 2230 2.674380 CCAAGCCTCAGCCACCAC 60.674 66.667 0.00 0.00 41.25 4.16
1843 2238 1.284982 CTCAGCCACCACGTTTCTCG 61.285 60.000 0.00 0.00 46.00 4.04
1872 2402 1.308047 TGTCGTTGCAGCATGTTCTT 58.692 45.000 0.00 0.00 39.31 2.52
1909 2439 3.297830 TCTCAGTTTGCTTTCGATCGA 57.702 42.857 15.15 15.15 0.00 3.59
1912 2442 4.327357 TCTCAGTTTGCTTTCGATCGATTC 59.673 41.667 20.18 11.30 0.00 2.52
1961 2491 0.875728 CGGAGCTAGTCGTAGGGATG 59.124 60.000 0.00 0.00 0.00 3.51
1980 2510 0.109412 GTGTTCCACTCGAGTACCCG 60.109 60.000 19.57 5.64 0.00 5.28
2005 2535 4.813296 AAAGACGTTGAAATTTCTCGCT 57.187 36.364 24.54 20.61 0.00 4.93
2177 2707 5.007682 GGAACCAACTATTCCTGTTAAGCA 58.992 41.667 0.00 0.00 42.15 3.91
2225 2755 4.655649 AGGCTCATTTCCTTTGTTTCCTTT 59.344 37.500 0.00 0.00 0.00 3.11
2354 2893 3.114606 TCTATGTGGGAGCCAATTCTCA 58.885 45.455 0.00 0.00 34.18 3.27
2374 2913 1.065564 AGCTGAAAGATCTCCACCTGC 60.066 52.381 0.00 1.95 34.07 4.85
2535 3074 2.084546 CCTACACTGTAGGGCAAAAGC 58.915 52.381 23.20 0.00 0.00 3.51
2712 3251 0.698818 AGGACCACCATCCAACCTTC 59.301 55.000 0.00 0.00 41.73 3.46
2919 3460 8.593679 TCTCTGTATCCAACTATTTGTTCTTCA 58.406 33.333 0.00 0.00 36.63 3.02
2945 3487 3.671702 GCAAAGATGACAACTAAGGCTGC 60.672 47.826 0.00 0.00 0.00 5.25
3104 3654 3.228188 TCAGTTTTCCAATGCTCCAGT 57.772 42.857 0.00 0.00 0.00 4.00
3330 3966 5.275067 AGTTGCCATTCTTGTTTGCTTTA 57.725 34.783 0.00 0.00 0.00 1.85
3391 4031 6.560253 ATGTTTCAAAGTCCACATAGTGAC 57.440 37.500 0.00 0.00 35.23 3.67
3455 4095 0.165944 GTAGGTGTGCATGCGTTCAC 59.834 55.000 23.06 23.06 0.00 3.18
3572 4212 0.394192 TCCATCTTCTATGGCAGGCG 59.606 55.000 0.00 0.00 39.01 5.52
4184 4954 7.602517 ATTCTGTTTACTTGTCTGTATCAGC 57.397 36.000 0.00 0.00 31.48 4.26
4493 5263 2.169561 TGCCACCAAAGCGATATACTCA 59.830 45.455 0.00 0.00 0.00 3.41
4774 5545 5.552870 AATGGTCTTCTGTAGTGTCAGTT 57.447 39.130 0.00 0.00 36.85 3.16
4972 5754 2.544277 GCATCAGCTTTGACTTGCACAA 60.544 45.455 0.00 0.00 37.91 3.33
5020 5802 3.819368 CAACCTTTTGCAAAAATCCCCT 58.181 40.909 23.92 4.76 0.00 4.79
5063 5845 7.619302 TGAATTTTATTACCCCTCATCTTTGCT 59.381 33.333 0.00 0.00 0.00 3.91
5088 5870 5.356751 CGTATCATCTATTCCTCTCTCTGGG 59.643 48.000 0.00 0.00 0.00 4.45
5106 5888 1.915769 GCCTCCTCTCCACCTGTGT 60.916 63.158 0.00 0.00 0.00 3.72
5280 6072 0.881118 ACAACAGCGGCACCATAAAG 59.119 50.000 1.45 0.00 0.00 1.85
5444 6236 1.472552 CGTGGGACAACAAGTCTGTGA 60.473 52.381 0.00 0.00 46.72 3.58
5579 6373 2.026641 ACATGTGCAAGTCAAAGCTGT 58.973 42.857 0.00 0.00 0.00 4.40
5645 6445 9.469097 CTACCTAGAAGTGCATAGTATTAGGAT 57.531 37.037 14.78 6.01 32.65 3.24
5911 6719 7.556844 TCCTTGGTAAGCTTAACTTAGATGAG 58.443 38.462 21.73 8.38 41.56 2.90
5980 6789 6.698329 TCATGCTGATTTGTTCTGAAAAGTTG 59.302 34.615 0.00 0.00 0.00 3.16
6320 7140 2.476873 TCATCTTTCGTAGAGCGCTC 57.523 50.000 30.01 30.01 38.43 5.03
6347 7167 4.546456 GCGACGATAGAGTTGAATTTCACG 60.546 45.833 0.00 0.49 41.38 4.35
6386 7206 0.692476 TGGAGGTGAAGATGTGTGGG 59.308 55.000 0.00 0.00 0.00 4.61
6453 7273 2.666344 CGTGAGTGTGATCGGTTCGTTA 60.666 50.000 0.00 0.00 0.00 3.18
6593 7413 5.296283 CAGCCAAGAGAGAGAATACCATTTG 59.704 44.000 0.00 0.00 0.00 2.32
6687 7512 5.730296 AGTATGCAGAGTGTCAACTAACT 57.270 39.130 0.00 0.00 36.52 2.24
6693 7518 1.792949 GAGTGTCAACTAACTGCCACG 59.207 52.381 0.00 0.00 36.52 4.94
6842 7673 5.298276 GTGACCAAAACCTCAAACACATCTA 59.702 40.000 0.00 0.00 0.00 1.98
6870 7701 5.551305 AGGTTGCTTGCTAAATTTTTCCT 57.449 34.783 0.00 0.00 0.00 3.36
6985 7816 6.958255 TCCATAAGCATGATCATTGTTTACG 58.042 36.000 5.16 3.69 33.67 3.18
6991 7822 6.546395 AGCATGATCATTGTTTACGAAGTTC 58.454 36.000 5.16 0.00 37.78 3.01
7003 7834 2.810650 ACGAAGTTCCTATAGCTTGCG 58.189 47.619 0.00 2.62 37.78 4.85
7014 7845 2.701587 AGCTTGCGCTGTAAACACA 58.298 47.368 9.73 0.00 46.86 3.72
7117 7948 1.003928 TGCCTCAGTCTGTGAATGCAT 59.996 47.619 3.43 0.00 37.83 3.96
7118 7949 2.236893 TGCCTCAGTCTGTGAATGCATA 59.763 45.455 0.00 0.00 37.83 3.14
7119 7950 2.611292 GCCTCAGTCTGTGAATGCATAC 59.389 50.000 0.00 0.00 34.53 2.39
7120 7951 3.865446 CCTCAGTCTGTGAATGCATACA 58.135 45.455 0.00 0.00 33.60 2.29
7121 7952 4.256110 CCTCAGTCTGTGAATGCATACAA 58.744 43.478 0.00 0.00 33.60 2.41
7122 7953 4.331992 CCTCAGTCTGTGAATGCATACAAG 59.668 45.833 0.00 0.00 33.60 3.16
7123 7954 4.898320 TCAGTCTGTGAATGCATACAAGT 58.102 39.130 0.00 0.00 29.64 3.16
7124 7955 5.308014 TCAGTCTGTGAATGCATACAAGTT 58.692 37.500 0.00 0.00 29.64 2.66
7125 7956 5.409520 TCAGTCTGTGAATGCATACAAGTTC 59.590 40.000 0.00 0.00 29.64 3.01
7141 7972 6.578163 ACAAGTTCTACTCTCAGTTAGGTC 57.422 41.667 0.00 0.00 0.00 3.85
7228 8117 7.534723 TTGGATATACAGTAGTCACCATACC 57.465 40.000 0.00 0.00 0.00 2.73
7584 8477 9.383519 TCCAATAGTACTCTTCAAGCAATTAAG 57.616 33.333 0.00 0.00 0.00 1.85
7592 8485 7.588512 ACTCTTCAAGCAATTAAGATGACAAC 58.411 34.615 0.00 0.00 0.00 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
98 99 0.309612 ACATGGGCGACAACGTTTTC 59.690 50.000 0.00 0.00 41.98 2.29
148 149 2.900671 GAAGGTGATGCAGAGGGCCC 62.901 65.000 16.46 16.46 43.89 5.80
149 150 1.452833 GAAGGTGATGCAGAGGGCC 60.453 63.158 0.00 0.00 43.89 5.80
162 163 3.697166 ACAAAACAGTGTTGGAGAAGGT 58.303 40.909 9.79 0.00 0.00 3.50
164 165 5.743872 GCTAAACAAAACAGTGTTGGAGAAG 59.256 40.000 9.79 4.92 40.86 2.85
172 173 1.066454 GGCCGCTAAACAAAACAGTGT 59.934 47.619 0.00 0.00 0.00 3.55
176 177 0.589223 CGAGGCCGCTAAACAAAACA 59.411 50.000 4.53 0.00 0.00 2.83
203 204 3.565214 TCAGCGGTGGGGAAAGCA 61.565 61.111 15.67 0.00 0.00 3.91
313 314 2.418910 CCCACGTCGAGCCTCTCAT 61.419 63.158 0.00 0.00 0.00 2.90
444 454 2.647875 CGGAGCTATGGCGGAGAG 59.352 66.667 0.00 0.00 44.37 3.20
522 532 1.712018 CGGCGAGGATACAGTCGTGA 61.712 60.000 0.00 0.00 39.25 4.35
575 585 4.743705 TGATAGGTAGGAGGAGTTAGGG 57.256 50.000 0.00 0.00 0.00 3.53
576 586 5.046950 GCATTGATAGGTAGGAGGAGTTAGG 60.047 48.000 0.00 0.00 0.00 2.69
577 587 5.540337 TGCATTGATAGGTAGGAGGAGTTAG 59.460 44.000 0.00 0.00 0.00 2.34
578 588 5.464069 TGCATTGATAGGTAGGAGGAGTTA 58.536 41.667 0.00 0.00 0.00 2.24
579 589 4.298626 TGCATTGATAGGTAGGAGGAGTT 58.701 43.478 0.00 0.00 0.00 3.01
580 590 3.928754 TGCATTGATAGGTAGGAGGAGT 58.071 45.455 0.00 0.00 0.00 3.85
581 591 4.963318 TTGCATTGATAGGTAGGAGGAG 57.037 45.455 0.00 0.00 0.00 3.69
582 592 4.907269 TCATTGCATTGATAGGTAGGAGGA 59.093 41.667 7.19 0.00 0.00 3.71
583 593 5.233083 TCATTGCATTGATAGGTAGGAGG 57.767 43.478 7.19 0.00 0.00 4.30
584 594 6.533012 CGTATCATTGCATTGATAGGTAGGAG 59.467 42.308 27.44 13.96 38.83 3.69
585 595 6.398095 CGTATCATTGCATTGATAGGTAGGA 58.602 40.000 27.44 11.32 38.83 2.94
586 596 6.653273 CGTATCATTGCATTGATAGGTAGG 57.347 41.667 27.44 15.18 38.83 3.18
590 600 5.106555 GGGAACGTATCATTGCATTGATAGG 60.107 44.000 30.75 30.75 44.35 2.57
591 601 5.469760 TGGGAACGTATCATTGCATTGATAG 59.530 40.000 24.60 20.41 38.83 2.08
592 602 5.372373 TGGGAACGTATCATTGCATTGATA 58.628 37.500 21.66 21.66 37.51 2.15
593 603 4.206375 TGGGAACGTATCATTGCATTGAT 58.794 39.130 23.42 23.42 39.60 2.57
594 604 3.615155 TGGGAACGTATCATTGCATTGA 58.385 40.909 13.30 13.30 0.00 2.57
595 605 3.243168 CCTGGGAACGTATCATTGCATTG 60.243 47.826 2.08 2.08 0.00 2.82
596 606 2.951642 CCTGGGAACGTATCATTGCATT 59.048 45.455 0.00 0.00 0.00 3.56
597 607 2.575532 CCTGGGAACGTATCATTGCAT 58.424 47.619 0.00 0.00 0.00 3.96
598 608 2.016604 GCCTGGGAACGTATCATTGCA 61.017 52.381 0.00 0.00 0.00 4.08
599 609 0.663153 GCCTGGGAACGTATCATTGC 59.337 55.000 0.00 0.00 0.00 3.56
600 610 2.036958 TGCCTGGGAACGTATCATTG 57.963 50.000 0.00 0.00 0.00 2.82
601 611 4.640771 ATATGCCTGGGAACGTATCATT 57.359 40.909 0.00 0.00 0.00 2.57
602 612 4.041567 TCAATATGCCTGGGAACGTATCAT 59.958 41.667 0.00 0.00 0.00 2.45
603 613 3.389656 TCAATATGCCTGGGAACGTATCA 59.610 43.478 0.00 0.00 0.00 2.15
604 614 4.002906 TCAATATGCCTGGGAACGTATC 57.997 45.455 0.00 0.00 0.00 2.24
605 615 4.389374 CTTCAATATGCCTGGGAACGTAT 58.611 43.478 0.00 0.00 0.00 3.06
606 616 3.433031 CCTTCAATATGCCTGGGAACGTA 60.433 47.826 0.00 0.00 0.00 3.57
607 617 2.643551 CTTCAATATGCCTGGGAACGT 58.356 47.619 0.00 0.00 0.00 3.99
608 618 1.949525 CCTTCAATATGCCTGGGAACG 59.050 52.381 0.00 0.00 0.00 3.95
609 619 3.297134 TCCTTCAATATGCCTGGGAAC 57.703 47.619 0.00 0.00 0.00 3.62
610 620 4.329638 TTTCCTTCAATATGCCTGGGAA 57.670 40.909 0.00 0.00 0.00 3.97
611 621 4.329638 TTTTCCTTCAATATGCCTGGGA 57.670 40.909 0.00 0.00 0.00 4.37
667 677 1.593933 TCGGTTGTGTTTAAGTCGTGC 59.406 47.619 0.00 0.00 0.00 5.34
668 678 3.117794 TCTCGGTTGTGTTTAAGTCGTG 58.882 45.455 0.00 0.00 0.00 4.35
672 682 7.311408 GTCTAGTATCTCGGTTGTGTTTAAGT 58.689 38.462 0.00 0.00 0.00 2.24
673 683 6.468319 CGTCTAGTATCTCGGTTGTGTTTAAG 59.532 42.308 0.00 0.00 0.00 1.85
674 684 6.317088 CGTCTAGTATCTCGGTTGTGTTTAA 58.683 40.000 0.00 0.00 0.00 1.52
675 685 5.163723 CCGTCTAGTATCTCGGTTGTGTTTA 60.164 44.000 0.00 0.00 38.45 2.01
676 686 4.380233 CCGTCTAGTATCTCGGTTGTGTTT 60.380 45.833 0.00 0.00 38.45 2.83
677 687 3.128242 CCGTCTAGTATCTCGGTTGTGTT 59.872 47.826 0.00 0.00 38.45 3.32
679 689 2.033049 CCCGTCTAGTATCTCGGTTGTG 59.967 54.545 0.00 0.00 41.17 3.33
681 691 1.001597 GCCCGTCTAGTATCTCGGTTG 60.002 57.143 0.00 0.00 41.17 3.77
690 700 1.147824 CTCTCGGGCCCGTCTAGTA 59.852 63.158 41.57 22.18 40.74 1.82
691 701 2.124236 CTCTCGGGCCCGTCTAGT 60.124 66.667 41.57 0.00 40.74 2.57
692 702 3.597728 GCTCTCGGGCCCGTCTAG 61.598 72.222 41.57 33.43 40.74 2.43
807 830 3.987954 GATTTTGGCGGAGGGCGGA 62.988 63.158 0.00 0.00 44.92 5.54
882 906 4.899239 CTGGATCTCCGCCGGTGC 62.899 72.222 10.27 0.00 39.43 5.01
883 907 4.227134 CCTGGATCTCCGCCGGTG 62.227 72.222 8.42 8.42 39.43 4.94
1043 1399 8.545229 AAGGAAGCAGAGATAAATCGATAATG 57.455 34.615 0.00 0.00 0.00 1.90
1055 1411 5.998363 AGTAAAAACGAAAGGAAGCAGAGAT 59.002 36.000 0.00 0.00 0.00 2.75
1068 1424 5.235616 CACCTAACAGAGCAGTAAAAACGAA 59.764 40.000 0.00 0.00 0.00 3.85
1089 1463 5.278463 AACTAATGCAGTTGTGATGAACACC 60.278 40.000 1.29 0.00 46.01 4.16
1190 1570 4.532126 TCCTCCAGATTCTAGCAAAGTTGA 59.468 41.667 0.00 0.00 0.00 3.18
1191 1571 4.836825 TCCTCCAGATTCTAGCAAAGTTG 58.163 43.478 0.00 0.00 0.00 3.16
1290 1672 7.011763 CACATGAATAAGCTAGTGTGCACTTAT 59.988 37.037 19.41 9.47 42.54 1.73
1291 1673 6.313658 CACATGAATAAGCTAGTGTGCACTTA 59.686 38.462 19.41 7.41 42.54 2.24
1294 1676 4.631377 TCACATGAATAAGCTAGTGTGCAC 59.369 41.667 10.75 10.75 37.46 4.57
1367 1752 7.151308 AGACACTTTCATAGTTCAAGACAGAG 58.849 38.462 0.00 0.00 33.85 3.35
1371 1756 9.646427 ATTCTAGACACTTTCATAGTTCAAGAC 57.354 33.333 0.00 0.00 33.85 3.01
1380 1765 8.749354 TGCAGACTAATTCTAGACACTTTCATA 58.251 33.333 0.00 0.00 31.12 2.15
1381 1766 7.615403 TGCAGACTAATTCTAGACACTTTCAT 58.385 34.615 0.00 0.00 31.12 2.57
1431 1817 5.072193 ACCTGATGGCATGTCATAACTGATA 59.928 40.000 13.92 0.00 36.63 2.15
1436 1825 4.989279 AAACCTGATGGCATGTCATAAC 57.011 40.909 13.92 2.07 36.63 1.89
1605 1999 0.394565 AGGATCATACAGAAGCCGGC 59.605 55.000 21.89 21.89 31.94 6.13
1606 2000 2.366916 AGAAGGATCATACAGAAGCCGG 59.633 50.000 0.00 0.00 31.94 6.13
1637 2031 1.154205 CGATCGGGTCAACTGCATCC 61.154 60.000 7.38 0.00 0.00 3.51
1642 2036 4.072913 CGTCGATCGGGTCAACTG 57.927 61.111 16.41 0.00 35.71 3.16
1660 2054 3.274095 AGCTAGGTGAAAATCAGGCTC 57.726 47.619 0.00 0.00 0.00 4.70
1751 2146 7.096436 CGTAAGATACACTTGATGCTGTATGAC 60.096 40.741 0.00 0.00 39.38 3.06
1768 2163 3.166657 GTGACACCGACACGTAAGATAC 58.833 50.000 0.00 0.00 43.62 2.24
1788 2183 4.518970 GGTGGTCATGTACAGAATTTGTGT 59.481 41.667 0.33 4.48 41.10 3.72
1789 2184 4.082787 GGGTGGTCATGTACAGAATTTGTG 60.083 45.833 0.33 0.00 41.10 3.33
1843 2238 1.008875 TGCAACGACATGAGAGCGAC 61.009 55.000 0.00 0.00 0.00 5.19
1909 2439 0.908198 GCTGGTGAGGACAGAGGAAT 59.092 55.000 0.00 0.00 38.20 3.01
1912 2442 1.190833 ACTGCTGGTGAGGACAGAGG 61.191 60.000 0.00 0.00 38.20 3.69
1947 2477 3.712091 GGAACACATCCCTACGACTAG 57.288 52.381 0.00 0.00 43.00 2.57
1971 2501 0.457337 CGTCTTTTCCCGGGTACTCG 60.457 60.000 22.86 8.57 0.00 4.18
1980 2510 4.909880 CGAGAAATTTCAACGTCTTTTCCC 59.090 41.667 19.99 0.00 0.00 3.97
2005 2535 1.351017 CCTCAACCAAGCCCTAGTGAA 59.649 52.381 0.00 0.00 0.00 3.18
2169 2699 5.127031 GGCATTCCTAAAAGGATGCTTAACA 59.873 40.000 20.07 0.00 45.34 2.41
2177 2707 8.551682 TGATTTTATGGCATTCCTAAAAGGAT 57.448 30.769 4.78 0.00 45.34 3.24
2210 2740 7.777910 TCATCTTGTCTAAAGGAAACAAAGGAA 59.222 33.333 0.00 0.00 32.89 3.36
2225 2755 3.006430 TCAGTTTGGCGTCATCTTGTCTA 59.994 43.478 0.00 0.00 0.00 2.59
2354 2893 1.065564 GCAGGTGGAGATCTTTCAGCT 60.066 52.381 19.42 19.42 39.45 4.24
2374 2913 6.602179 TCTGCAGAACAAAGATGAATAAACG 58.398 36.000 15.67 0.00 0.00 3.60
2712 3251 7.281999 GGAAGGGAAGAAGATTAATGAAGTGAG 59.718 40.741 0.00 0.00 0.00 3.51
2919 3460 4.938226 GCCTTAGTTGTCATCTTTGCTACT 59.062 41.667 0.00 0.00 0.00 2.57
2945 3487 5.358160 GGGGAATCAATCTCTTGGTGTAAAG 59.642 44.000 0.00 0.00 32.95 1.85
3104 3654 5.916320 CCATAATACGTATGTACTCAACGCA 59.084 40.000 9.24 3.68 40.18 5.24
3193 3829 8.922058 ATTCAGTCAATTCAAATAAGATGTGC 57.078 30.769 0.00 0.00 0.00 4.57
3330 3966 3.168035 TGCAACCCCACTAATGAACAT 57.832 42.857 0.00 0.00 0.00 2.71
3391 4031 2.490328 TGAAGAAGCGCAAAAACTGG 57.510 45.000 11.47 0.00 0.00 4.00
3455 4095 5.123502 CACAACTCTGGATGAGATCAAAAGG 59.876 44.000 0.00 0.00 45.39 3.11
3572 4212 1.897560 AAGCAGCTACAAACCTGTCC 58.102 50.000 0.00 0.00 36.96 4.02
4184 4954 7.450903 ACTAACCCTTTGGATAATTCCTATCG 58.549 38.462 0.00 0.00 43.07 2.92
4314 5084 6.313519 TCACCACTATGCCTAAAATCTCTT 57.686 37.500 0.00 0.00 0.00 2.85
4493 5263 1.568612 CGCAGTCAATGGTTCGCACT 61.569 55.000 0.00 0.00 0.00 4.40
4823 5601 6.877322 GGACCTACTGTGCATTTTACTCTAAA 59.123 38.462 0.00 0.00 34.99 1.85
4824 5602 6.212791 AGGACCTACTGTGCATTTTACTCTAA 59.787 38.462 0.00 0.00 37.86 2.10
4825 5603 5.720041 AGGACCTACTGTGCATTTTACTCTA 59.280 40.000 0.00 0.00 37.86 2.43
4866 5647 7.762588 TCATAGTATTAGGACTAGCTTGACC 57.237 40.000 8.47 8.47 35.42 4.02
4972 5754 1.069765 CAGTTGTCGACCTGCCACT 59.930 57.895 14.12 4.48 0.00 4.00
5003 5785 3.767902 TCCAGGGGATTTTTGCAAAAG 57.232 42.857 22.78 10.71 0.00 2.27
5011 5793 3.402708 AGAAGACCTTTCCAGGGGATTTT 59.597 43.478 0.00 0.00 46.01 1.82
5020 5802 7.660030 AAAATTCAAAGAGAAGACCTTTCCA 57.340 32.000 0.00 0.00 40.15 3.53
5063 5845 6.176896 CCAGAGAGAGGAATAGATGATACGA 58.823 44.000 0.00 0.00 0.00 3.43
5088 5870 1.893919 GACACAGGTGGAGAGGAGGC 61.894 65.000 4.24 0.00 34.19 4.70
5210 5994 1.068588 CGTGATCGATCCCCTTTGCTA 59.931 52.381 22.31 0.00 39.71 3.49
5280 6072 5.478407 CCTTGTTATTTCCCATTGGTCAAC 58.522 41.667 1.20 0.00 0.00 3.18
5444 6236 1.153168 CGAGCCGGACAAATCCCAT 60.153 57.895 5.05 0.00 42.83 4.00
5579 6373 1.470285 GCAGTCCTATCCGCGTTGTAA 60.470 52.381 4.92 0.00 0.00 2.41
5645 6445 6.824958 ACTATTTGAGGGATGCCTAGTTAA 57.175 37.500 5.42 0.00 0.00 2.01
5980 6789 3.681897 AGTTGAGACGTCAAATGAGATGC 59.318 43.478 19.50 0.00 44.44 3.91
6320 7140 0.656259 TCAACTCTATCGTCGCCTCG 59.344 55.000 0.00 0.00 0.00 4.63
6386 7206 0.376152 TCTTCGAGATCGCCGTGTAC 59.624 55.000 9.68 0.00 39.60 2.90
6398 7218 4.748892 TGAAGTCATAAAGGCTCTTCGAG 58.251 43.478 6.82 0.00 37.78 4.04
6453 7273 0.329596 GGATGTTTCCCAGCAGAGGT 59.670 55.000 0.00 0.00 35.84 3.85
6687 7512 5.242434 ACATAAAAGATCTAACACGTGGCA 58.758 37.500 21.57 5.81 0.00 4.92
6719 7547 5.912955 GCGGCATAAACATAGTTTACAATCC 59.087 40.000 4.64 3.87 0.00 3.01
6870 7701 7.039434 TGGTGGTTCATTATGCTTAAAACATCA 60.039 33.333 8.39 0.00 0.00 3.07
6954 7785 4.070009 TGATCATGCTTATGGATGCAGTC 58.930 43.478 5.36 4.78 42.74 3.51
6956 7787 5.048013 ACAATGATCATGCTTATGGATGCAG 60.048 40.000 9.46 0.00 42.74 4.41
6958 7789 5.386958 ACAATGATCATGCTTATGGATGC 57.613 39.130 9.46 0.00 41.06 3.91
7014 7845 9.474313 TTTGATTGCCCAAGTAGTAATCTTATT 57.526 29.630 0.00 0.00 37.28 1.40
7030 7861 1.748493 TGCCGTAGAATTTGATTGCCC 59.252 47.619 0.00 0.00 0.00 5.36
7117 7948 6.370994 CGACCTAACTGAGAGTAGAACTTGTA 59.629 42.308 0.00 0.00 0.00 2.41
7118 7949 5.181622 CGACCTAACTGAGAGTAGAACTTGT 59.818 44.000 0.00 0.00 0.00 3.16
7119 7950 5.411977 TCGACCTAACTGAGAGTAGAACTTG 59.588 44.000 0.00 0.00 0.00 3.16
7120 7951 5.558818 TCGACCTAACTGAGAGTAGAACTT 58.441 41.667 0.00 0.00 0.00 2.66
7121 7952 5.163281 TCGACCTAACTGAGAGTAGAACT 57.837 43.478 0.00 0.00 0.00 3.01
7122 7953 5.674318 GCTTCGACCTAACTGAGAGTAGAAC 60.674 48.000 0.00 0.00 0.00 3.01
7123 7954 4.395542 GCTTCGACCTAACTGAGAGTAGAA 59.604 45.833 0.00 0.00 0.00 2.10
7124 7955 3.940221 GCTTCGACCTAACTGAGAGTAGA 59.060 47.826 0.00 0.00 0.00 2.59
7125 7956 3.690139 TGCTTCGACCTAACTGAGAGTAG 59.310 47.826 0.00 0.00 0.00 2.57
7141 7972 5.352569 AGGTGTTCTCTTAATTGATGCTTCG 59.647 40.000 0.00 0.00 0.00 3.79
7218 8107 2.091541 CCCACATGTTGGTATGGTGAC 58.908 52.381 7.82 0.00 45.25 3.67
7228 8117 2.301346 GCTATTCTCCCCCACATGTTG 58.699 52.381 0.00 0.00 0.00 3.33
7584 8477 6.071463 GGCGATAACATAAATCGTTGTCATC 58.929 40.000 7.25 0.00 46.15 2.92
7592 8485 4.307432 AGGAGTGGCGATAACATAAATCG 58.693 43.478 1.29 1.29 46.94 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.