Multiple sequence alignment - TraesCS1A01G023800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G023800 chr1A 100.000 4223 0 0 1 4223 11661758 11665980 0.000000e+00 7799
1 TraesCS1A01G023800 chr1A 86.580 231 24 5 3771 3997 12136137 12135910 9.070000e-62 248
2 TraesCS1A01G023800 chr1A 90.659 182 10 7 3822 3997 12138555 12138375 7.060000e-58 235
3 TraesCS1A01G023800 chr1B 89.244 3412 251 59 859 4223 14844828 14848170 0.000000e+00 4161
4 TraesCS1A01G023800 chr1B 87.297 370 38 6 752 1115 14263811 14264177 8.450000e-112 414
5 TraesCS1A01G023800 chr1B 94.422 251 12 2 3973 4223 15424087 15423839 6.620000e-103 385
6 TraesCS1A01G023800 chr1B 79.723 577 36 26 37 576 14843796 14844328 4.040000e-90 342
7 TraesCS1A01G023800 chr1B 89.677 155 12 4 3805 3958 15424226 15424075 1.200000e-45 195
8 TraesCS1A01G023800 chr1B 89.256 121 11 2 3826 3945 15316183 15316064 2.630000e-32 150
9 TraesCS1A01G023800 chr1B 78.968 252 20 16 1013 1244 14513693 14513931 1.580000e-29 141
10 TraesCS1A01G023800 chr1D 92.566 1964 103 26 1789 3722 9873477 9875427 0.000000e+00 2778
11 TraesCS1A01G023800 chr1D 92.090 847 48 14 859 1690 9872568 9873410 0.000000e+00 1175
12 TraesCS1A01G023800 chr1D 88.920 713 47 14 3514 4223 9879473 9880156 0.000000e+00 850
13 TraesCS1A01G023800 chr1D 95.280 339 11 4 3382 3719 9877442 9877776 2.240000e-147 532
14 TraesCS1A01G023800 chr1D 87.852 461 44 7 3774 4223 9877864 9878323 8.040000e-147 531
15 TraesCS1A01G023800 chr1D 80.035 566 47 27 37 575 9871522 9872048 4.010000e-95 359
16 TraesCS1A01G023800 chr1D 93.478 184 11 1 3721 3904 9875509 9875691 5.380000e-69 272
17 TraesCS1A01G023800 chr2D 90.244 123 9 2 3793 3913 617637358 617637479 1.570000e-34 158


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G023800 chr1A 11661758 11665980 4222 False 7799.000000 7799 100.000000 1 4223 1 chr1A.!!$F1 4222
1 TraesCS1A01G023800 chr1A 12135910 12138555 2645 True 241.500000 248 88.619500 3771 3997 2 chr1A.!!$R1 226
2 TraesCS1A01G023800 chr1B 14843796 14848170 4374 False 2251.500000 4161 84.483500 37 4223 2 chr1B.!!$F3 4186
3 TraesCS1A01G023800 chr1D 9871522 9880156 8634 False 928.142857 2778 90.031571 37 4223 7 chr1D.!!$F1 4186

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
844 1155 0.108520 GTTGTGCATGCCAGGAATGG 60.109 55.0 16.68 0.00 0.00 3.16 F
1775 2102 0.179048 GTTTGCTGCAAAGGCCCTTT 60.179 50.0 26.63 1.93 40.13 3.11 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1944 2301 0.251297 TGTTCAACCAGGGATGGCAG 60.251 55.0 0.0 0.0 0.0 4.85 R
3276 3661 0.318784 ACAGTGTCGTCTCGCCTTTC 60.319 55.0 0.0 0.0 0.0 2.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.497107 CGATTGATTTGGTCCCATGC 57.503 50.000 0.00 0.00 0.00 4.06
20 21 1.268692 CGATTGATTTGGTCCCATGCG 60.269 52.381 0.00 0.00 0.00 4.73
21 22 2.023673 GATTGATTTGGTCCCATGCGA 58.976 47.619 0.00 0.00 0.00 5.10
22 23 2.142356 TTGATTTGGTCCCATGCGAT 57.858 45.000 0.00 0.00 0.00 4.58
23 24 3.289407 TTGATTTGGTCCCATGCGATA 57.711 42.857 0.00 0.00 0.00 2.92
24 25 2.571212 TGATTTGGTCCCATGCGATAC 58.429 47.619 0.00 0.00 0.00 2.24
25 26 2.092699 TGATTTGGTCCCATGCGATACA 60.093 45.455 0.00 0.00 0.00 2.29
26 27 2.498644 TTTGGTCCCATGCGATACAA 57.501 45.000 0.00 0.00 0.00 2.41
27 28 2.498644 TTGGTCCCATGCGATACAAA 57.501 45.000 0.00 0.00 0.00 2.83
28 29 2.498644 TGGTCCCATGCGATACAAAA 57.501 45.000 0.00 0.00 0.00 2.44
29 30 3.011566 TGGTCCCATGCGATACAAAAT 57.988 42.857 0.00 0.00 0.00 1.82
30 31 3.360867 TGGTCCCATGCGATACAAAATT 58.639 40.909 0.00 0.00 0.00 1.82
31 32 3.130164 TGGTCCCATGCGATACAAAATTG 59.870 43.478 0.00 0.00 0.00 2.32
32 33 3.380004 GGTCCCATGCGATACAAAATTGA 59.620 43.478 0.00 0.00 0.00 2.57
33 34 4.037923 GGTCCCATGCGATACAAAATTGAT 59.962 41.667 0.00 0.00 0.00 2.57
34 35 5.451798 GGTCCCATGCGATACAAAATTGATT 60.452 40.000 0.00 0.00 0.00 2.57
35 36 5.459762 GTCCCATGCGATACAAAATTGATTG 59.540 40.000 0.00 0.00 36.37 2.67
65 66 4.511454 TGATCGATCCATCATTTTCCGTTC 59.489 41.667 22.31 0.00 0.00 3.95
118 119 3.502875 GCTTCCTCCCCCATCCCC 61.503 72.222 0.00 0.00 0.00 4.81
119 120 2.778717 CTTCCTCCCCCATCCCCC 60.779 72.222 0.00 0.00 0.00 5.40
120 121 3.643081 TTCCTCCCCCATCCCCCA 61.643 66.667 0.00 0.00 0.00 4.96
121 122 2.959066 CTTCCTCCCCCATCCCCCAT 62.959 65.000 0.00 0.00 0.00 4.00
122 123 2.860971 CCTCCCCCATCCCCCATC 60.861 72.222 0.00 0.00 0.00 3.51
123 124 2.860971 CTCCCCCATCCCCCATCC 60.861 72.222 0.00 0.00 0.00 3.51
124 125 4.549741 TCCCCCATCCCCCATCCC 62.550 72.222 0.00 0.00 0.00 3.85
126 127 4.881381 CCCCATCCCCCATCCCCA 62.881 72.222 0.00 0.00 0.00 4.96
127 128 2.455122 CCCATCCCCCATCCCCAT 60.455 66.667 0.00 0.00 0.00 4.00
128 129 2.551413 CCCATCCCCCATCCCCATC 61.551 68.421 0.00 0.00 0.00 3.51
129 130 2.551413 CCATCCCCCATCCCCATCC 61.551 68.421 0.00 0.00 0.00 3.51
130 131 2.120854 ATCCCCCATCCCCATCCC 60.121 66.667 0.00 0.00 0.00 3.85
198 202 2.494918 GTCGACCCTGTGATCCGG 59.505 66.667 3.51 0.00 0.00 5.14
199 203 2.758327 TCGACCCTGTGATCCGGG 60.758 66.667 0.00 9.59 46.26 5.73
200 204 4.530857 CGACCCTGTGATCCGGGC 62.531 72.222 0.00 0.00 44.63 6.13
201 205 3.399181 GACCCTGTGATCCGGGCA 61.399 66.667 0.00 0.00 44.63 5.36
202 206 3.682292 GACCCTGTGATCCGGGCAC 62.682 68.421 17.92 17.92 44.63 5.01
203 207 3.402681 CCCTGTGATCCGGGCACT 61.403 66.667 22.83 0.00 38.41 4.40
204 208 2.124983 CCTGTGATCCGGGCACTG 60.125 66.667 22.83 21.55 37.18 3.66
205 209 2.665000 CTGTGATCCGGGCACTGT 59.335 61.111 22.83 0.00 37.18 3.55
206 210 1.448540 CTGTGATCCGGGCACTGTC 60.449 63.158 22.83 5.70 37.18 3.51
207 211 2.509336 GTGATCCGGGCACTGTCG 60.509 66.667 17.60 0.00 33.57 4.35
208 212 2.678580 TGATCCGGGCACTGTCGA 60.679 61.111 0.00 0.00 0.00 4.20
209 213 2.202756 GATCCGGGCACTGTCGAC 60.203 66.667 9.11 9.11 0.00 4.20
210 214 3.718210 GATCCGGGCACTGTCGACC 62.718 68.421 14.12 0.00 0.00 4.79
213 217 4.742201 CGGGCACTGTCGACCCTG 62.742 72.222 14.12 8.06 41.86 4.45
214 218 3.626924 GGGCACTGTCGACCCTGT 61.627 66.667 14.12 6.62 40.75 4.00
215 219 2.357517 GGCACTGTCGACCCTGTG 60.358 66.667 21.32 21.32 37.35 3.66
216 220 2.734591 GCACTGTCGACCCTGTGA 59.265 61.111 26.48 4.58 36.67 3.58
217 221 1.293498 GCACTGTCGACCCTGTGAT 59.707 57.895 26.48 0.88 36.67 3.06
218 222 0.737715 GCACTGTCGACCCTGTGATC 60.738 60.000 26.48 13.06 36.67 2.92
219 223 0.108615 CACTGTCGACCCTGTGATCC 60.109 60.000 21.16 0.00 36.67 3.36
220 224 1.139734 CTGTCGACCCTGTGATCCG 59.860 63.158 14.12 0.00 0.00 4.18
309 327 4.537433 GCCAGCCCGAATCGAGCT 62.537 66.667 5.68 5.68 37.32 4.09
437 456 2.583441 TTGAGCTCGTGGAGGTGGG 61.583 63.158 9.64 0.00 40.67 4.61
438 457 2.680352 GAGCTCGTGGAGGTGGGA 60.680 66.667 0.00 0.00 40.67 4.37
451 470 1.304962 GTGGGATTGGGGTTGGGAC 60.305 63.158 0.00 0.00 0.00 4.46
486 517 1.341383 GCAATCCCAACAGATCCAGGT 60.341 52.381 0.00 0.00 0.00 4.00
487 518 2.372264 CAATCCCAACAGATCCAGGTG 58.628 52.381 0.00 0.00 0.00 4.00
488 519 0.921896 ATCCCAACAGATCCAGGTGG 59.078 55.000 11.91 11.91 0.00 4.61
489 520 0.475632 TCCCAACAGATCCAGGTGGT 60.476 55.000 16.28 0.00 36.34 4.16
490 521 0.322816 CCCAACAGATCCAGGTGGTG 60.323 60.000 16.28 5.13 36.34 4.17
492 523 3.009436 CCAACAGATCCAGGTGGTGGT 62.009 57.143 10.89 0.00 45.19 4.16
499 530 2.452064 CCAGGTGGTGGTGGTGACT 61.452 63.158 0.00 0.00 42.17 3.41
500 531 1.071471 CAGGTGGTGGTGGTGACTC 59.929 63.158 0.00 0.00 0.00 3.36
501 532 2.030562 GGTGGTGGTGGTGACTCG 59.969 66.667 0.00 0.00 0.00 4.18
503 534 2.445085 TGGTGGTGGTGACTCGGT 60.445 61.111 0.00 0.00 0.00 4.69
517 561 1.078324 ACTCGGTCCCCTTCCTTCTTA 59.922 52.381 0.00 0.00 0.00 2.10
569 616 5.188751 CCTTCTTCTTCTCTGTTACTCCCAT 59.811 44.000 0.00 0.00 0.00 4.00
576 623 5.916661 TCTCTGTTACTCCCATACTTCAC 57.083 43.478 0.00 0.00 0.00 3.18
578 625 4.338012 TCTGTTACTCCCATACTTCACGA 58.662 43.478 0.00 0.00 0.00 4.35
583 630 3.965694 ACTCCCATACTTCACGAGTAGT 58.034 45.455 0.00 0.00 43.79 2.73
584 631 3.946558 ACTCCCATACTTCACGAGTAGTC 59.053 47.826 0.00 0.00 43.79 2.59
586 633 4.597004 TCCCATACTTCACGAGTAGTCTT 58.403 43.478 0.00 0.00 43.79 3.01
588 635 5.479375 TCCCATACTTCACGAGTAGTCTTTT 59.521 40.000 0.00 0.00 43.79 2.27
589 636 6.660521 TCCCATACTTCACGAGTAGTCTTTTA 59.339 38.462 0.00 0.00 43.79 1.52
598 677 6.071784 TCACGAGTAGTCTTTTATTGCTACCA 60.072 38.462 0.00 0.00 35.65 3.25
618 697 8.825745 GCTACCAAAAATTCAAAATTTGTCTCA 58.174 29.630 5.56 0.00 33.31 3.27
637 716 9.716531 TTGTCTCAGATATGTGAAATGATATCC 57.283 33.333 3.90 0.00 33.64 2.59
638 717 8.873144 TGTCTCAGATATGTGAAATGATATCCA 58.127 33.333 3.90 0.00 33.64 3.41
642 721 8.953313 TCAGATATGTGAAATGATATCCATTGC 58.047 33.333 0.00 0.26 44.28 3.56
643 722 8.188799 CAGATATGTGAAATGATATCCATTGCC 58.811 37.037 0.00 0.00 44.28 4.52
644 723 4.834357 TGTGAAATGATATCCATTGCCG 57.166 40.909 0.00 0.00 44.28 5.69
645 724 4.459330 TGTGAAATGATATCCATTGCCGA 58.541 39.130 0.00 0.00 44.28 5.54
646 725 4.516321 TGTGAAATGATATCCATTGCCGAG 59.484 41.667 0.00 0.00 44.28 4.63
648 727 4.756642 TGAAATGATATCCATTGCCGAGTC 59.243 41.667 0.00 0.00 44.28 3.36
649 728 4.630644 AATGATATCCATTGCCGAGTCT 57.369 40.909 0.00 0.00 43.46 3.24
650 729 5.745312 AATGATATCCATTGCCGAGTCTA 57.255 39.130 0.00 0.00 43.46 2.59
651 730 4.521130 TGATATCCATTGCCGAGTCTAC 57.479 45.455 0.00 0.00 0.00 2.59
652 731 3.895041 TGATATCCATTGCCGAGTCTACA 59.105 43.478 0.00 0.00 0.00 2.74
653 732 4.528206 TGATATCCATTGCCGAGTCTACAT 59.472 41.667 0.00 0.00 0.00 2.29
654 733 3.845781 ATCCATTGCCGAGTCTACATT 57.154 42.857 0.00 0.00 0.00 2.71
655 734 4.955811 ATCCATTGCCGAGTCTACATTA 57.044 40.909 0.00 0.00 0.00 1.90
656 735 4.322080 TCCATTGCCGAGTCTACATTAG 57.678 45.455 0.00 0.00 0.00 1.73
658 737 4.161565 TCCATTGCCGAGTCTACATTAGTT 59.838 41.667 0.00 0.00 0.00 2.24
660 739 5.692204 CCATTGCCGAGTCTACATTAGTTAG 59.308 44.000 0.00 0.00 0.00 2.34
661 740 6.461092 CCATTGCCGAGTCTACATTAGTTAGA 60.461 42.308 0.00 0.00 0.00 2.10
663 742 6.519679 TGCCGAGTCTACATTAGTTAGAAA 57.480 37.500 0.00 0.00 0.00 2.52
664 743 6.927416 TGCCGAGTCTACATTAGTTAGAAAA 58.073 36.000 0.00 0.00 0.00 2.29
665 744 7.033791 TGCCGAGTCTACATTAGTTAGAAAAG 58.966 38.462 0.00 0.00 0.00 2.27
666 745 7.094075 TGCCGAGTCTACATTAGTTAGAAAAGA 60.094 37.037 0.00 0.00 0.00 2.52
668 747 9.074443 CCGAGTCTACATTAGTTAGAAAAGAAC 57.926 37.037 0.00 0.00 0.00 3.01
669 748 9.622004 CGAGTCTACATTAGTTAGAAAAGAACA 57.378 33.333 0.00 0.00 0.00 3.18
672 751 9.974750 GTCTACATTAGTTAGAAAAGAACATGC 57.025 33.333 0.00 0.00 0.00 4.06
673 752 9.162764 TCTACATTAGTTAGAAAAGAACATGCC 57.837 33.333 0.00 0.00 0.00 4.40
674 753 7.759489 ACATTAGTTAGAAAAGAACATGCCA 57.241 32.000 0.00 0.00 0.00 4.92
676 755 8.806146 ACATTAGTTAGAAAAGAACATGCCAAT 58.194 29.630 0.00 0.00 0.00 3.16
677 756 9.294030 CATTAGTTAGAAAAGAACATGCCAATC 57.706 33.333 0.00 0.00 0.00 2.67
678 757 8.635765 TTAGTTAGAAAAGAACATGCCAATCT 57.364 30.769 0.00 0.00 0.00 2.40
679 758 7.530426 AGTTAGAAAAGAACATGCCAATCTT 57.470 32.000 0.00 0.00 35.00 2.40
680 759 7.373493 AGTTAGAAAAGAACATGCCAATCTTG 58.627 34.615 0.00 0.00 33.86 3.02
681 760 5.796424 AGAAAAGAACATGCCAATCTTGT 57.204 34.783 0.00 0.00 33.86 3.16
682 761 6.165700 AGAAAAGAACATGCCAATCTTGTT 57.834 33.333 0.00 0.00 43.23 2.83
683 762 6.585416 AGAAAAGAACATGCCAATCTTGTTT 58.415 32.000 0.00 0.00 41.40 2.83
686 765 2.460757 ACATGCCAATCTTGTTTGCC 57.539 45.000 0.00 0.00 29.82 4.52
687 766 1.337074 ACATGCCAATCTTGTTTGCCG 60.337 47.619 0.00 0.00 29.82 5.69
688 767 1.067706 CATGCCAATCTTGTTTGCCGA 60.068 47.619 0.00 0.00 0.00 5.54
689 768 0.597568 TGCCAATCTTGTTTGCCGAG 59.402 50.000 0.00 0.00 0.00 4.63
690 769 0.881118 GCCAATCTTGTTTGCCGAGA 59.119 50.000 0.00 0.00 37.99 4.04
691 770 1.135575 GCCAATCTTGTTTGCCGAGAG 60.136 52.381 0.00 0.00 37.01 3.20
692 771 2.426522 CCAATCTTGTTTGCCGAGAGA 58.573 47.619 0.00 0.00 37.01 3.10
693 772 2.417933 CCAATCTTGTTTGCCGAGAGAG 59.582 50.000 0.00 0.00 37.01 3.20
694 773 1.731720 ATCTTGTTTGCCGAGAGAGC 58.268 50.000 0.00 0.00 37.01 4.09
696 775 0.321122 CTTGTTTGCCGAGAGAGCCT 60.321 55.000 0.00 0.00 0.00 4.58
697 776 0.603707 TTGTTTGCCGAGAGAGCCTG 60.604 55.000 0.00 0.00 0.00 4.85
698 777 2.046892 TTTGCCGAGAGAGCCTGC 60.047 61.111 0.00 0.00 0.00 4.85
699 778 2.587247 TTTGCCGAGAGAGCCTGCT 61.587 57.895 0.00 0.00 0.00 4.24
701 780 3.456365 GCCGAGAGAGCCTGCTGA 61.456 66.667 0.00 0.00 0.00 4.26
702 781 3.011635 GCCGAGAGAGCCTGCTGAA 62.012 63.158 0.00 0.00 0.00 3.02
703 782 1.821936 CCGAGAGAGCCTGCTGAAT 59.178 57.895 0.00 0.00 0.00 2.57
704 783 0.249405 CCGAGAGAGCCTGCTGAATC 60.249 60.000 0.00 0.00 0.00 2.52
705 784 0.459078 CGAGAGAGCCTGCTGAATCA 59.541 55.000 0.00 0.00 0.00 2.57
706 785 1.134877 CGAGAGAGCCTGCTGAATCAA 60.135 52.381 0.00 0.00 0.00 2.57
708 916 3.243670 CGAGAGAGCCTGCTGAATCAATA 60.244 47.826 0.00 0.00 0.00 1.90
710 918 5.108187 AGAGAGCCTGCTGAATCAATAAA 57.892 39.130 0.00 0.00 0.00 1.40
713 921 6.606395 AGAGAGCCTGCTGAATCAATAAAAAT 59.394 34.615 0.00 0.00 0.00 1.82
716 924 6.570692 AGCCTGCTGAATCAATAAAAATGAG 58.429 36.000 0.00 0.00 0.00 2.90
718 926 6.255020 GCCTGCTGAATCAATAAAAATGAGTG 59.745 38.462 0.00 0.00 0.00 3.51
719 927 6.255020 CCTGCTGAATCAATAAAAATGAGTGC 59.745 38.462 0.00 0.00 0.00 4.40
728 936 7.771183 TCAATAAAAATGAGTGCCAATACTCC 58.229 34.615 0.00 0.00 45.07 3.85
730 938 7.961326 ATAAAAATGAGTGCCAATACTCCTT 57.039 32.000 0.00 0.00 45.07 3.36
732 940 7.775053 AAAAATGAGTGCCAATACTCCTTAA 57.225 32.000 0.00 0.00 45.07 1.85
734 942 7.573968 AAATGAGTGCCAATACTCCTTAATC 57.426 36.000 0.00 0.00 45.07 1.75
740 948 6.375455 AGTGCCAATACTCCTTAATCACTTTG 59.625 38.462 0.00 0.00 0.00 2.77
742 950 5.885912 GCCAATACTCCTTAATCACTTTGGA 59.114 40.000 0.00 0.00 34.40 3.53
744 952 7.415653 GCCAATACTCCTTAATCACTTTGGAAG 60.416 40.741 0.00 0.00 34.40 3.46
745 953 7.829211 CCAATACTCCTTAATCACTTTGGAAGA 59.171 37.037 0.00 0.00 34.40 2.87
746 954 8.669243 CAATACTCCTTAATCACTTTGGAAGAC 58.331 37.037 0.00 0.00 0.00 3.01
747 955 6.187727 ACTCCTTAATCACTTTGGAAGACA 57.812 37.500 0.00 0.00 0.00 3.41
748 956 6.784031 ACTCCTTAATCACTTTGGAAGACAT 58.216 36.000 0.00 0.00 0.00 3.06
754 1055 6.428385 AATCACTTTGGAAGACATCGAATC 57.572 37.500 0.00 0.00 0.00 2.52
756 1057 2.673368 ACTTTGGAAGACATCGAATCGC 59.327 45.455 0.00 0.00 0.00 4.58
760 1061 4.053469 TGGAAGACATCGAATCGCATAA 57.947 40.909 0.00 0.00 0.00 1.90
761 1062 3.802139 TGGAAGACATCGAATCGCATAAC 59.198 43.478 0.00 0.00 0.00 1.89
776 1077 4.338118 TCGCATAACTTTGGATGGGATTTC 59.662 41.667 0.00 0.00 39.34 2.17
778 1079 5.163519 CGCATAACTTTGGATGGGATTTCTT 60.164 40.000 0.00 0.00 38.03 2.52
779 1080 6.627953 CGCATAACTTTGGATGGGATTTCTTT 60.628 38.462 0.00 0.00 38.03 2.52
780 1081 7.416213 CGCATAACTTTGGATGGGATTTCTTTA 60.416 37.037 0.00 0.00 38.03 1.85
796 1107 7.753580 GGATTTCTTTACTGTTTACATTTCCGG 59.246 37.037 0.00 0.00 0.00 5.14
797 1108 7.804843 TTTCTTTACTGTTTACATTTCCGGA 57.195 32.000 0.00 0.00 0.00 5.14
800 1111 6.373216 TCTTTACTGTTTACATTTCCGGATGG 59.627 38.462 4.15 0.00 0.00 3.51
817 1128 4.157656 CGGATGGCTTTTCTACATTTTGGA 59.842 41.667 0.00 0.00 0.00 3.53
819 1130 6.627953 CGGATGGCTTTTCTACATTTTGGATT 60.628 38.462 0.00 0.00 0.00 3.01
823 1134 7.678837 TGGCTTTTCTACATTTTGGATTTGAT 58.321 30.769 0.00 0.00 0.00 2.57
824 1135 8.156165 TGGCTTTTCTACATTTTGGATTTGATT 58.844 29.630 0.00 0.00 0.00 2.57
826 1137 8.992073 GCTTTTCTACATTTTGGATTTGATTGT 58.008 29.630 0.00 0.00 0.00 2.71
829 1140 9.829507 TTTCTACATTTTGGATTTGATTGTTGT 57.170 25.926 0.00 0.00 0.00 3.32
830 1141 8.815141 TCTACATTTTGGATTTGATTGTTGTG 57.185 30.769 0.00 0.00 0.00 3.33
832 1143 5.821470 ACATTTTGGATTTGATTGTTGTGCA 59.179 32.000 0.00 0.00 0.00 4.57
833 1144 6.487331 ACATTTTGGATTTGATTGTTGTGCAT 59.513 30.769 0.00 0.00 0.00 3.96
834 1145 5.926214 TTTGGATTTGATTGTTGTGCATG 57.074 34.783 0.00 0.00 0.00 4.06
835 1146 3.327626 TGGATTTGATTGTTGTGCATGC 58.672 40.909 11.82 11.82 0.00 4.06
836 1147 2.674357 GGATTTGATTGTTGTGCATGCC 59.326 45.455 16.68 7.25 0.00 4.40
837 1148 2.904697 TTTGATTGTTGTGCATGCCA 57.095 40.000 16.68 10.08 0.00 4.92
838 1149 2.442212 TTGATTGTTGTGCATGCCAG 57.558 45.000 16.68 0.00 0.00 4.85
839 1150 0.604073 TGATTGTTGTGCATGCCAGG 59.396 50.000 16.68 0.00 0.00 4.45
840 1151 0.889994 GATTGTTGTGCATGCCAGGA 59.110 50.000 16.68 0.00 0.00 3.86
841 1152 1.273048 GATTGTTGTGCATGCCAGGAA 59.727 47.619 16.68 9.26 0.00 3.36
842 1153 1.340088 TTGTTGTGCATGCCAGGAAT 58.660 45.000 16.68 0.00 0.00 3.01
843 1154 0.604073 TGTTGTGCATGCCAGGAATG 59.396 50.000 16.68 2.36 0.00 2.67
844 1155 0.108520 GTTGTGCATGCCAGGAATGG 60.109 55.000 16.68 0.00 0.00 3.16
851 1162 4.954933 GCCAGGAATGGCGACTAA 57.045 55.556 3.09 0.00 45.79 2.24
852 1163 2.695314 GCCAGGAATGGCGACTAAG 58.305 57.895 3.09 0.00 45.79 2.18
853 1164 0.815615 GCCAGGAATGGCGACTAAGG 60.816 60.000 3.09 0.00 45.79 2.69
854 1165 0.830648 CCAGGAATGGCGACTAAGGA 59.169 55.000 0.00 0.00 0.00 3.36
855 1166 1.209504 CCAGGAATGGCGACTAAGGAA 59.790 52.381 0.00 0.00 0.00 3.36
856 1167 2.280628 CAGGAATGGCGACTAAGGAAC 58.719 52.381 0.00 0.00 0.00 3.62
857 1168 1.906574 AGGAATGGCGACTAAGGAACA 59.093 47.619 0.00 0.00 0.00 3.18
863 1174 2.103432 TGGCGACTAAGGAACAAACTCA 59.897 45.455 0.00 0.00 0.00 3.41
874 1185 6.109156 AGGAACAAACTCAGGTTTTGTTTT 57.891 33.333 12.95 4.49 42.96 2.43
875 1186 6.530120 AGGAACAAACTCAGGTTTTGTTTTT 58.470 32.000 12.95 4.21 42.96 1.94
895 1206 0.893270 TGGAATTGTTGCAGGGGTCG 60.893 55.000 0.00 0.00 0.00 4.79
898 1212 1.234615 AATTGTTGCAGGGGTCGACG 61.235 55.000 9.92 0.00 0.00 5.12
899 1213 2.107041 ATTGTTGCAGGGGTCGACGA 62.107 55.000 9.92 0.00 0.00 4.20
910 1224 3.058160 TCGACGACGAGGGGAACC 61.058 66.667 5.75 0.00 46.73 3.62
927 1241 3.006859 GGAACCAATACAAAAAGCAGGCT 59.993 43.478 0.00 0.00 0.00 4.58
928 1242 4.503123 GGAACCAATACAAAAAGCAGGCTT 60.503 41.667 0.00 0.00 37.98 4.35
929 1243 4.257267 ACCAATACAAAAAGCAGGCTTC 57.743 40.909 7.03 0.00 34.84 3.86
936 1260 3.118298 ACAAAAAGCAGGCTTCATTTGGT 60.118 39.130 24.04 11.52 37.74 3.67
948 1272 5.827797 GGCTTCATTTGGTGGTAGATTGATA 59.172 40.000 0.00 0.00 0.00 2.15
951 1275 7.864379 GCTTCATTTGGTGGTAGATTGATATTG 59.136 37.037 0.00 0.00 0.00 1.90
953 1277 9.645128 TTCATTTGGTGGTAGATTGATATTGAT 57.355 29.630 0.00 0.00 0.00 2.57
961 1285 9.884465 GTGGTAGATTGATATTGATAAAGTTGC 57.116 33.333 0.00 0.00 0.00 4.17
979 1303 7.709269 AAGTTGCATATATAGTTGTACCACG 57.291 36.000 0.00 0.00 0.00 4.94
981 1305 7.270047 AGTTGCATATATAGTTGTACCACGTT 58.730 34.615 0.00 0.00 0.00 3.99
989 1313 4.248691 AGTTGTACCACGTTAGACTTCC 57.751 45.455 0.00 0.00 0.00 3.46
1029 1353 1.000896 CCAACCCAGGGATGTGTCC 60.001 63.158 14.54 0.00 44.29 4.02
1115 1439 1.672356 CCACCAGCCACACTAGCAC 60.672 63.158 0.00 0.00 0.00 4.40
1209 1533 1.135689 GGCAATGTGGACGATGTCAAC 60.136 52.381 0.00 0.00 37.04 3.18
1566 1890 5.751990 CGACCATGTAAGTACATACCTTTCC 59.248 44.000 5.84 0.00 44.57 3.13
1567 1891 5.667466 ACCATGTAAGTACATACCTTTCCG 58.333 41.667 5.84 0.00 44.57 4.30
1569 1893 4.804868 TGTAAGTACATACCTTTCCGCA 57.195 40.909 5.84 0.00 0.00 5.69
1573 1897 4.332428 AGTACATACCTTTCCGCATACC 57.668 45.455 0.00 0.00 0.00 2.73
1578 1902 0.541863 ACCTTTCCGCATACCAGGAG 59.458 55.000 0.00 0.00 37.88 3.69
1584 1908 1.064758 TCCGCATACCAGGAGCAAATT 60.065 47.619 0.00 0.00 31.95 1.82
1585 1909 2.171659 TCCGCATACCAGGAGCAAATTA 59.828 45.455 0.00 0.00 31.95 1.40
1595 1919 7.195374 ACCAGGAGCAAATTAAGAGTACATA 57.805 36.000 0.00 0.00 0.00 2.29
1596 1920 7.048512 ACCAGGAGCAAATTAAGAGTACATAC 58.951 38.462 0.00 0.00 0.00 2.39
1628 1952 7.661536 TCTAGAGAATAAGTGTATGCCTTGT 57.338 36.000 0.00 0.00 0.00 3.16
1630 1954 8.540388 TCTAGAGAATAAGTGTATGCCTTGTTT 58.460 33.333 0.00 0.00 0.00 2.83
1673 1997 1.282738 TGGAAGCAAGCATCAGATGGA 59.717 47.619 12.54 0.00 0.00 3.41
1721 2045 4.646040 TCATATGCTTCATTGGTTTGAGGG 59.354 41.667 0.00 0.00 0.00 4.30
1727 2051 4.620982 CTTCATTGGTTTGAGGGTGTTTC 58.379 43.478 0.00 0.00 0.00 2.78
1740 2064 2.352127 GGGTGTTTCAAGCAGCATTCTC 60.352 50.000 5.76 0.00 36.21 2.87
1754 2081 5.762218 GCAGCATTCTCCTATTCATACTTGT 59.238 40.000 0.00 0.00 0.00 3.16
1755 2082 6.073331 GCAGCATTCTCCTATTCATACTTGTC 60.073 42.308 0.00 0.00 0.00 3.18
1767 2094 3.313803 TCATACTTGTCGTTTGCTGCAAA 59.686 39.130 22.84 22.84 0.00 3.68
1768 2095 2.193306 ACTTGTCGTTTGCTGCAAAG 57.807 45.000 26.63 19.48 33.82 2.77
1775 2102 0.179048 GTTTGCTGCAAAGGCCCTTT 60.179 50.000 26.63 1.93 40.13 3.11
1857 2213 4.558226 TGTTGTCCTCACTTATCAGCAT 57.442 40.909 0.00 0.00 0.00 3.79
1862 2218 8.432013 TGTTGTCCTCACTTATCAGCATATATT 58.568 33.333 0.00 0.00 0.00 1.28
1906 2263 6.573664 TGGTGAATCTGTGAAGTAAAATGG 57.426 37.500 0.00 0.00 0.00 3.16
1944 2301 3.787001 CTCCCTCGCACCTTCCCC 61.787 72.222 0.00 0.00 0.00 4.81
2022 2379 3.104512 TGGGTACTCATTCCGTGATTCT 58.895 45.455 0.00 0.00 35.97 2.40
2049 2406 0.955919 GATATTGCCAGGTAGCCGCC 60.956 60.000 0.00 0.00 0.00 6.13
2069 2426 1.608590 CGTGCCAGGTTCTTGTTCATT 59.391 47.619 0.00 0.00 0.00 2.57
2072 2429 4.546570 GTGCCAGGTTCTTGTTCATTAAC 58.453 43.478 0.00 0.00 36.07 2.01
2081 2438 9.965824 AGGTTCTTGTTCATTAACTGTAATTTG 57.034 29.630 0.00 0.00 36.51 2.32
2105 2462 4.402793 TCTCACATAGAACCTCCTAACAGC 59.597 45.833 0.00 0.00 0.00 4.40
2131 2488 8.612619 CATGTACTACAGGGTTTGAATTATGTC 58.387 37.037 0.00 0.00 0.00 3.06
2141 2498 0.233332 GAATTATGTCGCCGCTCTGC 59.767 55.000 0.00 0.00 0.00 4.26
2281 2638 5.852827 AGAGTATTCAAAGATCTGCTAGCC 58.147 41.667 13.29 0.00 0.00 3.93
2491 2849 0.896226 GCCTTCGGAGGTTAGACAGT 59.104 55.000 12.53 0.00 45.44 3.55
2501 2859 7.168219 TCGGAGGTTAGACAGTAGTTTACTTA 58.832 38.462 0.00 0.00 36.76 2.24
2502 2860 7.831193 TCGGAGGTTAGACAGTAGTTTACTTAT 59.169 37.037 0.00 0.00 36.76 1.73
2503 2861 8.465201 CGGAGGTTAGACAGTAGTTTACTTATT 58.535 37.037 0.00 0.00 36.76 1.40
2504 2862 9.583765 GGAGGTTAGACAGTAGTTTACTTATTG 57.416 37.037 0.00 0.00 36.76 1.90
2505 2863 8.999220 AGGTTAGACAGTAGTTTACTTATTGC 57.001 34.615 0.00 0.00 36.76 3.56
2506 2864 8.813951 AGGTTAGACAGTAGTTTACTTATTGCT 58.186 33.333 0.00 0.00 36.76 3.91
2507 2865 9.433153 GGTTAGACAGTAGTTTACTTATTGCTT 57.567 33.333 0.00 0.00 36.76 3.91
2512 2870 8.543862 ACAGTAGTTTACTTATTGCTTGGTAC 57.456 34.615 0.00 0.00 36.76 3.34
2525 2883 5.748670 TGCTTGGTACCAGTGTTTATCTA 57.251 39.130 15.65 0.00 0.00 1.98
2526 2884 5.730550 TGCTTGGTACCAGTGTTTATCTAG 58.269 41.667 15.65 6.62 0.00 2.43
2527 2885 4.571176 GCTTGGTACCAGTGTTTATCTAGC 59.429 45.833 15.65 12.99 0.00 3.42
2529 2887 4.359105 TGGTACCAGTGTTTATCTAGCCT 58.641 43.478 11.60 0.00 0.00 4.58
2543 2901 7.792374 TTATCTAGCCTGTCAATGATTTGTC 57.208 36.000 0.00 0.00 34.32 3.18
2551 2909 5.242393 CCTGTCAATGATTTGTCCAGAACTT 59.758 40.000 0.00 0.00 36.17 2.66
2560 2918 8.378172 TGATTTGTCCAGAACTTACTGTAAAG 57.622 34.615 1.46 0.00 36.30 1.85
2571 2929 6.952773 ACTTACTGTAAAGCCATTTCACAA 57.047 33.333 1.46 0.00 0.00 3.33
2683 3041 9.633581 GCTCTAGCAATTTTCAAGGTGTGTACC 62.634 44.444 0.00 0.00 43.43 3.34
2750 3108 4.479619 CTTCTGCTTGTTTGGCATTACTC 58.520 43.478 0.00 0.00 39.07 2.59
2751 3109 2.819608 TCTGCTTGTTTGGCATTACTCC 59.180 45.455 0.00 0.00 39.07 3.85
2752 3110 2.557924 CTGCTTGTTTGGCATTACTCCA 59.442 45.455 0.00 0.00 39.07 3.86
2900 3258 2.864343 ACTGCTCACGGTAAATATTCGC 59.136 45.455 0.00 0.00 31.99 4.70
2922 3280 4.855340 CCCTTTTGTACCCACAGATACAT 58.145 43.478 0.00 0.00 35.67 2.29
2957 3316 5.049198 AGGATGATGCACAATGTTATAAGCG 60.049 40.000 0.00 0.00 0.00 4.68
2961 3320 5.815222 TGATGCACAATGTTATAAGCGTACT 59.185 36.000 0.00 0.00 0.00 2.73
2962 3321 5.463499 TGCACAATGTTATAAGCGTACTG 57.537 39.130 0.00 0.00 0.00 2.74
2991 3350 7.708998 TGGAACACCAAGAAATTACAGTAAAC 58.291 34.615 0.00 0.00 0.00 2.01
3015 3374 0.611714 AGTCGCCCGTAATTTGGAGT 59.388 50.000 0.00 0.00 0.00 3.85
3016 3375 1.826720 AGTCGCCCGTAATTTGGAGTA 59.173 47.619 0.00 0.00 0.00 2.59
3017 3376 2.159142 AGTCGCCCGTAATTTGGAGTAG 60.159 50.000 0.00 0.00 0.00 2.57
3029 3413 4.503741 TTTGGAGTAGTTTGCATGCTTC 57.496 40.909 20.33 9.08 0.00 3.86
3068 3452 6.425210 CAATATTGGAGTCTGACCTATCCA 57.575 41.667 11.89 11.89 40.04 3.41
3077 3461 4.099573 AGTCTGACCTATCCATGTTTACCG 59.900 45.833 3.76 0.00 0.00 4.02
3135 3519 1.125270 TGACAACGAACACGATCACG 58.875 50.000 0.00 0.00 45.75 4.35
3276 3661 1.402787 AGCCCTGTGTGTTTTGAAGG 58.597 50.000 0.00 0.00 0.00 3.46
3292 3677 0.319641 AAGGAAAGGCGAGACGACAC 60.320 55.000 0.00 0.00 37.34 3.67
3293 3678 1.179814 AGGAAAGGCGAGACGACACT 61.180 55.000 0.00 0.00 37.34 3.55
3582 3969 7.592938 TGTATGTGTGAAATGGAGCTAAAAAG 58.407 34.615 0.00 0.00 0.00 2.27
3590 3977 8.919661 GTGAAATGGAGCTAAAAAGATTTCTTG 58.080 33.333 0.00 0.00 36.12 3.02
3623 4011 4.006319 AGTAACTTGATCTTGCTTCTGGC 58.994 43.478 0.00 0.00 42.22 4.85
3713 4101 6.839124 TTCTCAGTGTTTATGGCATTTGAT 57.161 33.333 4.78 0.00 0.00 2.57
3734 4205 5.702670 TGATTTGACCTAGAAAACTGAGCTG 59.297 40.000 0.00 0.00 0.00 4.24
3735 4206 4.689612 TTGACCTAGAAAACTGAGCTGT 57.310 40.909 0.00 0.00 0.00 4.40
3787 4258 9.589111 AGTGTTCGTTTATTTTTGGTGTTAATT 57.411 25.926 0.00 0.00 0.00 1.40
3804 4275 8.127954 GGTGTTAATTACCAAACGTTCAAGTAA 58.872 33.333 15.69 15.69 38.12 2.24
3806 4277 7.856894 TGTTAATTACCAAACGTTCAAGTAAGC 59.143 33.333 17.35 10.97 0.00 3.09
3809 4280 6.529463 TTACCAAACGTTCAAGTAAGCTAC 57.471 37.500 0.00 0.00 0.00 3.58
3820 4291 4.455533 TCAAGTAAGCTACCATTGCAAGTG 59.544 41.667 4.94 3.68 0.00 3.16
3824 4295 5.643777 AGTAAGCTACCATTGCAAGTGTAAG 59.356 40.000 4.94 0.00 0.00 2.34
3904 6679 3.007398 GGATCGAAACCTGGCTCTGATAT 59.993 47.826 0.00 0.00 0.00 1.63
3940 6717 1.519408 TTTTTACTGTCGGCCTCAGC 58.481 50.000 19.97 1.07 36.50 4.26
3953 6730 2.228343 GGCCTCAGCTCAATATGATTGC 59.772 50.000 0.00 0.00 39.73 3.56
3981 6762 3.297134 TTTCCAGGGAGTATGATTGGC 57.703 47.619 0.00 0.00 0.00 4.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.268692 CGCATGGGACCAAATCAATCG 60.269 52.381 3.11 0.00 0.00 3.34
1 2 2.023673 TCGCATGGGACCAAATCAATC 58.976 47.619 8.63 0.00 0.00 2.67
3 4 2.142356 ATCGCATGGGACCAAATCAA 57.858 45.000 15.49 0.00 0.00 2.57
4 5 2.092699 TGTATCGCATGGGACCAAATCA 60.093 45.455 15.49 5.62 0.00 2.57
5 6 2.571212 TGTATCGCATGGGACCAAATC 58.429 47.619 15.49 3.23 0.00 2.17
6 7 2.727123 TGTATCGCATGGGACCAAAT 57.273 45.000 15.49 1.11 0.00 2.32
7 8 2.498644 TTGTATCGCATGGGACCAAA 57.501 45.000 15.49 6.67 0.00 3.28
8 9 2.498644 TTTGTATCGCATGGGACCAA 57.501 45.000 15.49 16.77 0.00 3.67
9 10 2.498644 TTTTGTATCGCATGGGACCA 57.501 45.000 15.49 11.80 0.00 4.02
10 11 3.380004 TCAATTTTGTATCGCATGGGACC 59.620 43.478 15.49 9.27 0.00 4.46
11 12 4.630894 TCAATTTTGTATCGCATGGGAC 57.369 40.909 15.49 4.61 0.00 4.46
12 13 5.359292 TCAATCAATTTTGTATCGCATGGGA 59.641 36.000 15.52 15.52 0.00 4.37
13 14 5.590145 TCAATCAATTTTGTATCGCATGGG 58.410 37.500 2.76 2.76 0.00 4.00
14 15 7.435784 TCAATCAATCAATTTTGTATCGCATGG 59.564 33.333 0.00 0.00 0.00 3.66
15 16 8.342725 TCAATCAATCAATTTTGTATCGCATG 57.657 30.769 0.00 0.00 0.00 4.06
16 17 9.537192 AATCAATCAATCAATTTTGTATCGCAT 57.463 25.926 0.00 0.00 0.00 4.73
17 18 8.809478 CAATCAATCAATCAATTTTGTATCGCA 58.191 29.630 0.00 0.00 0.00 5.10
18 19 9.022915 TCAATCAATCAATCAATTTTGTATCGC 57.977 29.630 0.00 0.00 0.00 4.58
23 24 9.811995 ATCGATCAATCAATCAATCAATTTTGT 57.188 25.926 0.00 0.00 0.00 2.83
25 26 9.472361 GGATCGATCAATCAATCAATCAATTTT 57.528 29.630 25.93 0.00 0.00 1.82
26 27 8.635328 TGGATCGATCAATCAATCAATCAATTT 58.365 29.630 25.93 0.00 0.00 1.82
27 28 8.173542 TGGATCGATCAATCAATCAATCAATT 57.826 30.769 25.93 0.00 0.00 2.32
28 29 7.754851 TGGATCGATCAATCAATCAATCAAT 57.245 32.000 25.93 0.00 0.00 2.57
29 30 7.446013 TGATGGATCGATCAATCAATCAATCAA 59.554 33.333 33.67 14.22 42.66 2.57
30 31 6.938030 TGATGGATCGATCAATCAATCAATCA 59.062 34.615 33.67 16.28 42.66 2.57
31 32 7.373778 TGATGGATCGATCAATCAATCAATC 57.626 36.000 33.67 14.13 42.66 2.67
65 66 4.844349 TTGGTCAGAGGATTAAAGGAGG 57.156 45.455 0.00 0.00 0.00 4.30
118 119 1.462035 GGTGATGGGATGGGGATGG 59.538 63.158 0.00 0.00 0.00 3.51
119 120 1.073722 CGGTGATGGGATGGGGATG 59.926 63.158 0.00 0.00 0.00 3.51
120 121 2.833913 GCGGTGATGGGATGGGGAT 61.834 63.158 0.00 0.00 0.00 3.85
121 122 3.488569 GCGGTGATGGGATGGGGA 61.489 66.667 0.00 0.00 0.00 4.81
122 123 2.645394 ATTGCGGTGATGGGATGGGG 62.645 60.000 0.00 0.00 0.00 4.96
123 124 1.152694 ATTGCGGTGATGGGATGGG 60.153 57.895 0.00 0.00 0.00 4.00
124 125 2.035421 CATTGCGGTGATGGGATGG 58.965 57.895 0.00 0.00 0.00 3.51
125 126 1.361271 GCATTGCGGTGATGGGATG 59.639 57.895 0.00 0.00 0.00 3.51
126 127 1.829533 GGCATTGCGGTGATGGGAT 60.830 57.895 1.91 0.00 0.00 3.85
127 128 2.440065 GGCATTGCGGTGATGGGA 60.440 61.111 1.91 0.00 0.00 4.37
128 129 3.891400 CGGCATTGCGGTGATGGG 61.891 66.667 7.96 0.00 0.00 4.00
129 130 3.133464 ACGGCATTGCGGTGATGG 61.133 61.111 19.57 0.00 40.43 3.51
198 202 2.172483 ATCACAGGGTCGACAGTGCC 62.172 60.000 22.47 13.51 32.25 5.01
199 203 0.737715 GATCACAGGGTCGACAGTGC 60.738 60.000 22.47 11.31 32.25 4.40
200 204 0.108615 GGATCACAGGGTCGACAGTG 60.109 60.000 18.91 20.63 0.00 3.66
201 205 1.595993 CGGATCACAGGGTCGACAGT 61.596 60.000 18.91 9.76 0.00 3.55
202 206 1.139734 CGGATCACAGGGTCGACAG 59.860 63.158 18.91 9.07 0.00 3.51
203 207 3.001902 GCGGATCACAGGGTCGACA 62.002 63.158 18.91 0.00 0.00 4.35
204 208 2.202756 GCGGATCACAGGGTCGAC 60.203 66.667 7.13 7.13 0.00 4.20
205 209 3.458163 GGCGGATCACAGGGTCGA 61.458 66.667 0.00 0.00 0.00 4.20
206 210 4.873129 CGGCGGATCACAGGGTCG 62.873 72.222 0.00 0.00 0.00 4.79
209 213 4.552365 ATGCGGCGGATCACAGGG 62.552 66.667 8.49 0.00 0.00 4.45
210 214 2.969238 GATGCGGCGGATCACAGG 60.969 66.667 32.15 0.00 0.00 4.00
211 215 3.333189 CGATGCGGCGGATCACAG 61.333 66.667 34.59 18.88 0.00 3.66
297 315 0.721718 GTGAACAAGCTCGATTCGGG 59.278 55.000 6.18 3.41 0.00 5.14
309 327 2.342279 CTCTCCGGCCGTGAACAA 59.658 61.111 26.12 8.32 0.00 2.83
366 384 3.385384 CACTCTGCTCCCGCTGGA 61.385 66.667 0.00 0.00 38.75 3.86
437 456 2.083715 TGGAGTCCCAACCCCAATC 58.916 57.895 6.74 0.00 40.09 2.67
438 457 4.367590 TGGAGTCCCAACCCCAAT 57.632 55.556 6.74 0.00 40.09 3.16
451 470 2.930385 ATTGCTCACCGCCGATGGAG 62.930 60.000 0.00 0.00 38.05 3.86
456 487 4.467084 GGGATTGCTCACCGCCGA 62.467 66.667 0.00 0.00 38.05 5.54
468 499 1.285962 CCACCTGGATCTGTTGGGATT 59.714 52.381 0.00 0.00 37.39 3.01
469 500 0.921896 CCACCTGGATCTGTTGGGAT 59.078 55.000 0.00 0.00 37.39 3.85
470 501 0.475632 ACCACCTGGATCTGTTGGGA 60.476 55.000 0.00 0.00 38.94 4.37
486 517 2.445085 ACCGAGTCACCACCACCA 60.445 61.111 0.00 0.00 0.00 4.17
487 518 2.342648 GACCGAGTCACCACCACC 59.657 66.667 0.00 0.00 32.09 4.61
488 519 2.342648 GGACCGAGTCACCACCAC 59.657 66.667 6.41 0.00 33.68 4.16
489 520 2.920912 GGGACCGAGTCACCACCA 60.921 66.667 6.41 0.00 33.68 4.17
501 532 1.065345 GCTGTAAGAAGGAAGGGGACC 60.065 57.143 0.00 0.00 45.83 4.46
503 534 1.909302 CAGCTGTAAGAAGGAAGGGGA 59.091 52.381 5.25 0.00 34.07 4.81
569 616 7.600065 AGCAATAAAAGACTACTCGTGAAGTA 58.400 34.615 0.00 0.00 39.55 2.24
576 623 7.591006 TTTGGTAGCAATAAAAGACTACTCG 57.409 36.000 8.40 0.00 36.19 4.18
589 636 9.949174 GACAAATTTTGAATTTTTGGTAGCAAT 57.051 25.926 15.81 0.00 35.23 3.56
612 691 8.873144 TGGATATCATTTCACATATCTGAGACA 58.127 33.333 4.83 0.00 33.91 3.41
618 697 7.066645 CGGCAATGGATATCATTTCACATATCT 59.933 37.037 4.83 0.00 43.04 1.98
619 698 7.066163 TCGGCAATGGATATCATTTCACATATC 59.934 37.037 4.83 0.00 43.04 1.63
620 699 6.885918 TCGGCAATGGATATCATTTCACATAT 59.114 34.615 4.83 0.00 43.04 1.78
626 705 4.999950 AGACTCGGCAATGGATATCATTTC 59.000 41.667 4.83 0.00 43.04 2.17
632 711 5.489792 AATGTAGACTCGGCAATGGATAT 57.510 39.130 0.00 0.00 0.00 1.63
635 714 3.704566 ACTAATGTAGACTCGGCAATGGA 59.295 43.478 0.00 0.00 0.00 3.41
636 715 4.060038 ACTAATGTAGACTCGGCAATGG 57.940 45.455 0.00 0.00 0.00 3.16
637 716 6.504398 TCTAACTAATGTAGACTCGGCAATG 58.496 40.000 0.00 0.00 0.00 2.82
638 717 6.710597 TCTAACTAATGTAGACTCGGCAAT 57.289 37.500 0.00 0.00 0.00 3.56
640 719 6.519679 TTTCTAACTAATGTAGACTCGGCA 57.480 37.500 0.00 0.00 0.00 5.69
641 720 7.256286 TCTTTTCTAACTAATGTAGACTCGGC 58.744 38.462 0.00 0.00 0.00 5.54
642 721 9.074443 GTTCTTTTCTAACTAATGTAGACTCGG 57.926 37.037 0.00 0.00 0.00 4.63
643 722 9.622004 TGTTCTTTTCTAACTAATGTAGACTCG 57.378 33.333 0.00 0.00 0.00 4.18
646 725 9.974750 GCATGTTCTTTTCTAACTAATGTAGAC 57.025 33.333 0.00 0.00 0.00 2.59
648 727 8.946085 TGGCATGTTCTTTTCTAACTAATGTAG 58.054 33.333 0.00 0.00 0.00 2.74
649 728 8.856153 TGGCATGTTCTTTTCTAACTAATGTA 57.144 30.769 0.00 0.00 0.00 2.29
650 729 7.759489 TGGCATGTTCTTTTCTAACTAATGT 57.241 32.000 0.00 0.00 0.00 2.71
651 730 9.294030 GATTGGCATGTTCTTTTCTAACTAATG 57.706 33.333 0.00 0.00 0.00 1.90
652 731 9.247861 AGATTGGCATGTTCTTTTCTAACTAAT 57.752 29.630 0.00 0.00 0.00 1.73
653 732 8.635765 AGATTGGCATGTTCTTTTCTAACTAA 57.364 30.769 0.00 0.00 0.00 2.24
654 733 8.514594 CAAGATTGGCATGTTCTTTTCTAACTA 58.485 33.333 5.43 0.00 0.00 2.24
655 734 7.014615 ACAAGATTGGCATGTTCTTTTCTAACT 59.985 33.333 5.43 0.00 0.00 2.24
656 735 7.147976 ACAAGATTGGCATGTTCTTTTCTAAC 58.852 34.615 5.43 0.00 0.00 2.34
658 737 6.899393 ACAAGATTGGCATGTTCTTTTCTA 57.101 33.333 5.43 0.00 0.00 2.10
660 739 6.652245 CAAACAAGATTGGCATGTTCTTTTC 58.348 36.000 4.80 0.00 37.43 2.29
661 740 5.007921 GCAAACAAGATTGGCATGTTCTTTT 59.992 36.000 4.80 0.00 37.43 2.27
663 742 4.060205 GCAAACAAGATTGGCATGTTCTT 58.940 39.130 4.80 3.81 37.43 2.52
664 743 3.656559 GCAAACAAGATTGGCATGTTCT 58.343 40.909 4.80 0.00 37.43 3.01
672 751 2.417933 CTCTCTCGGCAAACAAGATTGG 59.582 50.000 0.00 0.00 0.00 3.16
673 752 2.159599 GCTCTCTCGGCAAACAAGATTG 60.160 50.000 0.00 0.00 0.00 2.67
674 753 2.079925 GCTCTCTCGGCAAACAAGATT 58.920 47.619 0.00 0.00 0.00 2.40
676 755 0.320771 GGCTCTCTCGGCAAACAAGA 60.321 55.000 0.00 0.00 0.00 3.02
677 756 0.321122 AGGCTCTCTCGGCAAACAAG 60.321 55.000 0.00 0.00 0.00 3.16
678 757 0.603707 CAGGCTCTCTCGGCAAACAA 60.604 55.000 0.00 0.00 0.00 2.83
679 758 1.004560 CAGGCTCTCTCGGCAAACA 60.005 57.895 0.00 0.00 0.00 2.83
680 759 2.394563 GCAGGCTCTCTCGGCAAAC 61.395 63.158 0.00 0.00 0.00 2.93
681 760 2.046892 GCAGGCTCTCTCGGCAAA 60.047 61.111 0.00 0.00 0.00 3.68
682 761 2.999648 AGCAGGCTCTCTCGGCAA 61.000 61.111 0.00 0.00 0.00 4.52
683 762 3.767806 CAGCAGGCTCTCTCGGCA 61.768 66.667 0.00 0.00 0.00 5.69
686 765 0.459078 TGATTCAGCAGGCTCTCTCG 59.541 55.000 0.00 0.00 0.00 4.04
687 766 2.687700 TTGATTCAGCAGGCTCTCTC 57.312 50.000 0.00 0.00 0.00 3.20
688 767 4.767578 TTATTGATTCAGCAGGCTCTCT 57.232 40.909 0.00 0.00 0.00 3.10
689 768 5.824904 TTTTATTGATTCAGCAGGCTCTC 57.175 39.130 0.00 0.00 0.00 3.20
690 769 6.379133 TCATTTTTATTGATTCAGCAGGCTCT 59.621 34.615 0.00 0.00 0.00 4.09
691 770 6.567050 TCATTTTTATTGATTCAGCAGGCTC 58.433 36.000 0.00 0.00 0.00 4.70
692 771 6.154021 ACTCATTTTTATTGATTCAGCAGGCT 59.846 34.615 0.00 0.00 0.00 4.58
693 772 6.255020 CACTCATTTTTATTGATTCAGCAGGC 59.745 38.462 0.00 0.00 0.00 4.85
694 773 6.255020 GCACTCATTTTTATTGATTCAGCAGG 59.745 38.462 0.00 0.00 0.00 4.85
696 775 6.101332 GGCACTCATTTTTATTGATTCAGCA 58.899 36.000 0.00 0.00 0.00 4.41
697 776 6.101332 TGGCACTCATTTTTATTGATTCAGC 58.899 36.000 0.00 0.00 0.00 4.26
698 777 8.712285 ATTGGCACTCATTTTTATTGATTCAG 57.288 30.769 0.00 0.00 0.00 3.02
699 778 9.585099 GTATTGGCACTCATTTTTATTGATTCA 57.415 29.630 0.00 0.00 0.00 2.57
701 780 9.807649 GAGTATTGGCACTCATTTTTATTGATT 57.192 29.630 0.00 0.00 43.70 2.57
702 781 8.416329 GGAGTATTGGCACTCATTTTTATTGAT 58.584 33.333 6.02 0.00 45.64 2.57
703 782 7.615365 AGGAGTATTGGCACTCATTTTTATTGA 59.385 33.333 6.02 0.00 45.64 2.57
704 783 7.775120 AGGAGTATTGGCACTCATTTTTATTG 58.225 34.615 6.02 0.00 45.64 1.90
705 784 7.961326 AGGAGTATTGGCACTCATTTTTATT 57.039 32.000 6.02 0.00 45.64 1.40
706 785 7.961326 AAGGAGTATTGGCACTCATTTTTAT 57.039 32.000 6.02 0.00 44.69 1.40
708 916 7.775053 TTAAGGAGTATTGGCACTCATTTTT 57.225 32.000 8.47 0.21 44.69 1.94
710 918 7.067494 GTGATTAAGGAGTATTGGCACTCATTT 59.933 37.037 8.47 4.14 44.69 2.32
713 921 5.189736 AGTGATTAAGGAGTATTGGCACTCA 59.810 40.000 6.02 0.00 45.64 3.41
716 924 6.404734 CCAAAGTGATTAAGGAGTATTGGCAC 60.405 42.308 0.00 0.00 0.00 5.01
718 926 5.885912 TCCAAAGTGATTAAGGAGTATTGGC 59.114 40.000 0.00 0.00 35.81 4.52
719 927 7.829211 TCTTCCAAAGTGATTAAGGAGTATTGG 59.171 37.037 0.00 0.00 36.89 3.16
728 936 6.968131 TCGATGTCTTCCAAAGTGATTAAG 57.032 37.500 0.00 0.00 0.00 1.85
730 938 6.255670 CGATTCGATGTCTTCCAAAGTGATTA 59.744 38.462 0.00 0.00 0.00 1.75
732 940 4.568359 CGATTCGATGTCTTCCAAAGTGAT 59.432 41.667 0.00 0.00 0.00 3.06
734 942 3.484229 GCGATTCGATGTCTTCCAAAGTG 60.484 47.826 10.88 0.00 0.00 3.16
740 948 4.051922 AGTTATGCGATTCGATGTCTTCC 58.948 43.478 10.88 0.00 0.00 3.46
742 950 5.220662 CCAAAGTTATGCGATTCGATGTCTT 60.221 40.000 10.88 4.50 0.00 3.01
744 952 4.270084 TCCAAAGTTATGCGATTCGATGTC 59.730 41.667 10.88 0.00 0.00 3.06
745 953 4.188462 TCCAAAGTTATGCGATTCGATGT 58.812 39.130 10.88 0.00 0.00 3.06
746 954 4.794248 TCCAAAGTTATGCGATTCGATG 57.206 40.909 10.88 0.00 0.00 3.84
747 955 4.214119 CCATCCAAAGTTATGCGATTCGAT 59.786 41.667 10.88 3.47 0.00 3.59
748 956 3.559655 CCATCCAAAGTTATGCGATTCGA 59.440 43.478 10.88 0.00 0.00 3.71
754 1055 4.339247 AGAAATCCCATCCAAAGTTATGCG 59.661 41.667 0.00 0.00 0.00 4.73
756 1057 8.971073 AGTAAAGAAATCCCATCCAAAGTTATG 58.029 33.333 0.00 0.00 0.00 1.90
760 1061 6.314917 ACAGTAAAGAAATCCCATCCAAAGT 58.685 36.000 0.00 0.00 0.00 2.66
761 1062 6.840780 ACAGTAAAGAAATCCCATCCAAAG 57.159 37.500 0.00 0.00 0.00 2.77
776 1077 6.551736 CCATCCGGAAATGTAAACAGTAAAG 58.448 40.000 9.01 0.00 0.00 1.85
778 1079 4.396790 GCCATCCGGAAATGTAAACAGTAA 59.603 41.667 9.01 0.00 0.00 2.24
779 1080 3.942748 GCCATCCGGAAATGTAAACAGTA 59.057 43.478 9.01 0.00 0.00 2.74
780 1081 2.752903 GCCATCCGGAAATGTAAACAGT 59.247 45.455 9.01 0.00 0.00 3.55
796 1107 7.818930 TCAAATCCAAAATGTAGAAAAGCCATC 59.181 33.333 0.00 0.00 0.00 3.51
797 1108 7.678837 TCAAATCCAAAATGTAGAAAAGCCAT 58.321 30.769 0.00 0.00 0.00 4.40
800 1111 8.992073 ACAATCAAATCCAAAATGTAGAAAAGC 58.008 29.630 0.00 0.00 0.00 3.51
817 1128 3.331150 CTGGCATGCACAACAATCAAAT 58.669 40.909 21.36 0.00 0.00 2.32
819 1130 1.001068 CCTGGCATGCACAACAATCAA 59.999 47.619 21.36 0.00 0.00 2.57
823 1134 1.001068 CATTCCTGGCATGCACAACAA 59.999 47.619 21.36 10.22 0.00 2.83
824 1135 0.604073 CATTCCTGGCATGCACAACA 59.396 50.000 21.36 7.13 0.00 3.33
826 1137 2.278849 CCATTCCTGGCATGCACAA 58.721 52.632 21.36 6.17 35.23 3.33
835 1146 0.830648 TCCTTAGTCGCCATTCCTGG 59.169 55.000 0.00 0.00 46.17 4.45
836 1147 2.280628 GTTCCTTAGTCGCCATTCCTG 58.719 52.381 0.00 0.00 0.00 3.86
837 1148 1.906574 TGTTCCTTAGTCGCCATTCCT 59.093 47.619 0.00 0.00 0.00 3.36
838 1149 2.396590 TGTTCCTTAGTCGCCATTCC 57.603 50.000 0.00 0.00 0.00 3.01
839 1150 3.751698 AGTTTGTTCCTTAGTCGCCATTC 59.248 43.478 0.00 0.00 0.00 2.67
840 1151 3.751518 AGTTTGTTCCTTAGTCGCCATT 58.248 40.909 0.00 0.00 0.00 3.16
841 1152 3.244422 TGAGTTTGTTCCTTAGTCGCCAT 60.244 43.478 0.00 0.00 0.00 4.40
842 1153 2.103432 TGAGTTTGTTCCTTAGTCGCCA 59.897 45.455 0.00 0.00 0.00 5.69
843 1154 2.737252 CTGAGTTTGTTCCTTAGTCGCC 59.263 50.000 0.00 0.00 0.00 5.54
844 1155 2.737252 CCTGAGTTTGTTCCTTAGTCGC 59.263 50.000 0.00 0.00 0.00 5.19
845 1156 3.991367 ACCTGAGTTTGTTCCTTAGTCG 58.009 45.455 0.00 0.00 0.00 4.18
846 1157 6.095021 ACAAAACCTGAGTTTGTTCCTTAGTC 59.905 38.462 0.00 0.00 45.54 2.59
847 1158 5.949952 ACAAAACCTGAGTTTGTTCCTTAGT 59.050 36.000 0.00 0.00 45.54 2.24
848 1159 6.451064 ACAAAACCTGAGTTTGTTCCTTAG 57.549 37.500 0.00 0.00 45.54 2.18
849 1160 6.844097 AACAAAACCTGAGTTTGTTCCTTA 57.156 33.333 7.78 0.00 45.54 2.69
850 1161 5.738619 AACAAAACCTGAGTTTGTTCCTT 57.261 34.783 7.78 0.00 45.54 3.36
851 1162 5.738619 AAACAAAACCTGAGTTTGTTCCT 57.261 34.783 12.43 0.00 45.54 3.36
852 1163 6.795098 AAAAACAAAACCTGAGTTTGTTCC 57.205 33.333 12.43 0.00 45.54 3.62
874 1185 1.691434 GACCCCTGCAACAATTCCAAA 59.309 47.619 0.00 0.00 0.00 3.28
875 1186 1.337118 GACCCCTGCAACAATTCCAA 58.663 50.000 0.00 0.00 0.00 3.53
887 1198 3.812019 CCTCGTCGTCGACCCCTG 61.812 72.222 19.29 5.77 41.35 4.45
895 1206 0.819582 TATTGGTTCCCCTCGTCGTC 59.180 55.000 0.00 0.00 0.00 4.20
898 1212 2.773993 TTGTATTGGTTCCCCTCGTC 57.226 50.000 0.00 0.00 0.00 4.20
899 1213 3.512219 TTTTGTATTGGTTCCCCTCGT 57.488 42.857 0.00 0.00 0.00 4.18
904 1218 3.864540 GCCTGCTTTTTGTATTGGTTCCC 60.865 47.826 0.00 0.00 0.00 3.97
905 1219 3.006859 AGCCTGCTTTTTGTATTGGTTCC 59.993 43.478 0.00 0.00 0.00 3.62
906 1220 4.257267 AGCCTGCTTTTTGTATTGGTTC 57.743 40.909 0.00 0.00 0.00 3.62
907 1221 4.100808 TGAAGCCTGCTTTTTGTATTGGTT 59.899 37.500 5.76 0.00 36.26 3.67
908 1222 3.640967 TGAAGCCTGCTTTTTGTATTGGT 59.359 39.130 5.76 0.00 36.26 3.67
909 1223 4.255833 TGAAGCCTGCTTTTTGTATTGG 57.744 40.909 5.76 0.00 36.26 3.16
910 1224 6.347888 CCAAATGAAGCCTGCTTTTTGTATTG 60.348 38.462 19.68 13.12 34.49 1.90
912 1226 5.221702 ACCAAATGAAGCCTGCTTTTTGTAT 60.222 36.000 19.68 10.40 34.49 2.29
913 1227 4.100808 ACCAAATGAAGCCTGCTTTTTGTA 59.899 37.500 19.68 3.57 34.49 2.41
915 1229 3.249080 CACCAAATGAAGCCTGCTTTTTG 59.751 43.478 16.60 16.60 36.26 2.44
916 1230 3.469739 CACCAAATGAAGCCTGCTTTTT 58.530 40.909 5.76 1.05 36.26 1.94
917 1231 2.224354 CCACCAAATGAAGCCTGCTTTT 60.224 45.455 5.76 0.00 36.26 2.27
920 1234 0.178953 ACCACCAAATGAAGCCTGCT 60.179 50.000 0.00 0.00 0.00 4.24
921 1235 1.474077 CTACCACCAAATGAAGCCTGC 59.526 52.381 0.00 0.00 0.00 4.85
922 1236 3.071874 TCTACCACCAAATGAAGCCTG 57.928 47.619 0.00 0.00 0.00 4.85
923 1237 4.019174 CAATCTACCACCAAATGAAGCCT 58.981 43.478 0.00 0.00 0.00 4.58
924 1238 4.016444 TCAATCTACCACCAAATGAAGCC 58.984 43.478 0.00 0.00 0.00 4.35
927 1241 9.645128 ATCAATATCAATCTACCACCAAATGAA 57.355 29.630 0.00 0.00 0.00 2.57
936 1260 9.625747 TGCAACTTTATCAATATCAATCTACCA 57.374 29.630 0.00 0.00 0.00 3.25
953 1277 9.251792 CGTGGTACAACTATATATGCAACTTTA 57.748 33.333 0.00 0.00 44.16 1.85
955 1279 7.270047 ACGTGGTACAACTATATATGCAACTT 58.730 34.615 0.00 0.00 44.16 2.66
957 1281 7.473027 AACGTGGTACAACTATATATGCAAC 57.527 36.000 0.00 0.00 44.16 4.17
958 1282 8.631797 TCTAACGTGGTACAACTATATATGCAA 58.368 33.333 0.00 0.00 44.16 4.08
959 1283 8.077991 GTCTAACGTGGTACAACTATATATGCA 58.922 37.037 0.00 0.00 44.16 3.96
960 1284 8.295288 AGTCTAACGTGGTACAACTATATATGC 58.705 37.037 0.00 0.00 44.16 3.14
963 1287 8.840321 GGAAGTCTAACGTGGTACAACTATATA 58.160 37.037 0.00 0.00 44.16 0.86
966 1290 5.392380 CGGAAGTCTAACGTGGTACAACTAT 60.392 44.000 0.00 0.00 44.16 2.12
971 1295 1.541147 CCGGAAGTCTAACGTGGTACA 59.459 52.381 0.00 0.00 0.00 2.90
973 1297 1.812571 GTCCGGAAGTCTAACGTGGTA 59.187 52.381 5.23 0.00 0.00 3.25
975 1299 0.599558 TGTCCGGAAGTCTAACGTGG 59.400 55.000 5.23 0.00 0.00 4.94
979 1303 6.338937 ACATATTCTTGTCCGGAAGTCTAAC 58.661 40.000 5.23 0.00 0.00 2.34
981 1305 6.540438 AACATATTCTTGTCCGGAAGTCTA 57.460 37.500 5.23 0.00 0.00 2.59
989 1313 4.275936 GGATCCCAAACATATTCTTGTCCG 59.724 45.833 0.00 0.00 0.00 4.79
1029 1353 1.588404 CTCGGGTTGAAATCGTCATCG 59.412 52.381 0.00 0.00 35.70 3.84
1347 1671 2.827921 TGTGAGCACTGATAGCTTGAGA 59.172 45.455 0.00 0.00 43.58 3.27
1542 1866 5.751990 GGAAAGGTATGTACTTACATGGTCG 59.248 44.000 17.78 0.00 45.77 4.79
1566 1890 3.876914 TCTTAATTTGCTCCTGGTATGCG 59.123 43.478 0.00 0.00 0.00 4.73
1567 1891 4.884164 ACTCTTAATTTGCTCCTGGTATGC 59.116 41.667 0.00 0.00 0.00 3.14
1569 1893 7.195374 TGTACTCTTAATTTGCTCCTGGTAT 57.805 36.000 0.00 0.00 0.00 2.73
1573 1897 8.668510 ATGTATGTACTCTTAATTTGCTCCTG 57.331 34.615 0.00 0.00 0.00 3.86
1630 1954 9.639563 TCCAGGATGTTGCTCATTAATAATTTA 57.360 29.630 0.00 0.00 36.83 1.40
1655 1979 3.630769 TGAATCCATCTGATGCTTGCTTC 59.369 43.478 12.17 6.98 32.68 3.86
1690 2014 6.949715 ACCAATGAAGCATATGAAAACCAAT 58.050 32.000 6.97 0.00 0.00 3.16
1698 2022 4.646040 CCCTCAAACCAATGAAGCATATGA 59.354 41.667 6.97 0.00 0.00 2.15
1699 2023 4.403432 ACCCTCAAACCAATGAAGCATATG 59.597 41.667 0.00 0.00 0.00 1.78
1721 2045 2.555757 AGGAGAATGCTGCTTGAAACAC 59.444 45.455 0.00 0.00 40.18 3.32
1727 2051 5.996513 AGTATGAATAGGAGAATGCTGCTTG 59.003 40.000 0.00 0.00 40.18 4.01
1740 2064 5.727791 GCAGCAAACGACAAGTATGAATAGG 60.728 44.000 0.00 0.00 0.00 2.57
1754 2081 2.727544 GGCCTTTGCAGCAAACGA 59.272 55.556 16.93 0.00 40.13 3.85
1755 2082 2.356194 GGGCCTTTGCAGCAAACG 60.356 61.111 16.93 13.80 40.13 3.60
1767 2094 4.388577 AGATCAACTACAAAAAGGGCCT 57.611 40.909 0.00 0.00 0.00 5.19
1831 2187 5.064452 GCTGATAAGTGAGGACAACAATCTG 59.936 44.000 0.00 0.00 0.00 2.90
1862 2218 8.330247 TCACCAAACTAGTTTATATAAAGCCCA 58.670 33.333 20.15 0.00 0.00 5.36
1872 2228 8.918202 TTCACAGATTCACCAAACTAGTTTAT 57.082 30.769 20.15 10.09 0.00 1.40
1875 2231 6.357367 ACTTCACAGATTCACCAAACTAGTT 58.643 36.000 1.12 1.12 0.00 2.24
1880 2236 7.382218 CCATTTTACTTCACAGATTCACCAAAC 59.618 37.037 0.00 0.00 0.00 2.93
1883 2239 6.303054 TCCATTTTACTTCACAGATTCACCA 58.697 36.000 0.00 0.00 0.00 4.17
1906 2263 5.356470 GGAGATCCTATAATGGCAAAGCATC 59.644 44.000 0.00 0.00 0.00 3.91
1944 2301 0.251297 TGTTCAACCAGGGATGGCAG 60.251 55.000 0.00 0.00 0.00 4.85
2022 2379 3.737559 ACCTGGCAATATCCAACTTCA 57.262 42.857 0.00 0.00 35.36 3.02
2049 2406 1.238439 ATGAACAAGAACCTGGCACG 58.762 50.000 0.00 0.00 0.00 5.34
2069 2426 9.431887 GGTTCTATGTGAGACAAATTACAGTTA 57.568 33.333 0.00 0.00 32.31 2.24
2072 2429 7.278868 GGAGGTTCTATGTGAGACAAATTACAG 59.721 40.741 0.00 0.00 32.31 2.74
2081 2438 5.680151 GCTGTTAGGAGGTTCTATGTGAGAC 60.680 48.000 0.00 0.00 32.31 3.36
2092 2449 4.775780 TGTAGTACATGCTGTTAGGAGGTT 59.224 41.667 0.00 0.00 31.79 3.50
2105 2462 8.506168 ACATAATTCAAACCCTGTAGTACATG 57.494 34.615 2.82 0.66 0.00 3.21
2141 2498 4.237724 TCTGTCTTCATAACGAGCAACAG 58.762 43.478 0.00 0.00 33.69 3.16
2491 2849 7.604927 CACTGGTACCAAGCAATAAGTAAACTA 59.395 37.037 17.11 0.00 31.48 2.24
2501 2859 5.570320 AGATAAACACTGGTACCAAGCAAT 58.430 37.500 17.11 5.03 31.48 3.56
2502 2860 4.980573 AGATAAACACTGGTACCAAGCAA 58.019 39.130 17.11 0.00 31.48 3.91
2503 2861 4.634012 AGATAAACACTGGTACCAAGCA 57.366 40.909 17.11 1.54 0.00 3.91
2504 2862 4.571176 GCTAGATAAACACTGGTACCAAGC 59.429 45.833 17.11 13.61 0.00 4.01
2505 2863 5.104900 AGGCTAGATAAACACTGGTACCAAG 60.105 44.000 17.11 13.87 0.00 3.61
2506 2864 4.781087 AGGCTAGATAAACACTGGTACCAA 59.219 41.667 17.11 0.00 0.00 3.67
2507 2865 4.161565 CAGGCTAGATAAACACTGGTACCA 59.838 45.833 15.39 15.39 0.00 3.25
2512 2870 4.471904 TGACAGGCTAGATAAACACTGG 57.528 45.455 0.00 0.00 0.00 4.00
2525 2883 3.087031 CTGGACAAATCATTGACAGGCT 58.913 45.455 0.00 0.00 39.30 4.58
2526 2884 3.084039 TCTGGACAAATCATTGACAGGC 58.916 45.455 13.58 0.00 41.23 4.85
2527 2885 4.763793 AGTTCTGGACAAATCATTGACAGG 59.236 41.667 13.58 0.00 41.23 4.00
2529 2887 6.998074 AGTAAGTTCTGGACAAATCATTGACA 59.002 34.615 0.00 0.00 38.94 3.58
2543 2901 6.206634 TGAAATGGCTTTACAGTAAGTTCTGG 59.793 38.462 0.00 0.00 39.48 3.86
2551 2909 7.448777 TGGTAATTGTGAAATGGCTTTACAGTA 59.551 33.333 0.00 0.00 0.00 2.74
2560 2918 7.200778 ACAAAAATGGTAATTGTGAAATGGC 57.799 32.000 0.00 0.00 36.03 4.40
2571 2929 8.037758 TCTGTTCACAACAACAAAAATGGTAAT 58.962 29.630 0.00 0.00 41.61 1.89
2605 2963 1.874129 ATAGAACATCCCACACCCGA 58.126 50.000 0.00 0.00 0.00 5.14
2683 3041 6.022163 ACATGGAAAGAGCAGATTTTCTTG 57.978 37.500 0.00 0.00 34.09 3.02
2694 3052 4.202253 ACTTTGGGAAAACATGGAAAGAGC 60.202 41.667 0.00 0.00 0.00 4.09
2900 3258 4.295141 TGTATCTGTGGGTACAAAAGGG 57.705 45.455 0.00 0.00 36.14 3.95
2922 3280 4.020307 TGTGCATCATCCTGACTACTTCAA 60.020 41.667 0.00 0.00 32.21 2.69
2957 3316 2.037251 TCTTGGTGTTCCAGCTCAGTAC 59.963 50.000 0.00 0.00 45.22 2.73
2961 3320 2.727123 TTTCTTGGTGTTCCAGCTCA 57.273 45.000 0.00 0.00 45.22 4.26
2962 3321 4.518970 TGTAATTTCTTGGTGTTCCAGCTC 59.481 41.667 0.00 0.00 45.22 4.09
2991 3350 2.159572 CCAAATTACGGGCGACTTTCAG 60.160 50.000 0.00 0.00 0.00 3.02
3000 3359 3.427098 GCAAACTACTCCAAATTACGGGC 60.427 47.826 0.00 0.00 0.00 6.13
3003 3362 4.793216 GCATGCAAACTACTCCAAATTACG 59.207 41.667 14.21 0.00 0.00 3.18
3007 3366 4.523943 TGAAGCATGCAAACTACTCCAAAT 59.476 37.500 21.98 0.00 0.00 2.32
3048 3432 5.467738 ACATGGATAGGTCAGACTCCAATA 58.532 41.667 12.77 0.00 40.94 1.90
3050 3434 3.724478 ACATGGATAGGTCAGACTCCAA 58.276 45.455 12.77 0.00 40.94 3.53
3062 3446 7.120726 AGGAAAGAAAACGGTAAACATGGATAG 59.879 37.037 0.00 0.00 0.00 2.08
3068 3452 7.812690 AACTAGGAAAGAAAACGGTAAACAT 57.187 32.000 0.00 0.00 0.00 2.71
3077 3461 6.492254 TCGAAAGCAAACTAGGAAAGAAAAC 58.508 36.000 0.00 0.00 0.00 2.43
3135 3519 1.600485 TCGTGCCGTTTCCTTTCTTTC 59.400 47.619 0.00 0.00 0.00 2.62
3276 3661 0.318784 ACAGTGTCGTCTCGCCTTTC 60.319 55.000 0.00 0.00 0.00 2.62
3292 3677 2.289002 GGAACTGAGTGCAAACTCACAG 59.711 50.000 4.48 0.97 41.34 3.66
3293 3678 2.092968 AGGAACTGAGTGCAAACTCACA 60.093 45.455 4.48 0.00 41.34 3.58
3309 3694 2.569404 AGAATCCAGTCTGACCAGGAAC 59.431 50.000 19.45 16.27 33.17 3.62
3349 3734 1.208535 TGTTTTCAGTGGACCACGAGT 59.791 47.619 18.93 0.00 39.64 4.18
3354 3739 3.221771 CATTCCTGTTTTCAGTGGACCA 58.778 45.455 0.00 0.00 45.68 4.02
3590 3977 9.595357 GCAAGATCAAGTTACTAGTAAAAACAC 57.405 33.333 16.82 5.30 0.00 3.32
3600 3988 5.178797 GCCAGAAGCAAGATCAAGTTACTA 58.821 41.667 0.00 0.00 42.97 1.82
3602 3990 4.348198 GCCAGAAGCAAGATCAAGTTAC 57.652 45.455 0.00 0.00 42.97 2.50
3623 4011 6.075762 TCAAATCCATGTCACAACTTCAAG 57.924 37.500 0.00 0.00 0.00 3.02
3713 4101 5.036117 ACAGCTCAGTTTTCTAGGTCAAA 57.964 39.130 0.00 0.00 0.00 2.69
3734 4205 4.251268 ACGGCTTCTAAACACAATCCTAC 58.749 43.478 0.00 0.00 0.00 3.18
3735 4206 4.546829 ACGGCTTCTAAACACAATCCTA 57.453 40.909 0.00 0.00 0.00 2.94
3787 4258 4.990426 GGTAGCTTACTTGAACGTTTGGTA 59.010 41.667 0.46 3.67 0.00 3.25
3798 4269 4.216257 ACACTTGCAATGGTAGCTTACTTG 59.784 41.667 0.00 0.00 0.00 3.16
3804 4275 2.749621 GCTTACACTTGCAATGGTAGCT 59.250 45.455 18.66 0.00 0.00 3.32
3806 4277 4.726416 CTTGCTTACACTTGCAATGGTAG 58.274 43.478 0.00 4.33 46.20 3.18
3809 4280 2.288334 TGCTTGCTTACACTTGCAATGG 60.288 45.455 0.00 0.00 46.20 3.16
3820 4291 3.671702 GCCACTCTGATTTGCTTGCTTAC 60.672 47.826 0.00 0.00 0.00 2.34
3824 4295 0.455633 CGCCACTCTGATTTGCTTGC 60.456 55.000 0.00 0.00 0.00 4.01
3970 6750 5.314529 CTCATCATCAAGGCCAATCATACT 58.685 41.667 5.01 0.00 0.00 2.12
3981 6762 1.063616 CGCAACTGCTCATCATCAAGG 59.936 52.381 0.00 0.00 39.32 3.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.