Multiple sequence alignment - TraesCS1A01G023500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G023500 chr1A 100.000 7833 0 0 1 7833 11577714 11585546 0.000000e+00 14465.0
1 TraesCS1A01G023500 chr1A 82.931 2648 371 45 3473 6059 11629850 11632477 0.000000e+00 2311.0
2 TraesCS1A01G023500 chr1A 89.726 730 71 4 6106 6833 11632482 11633209 0.000000e+00 929.0
3 TraesCS1A01G023500 chr1A 80.236 339 48 16 2652 2977 531022248 531021916 3.650000e-58 237.0
4 TraesCS1A01G023500 chr1A 88.068 176 18 3 2472 2646 534639021 534638848 1.030000e-48 206.0
5 TraesCS1A01G023500 chr1A 86.325 117 14 2 7650 7765 11634135 11634250 8.250000e-25 126.0
6 TraesCS1A01G023500 chr1A 85.345 116 17 0 2359 2474 531022381 531022266 3.840000e-23 121.0
7 TraesCS1A01G023500 chr1D 86.850 2616 298 27 3473 6064 9807591 9810184 0.000000e+00 2883.0
8 TraesCS1A01G023500 chr1D 85.022 2704 351 36 3382 6058 9775737 9778413 0.000000e+00 2700.0
9 TraesCS1A01G023500 chr1D 91.977 1745 99 11 6109 7833 9810187 9811910 0.000000e+00 2409.0
10 TraesCS1A01G023500 chr1D 82.824 850 109 24 6146 6963 9778459 9779303 0.000000e+00 726.0
11 TraesCS1A01G023500 chr1D 92.857 182 10 3 2469 2648 178466474 178466294 2.170000e-65 261.0
12 TraesCS1A01G023500 chr1B 85.301 2007 273 15 4059 6058 14459604 14461595 0.000000e+00 2052.0
13 TraesCS1A01G023500 chr1B 80.680 2324 419 23 3761 6068 14162701 14165010 0.000000e+00 1777.0
14 TraesCS1A01G023500 chr1B 81.191 2217 380 21 3859 6061 14652599 14654792 0.000000e+00 1749.0
15 TraesCS1A01G023500 chr1B 79.613 2222 423 28 3852 6064 14565562 14567762 0.000000e+00 1567.0
16 TraesCS1A01G023500 chr1B 93.743 863 45 7 1 860 14157951 14158807 0.000000e+00 1286.0
17 TraesCS1A01G023500 chr1B 81.308 1498 237 27 3654 5143 14622395 14623857 0.000000e+00 1175.0
18 TraesCS1A01G023500 chr1B 90.400 750 69 3 1513 2260 14528511 14529259 0.000000e+00 983.0
19 TraesCS1A01G023500 chr1B 92.272 647 46 3 1214 1859 14159278 14159921 0.000000e+00 915.0
20 TraesCS1A01G023500 chr1B 90.236 635 58 4 2910 3544 14531024 14531654 0.000000e+00 826.0
21 TraesCS1A01G023500 chr1B 84.172 815 126 2 5244 6058 14623856 14624667 0.000000e+00 787.0
22 TraesCS1A01G023500 chr1B 88.650 652 48 12 872 1503 14527005 14527650 0.000000e+00 771.0
23 TraesCS1A01G023500 chr1B 84.926 743 88 14 782 1503 14609217 14609956 0.000000e+00 730.0
24 TraesCS1A01G023500 chr1B 82.665 848 108 26 6147 6963 14461642 14462481 0.000000e+00 715.0
25 TraesCS1A01G023500 chr1B 82.401 858 116 21 6135 6963 14654824 14655675 0.000000e+00 715.0
26 TraesCS1A01G023500 chr1B 84.949 691 92 8 6147 6834 14624714 14625395 0.000000e+00 689.0
27 TraesCS1A01G023500 chr1B 85.000 620 67 14 818 1418 14449652 14450264 2.420000e-169 606.0
28 TraesCS1A01G023500 chr1B 79.433 846 138 26 6146 6963 14542064 14542901 4.100000e-157 566.0
29 TraesCS1A01G023500 chr1B 95.322 342 15 1 860 1200 14158865 14159206 6.910000e-150 542.0
30 TraesCS1A01G023500 chr1B 84.733 524 69 9 744 1257 14634529 14635051 1.510000e-141 514.0
31 TraesCS1A01G023500 chr1B 90.643 342 19 9 2634 2965 14530678 14531016 7.210000e-120 442.0
32 TraesCS1A01G023500 chr1B 88.286 350 25 10 5 342 14526493 14526838 9.460000e-109 405.0
33 TraesCS1A01G023500 chr1B 92.903 155 8 3 500 652 14526848 14527001 1.020000e-53 222.0
34 TraesCS1A01G023500 chr1B 92.857 42 3 0 2361 2402 638059050 638059009 2.360000e-05 62.1
35 TraesCS1A01G023500 chr7D 83.232 328 39 13 2638 2952 138505489 138505165 3.580000e-73 287.0
36 TraesCS1A01G023500 chr7D 81.229 293 42 12 2652 2935 6568922 6568634 2.840000e-54 224.0
37 TraesCS1A01G023500 chr6D 95.882 170 5 2 2471 2638 406391357 406391526 2.780000e-69 274.0
38 TraesCS1A01G023500 chr6D 73.884 605 89 30 2896 3456 461870176 461870755 2.250000e-40 178.0
39 TraesCS1A01G023500 chr6D 86.047 86 11 1 2390 2475 57031615 57031699 3.010000e-14 91.6
40 TraesCS1A01G023500 chr6D 81.481 108 13 6 2365 2470 3107944 3107842 1.810000e-11 82.4
41 TraesCS1A01G023500 chr2A 76.370 584 93 30 2910 3479 25129379 25129931 1.000000e-68 272.0
42 TraesCS1A01G023500 chr2A 83.784 111 16 2 2365 2474 3900316 3900207 3.870000e-18 104.0
43 TraesCS1A01G023500 chr7A 95.322 171 7 1 2469 2638 604387510 604387340 3.600000e-68 270.0
44 TraesCS1A01G023500 chr7A 82.315 311 39 13 2637 2935 138734545 138734239 1.010000e-63 255.0
45 TraesCS1A01G023500 chr7A 78.212 358 50 20 2638 2971 108228491 108228138 3.710000e-48 204.0
46 TraesCS1A01G023500 chr7A 79.452 292 47 8 2638 2920 1314958 1315245 2.230000e-45 195.0
47 TraesCS1A01G023500 chr5A 94.828 174 7 2 2468 2639 555280765 555280938 3.600000e-68 270.0
48 TraesCS1A01G023500 chr2B 95.322 171 7 1 2471 2640 769268638 769268468 3.600000e-68 270.0
49 TraesCS1A01G023500 chr2B 74.014 558 103 26 2912 3439 246062405 246061860 1.040000e-43 189.0
50 TraesCS1A01G023500 chr5B 93.443 183 9 3 2465 2644 427931374 427931192 1.300000e-67 268.0
51 TraesCS1A01G023500 chr5B 93.220 59 4 0 3036 3094 34770724 34770782 3.890000e-13 87.9
52 TraesCS1A01G023500 chr4B 94.798 173 8 1 2472 2643 585609289 585609117 1.300000e-67 268.0
53 TraesCS1A01G023500 chr4B 83.117 77 13 0 3041 3117 88427694 88427618 3.920000e-08 71.3
54 TraesCS1A01G023500 chr2D 93.855 179 9 2 2471 2647 396613965 396613787 1.300000e-67 268.0
55 TraesCS1A01G023500 chr3B 93.855 179 8 3 2472 2648 447011115 447010938 4.660000e-67 267.0
56 TraesCS1A01G023500 chr3B 79.252 294 46 13 2638 2921 123633613 123633325 2.880000e-44 191.0
57 TraesCS1A01G023500 chr3B 81.095 201 34 4 3255 3454 283586236 283586433 2.930000e-34 158.0
58 TraesCS1A01G023500 chr3B 84.483 116 18 0 2359 2474 732835956 732836071 1.790000e-21 115.0
59 TraesCS1A01G023500 chr3D 75.856 555 91 31 2913 3444 231133211 231133745 7.850000e-60 243.0
60 TraesCS1A01G023500 chr3D 80.896 335 38 13 2912 3242 1649606 1649918 2.820000e-59 241.0
61 TraesCS1A01G023500 chr3D 79.656 349 47 21 2638 2973 342811042 342811379 6.110000e-56 230.0
62 TraesCS1A01G023500 chr3D 76.947 321 51 17 2652 2956 450237011 450236698 2.260000e-35 161.0
63 TraesCS1A01G023500 chr3D 82.184 174 17 14 2306 2470 450237199 450237031 3.810000e-28 137.0
64 TraesCS1A01G023500 chr3D 88.462 78 9 0 2390 2467 330635665 330635742 2.330000e-15 95.3
65 TraesCS1A01G023500 chr3A 88.718 195 17 5 2444 2635 692357403 692357211 4.730000e-57 233.0
66 TraesCS1A01G023500 chr6B 85.427 199 21 8 2447 2638 275293764 275293567 4.790000e-47 200.0
67 TraesCS1A01G023500 chr6B 82.126 207 30 7 2893 3094 560180325 560180529 3.760000e-38 171.0
68 TraesCS1A01G023500 chr6B 76.401 339 45 20 2986 3317 38734948 38734638 4.900000e-32 150.0
69 TraesCS1A01G023500 chr6B 80.588 170 30 3 2926 3094 540604358 540604191 2.290000e-25 128.0
70 TraesCS1A01G023500 chr6B 97.674 43 1 0 2360 2402 266835044 266835086 3.030000e-09 75.0
71 TraesCS1A01G023500 chr4A 77.285 383 56 27 2635 2999 589009857 589010226 6.200000e-46 196.0
72 TraesCS1A01G023500 chr4A 80.976 205 31 6 3256 3456 576589146 576589346 1.050000e-33 156.0
73 TraesCS1A01G023500 chr4A 96.000 50 1 1 2354 2402 594265553 594265504 6.520000e-11 80.5
74 TraesCS1A01G023500 chr4D 77.381 336 46 21 2653 2966 366221946 366221619 1.040000e-38 172.0
75 TraesCS1A01G023500 chr4D 75.275 364 61 22 2657 2999 465187433 465187078 6.330000e-31 147.0
76 TraesCS1A01G023500 chr4D 80.296 203 26 3 3256 3456 26913308 26913118 2.950000e-29 141.0
77 TraesCS1A01G023500 chr4D 82.353 102 11 5 2306 2402 24107941 24108040 1.810000e-11 82.4
78 TraesCS1A01G023500 chr5D 79.825 228 40 6 2891 3117 558281657 558281435 2.260000e-35 161.0
79 TraesCS1A01G023500 chr7B 83.621 116 18 1 2358 2473 676416236 676416122 2.990000e-19 108.0
80 TraesCS1A01G023500 chr7B 82.955 88 12 3 2316 2400 699249164 699249077 8.430000e-10 76.8
81 TraesCS1A01G023500 chr6A 86.364 88 11 1 2387 2474 71662251 71662337 2.330000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G023500 chr1A 11577714 11585546 7832 False 14465.000000 14465 100.000000 1 7833 1 chr1A.!!$F1 7832
1 TraesCS1A01G023500 chr1A 11629850 11634250 4400 False 1122.000000 2311 86.327333 3473 7765 3 chr1A.!!$F2 4292
2 TraesCS1A01G023500 chr1D 9807591 9811910 4319 False 2646.000000 2883 89.413500 3473 7833 2 chr1D.!!$F2 4360
3 TraesCS1A01G023500 chr1D 9775737 9779303 3566 False 1713.000000 2700 83.923000 3382 6963 2 chr1D.!!$F1 3581
4 TraesCS1A01G023500 chr1B 14565562 14567762 2200 False 1567.000000 1567 79.613000 3852 6064 1 chr1B.!!$F3 2212
5 TraesCS1A01G023500 chr1B 14459604 14462481 2877 False 1383.500000 2052 83.983000 4059 6963 2 chr1B.!!$F7 2904
6 TraesCS1A01G023500 chr1B 14652599 14655675 3076 False 1232.000000 1749 81.796000 3859 6963 2 chr1B.!!$F10 3104
7 TraesCS1A01G023500 chr1B 14157951 14165010 7059 False 1130.000000 1777 90.504250 1 6068 4 chr1B.!!$F6 6067
8 TraesCS1A01G023500 chr1B 14622395 14625395 3000 False 883.666667 1175 83.476333 3654 6834 3 chr1B.!!$F9 3180
9 TraesCS1A01G023500 chr1B 14609217 14609956 739 False 730.000000 730 84.926000 782 1503 1 chr1B.!!$F4 721
10 TraesCS1A01G023500 chr1B 14526493 14531654 5161 False 608.166667 983 90.186333 5 3544 6 chr1B.!!$F8 3539
11 TraesCS1A01G023500 chr1B 14449652 14450264 612 False 606.000000 606 85.000000 818 1418 1 chr1B.!!$F1 600
12 TraesCS1A01G023500 chr1B 14542064 14542901 837 False 566.000000 566 79.433000 6146 6963 1 chr1B.!!$F2 817
13 TraesCS1A01G023500 chr1B 14634529 14635051 522 False 514.000000 514 84.733000 744 1257 1 chr1B.!!$F5 513
14 TraesCS1A01G023500 chr2A 25129379 25129931 552 False 272.000000 272 76.370000 2910 3479 1 chr2A.!!$F1 569
15 TraesCS1A01G023500 chr3D 231133211 231133745 534 False 243.000000 243 75.856000 2913 3444 1 chr3D.!!$F2 531

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
390 404 1.741401 CGATGTCAAAGGCTGGCGA 60.741 57.895 0.00 0.0 29.44 5.54 F
547 562 2.206536 CCATCCTCCTCTCGCTCCC 61.207 68.421 0.00 0.0 0.00 4.30 F
2064 3077 0.745845 ACCATTGCCATGAGACGAGC 60.746 55.000 0.00 0.0 31.07 5.03 F
2325 6420 1.455822 ACCAATTGGGGGTCTTGAGA 58.544 50.000 27.89 0.0 42.91 3.27 F
4003 8288 0.890996 ACTGGCTCAAGGAAAAGCGG 60.891 55.000 0.00 0.0 39.47 5.52 F
4044 8332 0.035317 TGCGGGTCCTATGATGATGC 59.965 55.000 0.00 0.0 0.00 3.91 F
4823 9126 0.111639 GGGAACAAGGGGCACAACTA 59.888 55.000 0.00 0.0 0.00 2.24 F
6064 10373 0.175760 GGACTGAGCGCCATGTAGAA 59.824 55.000 2.29 0.0 0.00 2.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1572 2582 0.608035 ACGCTGGTTACAATGTGGGG 60.608 55.0 0.00 0.00 0.00 4.96 R
2413 6508 0.169672 ATTCTCGTGACGTACCACCG 59.830 55.0 4.40 0.00 33.67 4.94 R
3203 7369 0.039437 TCTTGAGTCGGCGAACACTC 60.039 55.0 12.92 15.75 39.70 3.51 R
4026 8311 0.322975 AGCATCATCATAGGACCCGC 59.677 55.0 0.00 0.00 0.00 6.13 R
5611 9914 0.323451 TGTCGGCAGAGAGCTCCTTA 60.323 55.0 10.93 0.00 44.79 2.69 R
6014 10323 0.037303 ACTGTCAGGGGTGATGCAAG 59.963 55.0 4.53 0.00 0.00 4.01 R
6101 10410 0.036105 TGCATCCATGTGAGCTTCGT 60.036 50.0 0.00 0.00 0.00 3.85 R
7025 11374 0.111061 TCATCTTGCACAGCAGGGTT 59.889 50.0 1.24 0.00 40.61 4.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 3.079578 AGATCCTGCATGTGACAAGTTG 58.920 45.455 0.00 0.00 0.00 3.16
96 97 2.123409 GCCCAGAGCTGAGAGGTAG 58.877 63.158 0.00 0.00 38.99 3.18
100 112 3.817567 GCCCAGAGCTGAGAGGTAGATAT 60.818 52.174 0.00 0.00 38.99 1.63
110 122 7.039363 AGCTGAGAGGTAGATATGTGGTTAATC 60.039 40.741 0.00 0.00 0.00 1.75
310 324 7.233389 TGTTCTAGAGCAAAGAGTTCATACT 57.767 36.000 6.84 0.00 37.31 2.12
344 358 2.501723 AGACTGTTTGTGCCCGATCTAT 59.498 45.455 0.00 0.00 0.00 1.98
373 387 4.250464 TGTAGACAAAAGTGAATAGGCCG 58.750 43.478 0.00 0.00 0.00 6.13
389 403 2.753966 CCGATGTCAAAGGCTGGCG 61.754 63.158 0.00 0.00 29.44 5.69
390 404 1.741401 CGATGTCAAAGGCTGGCGA 60.741 57.895 0.00 0.00 29.44 5.54
459 473 6.730038 AGAGGACAAGCAAGAGATATATGGAT 59.270 38.462 0.00 0.00 0.00 3.41
547 562 2.206536 CCATCCTCCTCTCGCTCCC 61.207 68.421 0.00 0.00 0.00 4.30
627 642 3.882888 ACCATATTACCACCGCAGATTTG 59.117 43.478 0.00 0.00 0.00 2.32
655 670 4.559862 TCCTTCCTTGAACTTCTGATCC 57.440 45.455 0.00 0.00 0.00 3.36
695 710 4.717280 GGTATCCTTCTTCTCCTTCTTCCA 59.283 45.833 0.00 0.00 0.00 3.53
805 821 7.885399 AGAACTGTACTTTCTTATCTTGCCAAT 59.115 33.333 4.90 0.00 28.36 3.16
836 852 7.218228 TGTACAGTAAGTGTCGGATTTCTAA 57.782 36.000 0.00 0.00 40.94 2.10
1038 1115 2.955660 GGAAAAATGGCCCGATCATGTA 59.044 45.455 0.00 0.00 0.00 2.29
1178 1265 7.683437 ATTGTTAGAACTACCTTAAAGTGGC 57.317 36.000 0.00 0.00 0.00 5.01
1239 1386 7.978414 AGTAAATCTATATCTGACATGATGCCG 59.022 37.037 0.00 0.00 0.00 5.69
1360 1517 7.500141 ACCTGCAACAAAAGTTGATAGAAATT 58.500 30.769 12.12 0.00 36.50 1.82
1430 1587 6.866347 GCATTTGATTATGCGGTGTATTTTC 58.134 36.000 0.00 0.00 41.24 2.29
1511 1670 8.770753 ACTGCAACAAAACAGTTCATCCACTG 62.771 42.308 0.00 0.00 44.59 3.66
1521 2531 3.771479 AGTTCATCCACTGTAGAGCATCA 59.229 43.478 0.00 0.00 37.82 3.07
1572 2582 1.230324 GCACTCCAACTCACTGGTTC 58.770 55.000 0.00 0.00 37.74 3.62
1588 2598 2.167662 GGTTCCCCACATTGTAACCAG 58.832 52.381 12.35 0.00 39.51 4.00
1613 2623 8.079203 AGCGTTGTATTATGTCTCAAGAGATAG 58.921 37.037 2.72 0.00 39.97 2.08
1618 2628 8.851145 TGTATTATGTCTCAAGAGATAGTCCAC 58.149 37.037 2.72 0.21 39.97 4.02
1621 2631 6.865834 ATGTCTCAAGAGATAGTCCACTTT 57.134 37.500 2.72 0.00 39.97 2.66
1690 2700 7.881775 AGGTAAAATCATGTTTAGTGATCCC 57.118 36.000 0.00 0.00 35.35 3.85
1697 2707 6.575244 TCATGTTTAGTGATCCCTGGTAAT 57.425 37.500 0.00 0.00 0.00 1.89
1727 2738 6.623986 GCATAACCATACGACCAAACAAATCA 60.624 38.462 0.00 0.00 0.00 2.57
1739 2750 7.266922 ACCAAACAAATCACGTACAAATACT 57.733 32.000 0.00 0.00 0.00 2.12
1789 2800 3.576356 CCATAGCTGGCGCCAACG 61.576 66.667 32.09 21.20 44.07 4.10
1864 2875 2.557056 CGGCGAGATGGAATACTTAGGA 59.443 50.000 0.00 0.00 0.00 2.94
1887 2898 1.278127 CCTCGGTCAAGGGTTACACAT 59.722 52.381 0.00 0.00 32.35 3.21
1902 2913 3.526931 ACACATCCACCTCATCTTACG 57.473 47.619 0.00 0.00 0.00 3.18
1949 2960 1.952621 ACTACTTCCAGCCAGGCTTA 58.047 50.000 12.86 0.00 36.40 3.09
2037 3050 3.109619 GGAGAATCAACTCGCTAGTTCG 58.890 50.000 0.00 0.00 44.28 3.95
2063 3076 1.293924 GACCATTGCCATGAGACGAG 58.706 55.000 0.00 0.00 31.07 4.18
2064 3077 0.745845 ACCATTGCCATGAGACGAGC 60.746 55.000 0.00 0.00 31.07 5.03
2150 3163 2.978010 CGGAAAGCGCAAGGGTGT 60.978 61.111 11.47 0.00 38.28 4.16
2156 3169 4.043200 GCGCAAGGGTGTTGAGGC 62.043 66.667 0.30 0.00 38.28 4.70
2200 3213 4.101790 GGCGATGTGTGGCAACGG 62.102 66.667 0.00 0.00 42.52 4.44
2202 3215 3.430862 CGATGTGTGGCAACGGGG 61.431 66.667 0.00 0.00 39.30 5.73
2272 6367 5.571784 TGGCAATCAGAGAATGTTGATTC 57.428 39.130 0.00 0.00 40.93 2.52
2276 6371 5.589452 GCAATCAGAGAATGTTGATTCCTCT 59.411 40.000 0.00 0.00 40.93 3.69
2292 6387 3.218453 TCCTCTTCTTATGCCGAGAGAG 58.782 50.000 0.00 0.00 38.27 3.20
2293 6388 3.117851 TCCTCTTCTTATGCCGAGAGAGA 60.118 47.826 0.00 0.00 38.27 3.10
2294 6389 3.004315 CCTCTTCTTATGCCGAGAGAGAC 59.996 52.174 0.00 0.00 38.27 3.36
2295 6390 3.621558 TCTTCTTATGCCGAGAGAGACA 58.378 45.455 0.00 0.00 0.00 3.41
2325 6420 1.455822 ACCAATTGGGGGTCTTGAGA 58.544 50.000 27.89 0.00 42.91 3.27
2329 6424 3.019564 CAATTGGGGGTCTTGAGACATC 58.980 50.000 12.76 4.72 46.47 3.06
2350 6445 2.011947 GTTATTGGGTTAGGGTCGTGC 58.988 52.381 0.00 0.00 0.00 5.34
2357 6452 2.355412 GGGTTAGGGTCGTGCAGTATTT 60.355 50.000 0.00 0.00 0.00 1.40
2382 6477 3.047877 GCTACGCACGGGCACTTT 61.048 61.111 11.77 0.00 41.24 2.66
2402 6497 9.736023 GCACTTTTGCTAGTAATAATAAAGCAT 57.264 29.630 0.00 0.00 46.17 3.79
2428 6523 2.281414 TCCGGTGGTACGTCACGA 60.281 61.111 2.91 0.00 38.46 4.35
2429 6524 2.177531 CCGGTGGTACGTCACGAG 59.822 66.667 2.91 0.00 38.46 4.18
2444 6539 2.154462 CACGAGAATTGCCCTCAAAGT 58.846 47.619 0.00 0.00 35.56 2.66
2457 6552 6.162777 TGCCCTCAAAGTTGCAAAATATTAC 58.837 36.000 0.00 0.00 0.00 1.89
2467 6562 6.013812 AGTTGCAAAATATTACCCACCAATGT 60.014 34.615 0.00 0.00 0.00 2.71
2474 6569 8.691661 AAATATTACCCACCAATGTCATCTAC 57.308 34.615 0.00 0.00 0.00 2.59
2475 6570 5.975988 ATTACCCACCAATGTCATCTACT 57.024 39.130 0.00 0.00 0.00 2.57
2476 6571 3.914426 ACCCACCAATGTCATCTACTC 57.086 47.619 0.00 0.00 0.00 2.59
2477 6572 2.505819 ACCCACCAATGTCATCTACTCC 59.494 50.000 0.00 0.00 0.00 3.85
2478 6573 2.158755 CCCACCAATGTCATCTACTCCC 60.159 54.545 0.00 0.00 0.00 4.30
2479 6574 2.158755 CCACCAATGTCATCTACTCCCC 60.159 54.545 0.00 0.00 0.00 4.81
2480 6575 2.127708 ACCAATGTCATCTACTCCCCC 58.872 52.381 0.00 0.00 0.00 5.40
2502 6597 8.107399 CCCCCGTTCCTAAATATTTATCTTTC 57.893 38.462 8.34 0.00 0.00 2.62
2503 6598 7.942894 CCCCCGTTCCTAAATATTTATCTTTCT 59.057 37.037 8.34 0.00 0.00 2.52
2522 6617 8.594881 TCTTTCTAGAGATTTCAACAAGTGAC 57.405 34.615 0.00 0.00 35.39 3.67
2523 6618 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
2524 6619 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
2525 6620 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
2526 6621 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
2527 6622 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
2529 6624 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
2530 6625 8.367911 AGAGATTTCAACAAGTGACTACATACA 58.632 33.333 0.00 0.00 35.39 2.29
2531 6626 8.902540 AGATTTCAACAAGTGACTACATACAA 57.097 30.769 0.00 0.00 35.39 2.41
2532 6627 9.337396 AGATTTCAACAAGTGACTACATACAAA 57.663 29.630 0.00 0.00 35.39 2.83
2533 6628 9.599322 GATTTCAACAAGTGACTACATACAAAG 57.401 33.333 0.00 0.00 35.39 2.77
2534 6629 6.539649 TCAACAAGTGACTACATACAAAGC 57.460 37.500 0.00 0.00 0.00 3.51
2535 6630 6.052360 TCAACAAGTGACTACATACAAAGCA 58.948 36.000 0.00 0.00 0.00 3.91
2536 6631 6.540551 TCAACAAGTGACTACATACAAAGCAA 59.459 34.615 0.00 0.00 0.00 3.91
2537 6632 6.935741 ACAAGTGACTACATACAAAGCAAA 57.064 33.333 0.00 0.00 0.00 3.68
2538 6633 7.328277 ACAAGTGACTACATACAAAGCAAAA 57.672 32.000 0.00 0.00 0.00 2.44
2539 6634 7.940850 ACAAGTGACTACATACAAAGCAAAAT 58.059 30.769 0.00 0.00 0.00 1.82
2540 6635 7.862372 ACAAGTGACTACATACAAAGCAAAATG 59.138 33.333 0.00 0.00 0.00 2.32
2541 6636 7.744087 AGTGACTACATACAAAGCAAAATGA 57.256 32.000 0.00 0.00 0.00 2.57
2542 6637 7.810658 AGTGACTACATACAAAGCAAAATGAG 58.189 34.615 0.00 0.00 0.00 2.90
2543 6638 7.445402 AGTGACTACATACAAAGCAAAATGAGT 59.555 33.333 0.00 0.00 0.00 3.41
2544 6639 7.535258 GTGACTACATACAAAGCAAAATGAGTG 59.465 37.037 0.00 0.00 0.00 3.51
2545 6640 7.443879 TGACTACATACAAAGCAAAATGAGTGA 59.556 33.333 0.00 0.00 0.00 3.41
2546 6641 8.165239 ACTACATACAAAGCAAAATGAGTGAA 57.835 30.769 0.00 0.00 0.00 3.18
2547 6642 8.796475 ACTACATACAAAGCAAAATGAGTGAAT 58.204 29.630 0.00 0.00 0.00 2.57
2548 6643 9.282247 CTACATACAAAGCAAAATGAGTGAATC 57.718 33.333 0.00 0.00 0.00 2.52
2549 6644 7.889469 ACATACAAAGCAAAATGAGTGAATCT 58.111 30.769 0.00 0.00 0.00 2.40
2550 6645 9.013229 ACATACAAAGCAAAATGAGTGAATCTA 57.987 29.630 0.00 0.00 0.00 1.98
2551 6646 9.282247 CATACAAAGCAAAATGAGTGAATCTAC 57.718 33.333 0.00 0.00 0.00 2.59
2552 6647 7.275888 ACAAAGCAAAATGAGTGAATCTACA 57.724 32.000 0.00 0.00 0.00 2.74
2553 6648 7.141363 ACAAAGCAAAATGAGTGAATCTACAC 58.859 34.615 0.00 0.00 40.60 2.90
2586 6681 7.956328 ATGTCTATATACATCCGTATGTGGT 57.044 36.000 3.56 0.00 45.99 4.16
2588 6683 8.866970 TGTCTATATACATCCGTATGTGGTAA 57.133 34.615 3.56 0.00 45.99 2.85
2589 6684 9.470399 TGTCTATATACATCCGTATGTGGTAAT 57.530 33.333 3.56 0.00 45.99 1.89
2590 6685 9.947669 GTCTATATACATCCGTATGTGGTAATC 57.052 37.037 3.56 0.00 45.99 1.75
2591 6686 9.689501 TCTATATACATCCGTATGTGGTAATCA 57.310 33.333 3.56 0.00 45.99 2.57
2595 6690 6.618287 ACATCCGTATGTGGTAATCATTTG 57.382 37.500 0.00 0.00 44.79 2.32
2596 6691 6.353323 ACATCCGTATGTGGTAATCATTTGA 58.647 36.000 0.00 0.00 44.79 2.69
2597 6692 6.826231 ACATCCGTATGTGGTAATCATTTGAA 59.174 34.615 0.00 0.00 44.79 2.69
2598 6693 7.338196 ACATCCGTATGTGGTAATCATTTGAAA 59.662 33.333 0.00 0.00 44.79 2.69
2599 6694 7.873719 TCCGTATGTGGTAATCATTTGAAAT 57.126 32.000 0.00 0.00 0.00 2.17
2600 6695 7.925993 TCCGTATGTGGTAATCATTTGAAATC 58.074 34.615 0.00 0.00 0.00 2.17
2601 6696 7.773224 TCCGTATGTGGTAATCATTTGAAATCT 59.227 33.333 0.00 0.00 0.00 2.40
2602 6697 8.070171 CCGTATGTGGTAATCATTTGAAATCTC 58.930 37.037 0.00 0.00 0.00 2.75
2603 6698 8.830580 CGTATGTGGTAATCATTTGAAATCTCT 58.169 33.333 0.00 0.00 0.00 3.10
2607 6702 9.958180 TGTGGTAATCATTTGAAATCTCTAGAA 57.042 29.630 0.00 0.00 0.00 2.10
2627 6722 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
2628 6723 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
2629 6724 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
2630 6725 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
2631 6726 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
2632 6727 4.788679 ACAAATATTTAGGAACGGAGGGG 58.211 43.478 0.00 0.00 0.00 4.79
2633 6728 4.228895 ACAAATATTTAGGAACGGAGGGGT 59.771 41.667 0.00 0.00 0.00 4.95
2634 6729 5.429435 ACAAATATTTAGGAACGGAGGGGTA 59.571 40.000 0.00 0.00 0.00 3.69
2635 6730 5.820404 AATATTTAGGAACGGAGGGGTAG 57.180 43.478 0.00 0.00 0.00 3.18
2636 6731 2.629017 TTTAGGAACGGAGGGGTAGT 57.371 50.000 0.00 0.00 0.00 2.73
2650 6745 4.368067 AGGGGTAGTAGTGATAAAAGCCA 58.632 43.478 0.00 0.00 0.00 4.75
2657 6752 7.335924 GGTAGTAGTGATAAAAGCCATTTCACA 59.664 37.037 4.42 0.00 31.47 3.58
2679 6774 2.124695 GGAATCCCGTGCCTGGAC 60.125 66.667 0.00 0.00 33.94 4.02
3100 7266 5.270893 TCAAAAATGATCATGCCATCCAG 57.729 39.130 9.46 0.00 0.00 3.86
3119 7285 9.880157 CCATCCAGAAAATGTTCTTTGAATAAT 57.120 29.630 0.00 0.00 41.55 1.28
3192 7358 4.376146 ACCAATTTCCCAAACAATGTTCG 58.624 39.130 0.00 0.00 0.00 3.95
3203 7369 5.391950 CCAAACAATGTTCGTCCATTCTAGG 60.392 44.000 0.00 0.00 32.81 3.02
3439 7661 9.145442 TCATGGCCATTGAAGATTATGATTTTA 57.855 29.630 17.92 0.00 0.00 1.52
3457 7685 7.725251 TGATTTTATTTTTCTCCTGTTGCACT 58.275 30.769 0.00 0.00 0.00 4.40
3460 7688 8.458573 TTTTATTTTTCTCCTGTTGCACTAGA 57.541 30.769 0.00 0.00 0.00 2.43
3528 7756 7.931275 TGGTTATATTATTTGTACGCATGCAA 58.069 30.769 19.57 3.96 0.00 4.08
3558 7787 9.224058 GTAGTTTACAAGTTCGATATGAGAGAC 57.776 37.037 0.00 0.00 0.00 3.36
3565 7794 4.098654 AGTTCGATATGAGAGACTGGTTGG 59.901 45.833 0.00 0.00 0.00 3.77
3579 7809 3.327757 ACTGGTTGGAGTAATCAAGCTGA 59.672 43.478 15.76 0.00 41.07 4.26
3582 7812 3.557595 GGTTGGAGTAATCAAGCTGATCG 59.442 47.826 0.00 0.00 35.76 3.69
3592 7850 3.685592 GCTGATCGAGCGTGACAG 58.314 61.111 0.00 0.00 38.15 3.51
3642 7900 7.759489 AGCTGTTGACCATTTTGATTAGTAA 57.241 32.000 0.00 0.00 0.00 2.24
3643 7901 7.593825 AGCTGTTGACCATTTTGATTAGTAAC 58.406 34.615 0.00 0.00 0.00 2.50
3644 7902 6.523201 GCTGTTGACCATTTTGATTAGTAACG 59.477 38.462 0.00 0.00 0.00 3.18
3646 7904 8.604640 TGTTGACCATTTTGATTAGTAACGTA 57.395 30.769 0.00 0.00 0.00 3.57
3647 7905 9.053840 TGTTGACCATTTTGATTAGTAACGTAA 57.946 29.630 0.00 0.00 0.00 3.18
3730 8009 2.684881 GGAGGCATACATTGTCTTGGTG 59.315 50.000 0.00 0.00 41.47 4.17
3731 8010 3.347216 GAGGCATACATTGTCTTGGTGT 58.653 45.455 0.00 0.00 41.47 4.16
3738 8017 6.677920 GCATACATTGTCTTGGTGTATCAACC 60.678 42.308 0.00 0.00 37.04 3.77
3745 8024 5.221481 TGTCTTGGTGTATCAACCGTTCTTA 60.221 40.000 0.00 0.00 43.73 2.10
3750 8029 4.179298 GTGTATCAACCGTTCTTAGGTCC 58.821 47.826 0.00 0.00 41.95 4.46
3752 8031 4.283978 TGTATCAACCGTTCTTAGGTCCAA 59.716 41.667 0.00 0.00 41.95 3.53
3757 8036 4.094830 ACCGTTCTTAGGTCCAAATGTT 57.905 40.909 0.00 0.00 37.44 2.71
3772 8051 4.846509 CAAATGTTTGTTGGAATGTTGGC 58.153 39.130 0.00 0.00 33.59 4.52
3821 8100 4.927782 TGTCAGGCGTGGGTGTGC 62.928 66.667 6.56 0.00 0.00 4.57
3841 8120 4.339247 GTGCAGCAAATCCATAAGTACCAT 59.661 41.667 0.00 0.00 0.00 3.55
3977 8262 2.281484 TTGGCCTGCTCGACCAAC 60.281 61.111 3.32 0.00 38.52 3.77
3978 8263 4.680237 TGGCCTGCTCGACCAACG 62.680 66.667 3.32 0.00 44.09 4.10
4002 8287 0.954452 AACTGGCTCAAGGAAAAGCG 59.046 50.000 0.00 0.00 39.47 4.68
4003 8288 0.890996 ACTGGCTCAAGGAAAAGCGG 60.891 55.000 0.00 0.00 39.47 5.52
4026 8311 4.036971 GGATGAGCTACAGTACTACACCTG 59.963 50.000 0.00 0.00 0.00 4.00
4044 8332 0.035317 TGCGGGTCCTATGATGATGC 59.965 55.000 0.00 0.00 0.00 3.91
4051 8339 3.196685 GGTCCTATGATGATGCTACCTCC 59.803 52.174 0.00 0.00 0.00 4.30
4081 8369 2.663520 TGGCACGTGCGGTACAAG 60.664 61.111 32.35 0.00 43.26 3.16
4147 8435 1.902508 CTAGTGGCTGAGAACCTCCAA 59.097 52.381 0.00 0.00 0.00 3.53
4148 8436 0.689623 AGTGGCTGAGAACCTCCAAG 59.310 55.000 0.00 0.00 0.00 3.61
4353 8650 3.615224 TCAATCAGCAGAGCACATACA 57.385 42.857 0.00 0.00 0.00 2.29
4355 8652 1.931906 ATCAGCAGAGCACATACACG 58.068 50.000 0.00 0.00 0.00 4.49
4357 8654 0.390340 CAGCAGAGCACATACACGGT 60.390 55.000 0.00 0.00 0.00 4.83
4358 8655 0.390340 AGCAGAGCACATACACGGTG 60.390 55.000 6.58 6.58 39.25 4.94
4370 8667 2.663520 ACGGTGCGATGCGTCAAA 60.664 55.556 6.75 0.00 0.00 2.69
4557 8860 1.682854 CAGCACCATCAACACCAAGTT 59.317 47.619 0.00 0.00 42.42 2.66
4574 8877 6.585702 CACCAAGTTTTCAAATATGCATCGAA 59.414 34.615 0.19 0.00 0.00 3.71
4603 8906 2.486191 GGTCATCCTCGAAGCATTCCAT 60.486 50.000 0.00 0.00 43.81 3.41
4627 8930 1.897560 ACTCTTTGTTGCAGCTACCC 58.102 50.000 4.43 0.00 0.00 3.69
4735 9038 6.870439 TCACAGTTGATGAACTACTTGATGAG 59.130 38.462 0.00 0.00 40.68 2.90
4760 9063 4.706476 AGAAGAAATGGATTTCATTCGCCA 59.294 37.500 13.30 0.00 46.50 5.69
4794 9097 1.942657 CCATGTAAGCCGAGAATGGTG 59.057 52.381 0.00 0.00 34.35 4.17
4823 9126 0.111639 GGGAACAAGGGGCACAACTA 59.888 55.000 0.00 0.00 0.00 2.24
4873 9176 6.475504 TCAATCACTCATTCTTTCCAAGCTA 58.524 36.000 0.00 0.00 0.00 3.32
4918 9221 8.915871 TTTGTTTTCTTCTTGTTCTTGATCTG 57.084 30.769 0.00 0.00 0.00 2.90
5019 9322 5.047802 GCCATGATCTGAAAACTCTTTCCAA 60.048 40.000 0.00 0.00 40.31 3.53
5191 9494 7.084486 TGATTTATCTCGACATGTCCTATTCG 58.916 38.462 20.03 8.11 0.00 3.34
5257 9560 6.753913 AATCTGGAGGAGCTTATTATGACA 57.246 37.500 0.00 0.00 0.00 3.58
5373 9676 5.943416 TCCCGCAGAAGATATTTGAAGAAAA 59.057 36.000 0.00 0.00 0.00 2.29
5374 9677 6.603201 TCCCGCAGAAGATATTTGAAGAAAAT 59.397 34.615 0.00 0.00 41.47 1.82
5375 9678 7.773224 TCCCGCAGAAGATATTTGAAGAAAATA 59.227 33.333 0.00 0.00 43.28 1.40
5388 9691 6.349973 TGAAGAAAATATGCAGAAGCTACG 57.650 37.500 0.00 0.00 42.74 3.51
5392 9695 4.408182 AAATATGCAGAAGCTACGGTCT 57.592 40.909 0.00 0.00 42.74 3.85
5574 9877 6.446318 AGTCTATCGAGATCAAGAATCTTGC 58.554 40.000 17.58 5.41 45.06 4.01
5588 9891 1.378250 CTTGCTGCCTTGGAGGAGG 60.378 63.158 0.00 0.00 37.67 4.30
5611 9914 4.481368 TGATTTGTCCGGTACAGCTATT 57.519 40.909 0.00 0.00 39.87 1.73
5684 9987 1.603739 GTGGGTGTTCCTTCCCTGC 60.604 63.158 0.00 0.00 43.74 4.85
5744 10047 7.029563 GGATGTGTTTTACTTGGATCATTGTC 58.970 38.462 0.00 0.00 0.00 3.18
5831 10134 3.262420 CATAGCTTCCGTAACACTGCTT 58.738 45.455 0.00 0.00 32.72 3.91
5838 10141 4.742438 TCCGTAACACTGCTTTGAATTC 57.258 40.909 0.00 0.00 0.00 2.17
5896 10199 1.094785 AAGTCGCACCATGCATTACC 58.905 50.000 0.00 0.00 45.36 2.85
5902 10205 2.877786 CGCACCATGCATTACCAATAGA 59.122 45.455 0.00 0.00 45.36 1.98
5909 10218 5.508489 CCATGCATTACCAATAGAAGGCAAG 60.508 44.000 0.00 0.00 44.48 4.01
5911 10220 5.750524 TGCATTACCAATAGAAGGCAAGTA 58.249 37.500 0.00 0.00 39.20 2.24
5985 10294 8.985315 AATCAGTCAACATATGTGGATGTATT 57.015 30.769 16.03 12.04 39.16 1.89
6002 10311 7.147932 TGGATGTATTTAGCAGCTATTTTGCAA 60.148 33.333 2.02 0.00 43.92 4.08
6028 10337 3.281240 GCACTTGCATCACCCCTG 58.719 61.111 0.00 0.00 41.59 4.45
6037 10346 0.987294 CATCACCCCTGACAGTTCCT 59.013 55.000 0.93 0.00 0.00 3.36
6064 10373 0.175760 GGACTGAGCGCCATGTAGAA 59.824 55.000 2.29 0.00 0.00 2.10
6065 10374 1.202580 GGACTGAGCGCCATGTAGAAT 60.203 52.381 2.29 0.00 0.00 2.40
6066 10375 2.035961 GGACTGAGCGCCATGTAGAATA 59.964 50.000 2.29 0.00 0.00 1.75
6067 10376 3.306364 GGACTGAGCGCCATGTAGAATAT 60.306 47.826 2.29 0.00 0.00 1.28
6068 10377 4.082190 GGACTGAGCGCCATGTAGAATATA 60.082 45.833 2.29 0.00 0.00 0.86
6069 10378 5.394663 GGACTGAGCGCCATGTAGAATATAT 60.395 44.000 2.29 0.00 0.00 0.86
6070 10379 5.414360 ACTGAGCGCCATGTAGAATATATG 58.586 41.667 2.29 0.00 39.56 1.78
6071 10380 5.047021 ACTGAGCGCCATGTAGAATATATGT 60.047 40.000 2.29 0.00 38.36 2.29
6072 10381 5.410924 TGAGCGCCATGTAGAATATATGTC 58.589 41.667 2.29 0.00 38.36 3.06
6073 10382 5.047377 TGAGCGCCATGTAGAATATATGTCA 60.047 40.000 2.29 0.00 38.36 3.58
6074 10383 5.171476 AGCGCCATGTAGAATATATGTCAC 58.829 41.667 2.29 0.00 38.36 3.67
6075 10384 5.047021 AGCGCCATGTAGAATATATGTCACT 60.047 40.000 2.29 0.00 38.36 3.41
6076 10385 5.062683 GCGCCATGTAGAATATATGTCACTG 59.937 44.000 0.00 0.00 38.36 3.66
6077 10386 6.159293 CGCCATGTAGAATATATGTCACTGT 58.841 40.000 0.00 0.00 38.36 3.55
6078 10387 6.309009 CGCCATGTAGAATATATGTCACTGTC 59.691 42.308 0.00 0.00 38.36 3.51
6079 10388 7.154656 GCCATGTAGAATATATGTCACTGTCA 58.845 38.462 0.00 0.00 38.36 3.58
6080 10389 7.116948 GCCATGTAGAATATATGTCACTGTCAC 59.883 40.741 0.00 0.00 38.36 3.67
6081 10390 8.363390 CCATGTAGAATATATGTCACTGTCACT 58.637 37.037 0.00 0.00 38.36 3.41
6082 10391 9.189723 CATGTAGAATATATGTCACTGTCACTG 57.810 37.037 0.00 0.00 35.71 3.66
6083 10392 8.519799 TGTAGAATATATGTCACTGTCACTGA 57.480 34.615 0.00 0.00 0.00 3.41
6084 10393 8.406297 TGTAGAATATATGTCACTGTCACTGAC 58.594 37.037 1.86 1.86 38.86 3.51
6089 10398 3.541996 TGTCACTGTCACTGACAACAT 57.458 42.857 12.92 0.00 43.99 2.71
6090 10399 4.664150 TGTCACTGTCACTGACAACATA 57.336 40.909 12.92 0.00 43.99 2.29
6091 10400 5.213891 TGTCACTGTCACTGACAACATAT 57.786 39.130 12.92 0.00 43.99 1.78
6092 10401 6.339587 TGTCACTGTCACTGACAACATATA 57.660 37.500 12.92 0.00 43.99 0.86
6093 10402 6.935167 TGTCACTGTCACTGACAACATATAT 58.065 36.000 12.92 0.00 43.99 0.86
6094 10403 6.813152 TGTCACTGTCACTGACAACATATATG 59.187 38.462 12.92 11.29 43.99 1.78
6095 10404 6.256539 GTCACTGTCACTGACAACATATATGG 59.743 42.308 16.96 2.79 42.26 2.74
6096 10405 5.007039 CACTGTCACTGACAACATATATGGC 59.993 44.000 16.96 4.33 42.26 4.40
6097 10406 5.096443 TGTCACTGACAACATATATGGCA 57.904 39.130 16.96 8.27 39.78 4.92
6098 10407 4.875536 TGTCACTGACAACATATATGGCAC 59.124 41.667 16.96 6.18 39.78 5.01
6099 10408 4.875536 GTCACTGACAACATATATGGCACA 59.124 41.667 16.96 9.88 35.86 4.57
6100 10409 5.353956 GTCACTGACAACATATATGGCACAA 59.646 40.000 16.96 0.00 35.25 3.33
6101 10410 6.128035 GTCACTGACAACATATATGGCACAAA 60.128 38.462 16.96 0.00 35.25 2.83
6102 10411 8.097423 GTCACTGACAACATATATGGCACAAAC 61.097 40.741 16.96 6.61 35.25 2.93
6131 10440 4.080975 TCACATGGATGCAAGAGACACATA 60.081 41.667 0.00 0.00 0.00 2.29
6133 10442 2.892374 TGGATGCAAGAGACACATACG 58.108 47.619 0.00 0.00 0.00 3.06
6140 10449 3.617263 GCAAGAGACACATACGGGTTTAG 59.383 47.826 0.00 0.00 0.00 1.85
6321 10630 4.984785 ACTACGCAATATGCATGTCTGTAG 59.015 41.667 10.16 16.29 45.36 2.74
6351 10660 2.479275 GGCTAGTTTCGTTCTGTTCACC 59.521 50.000 0.00 0.00 0.00 4.02
6574 10884 2.033757 CAGGAGCTGCCACTGCTT 59.966 61.111 0.00 0.00 38.70 3.91
6780 11090 2.758852 TACGACCCCAAGCTTCCCCT 62.759 60.000 0.00 0.00 0.00 4.79
6819 11129 0.527385 GAGTCTGCCGAGATGAGCAC 60.527 60.000 0.00 0.00 34.68 4.40
6826 11136 1.115467 CCGAGATGAGCACCTACCTT 58.885 55.000 0.00 0.00 0.00 3.50
6875 11204 8.977412 TCTATCAGTTGGTATGTGATTTACTCA 58.023 33.333 0.00 0.00 33.05 3.41
6880 11209 6.540189 AGTTGGTATGTGATTTACTCAGCATC 59.460 38.462 0.00 0.00 33.51 3.91
6965 11314 1.079681 GTTCCACCATACGTCCGCA 60.080 57.895 0.00 0.00 0.00 5.69
6980 11329 2.051882 GCATCAGCGCCGCATTAC 60.052 61.111 13.36 0.00 0.00 1.89
7034 11383 6.524734 TGTATATATCAGAACAACCCTGCTG 58.475 40.000 0.00 0.00 0.00 4.41
7111 11486 1.891150 GTTGAAGGACCTCCACGTCTA 59.109 52.381 0.00 0.00 38.89 2.59
7138 11520 1.834822 GGAGCCTACGATGCCTCCT 60.835 63.158 0.00 0.00 0.00 3.69
7174 11558 1.771854 ACAGTGTTCCACCATACACCA 59.228 47.619 0.00 0.00 44.38 4.17
7175 11559 2.375174 ACAGTGTTCCACCATACACCAT 59.625 45.455 0.00 0.00 44.38 3.55
7181 11565 4.081142 TGTTCCACCATACACCATAGAGTG 60.081 45.833 0.00 0.00 43.65 3.51
7290 11720 1.290130 ACCCCTTCCTCCGTATACACT 59.710 52.381 3.32 0.00 0.00 3.55
7312 11742 6.652062 CACTTGCATGCCATCTATATGAGTTA 59.348 38.462 16.68 0.00 34.84 2.24
7314 11744 7.886970 ACTTGCATGCCATCTATATGAGTTAAT 59.113 33.333 16.68 0.00 34.84 1.40
7315 11745 8.640063 TTGCATGCCATCTATATGAGTTAATT 57.360 30.769 16.68 0.00 34.84 1.40
7316 11746 8.640063 TGCATGCCATCTATATGAGTTAATTT 57.360 30.769 16.68 0.00 34.84 1.82
7317 11747 9.737844 TGCATGCCATCTATATGAGTTAATTTA 57.262 29.630 16.68 0.00 34.84 1.40
7386 11817 2.504367 CACTTTGTCTCCCGTGGAATT 58.496 47.619 0.00 0.00 0.00 2.17
7394 11825 4.081309 TGTCTCCCGTGGAATTAGGTTTAG 60.081 45.833 0.00 0.00 0.00 1.85
7410 11841 6.860790 AGGTTTAGTTTTCCTTGTTCCAAA 57.139 33.333 0.00 0.00 0.00 3.28
7516 11959 2.972713 TGTCTCTGGACTTTAAGTGGCT 59.027 45.455 0.93 0.00 42.54 4.75
7528 11971 8.398665 GGACTTTAAGTGGCTTGTATATTTCTG 58.601 37.037 0.93 0.00 0.00 3.02
7548 11991 6.671614 TCTGTATTTCAGACGTTGTGTTTT 57.328 33.333 0.00 0.00 46.77 2.43
7646 12146 9.400208 TGTGGGTATTCTATATTTCTTATGGGA 57.600 33.333 0.00 0.00 0.00 4.37
7682 12182 8.962884 AAAAGGCACTGAGATTTGTTAAAAAT 57.037 26.923 0.00 0.00 40.86 1.82
7783 12284 7.013464 ACGACAAACATTTATCCCAGTTTTACA 59.987 33.333 0.00 0.00 32.34 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 1.954382 AGAAGCTTTGAAACCGGGAAC 59.046 47.619 6.32 0.00 0.00 3.62
310 324 5.698089 CACAAACAGTCTGAGATAAGAGCAA 59.302 40.000 6.91 0.00 0.00 3.91
344 358 9.653287 CCTATTCACTTTTGTCTACAGAACATA 57.347 33.333 0.00 0.00 0.00 2.29
373 387 1.098050 AATCGCCAGCCTTTGACATC 58.902 50.000 0.00 0.00 0.00 3.06
423 437 6.998074 TCTTGCTTGTCCTCTAAATTTCTTCA 59.002 34.615 0.00 0.00 0.00 3.02
488 502 2.028763 CGAATGTCGGTCGGTAATGTTG 59.971 50.000 0.00 0.00 36.00 3.33
489 503 2.264813 CGAATGTCGGTCGGTAATGTT 58.735 47.619 0.00 0.00 36.00 2.71
497 511 1.561717 TTTGGCACGAATGTCGGTCG 61.562 55.000 2.38 0.00 45.59 4.79
501 515 3.370978 AGTTCTATTTGGCACGAATGTCG 59.629 43.478 0.00 0.00 46.93 4.35
547 562 3.578716 TCTGGGTGAGGAGTCTTTTACTG 59.421 47.826 0.00 0.00 39.07 2.74
682 697 1.814429 TGGTGGTGGAAGAAGGAGAA 58.186 50.000 0.00 0.00 0.00 2.87
683 698 2.044793 ATGGTGGTGGAAGAAGGAGA 57.955 50.000 0.00 0.00 0.00 3.71
805 821 4.500205 CCGACACTTACTGTACAAGGAACA 60.500 45.833 0.00 0.00 31.03 3.18
836 852 7.558444 GCATAAGCTGGATAGTACTCCTACTAT 59.442 40.741 0.00 0.88 41.57 2.12
935 1012 5.796424 ATTGACCTGCAAGAAAAAGATGT 57.204 34.783 0.00 0.00 40.42 3.06
1038 1115 1.140052 TCATCACGCCATTTATCCCGT 59.860 47.619 0.00 0.00 0.00 5.28
1236 1381 2.335316 TATGTGTTTGGGGATACGGC 57.665 50.000 0.00 0.00 37.60 5.68
1239 1386 6.270231 AGAGGACTATATGTGTTTGGGGATAC 59.730 42.308 0.00 0.00 0.00 2.24
1360 1517 4.126437 CACCGGCATGTTAGTTCATATCA 58.874 43.478 0.00 0.00 0.00 2.15
1511 1670 3.119291 CGAACCAGACATGATGCTCTAC 58.881 50.000 0.00 0.00 0.00 2.59
1572 2582 0.608035 ACGCTGGTTACAATGTGGGG 60.608 55.000 0.00 0.00 0.00 4.96
1588 2598 7.863375 ACTATCTCTTGAGACATAATACAACGC 59.137 37.037 2.11 0.00 0.00 4.84
1613 2623 3.369576 CCCTACTCCTGCTTAAAGTGGAC 60.370 52.174 0.00 0.00 0.00 4.02
1618 2628 4.965200 ATAGCCCTACTCCTGCTTAAAG 57.035 45.455 0.00 0.00 36.57 1.85
1621 2631 4.158015 GGTAATAGCCCTACTCCTGCTTA 58.842 47.826 0.00 0.00 36.57 3.09
1690 2700 3.469008 TGGTTATGCTCGGATTACCAG 57.531 47.619 5.37 0.00 31.58 4.00
1697 2707 1.338973 GGTCGTATGGTTATGCTCGGA 59.661 52.381 0.00 0.00 0.00 4.55
1739 2750 2.956132 CCCATGCCCATAAATGGTACA 58.044 47.619 8.16 6.37 46.65 2.90
1789 2800 1.303317 ATGTTGCGAAGTCCCCACC 60.303 57.895 0.00 0.00 0.00 4.61
1842 2853 2.557056 CCTAAGTATTCCATCTCGCCGA 59.443 50.000 0.00 0.00 0.00 5.54
1864 2875 1.770061 TGTAACCCTTGACCGAGGTTT 59.230 47.619 0.00 0.00 41.07 3.27
1887 2898 0.681887 TCGGCGTAAGATGAGGTGGA 60.682 55.000 6.85 0.00 43.02 4.02
1902 2913 1.081108 CCTAGCTCGCATACTCGGC 60.081 63.158 0.00 0.00 0.00 5.54
1913 2924 7.764695 GAAGTAGTTTTCATCTTCCTAGCTC 57.235 40.000 0.00 0.00 32.73 4.09
2037 3050 0.732571 CATGGCAATGGTCGGTGTAC 59.267 55.000 0.00 0.00 0.00 2.90
2063 3076 0.810031 ATGGTGATAGCCAACGTCGC 60.810 55.000 0.00 0.00 42.48 5.19
2064 3077 1.327460 CAATGGTGATAGCCAACGTCG 59.673 52.381 0.00 0.00 42.48 5.12
2075 3088 0.973496 TGCTGCATGGCAATGGTGAT 60.973 50.000 2.54 0.00 38.41 3.06
2156 3169 2.276244 CGCATCGCTTCACGCAAG 60.276 61.111 0.00 0.00 43.23 4.01
2183 3196 4.101790 CCGTTGCCACACATCGCC 62.102 66.667 0.00 0.00 39.61 5.54
2245 3465 5.587443 TCAACATTCTCTGATTGCCATACTG 59.413 40.000 0.00 0.00 0.00 2.74
2272 6367 3.004315 GTCTCTCTCGGCATAAGAAGAGG 59.996 52.174 0.00 0.00 0.00 3.69
2276 6371 4.211125 AGATGTCTCTCTCGGCATAAGAA 58.789 43.478 0.00 0.00 0.00 2.52
2292 6387 3.372206 CCAATTGGTCTTGTCGAGATGTC 59.628 47.826 16.90 0.00 36.61 3.06
2293 6388 3.338249 CCAATTGGTCTTGTCGAGATGT 58.662 45.455 16.90 0.00 36.61 3.06
2294 6389 2.679837 CCCAATTGGTCTTGTCGAGATG 59.320 50.000 22.91 0.00 36.61 2.90
2295 6390 2.356125 CCCCAATTGGTCTTGTCGAGAT 60.356 50.000 22.91 0.00 36.61 2.75
2309 6404 2.356125 CGATGTCTCAAGACCCCCAATT 60.356 50.000 7.66 0.00 44.15 2.32
2325 6420 3.431207 CGACCCTAACCCAATAACGATGT 60.431 47.826 0.00 0.00 0.00 3.06
2329 6424 2.273557 CACGACCCTAACCCAATAACG 58.726 52.381 0.00 0.00 0.00 3.18
2350 6445 3.651562 CGTAGCAACGGGAAAATACTG 57.348 47.619 0.00 0.00 45.50 2.74
2413 6508 0.169672 ATTCTCGTGACGTACCACCG 59.830 55.000 4.40 0.00 33.67 4.94
2428 6523 2.318908 TGCAACTTTGAGGGCAATTCT 58.681 42.857 0.00 0.00 33.25 2.40
2429 6524 2.818130 TGCAACTTTGAGGGCAATTC 57.182 45.000 0.00 0.00 33.25 2.17
2444 6539 6.014242 TGACATTGGTGGGTAATATTTTGCAA 60.014 34.615 0.00 0.00 0.00 4.08
2457 6552 2.158755 GGGAGTAGATGACATTGGTGGG 60.159 54.545 0.00 0.00 0.00 4.61
2477 6572 7.942894 AGAAAGATAAATATTTAGGAACGGGGG 59.057 37.037 13.15 0.00 0.00 5.40
2478 6573 8.919777 AGAAAGATAAATATTTAGGAACGGGG 57.080 34.615 13.15 0.00 0.00 5.73
2496 6591 9.213799 GTCACTTGTTGAAATCTCTAGAAAGAT 57.786 33.333 0.00 0.00 37.61 2.40
2497 6592 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
2498 6593 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
2499 6594 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
2500 6595 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
2501 6596 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
2502 6597 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
2503 6598 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
2504 6599 8.367911 TGTATGTAGTCACTTGTTGAAATCTCT 58.632 33.333 0.00 0.00 35.39 3.10
2505 6600 8.534333 TGTATGTAGTCACTTGTTGAAATCTC 57.466 34.615 0.00 0.00 35.39 2.75
2506 6601 8.902540 TTGTATGTAGTCACTTGTTGAAATCT 57.097 30.769 0.00 0.00 35.39 2.40
2507 6602 9.599322 CTTTGTATGTAGTCACTTGTTGAAATC 57.401 33.333 0.00 0.00 35.39 2.17
2508 6603 8.076178 GCTTTGTATGTAGTCACTTGTTGAAAT 58.924 33.333 0.00 0.00 35.39 2.17
2509 6604 7.066404 TGCTTTGTATGTAGTCACTTGTTGAAA 59.934 33.333 0.00 0.00 35.39 2.69
2510 6605 6.540551 TGCTTTGTATGTAGTCACTTGTTGAA 59.459 34.615 0.00 0.00 35.39 2.69
2511 6606 6.052360 TGCTTTGTATGTAGTCACTTGTTGA 58.948 36.000 0.00 0.00 0.00 3.18
2512 6607 6.299023 TGCTTTGTATGTAGTCACTTGTTG 57.701 37.500 0.00 0.00 0.00 3.33
2513 6608 6.935741 TTGCTTTGTATGTAGTCACTTGTT 57.064 33.333 0.00 0.00 0.00 2.83
2514 6609 6.935741 TTTGCTTTGTATGTAGTCACTTGT 57.064 33.333 0.00 0.00 0.00 3.16
2515 6610 8.075574 TCATTTTGCTTTGTATGTAGTCACTTG 58.924 33.333 0.00 0.00 0.00 3.16
2516 6611 8.165239 TCATTTTGCTTTGTATGTAGTCACTT 57.835 30.769 0.00 0.00 0.00 3.16
2517 6612 7.445402 ACTCATTTTGCTTTGTATGTAGTCACT 59.555 33.333 0.00 0.00 0.00 3.41
2518 6613 7.535258 CACTCATTTTGCTTTGTATGTAGTCAC 59.465 37.037 0.00 0.00 0.00 3.67
2519 6614 7.443879 TCACTCATTTTGCTTTGTATGTAGTCA 59.556 33.333 0.00 0.00 0.00 3.41
2520 6615 7.806690 TCACTCATTTTGCTTTGTATGTAGTC 58.193 34.615 0.00 0.00 0.00 2.59
2521 6616 7.744087 TCACTCATTTTGCTTTGTATGTAGT 57.256 32.000 0.00 0.00 0.00 2.73
2522 6617 9.282247 GATTCACTCATTTTGCTTTGTATGTAG 57.718 33.333 0.00 0.00 0.00 2.74
2523 6618 9.013229 AGATTCACTCATTTTGCTTTGTATGTA 57.987 29.630 0.00 0.00 0.00 2.29
2524 6619 7.889469 AGATTCACTCATTTTGCTTTGTATGT 58.111 30.769 0.00 0.00 0.00 2.29
2525 6620 9.282247 GTAGATTCACTCATTTTGCTTTGTATG 57.718 33.333 0.00 0.00 0.00 2.39
2526 6621 9.013229 TGTAGATTCACTCATTTTGCTTTGTAT 57.987 29.630 0.00 0.00 0.00 2.29
2527 6622 8.289618 GTGTAGATTCACTCATTTTGCTTTGTA 58.710 33.333 0.00 0.00 35.68 2.41
2528 6623 7.013655 AGTGTAGATTCACTCATTTTGCTTTGT 59.986 33.333 0.00 0.00 44.07 2.83
2529 6624 7.365741 AGTGTAGATTCACTCATTTTGCTTTG 58.634 34.615 0.00 0.00 44.07 2.77
2530 6625 7.516198 AGTGTAGATTCACTCATTTTGCTTT 57.484 32.000 0.00 0.00 44.07 3.51
2560 6655 9.642343 ACCACATACGGATGTATATAGACATAT 57.358 33.333 14.23 5.08 44.82 1.78
2562 6657 7.956328 ACCACATACGGATGTATATAGACAT 57.044 36.000 14.23 12.70 44.82 3.06
2563 6658 8.866970 TTACCACATACGGATGTATATAGACA 57.133 34.615 14.23 2.07 44.82 3.41
2564 6659 9.947669 GATTACCACATACGGATGTATATAGAC 57.052 37.037 14.23 0.00 44.82 2.59
2565 6660 9.689501 TGATTACCACATACGGATGTATATAGA 57.310 33.333 14.23 0.00 44.82 1.98
2569 6664 9.430623 CAAATGATTACCACATACGGATGTATA 57.569 33.333 14.23 6.38 44.82 1.47
2570 6665 8.154203 TCAAATGATTACCACATACGGATGTAT 58.846 33.333 14.23 7.46 44.82 2.29
2571 6666 7.501844 TCAAATGATTACCACATACGGATGTA 58.498 34.615 14.23 0.00 44.82 2.29
2573 6668 6.859420 TCAAATGATTACCACATACGGATG 57.141 37.500 5.94 5.94 39.16 3.51
2574 6669 7.873719 TTTCAAATGATTACCACATACGGAT 57.126 32.000 0.00 0.00 0.00 4.18
2575 6670 7.773224 AGATTTCAAATGATTACCACATACGGA 59.227 33.333 0.00 0.00 0.00 4.69
2576 6671 7.930217 AGATTTCAAATGATTACCACATACGG 58.070 34.615 0.00 0.00 0.00 4.02
2577 6672 8.830580 AGAGATTTCAAATGATTACCACATACG 58.169 33.333 0.00 0.00 0.00 3.06
2581 6676 9.958180 TTCTAGAGATTTCAAATGATTACCACA 57.042 29.630 0.00 0.00 0.00 4.17
2601 6696 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
2602 6697 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
2603 6698 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
2604 6699 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
2605 6700 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
2606 6701 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
2607 6702 6.120220 CCCTCCGTTCCTAAATATTTGTCTT 58.880 40.000 11.05 0.00 0.00 3.01
2608 6703 5.397559 CCCCTCCGTTCCTAAATATTTGTCT 60.398 44.000 11.05 0.00 0.00 3.41
2609 6704 4.820173 CCCCTCCGTTCCTAAATATTTGTC 59.180 45.833 11.05 0.00 0.00 3.18
2610 6705 4.228895 ACCCCTCCGTTCCTAAATATTTGT 59.771 41.667 11.05 0.00 0.00 2.83
2611 6706 4.788679 ACCCCTCCGTTCCTAAATATTTG 58.211 43.478 11.05 1.40 0.00 2.32
2612 6707 5.668991 ACTACCCCTCCGTTCCTAAATATTT 59.331 40.000 5.89 5.89 0.00 1.40
2613 6708 5.222086 ACTACCCCTCCGTTCCTAAATATT 58.778 41.667 0.00 0.00 0.00 1.28
2614 6709 4.824276 ACTACCCCTCCGTTCCTAAATAT 58.176 43.478 0.00 0.00 0.00 1.28
2615 6710 4.270317 ACTACCCCTCCGTTCCTAAATA 57.730 45.455 0.00 0.00 0.00 1.40
2616 6711 3.126323 ACTACCCCTCCGTTCCTAAAT 57.874 47.619 0.00 0.00 0.00 1.40
2617 6712 2.629017 ACTACCCCTCCGTTCCTAAA 57.371 50.000 0.00 0.00 0.00 1.85
2618 6713 2.582636 ACTACTACCCCTCCGTTCCTAA 59.417 50.000 0.00 0.00 0.00 2.69
2619 6714 2.092212 CACTACTACCCCTCCGTTCCTA 60.092 54.545 0.00 0.00 0.00 2.94
2620 6715 1.006020 ACTACTACCCCTCCGTTCCT 58.994 55.000 0.00 0.00 0.00 3.36
2621 6716 1.109609 CACTACTACCCCTCCGTTCC 58.890 60.000 0.00 0.00 0.00 3.62
2622 6717 2.134789 TCACTACTACCCCTCCGTTC 57.865 55.000 0.00 0.00 0.00 3.95
2623 6718 2.842645 ATCACTACTACCCCTCCGTT 57.157 50.000 0.00 0.00 0.00 4.44
2624 6719 3.959495 TTATCACTACTACCCCTCCGT 57.041 47.619 0.00 0.00 0.00 4.69
2625 6720 4.501058 GCTTTTATCACTACTACCCCTCCG 60.501 50.000 0.00 0.00 0.00 4.63
2626 6721 4.202336 GGCTTTTATCACTACTACCCCTCC 60.202 50.000 0.00 0.00 0.00 4.30
2627 6722 4.407945 TGGCTTTTATCACTACTACCCCTC 59.592 45.833 0.00 0.00 0.00 4.30
2628 6723 4.368067 TGGCTTTTATCACTACTACCCCT 58.632 43.478 0.00 0.00 0.00 4.79
2629 6724 4.765813 TGGCTTTTATCACTACTACCCC 57.234 45.455 0.00 0.00 0.00 4.95
2630 6725 6.826741 TGAAATGGCTTTTATCACTACTACCC 59.173 38.462 0.00 0.00 0.00 3.69
2631 6726 7.335924 TGTGAAATGGCTTTTATCACTACTACC 59.664 37.037 14.99 0.00 0.00 3.18
2632 6727 8.175716 GTGTGAAATGGCTTTTATCACTACTAC 58.824 37.037 14.99 5.52 32.76 2.73
2633 6728 7.880713 TGTGTGAAATGGCTTTTATCACTACTA 59.119 33.333 21.31 8.82 34.70 1.82
2634 6729 6.714810 TGTGTGAAATGGCTTTTATCACTACT 59.285 34.615 21.31 0.00 34.70 2.57
2635 6730 6.908825 TGTGTGAAATGGCTTTTATCACTAC 58.091 36.000 21.31 15.75 34.70 2.73
2636 6731 6.150976 CCTGTGTGAAATGGCTTTTATCACTA 59.849 38.462 21.31 11.24 34.70 2.74
2676 6771 1.898574 CCTATTGCATGGCCGGTCC 60.899 63.158 2.12 5.67 0.00 4.46
2679 6774 1.898574 GTCCCTATTGCATGGCCGG 60.899 63.158 0.00 0.00 0.00 6.13
3164 7330 4.143986 TGTTTGGGAAATTGGTTGAACC 57.856 40.909 7.57 7.57 39.22 3.62
3180 7346 5.411361 TCCTAGAATGGACGAACATTGTTTG 59.589 40.000 14.08 14.08 40.92 2.93
3192 7358 2.541556 GCGAACACTCCTAGAATGGAC 58.458 52.381 0.00 0.00 31.94 4.02
3203 7369 0.039437 TCTTGAGTCGGCGAACACTC 60.039 55.000 12.92 15.75 39.70 3.51
3299 7521 4.451774 CGTGGCCAATTTTCAAATTCATGT 59.548 37.500 7.24 0.00 36.52 3.21
3317 7539 5.399892 TCGTAAACAAATTTGAAATCGTGGC 59.600 36.000 24.64 4.22 0.00 5.01
3355 7577 8.077991 TGAGTCTCAATTTTGTGAAATCATGAC 58.922 33.333 0.00 0.00 34.44 3.06
3390 7612 4.827692 ACACATTTTGCTGCATCATCAAT 58.172 34.783 1.84 0.00 0.00 2.57
3392 7614 3.945981 ACACATTTTGCTGCATCATCA 57.054 38.095 1.84 0.00 0.00 3.07
3439 7661 4.762251 GGTCTAGTGCAACAGGAGAAAAAT 59.238 41.667 0.00 0.00 41.43 1.82
3460 7688 8.851541 TCGTTCCATTAATACTAACAAAAGGT 57.148 30.769 0.00 0.00 0.00 3.50
3558 7787 3.942829 TCAGCTTGATTACTCCAACCAG 58.057 45.455 0.00 0.00 0.00 4.00
3579 7809 2.159184 ACATCAATCTGTCACGCTCGAT 60.159 45.455 0.00 0.00 0.00 3.59
3582 7812 2.094894 CCAACATCAATCTGTCACGCTC 59.905 50.000 0.00 0.00 0.00 5.03
3586 7816 2.161855 TGGCCAACATCAATCTGTCAC 58.838 47.619 0.61 0.00 0.00 3.67
3592 7850 1.434696 CGGCTGGCCAACATCAATC 59.565 57.895 7.01 0.00 35.37 2.67
3649 7907 8.137437 GCCAATGAATTAACTATTAGCACATGT 58.863 33.333 0.00 0.00 0.00 3.21
3650 7908 8.355169 AGCCAATGAATTAACTATTAGCACATG 58.645 33.333 0.00 0.00 0.00 3.21
3651 7909 8.469309 AGCCAATGAATTAACTATTAGCACAT 57.531 30.769 0.00 0.00 0.00 3.21
3652 7910 7.880160 AGCCAATGAATTAACTATTAGCACA 57.120 32.000 0.00 0.00 0.00 4.57
3662 7941 6.862209 TGGACACATAAGCCAATGAATTAAC 58.138 36.000 3.05 0.00 0.00 2.01
3673 7952 4.097892 CCATTAAACCTGGACACATAAGCC 59.902 45.833 0.00 0.00 35.70 4.35
3683 7962 5.954153 TTACGGTATCCATTAAACCTGGA 57.046 39.130 0.00 0.00 46.45 3.86
3718 7997 3.751175 ACGGTTGATACACCAAGACAATG 59.249 43.478 0.00 0.00 36.49 2.82
3730 8009 4.460948 TGGACCTAAGAACGGTTGATAC 57.539 45.455 0.00 0.00 34.19 2.24
3731 8010 5.486735 TTTGGACCTAAGAACGGTTGATA 57.513 39.130 0.00 0.00 34.19 2.15
3738 8017 5.432885 ACAAACATTTGGACCTAAGAACG 57.567 39.130 9.09 0.00 42.34 3.95
3750 8029 4.552378 CGCCAACATTCCAACAAACATTTG 60.552 41.667 2.77 2.77 43.62 2.32
3752 8031 3.129871 CGCCAACATTCCAACAAACATT 58.870 40.909 0.00 0.00 0.00 2.71
3757 8036 0.387202 CCACGCCAACATTCCAACAA 59.613 50.000 0.00 0.00 0.00 2.83
3812 8091 1.290009 GGATTTGCTGCACACCCAC 59.710 57.895 0.00 0.00 0.00 4.61
3816 8095 3.855689 ACTTATGGATTTGCTGCACAC 57.144 42.857 0.00 0.00 0.00 3.82
3821 8100 7.445121 TCTCTATGGTACTTATGGATTTGCTG 58.555 38.462 0.00 0.00 0.00 4.41
3841 8120 6.821665 CCTTTATCACGGGTTTGAATTCTCTA 59.178 38.462 7.05 0.00 0.00 2.43
3977 8262 2.672961 TCCTTGAGCCAGTTGTATCG 57.327 50.000 0.00 0.00 0.00 2.92
3978 8263 4.379918 GCTTTTCCTTGAGCCAGTTGTATC 60.380 45.833 0.00 0.00 32.80 2.24
3986 8271 1.603455 CCCGCTTTTCCTTGAGCCA 60.603 57.895 0.00 0.00 35.49 4.75
4002 8287 3.318557 GGTGTAGTACTGTAGCTCATCCC 59.681 52.174 5.39 0.00 0.00 3.85
4003 8288 4.036971 CAGGTGTAGTACTGTAGCTCATCC 59.963 50.000 5.39 0.00 0.00 3.51
4026 8311 0.322975 AGCATCATCATAGGACCCGC 59.677 55.000 0.00 0.00 0.00 6.13
4044 8332 2.695314 GCCAAATCTGCGGAGGTAG 58.305 57.895 3.37 0.00 0.00 3.18
4066 8354 0.921347 CTATCTTGTACCGCACGTGC 59.079 55.000 30.42 30.42 37.78 5.34
4081 8369 7.271511 ACTGTTTGATGATCTGAGGAACTATC 58.728 38.462 0.00 0.00 41.55 2.08
4353 8650 1.777030 TTTTTGACGCATCGCACCGT 61.777 50.000 0.00 0.00 40.85 4.83
4355 8652 4.933483 TTTTTGACGCATCGCACC 57.067 50.000 0.00 0.00 0.00 5.01
4370 8667 1.691196 TGCCAGTACTGCTTGCTTTT 58.309 45.000 17.86 0.00 36.86 2.27
4447 8744 3.490249 CGTCCGAGGTAATAGATGCAACA 60.490 47.826 0.00 0.00 0.00 3.33
4557 8860 6.979817 CCTTCCAATTCGATGCATATTTGAAA 59.020 34.615 0.00 0.00 0.00 2.69
4591 8894 6.313905 ACAAAGAGTACTTATGGAATGCTTCG 59.686 38.462 0.00 0.00 35.05 3.79
4603 8906 5.235516 GGTAGCTGCAACAAAGAGTACTTA 58.764 41.667 3.61 0.00 35.05 2.24
4627 8930 2.883386 AGCTTCAGTTGCAGGAGAAAAG 59.117 45.455 0.00 0.00 0.00 2.27
4658 8961 0.678366 AATTGTGCGCCGGTATTGGA 60.678 50.000 4.18 0.00 0.00 3.53
4726 9029 8.647256 AAATCCATTTCTTCTTCTCATCAAGT 57.353 30.769 0.00 0.00 0.00 3.16
4727 9030 8.737175 TGAAATCCATTTCTTCTTCTCATCAAG 58.263 33.333 12.22 0.00 44.85 3.02
4735 9038 5.745769 GGCGAATGAAATCCATTTCTTCTTC 59.254 40.000 12.22 10.83 45.00 2.87
4794 9097 0.038310 CCTTGTTCCCTCTGGGTTCC 59.962 60.000 2.25 0.00 44.74 3.62
4806 9109 1.607148 GTGTAGTTGTGCCCCTTGTTC 59.393 52.381 0.00 0.00 0.00 3.18
4823 9126 3.379452 AGCAGCCTCTTAGGATAAGTGT 58.621 45.455 0.00 0.00 37.67 3.55
4873 9176 3.515602 AGTTCTGGCAAGAAATGGTCT 57.484 42.857 4.73 0.00 44.01 3.85
4888 9191 8.576442 TCAAGAACAAGAAGAAAACAAAGTTCT 58.424 29.630 0.00 0.00 44.29 3.01
4918 9221 5.246307 AGTGCTTTTATTGGAGTGTAGGAC 58.754 41.667 0.00 0.00 0.00 3.85
5019 9322 3.324268 TGTGGCATTTGTTGTGGATGAAT 59.676 39.130 0.00 0.00 0.00 2.57
5068 9371 5.339008 TGTATAGAGTGGACAATGGTGAC 57.661 43.478 0.00 0.00 0.00 3.67
5191 9494 8.850007 AAGTGGGAGAGAAAGTAGTTATTTTC 57.150 34.615 0.41 0.41 33.64 2.29
5257 9560 1.699634 TCCACAAGGTTAGAGCAGCTT 59.300 47.619 0.00 0.00 34.77 3.74
5373 9676 4.122776 CAAAGACCGTAGCTTCTGCATAT 58.877 43.478 0.00 0.00 42.74 1.78
5374 9677 3.194755 TCAAAGACCGTAGCTTCTGCATA 59.805 43.478 0.00 0.00 42.74 3.14
5375 9678 2.028112 TCAAAGACCGTAGCTTCTGCAT 60.028 45.455 0.00 0.00 42.74 3.96
5388 9691 4.036734 TGTTGTCAATGAGCTTCAAAGACC 59.963 41.667 13.44 5.60 35.04 3.85
5392 9695 4.644234 TCCTTGTTGTCAATGAGCTTCAAA 59.356 37.500 0.00 0.00 32.82 2.69
5450 9753 3.909364 TGCCCTTCCAATTTGATTCCTTT 59.091 39.130 0.00 0.00 0.00 3.11
5574 9877 0.622665 ATCAACCTCCTCCAAGGCAG 59.377 55.000 0.00 0.00 40.34 4.85
5588 9891 2.423577 AGCTGTACCGGACAAATCAAC 58.576 47.619 9.46 0.00 37.70 3.18
5611 9914 0.323451 TGTCGGCAGAGAGCTCCTTA 60.323 55.000 10.93 0.00 44.79 2.69
5684 9987 1.064621 CATGCCAAGGAAATCGCCG 59.935 57.895 0.00 0.00 0.00 6.46
5831 10134 5.046591 ACCGTCCATCTCTTACTGAATTCAA 60.047 40.000 9.88 0.00 0.00 2.69
5838 10141 4.392138 GGAAAAACCGTCCATCTCTTACTG 59.608 45.833 0.00 0.00 35.05 2.74
5896 10199 7.550551 TCTTCATCTTGTACTTGCCTTCTATTG 59.449 37.037 0.00 0.00 0.00 1.90
5902 10205 5.006386 CCTTCTTCATCTTGTACTTGCCTT 58.994 41.667 0.00 0.00 0.00 4.35
5909 10218 3.944015 AGCATGCCTTCTTCATCTTGTAC 59.056 43.478 15.66 0.00 0.00 2.90
5911 10220 3.083122 AGCATGCCTTCTTCATCTTGT 57.917 42.857 15.66 0.00 0.00 3.16
5985 10294 8.497554 CAATTTTCTTTGCAAAATAGCTGCTAA 58.502 29.630 14.13 0.00 40.59 3.09
6014 10323 0.037303 ACTGTCAGGGGTGATGCAAG 59.963 55.000 4.53 0.00 0.00 4.01
6026 10335 1.337260 CCGGTGAAGAGGAACTGTCAG 60.337 57.143 0.00 0.00 41.55 3.51
6028 10337 0.966920 TCCGGTGAAGAGGAACTGTC 59.033 55.000 0.00 0.00 41.55 3.51
6037 10346 2.962569 CGCTCAGTCCGGTGAAGA 59.037 61.111 0.00 0.00 0.00 2.87
6070 10379 6.256539 CCATATATGTTGTCAGTGACAGTGAC 59.743 42.308 29.03 29.03 46.17 3.67
6071 10380 6.340522 CCATATATGTTGTCAGTGACAGTGA 58.659 40.000 24.25 8.97 43.69 3.41
6072 10381 5.007039 GCCATATATGTTGTCAGTGACAGTG 59.993 44.000 24.25 14.81 43.69 3.66
6073 10382 5.118990 GCCATATATGTTGTCAGTGACAGT 58.881 41.667 24.25 16.86 43.69 3.55
6074 10383 5.007039 GTGCCATATATGTTGTCAGTGACAG 59.993 44.000 24.25 11.70 43.69 3.51
6075 10384 4.875536 GTGCCATATATGTTGTCAGTGACA 59.124 41.667 22.06 22.06 41.09 3.58
6076 10385 4.875536 TGTGCCATATATGTTGTCAGTGAC 59.124 41.667 16.68 16.68 0.00 3.67
6077 10386 5.096443 TGTGCCATATATGTTGTCAGTGA 57.904 39.130 11.73 0.00 0.00 3.41
6078 10387 5.816449 TTGTGCCATATATGTTGTCAGTG 57.184 39.130 11.73 0.00 0.00 3.66
6079 10388 5.163764 CGTTTGTGCCATATATGTTGTCAGT 60.164 40.000 11.73 0.00 0.00 3.41
6080 10389 5.064579 TCGTTTGTGCCATATATGTTGTCAG 59.935 40.000 11.73 0.00 0.00 3.51
6081 10390 4.938226 TCGTTTGTGCCATATATGTTGTCA 59.062 37.500 11.73 3.19 0.00 3.58
6082 10391 5.478233 TCGTTTGTGCCATATATGTTGTC 57.522 39.130 11.73 0.82 0.00 3.18
6083 10392 5.676079 GCTTCGTTTGTGCCATATATGTTGT 60.676 40.000 11.73 0.00 0.00 3.32
6084 10393 4.734854 GCTTCGTTTGTGCCATATATGTTG 59.265 41.667 11.73 0.00 0.00 3.33
6085 10394 4.640201 AGCTTCGTTTGTGCCATATATGTT 59.360 37.500 11.73 0.00 0.00 2.71
6086 10395 4.199310 AGCTTCGTTTGTGCCATATATGT 58.801 39.130 11.73 0.00 0.00 2.29
6087 10396 4.273235 TGAGCTTCGTTTGTGCCATATATG 59.727 41.667 5.68 5.68 0.00 1.78
6088 10397 4.273480 GTGAGCTTCGTTTGTGCCATATAT 59.727 41.667 0.00 0.00 0.00 0.86
6089 10398 3.621268 GTGAGCTTCGTTTGTGCCATATA 59.379 43.478 0.00 0.00 0.00 0.86
6090 10399 2.420022 GTGAGCTTCGTTTGTGCCATAT 59.580 45.455 0.00 0.00 0.00 1.78
6091 10400 1.804151 GTGAGCTTCGTTTGTGCCATA 59.196 47.619 0.00 0.00 0.00 2.74
6092 10401 0.593128 GTGAGCTTCGTTTGTGCCAT 59.407 50.000 0.00 0.00 0.00 4.40
6093 10402 0.746204 TGTGAGCTTCGTTTGTGCCA 60.746 50.000 0.00 0.00 0.00 4.92
6094 10403 0.593128 ATGTGAGCTTCGTTTGTGCC 59.407 50.000 0.00 0.00 0.00 5.01
6095 10404 1.664016 CCATGTGAGCTTCGTTTGTGC 60.664 52.381 0.00 0.00 0.00 4.57
6096 10405 1.872952 TCCATGTGAGCTTCGTTTGTG 59.127 47.619 0.00 0.00 0.00 3.33
6097 10406 2.254546 TCCATGTGAGCTTCGTTTGT 57.745 45.000 0.00 0.00 0.00 2.83
6098 10407 2.730090 GCATCCATGTGAGCTTCGTTTG 60.730 50.000 0.00 0.00 0.00 2.93
6099 10408 1.470098 GCATCCATGTGAGCTTCGTTT 59.530 47.619 0.00 0.00 0.00 3.60
6100 10409 1.089920 GCATCCATGTGAGCTTCGTT 58.910 50.000 0.00 0.00 0.00 3.85
6101 10410 0.036105 TGCATCCATGTGAGCTTCGT 60.036 50.000 0.00 0.00 0.00 3.85
6102 10411 1.063616 CTTGCATCCATGTGAGCTTCG 59.936 52.381 0.00 0.00 0.00 3.79
6103 10412 2.355132 CTCTTGCATCCATGTGAGCTTC 59.645 50.000 0.00 0.00 0.00 3.86
6104 10413 2.026542 TCTCTTGCATCCATGTGAGCTT 60.027 45.455 0.00 0.00 0.00 3.74
6105 10414 1.558294 TCTCTTGCATCCATGTGAGCT 59.442 47.619 0.00 0.00 0.00 4.09
6106 10415 1.669779 GTCTCTTGCATCCATGTGAGC 59.330 52.381 0.00 0.00 0.00 4.26
6107 10416 2.676839 GTGTCTCTTGCATCCATGTGAG 59.323 50.000 0.00 0.00 0.00 3.51
6131 10440 1.190178 AGAAGACCGCCTAAACCCGT 61.190 55.000 0.00 0.00 0.00 5.28
6133 10442 3.005554 GTTTAGAAGACCGCCTAAACCC 58.994 50.000 11.75 0.00 44.16 4.11
6140 10449 1.066136 GTGACGTTTAGAAGACCGCC 58.934 55.000 0.00 0.00 0.00 6.13
6321 10630 4.750598 AGAACGAAACTAGCCTTTTGAGAC 59.249 41.667 0.00 0.00 0.00 3.36
6351 10660 7.528307 ACTACTGAAGTCACAAGAACTATACG 58.472 38.462 0.00 0.00 30.33 3.06
6574 10884 1.699083 TCCTTGTCATGGAAGTGCTGA 59.301 47.619 4.99 0.00 0.00 4.26
6680 10990 2.190578 CTTCACCATCCCCGGCTC 59.809 66.667 0.00 0.00 0.00 4.70
6819 11129 4.950050 AGCGTTGATTCATCTAAGGTAGG 58.050 43.478 0.00 0.00 0.00 3.18
6826 11136 3.387699 TGGATGGAGCGTTGATTCATCTA 59.612 43.478 3.60 0.00 35.76 1.98
6875 11204 4.591321 TGAACAAAGGGATAAGGATGCT 57.409 40.909 0.00 0.00 0.00 3.79
6880 11209 6.663523 AGTGGTTAATGAACAAAGGGATAAGG 59.336 38.462 0.00 0.00 37.29 2.69
6965 11314 0.461870 TTCTGTAATGCGGCGCTGAT 60.462 50.000 33.26 20.21 0.00 2.90
6980 11329 8.041323 ACTGTAACAAGGGATAACTGTATTCTG 58.959 37.037 0.00 0.00 0.00 3.02
7020 11369 0.395586 TTGCACAGCAGGGTTGTTCT 60.396 50.000 0.00 0.00 40.61 3.01
7025 11374 0.111061 TCATCTTGCACAGCAGGGTT 59.889 50.000 1.24 0.00 40.61 4.11
7034 11383 7.661968 TGGAGACTATAAGTATCATCTTGCAC 58.338 38.462 4.30 0.00 38.15 4.57
7111 11486 1.629043 TCGTAGGCTCCAACACTCTT 58.371 50.000 0.00 0.00 0.00 2.85
7138 11520 1.255882 CTGTTAATTGGGCAGGCACA 58.744 50.000 0.00 0.00 0.00 4.57
7174 11558 4.851639 AATGTTGAGGAAGGCACTCTAT 57.148 40.909 5.66 0.00 38.49 1.98
7175 11559 4.081087 GGTAATGTTGAGGAAGGCACTCTA 60.081 45.833 5.66 0.00 38.49 2.43
7181 11565 3.421844 ACAAGGTAATGTTGAGGAAGGC 58.578 45.455 0.00 0.00 0.00 4.35
7290 11720 8.640063 AATTAACTCATATAGATGGCATGCAA 57.360 30.769 21.36 9.21 33.49 4.08
7327 11757 8.950007 ACCAGGGAAATTAGACTTTTATTTGA 57.050 30.769 0.00 0.00 0.00 2.69
7340 11770 5.187687 GGTCGACAATAACCAGGGAAATTA 58.812 41.667 18.91 0.00 35.53 1.40
7410 11841 6.038825 TCACCAACACACTCGAATAAAATGTT 59.961 34.615 0.00 0.00 0.00 2.71
7528 11971 8.542132 TGTAGTAAAACACAACGTCTGAAATAC 58.458 33.333 0.00 0.00 0.00 1.89
7548 11991 6.638096 TGCTAGTACAACACACTTGTAGTA 57.362 37.500 0.00 7.31 38.86 1.82
7662 12162 8.801715 TTCTGATTTTTAACAAATCTCAGTGC 57.198 30.769 16.81 0.00 37.50 4.40
7783 12284 7.562454 CCCATATGGATGTAATTTGCATAGGAT 59.438 37.037 24.00 0.00 32.93 3.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.