Multiple sequence alignment - TraesCS1A01G022200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G022200 chr1A 100.000 2243 0 0 1 2243 10708502 10710744 0.000000e+00 4143.0
1 TraesCS1A01G022200 chr1B 89.378 1158 96 12 367 1517 13013452 13014589 0.000000e+00 1432.0
2 TraesCS1A01G022200 chr1B 89.119 1158 99 12 367 1517 13500863 13502000 0.000000e+00 1415.0
3 TraesCS1A01G022200 chr1B 89.130 1150 105 10 367 1505 12499926 12501066 0.000000e+00 1413.0
4 TraesCS1A01G022200 chr1B 89.130 1150 105 10 367 1505 12570117 12571257 0.000000e+00 1413.0
5 TraesCS1A01G022200 chr1B 87.155 1051 116 8 373 1418 12374340 12373304 0.000000e+00 1175.0
6 TraesCS1A01G022200 chr1B 93.581 296 18 1 80 374 13500465 13500760 7.350000e-120 440.0
7 TraesCS1A01G022200 chr1B 87.661 389 32 6 1718 2100 13502010 13502388 2.640000e-119 438.0
8 TraesCS1A01G022200 chr1B 92.905 296 20 1 80 374 13013054 13013349 1.590000e-116 429.0
9 TraesCS1A01G022200 chr1B 86.118 389 38 6 1718 2100 13014599 13014977 2.680000e-109 405.0
10 TraesCS1A01G022200 chr1B 85.667 300 39 3 82 380 12499534 12499830 1.670000e-81 313.0
11 TraesCS1A01G022200 chr1B 85.667 300 39 3 82 380 12569725 12570021 1.670000e-81 313.0
12 TraesCS1A01G022200 chr1B 90.640 203 13 3 1295 1494 12572405 12572604 4.750000e-67 265.0
13 TraesCS1A01G022200 chr1B 92.800 125 8 1 2119 2242 566709301 566709425 1.770000e-41 180.0
14 TraesCS1A01G022200 chr1D 86.595 746 78 10 709 1454 9418008 9418731 0.000000e+00 804.0
15 TraesCS1A01G022200 chr1D 88.304 171 8 2 1933 2100 9431913 9432074 6.320000e-46 195.0
16 TraesCS1A01G022200 chr1D 95.833 72 3 0 1526 1597 48187308 48187379 1.410000e-22 117.0
17 TraesCS1A01G022200 chr1D 95.833 72 3 0 1526 1597 56053443 56053372 1.410000e-22 117.0
18 TraesCS1A01G022200 chr1D 93.939 66 4 0 6 71 9412993 9413058 1.420000e-17 100.0
19 TraesCS1A01G022200 chr1D 81.746 126 11 4 714 835 9485850 9485967 6.590000e-16 95.3
20 TraesCS1A01G022200 chr7B 86.631 187 21 3 1526 1711 167006072 167005889 1.050000e-48 204.0
21 TraesCS1A01G022200 chr5B 93.600 125 7 1 2120 2243 617596069 617596193 3.800000e-43 185.0
22 TraesCS1A01G022200 chr5B 91.935 124 8 2 2122 2243 454962322 454962445 2.960000e-39 172.0
23 TraesCS1A01G022200 chr2A 93.548 124 8 0 2120 2243 762908973 762908850 3.800000e-43 185.0
24 TraesCS1A01G022200 chr2A 92.562 121 7 2 2119 2237 2905966 2906086 2.960000e-39 172.0
25 TraesCS1A01G022200 chr7A 93.496 123 7 1 2122 2243 46109228 46109350 4.920000e-42 182.0
26 TraesCS1A01G022200 chr7A 92.000 125 9 1 2120 2243 682875512 682875636 8.230000e-40 174.0
27 TraesCS1A01G022200 chr7A 90.678 118 11 0 1594 1711 556161214 556161331 8.290000e-35 158.0
28 TraesCS1A01G022200 chr7A 88.889 126 13 1 1594 1719 693023490 693023614 1.070000e-33 154.0
29 TraesCS1A01G022200 chr6B 91.473 129 7 4 2118 2243 696244758 696244885 8.230000e-40 174.0
30 TraesCS1A01G022200 chr6B 97.222 72 2 0 1526 1597 283769605 283769534 3.030000e-24 122.0
31 TraesCS1A01G022200 chr6B 97.183 71 2 0 1526 1596 585899890 585899820 1.090000e-23 121.0
32 TraesCS1A01G022200 chr3A 90.769 130 10 2 2115 2243 50862862 50862990 2.960000e-39 172.0
33 TraesCS1A01G022200 chr5A 90.551 127 11 1 1594 1719 571784322 571784196 1.380000e-37 167.0
34 TraesCS1A01G022200 chr5A 97.222 72 2 0 1526 1597 188351120 188351049 3.030000e-24 122.0
35 TraesCS1A01G022200 chr6D 90.678 118 11 0 1594 1711 450269457 450269574 8.290000e-35 158.0
36 TraesCS1A01G022200 chr6D 95.833 72 3 0 1526 1597 216518476 216518405 1.410000e-22 117.0
37 TraesCS1A01G022200 chr4A 90.083 121 11 1 1591 1711 710305976 710306095 2.980000e-34 156.0
38 TraesCS1A01G022200 chr2B 80.617 227 22 10 1526 1730 775383698 775383472 2.980000e-34 156.0
39 TraesCS1A01G022200 chrUn 89.916 119 12 0 1594 1712 50850372 50850490 1.070000e-33 154.0
40 TraesCS1A01G022200 chrUn 95.833 72 3 0 1526 1597 336508939 336509010 1.410000e-22 117.0
41 TraesCS1A01G022200 chr4D 89.916 119 12 0 1594 1712 486098912 486099030 1.070000e-33 154.0
42 TraesCS1A01G022200 chr7D 97.222 72 2 0 1526 1597 217220957 217220886 3.030000e-24 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G022200 chr1A 10708502 10710744 2242 False 4143.000000 4143 100.000000 1 2243 1 chr1A.!!$F1 2242
1 TraesCS1A01G022200 chr1B 12373304 12374340 1036 True 1175.000000 1175 87.155000 373 1418 1 chr1B.!!$R1 1045
2 TraesCS1A01G022200 chr1B 12499534 12501066 1532 False 863.000000 1413 87.398500 82 1505 2 chr1B.!!$F2 1423
3 TraesCS1A01G022200 chr1B 13500465 13502388 1923 False 764.333333 1415 90.120333 80 2100 3 chr1B.!!$F5 2020
4 TraesCS1A01G022200 chr1B 13013054 13014977 1923 False 755.333333 1432 89.467000 80 2100 3 chr1B.!!$F4 2020
5 TraesCS1A01G022200 chr1B 12569725 12572604 2879 False 663.666667 1413 88.479000 82 1505 3 chr1B.!!$F3 1423
6 TraesCS1A01G022200 chr1D 9418008 9418731 723 False 804.000000 804 86.595000 709 1454 1 chr1D.!!$F2 745

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
71 72 0.321653 GGTGAACCTCGCTGTGGATT 60.322 55.0 4.13 0.0 0.0 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1672 1853 0.039618 GACCCAAAAGGGCAGATCCA 59.96 55.0 0.0 0.0 46.95 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.519579 TGCAATTGACAACAAACACAGG 58.480 40.909 10.34 0.00 39.54 4.00
23 24 3.194329 TGCAATTGACAACAAACACAGGA 59.806 39.130 10.34 0.00 39.54 3.86
24 25 3.798337 GCAATTGACAACAAACACAGGAG 59.202 43.478 10.34 0.00 39.54 3.69
25 26 4.362279 CAATTGACAACAAACACAGGAGG 58.638 43.478 0.00 0.00 39.54 4.30
26 27 3.358111 TTGACAACAAACACAGGAGGA 57.642 42.857 0.00 0.00 32.73 3.71
27 28 3.358111 TGACAACAAACACAGGAGGAA 57.642 42.857 0.00 0.00 0.00 3.36
28 29 3.013921 TGACAACAAACACAGGAGGAAC 58.986 45.455 0.00 0.00 0.00 3.62
29 30 3.013921 GACAACAAACACAGGAGGAACA 58.986 45.455 0.00 0.00 0.00 3.18
30 31 3.426615 ACAACAAACACAGGAGGAACAA 58.573 40.909 0.00 0.00 0.00 2.83
31 32 3.443681 ACAACAAACACAGGAGGAACAAG 59.556 43.478 0.00 0.00 0.00 3.16
32 33 2.024414 ACAAACACAGGAGGAACAAGC 58.976 47.619 0.00 0.00 0.00 4.01
33 34 1.338020 CAAACACAGGAGGAACAAGCC 59.662 52.381 0.00 0.00 0.00 4.35
34 35 0.846693 AACACAGGAGGAACAAGCCT 59.153 50.000 0.00 0.00 42.17 4.58
35 36 0.846693 ACACAGGAGGAACAAGCCTT 59.153 50.000 0.00 0.00 38.73 4.35
36 37 1.242076 CACAGGAGGAACAAGCCTTG 58.758 55.000 2.11 2.11 38.73 3.61
37 38 1.140312 ACAGGAGGAACAAGCCTTGA 58.860 50.000 12.25 0.00 38.73 3.02
38 39 1.707427 ACAGGAGGAACAAGCCTTGAT 59.293 47.619 12.25 0.00 38.73 2.57
39 40 2.290577 ACAGGAGGAACAAGCCTTGATC 60.291 50.000 12.25 8.93 38.73 2.92
40 41 2.026449 CAGGAGGAACAAGCCTTGATCT 60.026 50.000 12.25 5.15 38.73 2.75
41 42 3.198635 CAGGAGGAACAAGCCTTGATCTA 59.801 47.826 12.25 0.00 38.73 1.98
42 43 4.043596 AGGAGGAACAAGCCTTGATCTAT 58.956 43.478 12.25 2.22 38.73 1.98
43 44 4.476479 AGGAGGAACAAGCCTTGATCTATT 59.524 41.667 12.25 0.00 38.73 1.73
44 45 5.044550 AGGAGGAACAAGCCTTGATCTATTT 60.045 40.000 12.25 0.00 38.73 1.40
45 46 5.298026 GGAGGAACAAGCCTTGATCTATTTC 59.702 44.000 12.25 3.17 38.73 2.17
46 47 4.878397 AGGAACAAGCCTTGATCTATTTCG 59.122 41.667 12.25 0.00 33.46 3.46
47 48 4.876107 GGAACAAGCCTTGATCTATTTCGA 59.124 41.667 12.25 0.00 33.48 3.71
48 49 5.007136 GGAACAAGCCTTGATCTATTTCGAG 59.993 44.000 12.25 0.00 33.48 4.04
49 50 5.344743 ACAAGCCTTGATCTATTTCGAGA 57.655 39.130 12.25 0.00 29.82 4.04
50 51 5.734720 ACAAGCCTTGATCTATTTCGAGAA 58.265 37.500 12.25 0.00 29.82 2.87
51 52 5.814705 ACAAGCCTTGATCTATTTCGAGAAG 59.185 40.000 12.25 0.00 29.82 2.85
52 53 4.954875 AGCCTTGATCTATTTCGAGAAGG 58.045 43.478 0.00 0.00 33.05 3.46
53 54 4.061596 GCCTTGATCTATTTCGAGAAGGG 58.938 47.826 0.00 0.00 31.65 3.95
54 55 4.443598 GCCTTGATCTATTTCGAGAAGGGT 60.444 45.833 0.00 0.00 31.65 4.34
55 56 5.053145 CCTTGATCTATTTCGAGAAGGGTG 58.947 45.833 0.00 0.00 29.82 4.61
56 57 5.163405 CCTTGATCTATTTCGAGAAGGGTGA 60.163 44.000 0.00 0.00 29.82 4.02
57 58 5.932619 TGATCTATTTCGAGAAGGGTGAA 57.067 39.130 0.00 0.00 0.00 3.18
58 59 5.661458 TGATCTATTTCGAGAAGGGTGAAC 58.339 41.667 0.00 0.00 0.00 3.18
59 60 4.467198 TCTATTTCGAGAAGGGTGAACC 57.533 45.455 0.00 0.00 40.67 3.62
68 69 2.358737 GGGTGAACCTCGCTGTGG 60.359 66.667 0.00 0.00 35.85 4.17
69 70 2.741092 GGTGAACCTCGCTGTGGA 59.259 61.111 4.13 0.00 0.00 4.02
70 71 1.296715 GGTGAACCTCGCTGTGGAT 59.703 57.895 4.13 0.00 0.00 3.41
71 72 0.321653 GGTGAACCTCGCTGTGGATT 60.322 55.000 4.13 0.00 0.00 3.01
72 73 1.066430 GGTGAACCTCGCTGTGGATTA 60.066 52.381 4.13 0.00 0.00 1.75
73 74 2.000447 GTGAACCTCGCTGTGGATTAC 59.000 52.381 4.13 0.00 0.00 1.89
74 75 1.899814 TGAACCTCGCTGTGGATTACT 59.100 47.619 4.13 0.00 0.00 2.24
75 76 2.271800 GAACCTCGCTGTGGATTACTG 58.728 52.381 4.13 0.00 0.00 2.74
76 77 1.557099 ACCTCGCTGTGGATTACTGA 58.443 50.000 4.13 0.00 0.00 3.41
77 78 1.899814 ACCTCGCTGTGGATTACTGAA 59.100 47.619 4.13 0.00 0.00 3.02
78 79 2.271800 CCTCGCTGTGGATTACTGAAC 58.728 52.381 0.00 0.00 0.00 3.18
83 84 2.611971 GCTGTGGATTACTGAACCGACA 60.612 50.000 0.00 0.00 0.00 4.35
104 105 4.282703 ACAATGACCCACTTAGAAGTACGT 59.717 41.667 0.00 0.00 37.08 3.57
261 263 0.443869 ATGAACGTCGCAATCAGCAC 59.556 50.000 0.00 0.00 46.13 4.40
290 292 0.716108 CGTCGAGCATGACTTTCACC 59.284 55.000 0.00 0.00 36.71 4.02
320 322 2.285442 ACCAGGGGTCTACCAGCC 60.285 66.667 0.81 0.00 42.91 4.85
366 368 1.002430 TCCAACACATCAGACCAGAGC 59.998 52.381 0.00 0.00 0.00 4.09
370 372 1.134877 ACACATCAGACCAGAGCATCG 60.135 52.381 0.00 0.00 42.67 3.84
414 526 2.025887 AGAATCAACCTTACCTGCCCAG 60.026 50.000 0.00 0.00 0.00 4.45
418 530 2.436646 CCTTACCTGCCCAGCACG 60.437 66.667 0.00 0.00 33.79 5.34
554 670 7.972832 TTGGTATCACCTGTTACTAAACTTG 57.027 36.000 0.00 0.00 39.58 3.16
587 703 2.858839 TGTACGTGCACATAGAACTCG 58.141 47.619 18.64 1.42 0.00 4.18
607 723 2.061028 GAAAATTTGAAGTGCTGCCCG 58.939 47.619 0.00 0.00 0.00 6.13
629 749 5.047021 CCGGATAAGACATGATGTAGTGGAT 60.047 44.000 0.00 0.00 0.00 3.41
633 753 8.099537 GGATAAGACATGATGTAGTGGATCATT 58.900 37.037 0.00 0.00 38.28 2.57
686 806 3.795638 GCAGCAGCCTTACGTACC 58.204 61.111 0.00 0.00 33.58 3.34
755 875 5.689835 TGCATGCCTATTGTATTGTAGGAA 58.310 37.500 16.68 0.00 39.91 3.36
759 879 6.068461 TGCCTATTGTATTGTAGGAAACCA 57.932 37.500 2.74 0.00 39.91 3.67
816 940 8.614469 TTCACTTGTTGTCAATATGTGTCATA 57.386 30.769 20.46 6.05 32.65 2.15
841 966 0.764271 TGTCATGCTCACCAAGGACA 59.236 50.000 0.00 0.00 38.61 4.02
842 967 1.271001 TGTCATGCTCACCAAGGACAG 60.271 52.381 0.00 0.00 37.09 3.51
843 968 0.325933 TCATGCTCACCAAGGACAGG 59.674 55.000 0.00 0.00 0.00 4.00
844 969 0.325933 CATGCTCACCAAGGACAGGA 59.674 55.000 0.00 0.00 0.00 3.86
845 970 0.326264 ATGCTCACCAAGGACAGGAC 59.674 55.000 0.00 0.00 0.00 3.85
870 995 1.676438 GCGCGATGCACAATTGTTGG 61.676 55.000 12.10 0.00 45.45 3.77
908 1033 2.014128 CATTAACGTAGCCCCAAGGTG 58.986 52.381 0.00 0.00 34.57 4.00
909 1034 0.325602 TTAACGTAGCCCCAAGGTGG 59.674 55.000 0.00 0.00 37.25 4.61
928 1053 5.914716 AGGTGGTCTATAAATACCATCCCAA 59.085 40.000 1.21 0.00 46.29 4.12
973 1098 8.777865 ATGCAGCGTATATACATCTACAATTT 57.222 30.769 13.22 0.00 0.00 1.82
988 1113 4.510038 ACAATTTGAGCTGATCACCAAC 57.490 40.909 2.79 0.00 37.77 3.77
990 1115 4.341806 ACAATTTGAGCTGATCACCAACAA 59.658 37.500 2.79 0.00 37.77 2.83
997 1122 0.770499 TGATCACCAACAAGGCAGGA 59.230 50.000 0.00 0.00 43.14 3.86
1010 1135 1.617947 GGCAGGACGATGGGAAGAGT 61.618 60.000 0.00 0.00 0.00 3.24
1020 1145 2.432628 GGAAGAGTCGTGCCCGTG 60.433 66.667 0.00 0.00 35.01 4.94
1081 1206 2.363795 CGGAGGTAGTGGGCTGGA 60.364 66.667 0.00 0.00 0.00 3.86
1112 1237 2.434185 GGCGGCACAGATCAACGA 60.434 61.111 3.07 0.00 0.00 3.85
1116 1241 1.674611 CGGCACAGATCAACGACGAC 61.675 60.000 0.00 0.00 0.00 4.34
1122 1247 1.215647 GATCAACGACGACAGGCCT 59.784 57.895 0.00 0.00 0.00 5.19
1130 1255 0.459237 GACGACAGGCCTGATGTCTG 60.459 60.000 39.19 22.26 43.95 3.51
1149 1274 3.041211 CTGGGTCACCCTGATCTATTCA 58.959 50.000 16.04 0.00 45.70 2.57
1203 1328 0.389948 GCGTCGTTGTCCTCTCCAAT 60.390 55.000 0.00 0.00 0.00 3.16
1208 1333 2.632996 TCGTTGTCCTCTCCAATGAAGT 59.367 45.455 0.00 0.00 35.48 3.01
1232 1357 3.047877 CGTTGTGAAGACCCCCGC 61.048 66.667 0.00 0.00 0.00 6.13
1274 1399 4.408821 CAACGGGCAGGGCAGCTA 62.409 66.667 0.00 0.00 34.17 3.32
1320 1446 3.386726 TGTGCCCACTGGTATCATACTAC 59.613 47.826 0.00 0.00 0.00 2.73
1321 1447 3.641906 GTGCCCACTGGTATCATACTACT 59.358 47.826 0.00 0.00 0.00 2.57
1518 1646 8.262715 TCATCATATTTAGTTTGCTTTCGTCA 57.737 30.769 0.00 0.00 0.00 4.35
1519 1647 8.175069 TCATCATATTTAGTTTGCTTTCGTCAC 58.825 33.333 0.00 0.00 0.00 3.67
1522 1650 8.869897 TCATATTTAGTTTGCTTTCGTCACTAG 58.130 33.333 0.00 0.00 0.00 2.57
1523 1651 8.869897 CATATTTAGTTTGCTTTCGTCACTAGA 58.130 33.333 0.00 0.00 0.00 2.43
1527 1655 6.619801 AGTTTGCTTTCGTCACTAGAAAAT 57.380 33.333 0.00 0.00 37.18 1.82
1529 1657 8.324163 AGTTTGCTTTCGTCACTAGAAAATAT 57.676 30.769 0.00 0.00 37.18 1.28
1530 1658 8.230486 AGTTTGCTTTCGTCACTAGAAAATATG 58.770 33.333 0.00 0.00 37.18 1.78
1531 1659 6.662414 TGCTTTCGTCACTAGAAAATATGG 57.338 37.500 0.00 0.00 37.18 2.74
1533 1661 6.876789 TGCTTTCGTCACTAGAAAATATGGAA 59.123 34.615 0.00 0.00 37.18 3.53
1534 1662 7.064609 TGCTTTCGTCACTAGAAAATATGGAAG 59.935 37.037 0.00 0.00 37.18 3.46
1535 1663 7.064728 GCTTTCGTCACTAGAAAATATGGAAGT 59.935 37.037 0.00 0.00 37.18 3.01
1536 1664 9.582431 CTTTCGTCACTAGAAAATATGGAAGTA 57.418 33.333 0.00 0.00 37.18 2.24
1596 1777 9.825972 ATTTGCGTGTTATTATATGATTAGCAC 57.174 29.630 0.00 0.00 0.00 4.40
1597 1778 7.954788 TGCGTGTTATTATATGATTAGCACA 57.045 32.000 0.00 0.00 30.04 4.57
1598 1779 7.792925 TGCGTGTTATTATATGATTAGCACAC 58.207 34.615 0.00 0.00 30.04 3.82
1599 1780 7.655732 TGCGTGTTATTATATGATTAGCACACT 59.344 33.333 0.00 0.00 31.74 3.55
1600 1781 9.135843 GCGTGTTATTATATGATTAGCACACTA 57.864 33.333 0.00 0.00 31.74 2.74
1614 1795 3.345087 CACTAAACGTGTTCAGCGC 57.655 52.632 0.00 0.00 38.84 5.92
1615 1796 0.859232 CACTAAACGTGTTCAGCGCT 59.141 50.000 2.64 2.64 38.84 5.92
1616 1797 1.136611 CACTAAACGTGTTCAGCGCTC 60.137 52.381 7.13 0.00 38.84 5.03
1617 1798 0.091344 CTAAACGTGTTCAGCGCTCG 59.909 55.000 7.13 10.96 0.00 5.03
1618 1799 0.318022 TAAACGTGTTCAGCGCTCGA 60.318 50.000 20.47 13.06 0.00 4.04
1619 1800 1.818221 AAACGTGTTCAGCGCTCGAC 61.818 55.000 20.47 15.98 0.00 4.20
1620 1801 2.729491 CGTGTTCAGCGCTCGACA 60.729 61.111 7.13 13.03 0.00 4.35
1621 1802 2.088763 CGTGTTCAGCGCTCGACAT 61.089 57.895 21.21 0.00 0.00 3.06
1622 1803 1.617755 CGTGTTCAGCGCTCGACATT 61.618 55.000 21.21 0.00 0.00 2.71
1623 1804 1.346365 GTGTTCAGCGCTCGACATTA 58.654 50.000 21.21 0.91 0.00 1.90
1624 1805 1.724623 GTGTTCAGCGCTCGACATTAA 59.275 47.619 21.21 0.59 0.00 1.40
1625 1806 2.156891 GTGTTCAGCGCTCGACATTAAA 59.843 45.455 21.21 0.27 0.00 1.52
1626 1807 2.411748 TGTTCAGCGCTCGACATTAAAG 59.588 45.455 7.13 0.00 0.00 1.85
1627 1808 0.999406 TCAGCGCTCGACATTAAAGC 59.001 50.000 7.13 0.00 0.00 3.51
1628 1809 0.721154 CAGCGCTCGACATTAAAGCA 59.279 50.000 7.13 0.00 35.76 3.91
1629 1810 1.002366 AGCGCTCGACATTAAAGCAG 58.998 50.000 2.64 0.00 35.76 4.24
1630 1811 0.721718 GCGCTCGACATTAAAGCAGT 59.278 50.000 0.00 0.00 35.76 4.40
1631 1812 1.267087 GCGCTCGACATTAAAGCAGTC 60.267 52.381 0.00 0.00 35.76 3.51
1632 1813 2.263077 CGCTCGACATTAAAGCAGTCT 58.737 47.619 0.00 0.00 35.76 3.24
1633 1814 3.435566 CGCTCGACATTAAAGCAGTCTA 58.564 45.455 0.00 0.00 35.76 2.59
1634 1815 3.483922 CGCTCGACATTAAAGCAGTCTAG 59.516 47.826 0.00 0.00 35.76 2.43
1635 1816 3.799420 GCTCGACATTAAAGCAGTCTAGG 59.201 47.826 0.00 0.00 36.06 3.02
1636 1817 4.678309 GCTCGACATTAAAGCAGTCTAGGT 60.678 45.833 0.00 0.00 36.06 3.08
1637 1818 4.995124 TCGACATTAAAGCAGTCTAGGTC 58.005 43.478 0.00 0.00 0.00 3.85
1638 1819 3.791887 CGACATTAAAGCAGTCTAGGTCG 59.208 47.826 0.00 0.00 39.41 4.79
1639 1820 4.674623 CGACATTAAAGCAGTCTAGGTCGT 60.675 45.833 0.00 0.00 40.27 4.34
1640 1821 5.148651 ACATTAAAGCAGTCTAGGTCGTT 57.851 39.130 0.00 0.00 0.00 3.85
1641 1822 4.929808 ACATTAAAGCAGTCTAGGTCGTTG 59.070 41.667 0.00 0.00 0.00 4.10
1642 1823 4.859304 TTAAAGCAGTCTAGGTCGTTGA 57.141 40.909 0.00 0.00 0.00 3.18
1643 1824 3.746045 AAAGCAGTCTAGGTCGTTGAA 57.254 42.857 0.00 0.00 0.00 2.69
1644 1825 3.963428 AAGCAGTCTAGGTCGTTGAAT 57.037 42.857 0.00 0.00 0.00 2.57
1645 1826 3.963428 AGCAGTCTAGGTCGTTGAATT 57.037 42.857 0.00 0.00 0.00 2.17
1646 1827 5.401531 AAGCAGTCTAGGTCGTTGAATTA 57.598 39.130 0.00 0.00 0.00 1.40
1647 1828 5.401531 AGCAGTCTAGGTCGTTGAATTAA 57.598 39.130 0.00 0.00 0.00 1.40
1648 1829 5.169295 AGCAGTCTAGGTCGTTGAATTAAC 58.831 41.667 0.00 0.00 35.90 2.01
1649 1830 4.927425 GCAGTCTAGGTCGTTGAATTAACA 59.073 41.667 0.00 0.00 39.30 2.41
1650 1831 5.581085 GCAGTCTAGGTCGTTGAATTAACAT 59.419 40.000 0.00 0.00 39.30 2.71
1651 1832 6.755141 GCAGTCTAGGTCGTTGAATTAACATA 59.245 38.462 0.00 0.00 39.30 2.29
1652 1833 7.277098 GCAGTCTAGGTCGTTGAATTAACATAA 59.723 37.037 0.00 0.00 39.30 1.90
1653 1834 9.314321 CAGTCTAGGTCGTTGAATTAACATAAT 57.686 33.333 0.00 0.00 39.30 1.28
1654 1835 9.886132 AGTCTAGGTCGTTGAATTAACATAATT 57.114 29.630 0.00 0.00 39.30 1.40
1662 1843 9.944663 TCGTTGAATTAACATAATTTGATAGCC 57.055 29.630 0.00 0.00 39.30 3.93
1663 1844 9.180678 CGTTGAATTAACATAATTTGATAGCCC 57.819 33.333 0.00 0.00 39.30 5.19
1666 1847 9.639563 TGAATTAACATAATTTGATAGCCCAGA 57.360 29.630 0.00 0.00 0.00 3.86
1674 1855 9.865321 CATAATTTGATAGCCCAGATTAATTGG 57.135 33.333 8.77 8.77 30.33 3.16
1675 1856 9.827198 ATAATTTGATAGCCCAGATTAATTGGA 57.173 29.630 14.59 0.93 37.96 3.53
1676 1857 8.731591 AATTTGATAGCCCAGATTAATTGGAT 57.268 30.769 14.59 6.84 37.96 3.41
1677 1858 7.765695 TTTGATAGCCCAGATTAATTGGATC 57.234 36.000 14.59 11.13 37.96 3.36
1678 1859 6.708885 TGATAGCCCAGATTAATTGGATCT 57.291 37.500 14.59 12.97 37.96 2.75
1679 1860 6.479006 TGATAGCCCAGATTAATTGGATCTG 58.521 40.000 19.19 19.19 46.40 2.90
1680 1861 3.494332 AGCCCAGATTAATTGGATCTGC 58.506 45.455 20.10 13.71 45.80 4.26
1681 1862 2.560105 GCCCAGATTAATTGGATCTGCC 59.440 50.000 20.10 13.06 45.80 4.85
1682 1863 3.160269 CCCAGATTAATTGGATCTGCCC 58.840 50.000 20.10 0.00 45.80 5.36
1683 1864 3.181425 CCCAGATTAATTGGATCTGCCCT 60.181 47.826 20.10 0.00 45.80 5.19
1684 1865 4.477249 CCAGATTAATTGGATCTGCCCTT 58.523 43.478 20.10 0.00 45.80 3.95
1685 1866 4.897670 CCAGATTAATTGGATCTGCCCTTT 59.102 41.667 20.10 0.00 45.80 3.11
1686 1867 5.364735 CCAGATTAATTGGATCTGCCCTTTT 59.635 40.000 20.10 0.00 45.80 2.27
1687 1868 6.278363 CAGATTAATTGGATCTGCCCTTTTG 58.722 40.000 16.09 0.00 42.68 2.44
1688 1869 5.364735 AGATTAATTGGATCTGCCCTTTTGG 59.635 40.000 5.62 0.00 32.79 3.28
1689 1870 9.517168 CAGATTAATTGGATCTGCCCTTTTGGG 62.517 44.444 16.09 0.00 45.66 4.12
1736 1917 8.918202 GCATATAGCATAGGATAGAGAGTAGT 57.082 38.462 0.00 0.00 44.79 2.73
1745 1926 9.787435 CATAGGATAGAGAGTAGTTAGTTCAGT 57.213 37.037 0.00 0.00 0.00 3.41
1750 1931 9.169592 GATAGAGAGTAGTTAGTTCAGTGAAGT 57.830 37.037 17.14 17.14 0.00 3.01
1751 1932 7.826918 AGAGAGTAGTTAGTTCAGTGAAGTT 57.173 36.000 18.11 6.77 0.00 2.66
1757 1938 8.038944 AGTAGTTAGTTCAGTGAAGTTTCAACA 58.961 33.333 18.11 5.92 39.21 3.33
1762 1943 7.396540 AGTTCAGTGAAGTTTCAACAAAGAT 57.603 32.000 5.62 0.00 39.21 2.40
1766 1947 6.150976 TCAGTGAAGTTTCAACAAAGATGTGT 59.849 34.615 0.00 0.00 40.46 3.72
1767 1948 6.252015 CAGTGAAGTTTCAACAAAGATGTGTG 59.748 38.462 0.00 0.00 40.46 3.82
1778 1960 3.692257 AAGATGTGTGGAGAAGTGAGG 57.308 47.619 0.00 0.00 0.00 3.86
1877 2061 2.182827 TCAAGGTGAGATGTCAGAGGG 58.817 52.381 0.00 0.00 31.53 4.30
1880 2064 0.618968 GGTGAGATGTCAGAGGGGGT 60.619 60.000 0.00 0.00 31.53 4.95
1884 2068 4.223953 GTGAGATGTCAGAGGGGGTATTA 58.776 47.826 0.00 0.00 31.53 0.98
1890 2074 2.973406 GTCAGAGGGGGTATTAGGAAGG 59.027 54.545 0.00 0.00 0.00 3.46
1891 2075 2.090153 TCAGAGGGGGTATTAGGAAGGG 60.090 54.545 0.00 0.00 0.00 3.95
1918 2102 3.537874 GCGGGATGCCGAGTACCT 61.538 66.667 31.38 0.00 37.76 3.08
1954 2138 3.410098 GTCTGAGACGGCAGAAGTC 57.590 57.895 0.00 0.00 45.69 3.01
1955 2139 0.109039 GTCTGAGACGGCAGAAGTCC 60.109 60.000 0.00 0.00 45.69 3.85
1959 2146 0.820871 GAGACGGCAGAAGTCCTGAT 59.179 55.000 0.00 0.00 45.78 2.90
1983 2477 3.355270 CGTCGTTCTGTATGAGTGCTAG 58.645 50.000 0.00 0.00 0.00 3.42
1996 2490 1.136500 AGTGCTAGCCGGTTAGTTAGC 59.864 52.381 24.19 14.59 39.11 3.09
2015 2953 2.567169 AGCTAGGTGCATGTGAGTTGTA 59.433 45.455 0.00 0.00 45.94 2.41
2041 2979 8.375608 AGCTATCTTAATGCATGAGTTGTTAG 57.624 34.615 0.00 4.58 0.00 2.34
2042 2980 7.041508 AGCTATCTTAATGCATGAGTTGTTAGC 60.042 37.037 0.00 12.39 0.00 3.09
2043 2981 7.041508 GCTATCTTAATGCATGAGTTGTTAGCT 60.042 37.037 0.00 0.00 0.00 3.32
2044 2982 9.481340 CTATCTTAATGCATGAGTTGTTAGCTA 57.519 33.333 0.00 0.00 0.00 3.32
2045 2983 8.915057 ATCTTAATGCATGAGTTGTTAGCTAT 57.085 30.769 0.00 0.00 0.00 2.97
2046 2984 8.370493 TCTTAATGCATGAGTTGTTAGCTATC 57.630 34.615 0.00 0.00 0.00 2.08
2047 2985 8.206867 TCTTAATGCATGAGTTGTTAGCTATCT 58.793 33.333 0.00 0.00 0.00 1.98
2048 2986 8.737168 TTAATGCATGAGTTGTTAGCTATCTT 57.263 30.769 0.00 0.00 0.00 2.40
2049 2987 9.830975 TTAATGCATGAGTTGTTAGCTATCTTA 57.169 29.630 0.00 0.00 0.00 2.10
2050 2988 7.959689 ATGCATGAGTTGTTAGCTATCTTAG 57.040 36.000 0.00 0.00 0.00 2.18
2068 3006 3.635191 TGCGCATGGTCAGGTGGA 61.635 61.111 5.66 0.00 0.00 4.02
2100 3038 2.357034 GTGACGGACGTGGTGCAT 60.357 61.111 0.53 0.00 0.00 3.96
2101 3039 2.356913 TGACGGACGTGGTGCATG 60.357 61.111 0.53 0.00 0.00 4.06
2102 3040 3.788766 GACGGACGTGGTGCATGC 61.789 66.667 11.82 11.82 0.00 4.06
2105 3043 3.434319 GGACGTGGTGCATGCCTG 61.434 66.667 16.68 2.67 0.00 4.85
2115 3053 3.106738 GCATGCCTGCCTGATAAGT 57.893 52.632 6.36 0.00 42.88 2.24
2116 3054 1.396653 GCATGCCTGCCTGATAAGTT 58.603 50.000 6.36 0.00 42.88 2.66
2117 3055 2.575532 GCATGCCTGCCTGATAAGTTA 58.424 47.619 6.36 0.00 42.88 2.24
2118 3056 2.291741 GCATGCCTGCCTGATAAGTTAC 59.708 50.000 6.36 0.00 42.88 2.50
2119 3057 3.813443 CATGCCTGCCTGATAAGTTACT 58.187 45.455 0.00 0.00 0.00 2.24
2120 3058 4.202441 CATGCCTGCCTGATAAGTTACTT 58.798 43.478 2.32 2.32 0.00 2.24
2121 3059 5.368145 CATGCCTGCCTGATAAGTTACTTA 58.632 41.667 7.32 7.32 0.00 2.24
2122 3060 5.023533 TGCCTGCCTGATAAGTTACTTAG 57.976 43.478 10.69 0.00 29.02 2.18
2123 3061 4.141711 TGCCTGCCTGATAAGTTACTTAGG 60.142 45.833 10.69 9.15 29.02 2.69
2124 3062 4.743955 GCCTGCCTGATAAGTTACTTAGGG 60.744 50.000 10.69 12.27 29.02 3.53
2125 3063 4.381411 CTGCCTGATAAGTTACTTAGGGC 58.619 47.826 25.11 25.11 38.81 5.19
2126 3064 3.778075 TGCCTGATAAGTTACTTAGGGCA 59.222 43.478 27.94 27.94 42.00 5.36
2127 3065 4.412199 TGCCTGATAAGTTACTTAGGGCAT 59.588 41.667 27.94 9.94 40.83 4.40
2128 3066 5.104109 TGCCTGATAAGTTACTTAGGGCATT 60.104 40.000 27.94 8.57 40.83 3.56
2129 3067 5.828328 GCCTGATAAGTTACTTAGGGCATTT 59.172 40.000 26.02 6.73 38.53 2.32
2130 3068 6.017026 GCCTGATAAGTTACTTAGGGCATTTC 60.017 42.308 26.02 13.53 38.53 2.17
2131 3069 6.486993 CCTGATAAGTTACTTAGGGCATTTCC 59.513 42.308 10.69 0.00 29.02 3.13
2132 3070 6.964464 TGATAAGTTACTTAGGGCATTTCCA 58.036 36.000 10.69 0.00 36.21 3.53
2133 3071 7.054124 TGATAAGTTACTTAGGGCATTTCCAG 58.946 38.462 10.69 0.00 36.21 3.86
2134 3072 3.621558 AGTTACTTAGGGCATTTCCAGC 58.378 45.455 0.00 0.00 36.21 4.85
2150 3088 4.344865 GCCGTTGGCCCTTCAGGA 62.345 66.667 0.00 0.00 44.06 3.86
2151 3089 2.045926 CCGTTGGCCCTTCAGGAG 60.046 66.667 0.00 0.00 38.24 3.69
2152 3090 2.747855 CGTTGGCCCTTCAGGAGC 60.748 66.667 0.00 0.00 38.24 4.70
2153 3091 2.747855 GTTGGCCCTTCAGGAGCG 60.748 66.667 0.00 0.00 38.24 5.03
2154 3092 3.249189 TTGGCCCTTCAGGAGCGT 61.249 61.111 0.00 0.00 38.24 5.07
2155 3093 3.254024 TTGGCCCTTCAGGAGCGTC 62.254 63.158 0.00 0.00 38.24 5.19
2156 3094 3.394836 GGCCCTTCAGGAGCGTCT 61.395 66.667 0.00 0.00 38.24 4.18
2157 3095 2.058595 GGCCCTTCAGGAGCGTCTA 61.059 63.158 0.00 0.00 38.24 2.59
2158 3096 1.614241 GGCCCTTCAGGAGCGTCTAA 61.614 60.000 0.00 0.00 38.24 2.10
2159 3097 0.249398 GCCCTTCAGGAGCGTCTAAA 59.751 55.000 0.00 0.00 38.24 1.85
2160 3098 1.338769 GCCCTTCAGGAGCGTCTAAAA 60.339 52.381 0.00 0.00 38.24 1.52
2161 3099 2.622436 CCCTTCAGGAGCGTCTAAAAG 58.378 52.381 0.00 0.00 38.24 2.27
2162 3100 2.003301 CCTTCAGGAGCGTCTAAAAGC 58.997 52.381 0.00 0.00 37.39 3.51
2163 3101 1.656095 CTTCAGGAGCGTCTAAAAGCG 59.344 52.381 0.00 0.00 38.61 4.68
2168 3106 4.516135 GCGTCTAAAAGCGCCGCC 62.516 66.667 4.98 0.00 46.93 6.13
2169 3107 2.813908 CGTCTAAAAGCGCCGCCT 60.814 61.111 4.98 0.00 0.00 5.52
2170 3108 2.785258 GTCTAAAAGCGCCGCCTG 59.215 61.111 4.98 0.00 0.00 4.85
2171 3109 2.435938 TCTAAAAGCGCCGCCTGG 60.436 61.111 4.98 0.00 38.77 4.45
2172 3110 3.508840 CTAAAAGCGCCGCCTGGG 61.509 66.667 4.98 0.00 39.58 4.45
2187 3125 4.483243 GGGGATGAGCCGGCGAAA 62.483 66.667 23.20 11.37 37.63 3.46
2188 3126 2.437716 GGGATGAGCCGGCGAAAA 60.438 61.111 23.20 8.45 37.63 2.29
2189 3127 2.043980 GGGATGAGCCGGCGAAAAA 61.044 57.895 23.20 6.40 37.63 1.94
2221 3159 3.083997 GAGTCGGTCCCCAGCCAT 61.084 66.667 0.00 0.00 0.00 4.40
2222 3160 3.083997 AGTCGGTCCCCAGCCATC 61.084 66.667 0.00 0.00 0.00 3.51
2223 3161 4.530857 GTCGGTCCCCAGCCATCG 62.531 72.222 0.00 0.00 0.00 3.84
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.779759 TCCTGTGTTTGTTGTCAATTGC 58.220 40.909 0.00 0.00 33.32 3.56
3 4 4.097741 TCCTCCTGTGTTTGTTGTCAATTG 59.902 41.667 0.00 0.00 33.32 2.32
4 5 4.277476 TCCTCCTGTGTTTGTTGTCAATT 58.723 39.130 0.00 0.00 33.32 2.32
5 6 3.897239 TCCTCCTGTGTTTGTTGTCAAT 58.103 40.909 0.00 0.00 33.32 2.57
6 7 3.358111 TCCTCCTGTGTTTGTTGTCAA 57.642 42.857 0.00 0.00 0.00 3.18
7 8 3.013921 GTTCCTCCTGTGTTTGTTGTCA 58.986 45.455 0.00 0.00 0.00 3.58
8 9 3.013921 TGTTCCTCCTGTGTTTGTTGTC 58.986 45.455 0.00 0.00 0.00 3.18
9 10 3.080300 TGTTCCTCCTGTGTTTGTTGT 57.920 42.857 0.00 0.00 0.00 3.32
10 11 3.734902 GCTTGTTCCTCCTGTGTTTGTTG 60.735 47.826 0.00 0.00 0.00 3.33
11 12 2.427095 GCTTGTTCCTCCTGTGTTTGTT 59.573 45.455 0.00 0.00 0.00 2.83
12 13 2.024414 GCTTGTTCCTCCTGTGTTTGT 58.976 47.619 0.00 0.00 0.00 2.83
13 14 1.338020 GGCTTGTTCCTCCTGTGTTTG 59.662 52.381 0.00 0.00 0.00 2.93
14 15 1.215423 AGGCTTGTTCCTCCTGTGTTT 59.785 47.619 0.00 0.00 0.00 2.83
15 16 0.846693 AGGCTTGTTCCTCCTGTGTT 59.153 50.000 0.00 0.00 0.00 3.32
16 17 0.846693 AAGGCTTGTTCCTCCTGTGT 59.153 50.000 0.00 0.00 34.82 3.72
17 18 1.202806 TCAAGGCTTGTTCCTCCTGTG 60.203 52.381 25.39 0.00 34.82 3.66
18 19 1.140312 TCAAGGCTTGTTCCTCCTGT 58.860 50.000 25.39 0.00 34.82 4.00
19 20 2.026449 AGATCAAGGCTTGTTCCTCCTG 60.026 50.000 26.68 3.03 34.82 3.86
20 21 2.273619 AGATCAAGGCTTGTTCCTCCT 58.726 47.619 26.68 11.73 34.82 3.69
21 22 2.797177 AGATCAAGGCTTGTTCCTCC 57.203 50.000 26.68 9.75 34.82 4.30
22 23 5.007136 CGAAATAGATCAAGGCTTGTTCCTC 59.993 44.000 26.68 18.60 34.82 3.71
23 24 4.878397 CGAAATAGATCAAGGCTTGTTCCT 59.122 41.667 26.68 21.76 38.31 3.36
24 25 4.876107 TCGAAATAGATCAAGGCTTGTTCC 59.124 41.667 26.68 17.22 31.31 3.62
25 26 5.812642 TCTCGAAATAGATCAAGGCTTGTTC 59.187 40.000 25.39 24.77 0.00 3.18
26 27 5.734720 TCTCGAAATAGATCAAGGCTTGTT 58.265 37.500 25.39 18.21 0.00 2.83
27 28 5.344743 TCTCGAAATAGATCAAGGCTTGT 57.655 39.130 25.39 13.72 0.00 3.16
28 29 5.236047 CCTTCTCGAAATAGATCAAGGCTTG 59.764 44.000 21.17 21.17 0.00 4.01
29 30 5.363939 CCTTCTCGAAATAGATCAAGGCTT 58.636 41.667 0.00 0.00 0.00 4.35
30 31 4.202305 CCCTTCTCGAAATAGATCAAGGCT 60.202 45.833 0.00 0.00 32.66 4.58
31 32 4.061596 CCCTTCTCGAAATAGATCAAGGC 58.938 47.826 0.00 0.00 32.66 4.35
32 33 5.053145 CACCCTTCTCGAAATAGATCAAGG 58.947 45.833 0.00 0.00 33.28 3.61
33 34 5.907207 TCACCCTTCTCGAAATAGATCAAG 58.093 41.667 0.00 0.00 0.00 3.02
34 35 5.932619 TCACCCTTCTCGAAATAGATCAA 57.067 39.130 0.00 0.00 0.00 2.57
35 36 5.395324 GGTTCACCCTTCTCGAAATAGATCA 60.395 44.000 0.00 0.00 0.00 2.92
36 37 5.051153 GGTTCACCCTTCTCGAAATAGATC 58.949 45.833 0.00 0.00 0.00 2.75
37 38 4.717280 AGGTTCACCCTTCTCGAAATAGAT 59.283 41.667 0.00 0.00 42.73 1.98
38 39 4.094476 AGGTTCACCCTTCTCGAAATAGA 58.906 43.478 0.00 0.00 42.73 1.98
39 40 4.434520 GAGGTTCACCCTTCTCGAAATAG 58.565 47.826 0.00 0.00 46.51 1.73
40 41 3.119245 CGAGGTTCACCCTTCTCGAAATA 60.119 47.826 5.78 0.00 46.51 1.40
41 42 2.353803 CGAGGTTCACCCTTCTCGAAAT 60.354 50.000 5.78 0.00 46.51 2.17
42 43 1.000506 CGAGGTTCACCCTTCTCGAAA 59.999 52.381 5.78 0.00 46.51 3.46
43 44 0.601558 CGAGGTTCACCCTTCTCGAA 59.398 55.000 5.78 0.00 46.51 3.71
44 45 1.874345 GCGAGGTTCACCCTTCTCGA 61.874 60.000 14.50 0.00 46.51 4.04
45 46 1.446272 GCGAGGTTCACCCTTCTCG 60.446 63.158 7.15 7.15 46.51 4.04
46 47 0.390472 CAGCGAGGTTCACCCTTCTC 60.390 60.000 0.00 0.00 46.51 2.87
47 48 1.122019 ACAGCGAGGTTCACCCTTCT 61.122 55.000 0.00 0.00 46.51 2.85
48 49 0.951040 CACAGCGAGGTTCACCCTTC 60.951 60.000 0.00 0.00 46.51 3.46
49 50 1.071471 CACAGCGAGGTTCACCCTT 59.929 57.895 0.00 0.00 46.51 3.95
51 52 2.185310 ATCCACAGCGAGGTTCACCC 62.185 60.000 0.00 0.00 36.42 4.61
52 53 0.321653 AATCCACAGCGAGGTTCACC 60.322 55.000 0.00 0.00 0.00 4.02
53 54 2.000447 GTAATCCACAGCGAGGTTCAC 59.000 52.381 0.00 0.00 0.00 3.18
54 55 1.899814 AGTAATCCACAGCGAGGTTCA 59.100 47.619 0.00 0.00 0.00 3.18
55 56 2.094182 TCAGTAATCCACAGCGAGGTTC 60.094 50.000 0.00 0.00 0.00 3.62
56 57 1.899814 TCAGTAATCCACAGCGAGGTT 59.100 47.619 0.00 0.00 0.00 3.50
57 58 1.557099 TCAGTAATCCACAGCGAGGT 58.443 50.000 0.00 0.00 0.00 3.85
58 59 2.271800 GTTCAGTAATCCACAGCGAGG 58.728 52.381 0.00 0.00 0.00 4.63
59 60 2.271800 GGTTCAGTAATCCACAGCGAG 58.728 52.381 0.00 0.00 0.00 5.03
60 61 1.403647 CGGTTCAGTAATCCACAGCGA 60.404 52.381 0.00 0.00 0.00 4.93
61 62 0.999406 CGGTTCAGTAATCCACAGCG 59.001 55.000 0.00 0.00 0.00 5.18
62 63 2.000447 GTCGGTTCAGTAATCCACAGC 59.000 52.381 0.00 0.00 0.00 4.40
63 64 3.313012 TGTCGGTTCAGTAATCCACAG 57.687 47.619 0.00 0.00 0.00 3.66
64 65 3.755112 TTGTCGGTTCAGTAATCCACA 57.245 42.857 0.00 0.00 0.00 4.17
65 66 4.092968 GTCATTGTCGGTTCAGTAATCCAC 59.907 45.833 0.00 0.00 0.00 4.02
66 67 4.250464 GTCATTGTCGGTTCAGTAATCCA 58.750 43.478 0.00 0.00 0.00 3.41
67 68 3.621715 GGTCATTGTCGGTTCAGTAATCC 59.378 47.826 0.00 0.00 0.00 3.01
68 69 3.621715 GGGTCATTGTCGGTTCAGTAATC 59.378 47.826 0.00 0.00 0.00 1.75
69 70 3.008594 TGGGTCATTGTCGGTTCAGTAAT 59.991 43.478 0.00 0.00 0.00 1.89
70 71 2.369203 TGGGTCATTGTCGGTTCAGTAA 59.631 45.455 0.00 0.00 0.00 2.24
71 72 1.972075 TGGGTCATTGTCGGTTCAGTA 59.028 47.619 0.00 0.00 0.00 2.74
72 73 0.762418 TGGGTCATTGTCGGTTCAGT 59.238 50.000 0.00 0.00 0.00 3.41
73 74 1.156736 GTGGGTCATTGTCGGTTCAG 58.843 55.000 0.00 0.00 0.00 3.02
74 75 0.762418 AGTGGGTCATTGTCGGTTCA 59.238 50.000 0.00 0.00 0.00 3.18
75 76 1.892209 AAGTGGGTCATTGTCGGTTC 58.108 50.000 0.00 0.00 0.00 3.62
76 77 2.635915 TCTAAGTGGGTCATTGTCGGTT 59.364 45.455 0.00 0.00 0.00 4.44
77 78 2.253610 TCTAAGTGGGTCATTGTCGGT 58.746 47.619 0.00 0.00 0.00 4.69
78 79 3.262420 CTTCTAAGTGGGTCATTGTCGG 58.738 50.000 0.00 0.00 0.00 4.79
83 84 5.126707 CCTACGTACTTCTAAGTGGGTCATT 59.873 44.000 5.62 0.00 40.07 2.57
104 105 2.740826 GCGTTGTTGGCGAGCCTA 60.741 61.111 15.75 4.76 36.94 3.93
153 154 2.786495 CCGTGGTCCGATCTCCTGG 61.786 68.421 0.00 0.00 39.56 4.45
157 158 2.202566 GAAAATCCGTGGTCCGATCTC 58.797 52.381 0.00 0.00 39.56 2.75
199 200 4.941873 GGAGAAGTTACCTTGGGTTATGTG 59.058 45.833 0.00 0.00 37.09 3.21
200 201 4.600111 TGGAGAAGTTACCTTGGGTTATGT 59.400 41.667 0.00 0.00 37.09 2.29
261 263 4.570663 GCTCGACGGTCCCGATGG 62.571 72.222 13.54 1.12 42.83 3.51
290 292 1.372683 CCTGGTGGTCTGTGTCCAG 59.627 63.158 0.00 0.00 44.74 3.86
320 322 0.464452 GGACCCTCCGATGTGTTAGG 59.536 60.000 0.00 0.00 0.00 2.69
434 546 1.180029 TAGAGCTACGGTTGTGGTCC 58.820 55.000 0.00 0.00 0.00 4.46
436 548 3.097614 AGATTAGAGCTACGGTTGTGGT 58.902 45.455 0.00 0.00 0.00 4.16
445 557 8.604890 GTGTTATTTGTGGAAGATTAGAGCTAC 58.395 37.037 0.00 0.00 0.00 3.58
587 703 2.061028 CGGGCAGCACTTCAAATTTTC 58.939 47.619 0.00 0.00 0.00 2.29
607 723 6.997655 TGATCCACTACATCATGTCTTATCC 58.002 40.000 0.00 0.00 0.00 2.59
755 875 2.093553 ACATTGCACTTGTTTGCTGGTT 60.094 40.909 0.00 0.00 43.41 3.67
759 879 4.279169 AGTCATACATTGCACTTGTTTGCT 59.721 37.500 6.78 8.04 43.41 3.91
816 940 2.346766 TGGTGAGCATGACAACAAGT 57.653 45.000 8.27 0.00 31.79 3.16
887 1012 1.021968 CCTTGGGGCTACGTTAATGC 58.978 55.000 0.00 0.00 0.00 3.56
928 1053 8.665685 GCTGCATAGTATTTAAGCCGTATTATT 58.334 33.333 0.00 0.00 0.00 1.40
973 1098 1.883638 GCCTTGTTGGTGATCAGCTCA 60.884 52.381 24.30 19.29 38.35 4.26
988 1113 0.745845 CTTCCCATCGTCCTGCCTTG 60.746 60.000 0.00 0.00 0.00 3.61
990 1115 1.306141 TCTTCCCATCGTCCTGCCT 60.306 57.895 0.00 0.00 0.00 4.75
1032 1157 2.650116 CCCAGTCCTGTCTCCACCG 61.650 68.421 0.00 0.00 0.00 4.94
1038 1163 0.178958 ACGTCTTCCCAGTCCTGTCT 60.179 55.000 0.00 0.00 0.00 3.41
1077 1202 2.125753 GCTCTCTGCACCGTCCAG 60.126 66.667 0.00 0.00 42.31 3.86
1112 1237 1.593787 CAGACATCAGGCCTGTCGT 59.406 57.895 31.58 27.29 46.05 4.34
1116 1241 1.222936 GACCCAGACATCAGGCCTG 59.777 63.158 27.87 27.87 0.00 4.85
1203 1328 2.971660 TCACAACGACTCCAACTTCA 57.028 45.000 0.00 0.00 0.00 3.02
1208 1333 1.202604 GGGTCTTCACAACGACTCCAA 60.203 52.381 0.00 0.00 0.00 3.53
1232 1357 1.837051 TGGTAGCCCTAGCCGATGG 60.837 63.158 2.42 0.00 41.25 3.51
1287 1412 0.245539 GTGGGCACAACTACGCTCTA 59.754 55.000 0.00 0.00 0.00 2.43
1320 1446 4.497006 GGATGCAGCAACTTAGCACATTAG 60.497 45.833 3.51 0.00 41.60 1.73
1321 1447 3.378112 GGATGCAGCAACTTAGCACATTA 59.622 43.478 3.51 0.00 41.60 1.90
1429 1555 8.321353 GGGGAAAGATGAAAAGAAAAACCATAT 58.679 33.333 0.00 0.00 0.00 1.78
1432 1558 5.452636 CGGGGAAAGATGAAAAGAAAAACCA 60.453 40.000 0.00 0.00 0.00 3.67
1495 1623 8.268850 AGTGACGAAAGCAAACTAAATATGAT 57.731 30.769 0.00 0.00 0.00 2.45
1496 1624 7.667043 AGTGACGAAAGCAAACTAAATATGA 57.333 32.000 0.00 0.00 0.00 2.15
1570 1751 9.825972 GTGCTAATCATATAATAACACGCAAAT 57.174 29.630 0.00 0.00 0.00 2.32
1574 1755 8.018677 AGTGTGCTAATCATATAATAACACGC 57.981 34.615 0.00 0.00 40.14 5.34
1597 1778 1.137513 GAGCGCTGAACACGTTTAGT 58.862 50.000 18.48 0.00 0.00 2.24
1598 1779 0.091344 CGAGCGCTGAACACGTTTAG 59.909 55.000 18.48 0.00 0.00 1.85
1599 1780 0.318022 TCGAGCGCTGAACACGTTTA 60.318 50.000 18.48 0.00 0.00 2.01
1600 1781 1.590525 TCGAGCGCTGAACACGTTT 60.591 52.632 18.48 0.00 0.00 3.60
1601 1782 2.027024 TCGAGCGCTGAACACGTT 59.973 55.556 18.48 0.00 0.00 3.99
1602 1783 2.729862 GTCGAGCGCTGAACACGT 60.730 61.111 18.48 0.00 0.00 4.49
1603 1784 1.617755 AATGTCGAGCGCTGAACACG 61.618 55.000 18.48 12.69 0.00 4.49
1604 1785 1.346365 TAATGTCGAGCGCTGAACAC 58.654 50.000 18.48 6.13 0.00 3.32
1605 1786 2.073117 TTAATGTCGAGCGCTGAACA 57.927 45.000 18.48 19.58 0.00 3.18
1606 1787 2.784665 GCTTTAATGTCGAGCGCTGAAC 60.785 50.000 18.48 13.70 0.00 3.18
1607 1788 1.393539 GCTTTAATGTCGAGCGCTGAA 59.606 47.619 18.48 0.00 0.00 3.02
1608 1789 0.999406 GCTTTAATGTCGAGCGCTGA 59.001 50.000 18.48 10.41 0.00 4.26
1609 1790 0.721154 TGCTTTAATGTCGAGCGCTG 59.279 50.000 18.48 7.71 39.23 5.18
1610 1791 1.002366 CTGCTTTAATGTCGAGCGCT 58.998 50.000 11.27 11.27 39.23 5.92
1611 1792 0.721718 ACTGCTTTAATGTCGAGCGC 59.278 50.000 0.00 0.00 39.23 5.92
1612 1793 2.263077 AGACTGCTTTAATGTCGAGCG 58.737 47.619 0.00 0.00 39.23 5.03
1613 1794 3.799420 CCTAGACTGCTTTAATGTCGAGC 59.201 47.826 0.00 0.00 33.95 5.03
1614 1795 5.000012 ACCTAGACTGCTTTAATGTCGAG 58.000 43.478 0.00 0.00 36.01 4.04
1615 1796 4.438336 CGACCTAGACTGCTTTAATGTCGA 60.438 45.833 0.00 0.00 44.03 4.20
1616 1797 3.791887 CGACCTAGACTGCTTTAATGTCG 59.208 47.826 0.00 0.00 37.37 4.35
1617 1798 4.745649 ACGACCTAGACTGCTTTAATGTC 58.254 43.478 0.00 0.00 0.00 3.06
1618 1799 4.803098 ACGACCTAGACTGCTTTAATGT 57.197 40.909 0.00 0.00 0.00 2.71
1619 1800 5.168569 TCAACGACCTAGACTGCTTTAATG 58.831 41.667 0.00 0.00 0.00 1.90
1620 1801 5.401531 TCAACGACCTAGACTGCTTTAAT 57.598 39.130 0.00 0.00 0.00 1.40
1621 1802 4.859304 TCAACGACCTAGACTGCTTTAA 57.141 40.909 0.00 0.00 0.00 1.52
1622 1803 4.859304 TTCAACGACCTAGACTGCTTTA 57.141 40.909 0.00 0.00 0.00 1.85
1623 1804 3.746045 TTCAACGACCTAGACTGCTTT 57.254 42.857 0.00 0.00 0.00 3.51
1624 1805 3.963428 ATTCAACGACCTAGACTGCTT 57.037 42.857 0.00 0.00 0.00 3.91
1625 1806 3.963428 AATTCAACGACCTAGACTGCT 57.037 42.857 0.00 0.00 0.00 4.24
1626 1807 4.927425 TGTTAATTCAACGACCTAGACTGC 59.073 41.667 0.00 0.00 40.26 4.40
1627 1808 8.697846 TTATGTTAATTCAACGACCTAGACTG 57.302 34.615 0.00 0.00 40.26 3.51
1628 1809 9.886132 AATTATGTTAATTCAACGACCTAGACT 57.114 29.630 0.00 0.00 40.26 3.24
1636 1817 9.944663 GGCTATCAAATTATGTTAATTCAACGA 57.055 29.630 0.00 0.00 40.26 3.85
1637 1818 9.180678 GGGCTATCAAATTATGTTAATTCAACG 57.819 33.333 0.00 0.00 40.26 4.10
1640 1821 9.639563 TCTGGGCTATCAAATTATGTTAATTCA 57.360 29.630 0.00 0.00 0.00 2.57
1648 1829 9.865321 CCAATTAATCTGGGCTATCAAATTATG 57.135 33.333 8.14 0.00 0.00 1.90
1649 1830 9.827198 TCCAATTAATCTGGGCTATCAAATTAT 57.173 29.630 13.40 0.00 34.46 1.28
1650 1831 9.827198 ATCCAATTAATCTGGGCTATCAAATTA 57.173 29.630 13.40 0.00 34.46 1.40
1651 1832 8.731591 ATCCAATTAATCTGGGCTATCAAATT 57.268 30.769 13.40 0.00 34.46 1.82
1652 1833 8.175431 AGATCCAATTAATCTGGGCTATCAAAT 58.825 33.333 13.40 2.14 34.46 2.32
1653 1834 7.449395 CAGATCCAATTAATCTGGGCTATCAAA 59.551 37.037 16.81 0.00 44.16 2.69
1654 1835 6.944290 CAGATCCAATTAATCTGGGCTATCAA 59.056 38.462 16.81 0.00 44.16 2.57
1655 1836 6.479006 CAGATCCAATTAATCTGGGCTATCA 58.521 40.000 16.81 0.00 44.16 2.15
1656 1837 5.356470 GCAGATCCAATTAATCTGGGCTATC 59.644 44.000 22.19 10.33 46.68 2.08
1657 1838 5.259632 GCAGATCCAATTAATCTGGGCTAT 58.740 41.667 22.19 4.15 46.68 2.97
1658 1839 4.507335 GGCAGATCCAATTAATCTGGGCTA 60.507 45.833 22.19 0.53 46.68 3.93
1659 1840 3.494332 GCAGATCCAATTAATCTGGGCT 58.506 45.455 22.19 9.89 46.68 5.19
1660 1841 2.560105 GGCAGATCCAATTAATCTGGGC 59.440 50.000 22.19 13.71 46.68 5.36
1661 1842 3.160269 GGGCAGATCCAATTAATCTGGG 58.840 50.000 22.19 5.87 46.68 4.45
1662 1843 4.109877 AGGGCAGATCCAATTAATCTGG 57.890 45.455 22.19 7.47 46.68 3.86
1664 1845 5.364735 CCAAAAGGGCAGATCCAATTAATCT 59.635 40.000 0.00 0.00 36.21 2.40
1665 1846 5.453762 CCCAAAAGGGCAGATCCAATTAATC 60.454 44.000 0.00 0.00 36.21 1.75
1666 1847 4.409901 CCCAAAAGGGCAGATCCAATTAAT 59.590 41.667 0.00 0.00 36.21 1.40
1667 1848 3.774216 CCCAAAAGGGCAGATCCAATTAA 59.226 43.478 0.00 0.00 36.21 1.40
1668 1849 3.245948 ACCCAAAAGGGCAGATCCAATTA 60.246 43.478 0.00 0.00 41.63 1.40
1669 1850 2.190538 CCCAAAAGGGCAGATCCAATT 58.809 47.619 0.00 0.00 36.21 2.32
1670 1851 1.079323 ACCCAAAAGGGCAGATCCAAT 59.921 47.619 0.00 0.00 41.63 3.16
1671 1852 0.486879 ACCCAAAAGGGCAGATCCAA 59.513 50.000 0.00 0.00 41.63 3.53
1672 1853 0.039618 GACCCAAAAGGGCAGATCCA 59.960 55.000 0.00 0.00 46.95 3.41
1673 1854 2.887790 GACCCAAAAGGGCAGATCC 58.112 57.895 0.00 0.00 46.95 3.36
1716 1897 9.947433 GAACTAACTACTCTCTATCCTATGCTA 57.053 37.037 0.00 0.00 0.00 3.49
1736 1917 8.330466 TCTTTGTTGAAACTTCACTGAACTAA 57.670 30.769 0.00 0.00 36.83 2.24
1741 1922 6.150976 ACACATCTTTGTTGAAACTTCACTGA 59.849 34.615 0.00 0.00 36.83 3.41
1745 1926 5.417266 TCCACACATCTTTGTTGAAACTTCA 59.583 36.000 0.00 0.00 32.34 3.02
1750 1931 5.652014 ACTTCTCCACACATCTTTGTTGAAA 59.348 36.000 0.00 0.00 32.34 2.69
1751 1932 5.066375 CACTTCTCCACACATCTTTGTTGAA 59.934 40.000 0.00 0.00 32.34 2.69
1757 1938 3.392616 ACCTCACTTCTCCACACATCTTT 59.607 43.478 0.00 0.00 0.00 2.52
1762 1943 0.106708 GCACCTCACTTCTCCACACA 59.893 55.000 0.00 0.00 0.00 3.72
1766 1947 2.171840 GTCTAGCACCTCACTTCTCCA 58.828 52.381 0.00 0.00 0.00 3.86
1767 1948 1.478916 GGTCTAGCACCTCACTTCTCC 59.521 57.143 4.62 0.00 42.84 3.71
1853 2037 5.355596 CCTCTGACATCTCACCTTGATTAC 58.644 45.833 0.00 0.00 0.00 1.89
1857 2041 2.182827 CCCTCTGACATCTCACCTTGA 58.817 52.381 0.00 0.00 0.00 3.02
1877 2061 3.390819 TCCAAGTCCCTTCCTAATACCC 58.609 50.000 0.00 0.00 0.00 3.69
1880 2064 3.394606 GCCATCCAAGTCCCTTCCTAATA 59.605 47.826 0.00 0.00 0.00 0.98
1884 2068 1.915078 CGCCATCCAAGTCCCTTCCT 61.915 60.000 0.00 0.00 0.00 3.36
1890 2074 1.526917 CATCCCGCCATCCAAGTCC 60.527 63.158 0.00 0.00 0.00 3.85
1891 2075 2.189499 GCATCCCGCCATCCAAGTC 61.189 63.158 0.00 0.00 32.94 3.01
1945 2129 4.232310 GGCATCAGGACTTCTGCC 57.768 61.111 6.25 6.25 46.54 4.85
1951 2135 1.215647 GAACGACGGCATCAGGACT 59.784 57.895 0.00 0.00 0.00 3.85
1953 2137 1.215382 CAGAACGACGGCATCAGGA 59.785 57.895 0.00 0.00 0.00 3.86
1954 2138 0.172578 TACAGAACGACGGCATCAGG 59.827 55.000 0.00 0.00 0.00 3.86
1955 2139 1.854743 CATACAGAACGACGGCATCAG 59.145 52.381 0.00 0.00 0.00 2.90
1959 2146 0.885879 ACTCATACAGAACGACGGCA 59.114 50.000 0.00 0.00 0.00 5.69
1983 2477 1.805495 GCACCTAGCTAACTAACCGGC 60.805 57.143 0.00 0.00 41.15 6.13
1996 2490 3.372206 GCTTACAACTCACATGCACCTAG 59.628 47.826 0.00 0.00 0.00 3.02
2000 2494 4.872691 AGATAGCTTACAACTCACATGCAC 59.127 41.667 0.00 0.00 0.00 4.57
2015 2953 7.636150 AACAACTCATGCATTAAGATAGCTT 57.364 32.000 11.85 0.00 38.15 3.74
2041 2979 1.795286 GACCATGCGCACTAAGATAGC 59.205 52.381 14.90 0.00 0.00 2.97
2042 2980 3.055591 CTGACCATGCGCACTAAGATAG 58.944 50.000 14.90 1.51 0.00 2.08
2043 2981 2.224042 CCTGACCATGCGCACTAAGATA 60.224 50.000 14.90 0.00 0.00 1.98
2044 2982 1.473965 CCTGACCATGCGCACTAAGAT 60.474 52.381 14.90 0.00 0.00 2.40
2045 2983 0.108186 CCTGACCATGCGCACTAAGA 60.108 55.000 14.90 0.00 0.00 2.10
2046 2984 0.391661 ACCTGACCATGCGCACTAAG 60.392 55.000 14.90 6.32 0.00 2.18
2047 2985 0.673333 CACCTGACCATGCGCACTAA 60.673 55.000 14.90 0.00 0.00 2.24
2048 2986 1.079197 CACCTGACCATGCGCACTA 60.079 57.895 14.90 0.00 0.00 2.74
2049 2987 2.359107 CACCTGACCATGCGCACT 60.359 61.111 14.90 0.00 0.00 4.40
2050 2988 3.434319 CCACCTGACCATGCGCAC 61.434 66.667 14.90 0.00 0.00 5.34
2068 3006 0.249911 GTCACTTCTCAACGGCCACT 60.250 55.000 2.24 0.00 0.00 4.00
2100 3038 4.141711 CCTAAGTAACTTATCAGGCAGGCA 60.142 45.833 0.00 0.00 0.00 4.75
2101 3039 4.381411 CCTAAGTAACTTATCAGGCAGGC 58.619 47.826 0.00 0.00 0.00 4.85
2102 3040 4.743955 GCCCTAAGTAACTTATCAGGCAGG 60.744 50.000 0.71 0.00 36.93 4.85
2103 3041 4.141711 TGCCCTAAGTAACTTATCAGGCAG 60.142 45.833 10.91 0.00 39.40 4.85
2104 3042 3.778075 TGCCCTAAGTAACTTATCAGGCA 59.222 43.478 10.91 10.91 40.65 4.75
2105 3043 4.417426 TGCCCTAAGTAACTTATCAGGC 57.583 45.455 0.00 0.00 37.20 4.85
2106 3044 6.486993 GGAAATGCCCTAAGTAACTTATCAGG 59.513 42.308 0.00 0.00 0.00 3.86
2107 3045 7.054124 TGGAAATGCCCTAAGTAACTTATCAG 58.946 38.462 0.00 0.00 34.97 2.90
2108 3046 6.964464 TGGAAATGCCCTAAGTAACTTATCA 58.036 36.000 0.00 0.00 34.97 2.15
2109 3047 6.017026 GCTGGAAATGCCCTAAGTAACTTATC 60.017 42.308 0.00 0.00 34.97 1.75
2110 3048 5.828328 GCTGGAAATGCCCTAAGTAACTTAT 59.172 40.000 0.00 0.00 34.97 1.73
2111 3049 5.190677 GCTGGAAATGCCCTAAGTAACTTA 58.809 41.667 0.00 0.00 34.97 2.24
2112 3050 4.017126 GCTGGAAATGCCCTAAGTAACTT 58.983 43.478 0.00 0.00 34.97 2.66
2113 3051 3.621558 GCTGGAAATGCCCTAAGTAACT 58.378 45.455 0.00 0.00 34.97 2.24
2114 3052 2.688446 GGCTGGAAATGCCCTAAGTAAC 59.312 50.000 0.00 0.00 44.32 2.50
2115 3053 3.012934 GGCTGGAAATGCCCTAAGTAA 57.987 47.619 0.00 0.00 44.32 2.24
2116 3054 2.729028 GGCTGGAAATGCCCTAAGTA 57.271 50.000 0.00 0.00 44.32 2.24
2117 3055 3.596362 GGCTGGAAATGCCCTAAGT 57.404 52.632 0.00 0.00 44.32 2.24
2134 3072 2.045926 CTCCTGAAGGGCCAACGG 60.046 66.667 6.18 3.88 35.41 4.44
2135 3073 2.747855 GCTCCTGAAGGGCCAACG 60.748 66.667 6.18 0.00 35.41 4.10
2136 3074 2.747855 CGCTCCTGAAGGGCCAAC 60.748 66.667 6.18 0.00 35.41 3.77
2137 3075 3.249189 ACGCTCCTGAAGGGCCAA 61.249 61.111 6.18 0.00 41.54 4.52
2138 3076 2.798445 TAGACGCTCCTGAAGGGCCA 62.798 60.000 6.18 0.00 41.54 5.36
2139 3077 1.614241 TTAGACGCTCCTGAAGGGCC 61.614 60.000 0.00 0.00 41.54 5.80
2140 3078 0.249398 TTTAGACGCTCCTGAAGGGC 59.751 55.000 0.00 0.00 41.54 5.19
2141 3079 2.622436 CTTTTAGACGCTCCTGAAGGG 58.378 52.381 0.00 0.00 43.40 3.95
2142 3080 2.003301 GCTTTTAGACGCTCCTGAAGG 58.997 52.381 0.00 0.00 0.00 3.46
2143 3081 1.656095 CGCTTTTAGACGCTCCTGAAG 59.344 52.381 0.00 0.00 0.00 3.02
2144 3082 1.710013 CGCTTTTAGACGCTCCTGAA 58.290 50.000 0.00 0.00 0.00 3.02
2145 3083 3.418675 CGCTTTTAGACGCTCCTGA 57.581 52.632 0.00 0.00 0.00 3.86
2152 3090 2.813908 AGGCGGCGCTTTTAGACG 60.814 61.111 32.30 0.56 0.00 4.18
2153 3091 2.750888 CCAGGCGGCGCTTTTAGAC 61.751 63.158 32.30 13.09 0.00 2.59
2154 3092 2.435938 CCAGGCGGCGCTTTTAGA 60.436 61.111 32.30 0.00 0.00 2.10
2155 3093 3.508840 CCCAGGCGGCGCTTTTAG 61.509 66.667 32.30 14.75 0.00 1.85
2170 3108 3.987954 TTTTCGCCGGCTCATCCCC 62.988 63.158 26.68 0.00 0.00 4.81
2171 3109 2.043980 TTTTTCGCCGGCTCATCCC 61.044 57.895 26.68 0.00 0.00 3.85
2172 3110 3.585856 TTTTTCGCCGGCTCATCC 58.414 55.556 26.68 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.