Multiple sequence alignment - TraesCS1A01G022100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G022100 chr1A 100.000 2216 0 0 1 2216 10695702 10697917 0.000000e+00 4093
1 TraesCS1A01G022100 chr1A 94.303 509 29 0 1 509 365645146 365645654 0.000000e+00 780
2 TraesCS1A01G022100 chr1A 82.243 321 37 13 901 1216 10716065 10715760 2.180000e-65 259
3 TraesCS1A01G022100 chr1B 88.796 1312 99 16 510 1799 13009383 13010668 0.000000e+00 1565
4 TraesCS1A01G022100 chr1B 89.881 1008 74 11 793 1799 13497262 13498242 0.000000e+00 1271
5 TraesCS1A01G022100 chr1B 89.581 835 54 14 511 1322 12491465 12492289 0.000000e+00 1029
6 TraesCS1A01G022100 chr1B 89.461 835 55 14 511 1322 12561528 12562352 0.000000e+00 1024
7 TraesCS1A01G022100 chr1B 90.316 475 36 9 1314 1785 12492478 12492945 4.040000e-172 614
8 TraesCS1A01G022100 chr1B 89.895 475 38 9 1314 1785 12562541 12563008 8.750000e-169 603
9 TraesCS1A01G022100 chr1B 76.613 868 141 41 518 1339 13565600 13564749 2.630000e-114 422
10 TraesCS1A01G022100 chr1B 83.831 402 53 6 1800 2196 133514394 133514788 2.690000e-99 372
11 TraesCS1A01G022100 chr4A 96.101 513 20 0 1 513 578180593 578180081 0.000000e+00 837
12 TraesCS1A01G022100 chr5A 95.183 519 24 1 1 518 33923277 33923795 0.000000e+00 819
13 TraesCS1A01G022100 chr5A 95.266 507 24 0 3 509 524707731 524708237 0.000000e+00 804
14 TraesCS1A01G022100 chr6A 95.010 521 23 2 1 518 494439236 494439756 0.000000e+00 815
15 TraesCS1A01G022100 chr6A 93.320 509 34 0 1 509 184592097 184591589 0.000000e+00 752
16 TraesCS1A01G022100 chr6D 93.654 520 28 4 2 517 97818061 97817543 0.000000e+00 773
17 TraesCS1A01G022100 chr2A 93.910 509 31 0 1 509 614231813 614232321 0.000000e+00 769
18 TraesCS1A01G022100 chr2A 85.408 233 27 3 1966 2195 18625084 18624856 3.680000e-58 235
19 TraesCS1A01G022100 chr5B 93.333 510 31 3 1 509 62147577 62147070 0.000000e+00 750
20 TraesCS1A01G022100 chr1D 83.075 839 104 16 970 1799 9426806 9427615 0.000000e+00 728
21 TraesCS1A01G022100 chr1D 77.158 753 110 40 512 1216 9425635 9426373 4.470000e-102 381
22 TraesCS1A01G022100 chr1D 84.524 336 35 10 1067 1394 9402120 9402446 1.280000e-82 316
23 TraesCS1A01G022100 chr5D 86.650 397 43 4 1800 2193 518914854 518915243 4.370000e-117 431
24 TraesCS1A01G022100 chr5D 80.660 212 37 2 1803 2013 518916749 518916541 6.330000e-36 161
25 TraesCS1A01G022100 chr2D 85.101 396 50 6 1803 2195 17160579 17160190 1.590000e-106 396
26 TraesCS1A01G022100 chrUn 84.962 399 48 7 1803 2196 74829833 74829442 5.740000e-106 394
27 TraesCS1A01G022100 chr3A 83.251 406 56 7 1794 2195 58825440 58825837 1.620000e-96 363
28 TraesCS1A01G022100 chr3A 84.227 317 40 5 1803 2117 714296650 714296342 1.290000e-77 300
29 TraesCS1A01G022100 chr7A 82.206 399 58 9 1803 2196 149421509 149421119 4.560000e-87 331
30 TraesCS1A01G022100 chr7D 87.500 176 19 1 2024 2196 42219158 42219333 1.340000e-47 200
31 TraesCS1A01G022100 chr7B 78.367 245 43 6 1773 2013 730382746 730382984 1.370000e-32 150


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G022100 chr1A 10695702 10697917 2215 False 4093.0 4093 100.0000 1 2216 1 chr1A.!!$F1 2215
1 TraesCS1A01G022100 chr1A 365645146 365645654 508 False 780.0 780 94.3030 1 509 1 chr1A.!!$F2 508
2 TraesCS1A01G022100 chr1B 13009383 13010668 1285 False 1565.0 1565 88.7960 510 1799 1 chr1B.!!$F1 1289
3 TraesCS1A01G022100 chr1B 13497262 13498242 980 False 1271.0 1271 89.8810 793 1799 1 chr1B.!!$F2 1006
4 TraesCS1A01G022100 chr1B 12491465 12492945 1480 False 821.5 1029 89.9485 511 1785 2 chr1B.!!$F4 1274
5 TraesCS1A01G022100 chr1B 12561528 12563008 1480 False 813.5 1024 89.6780 511 1785 2 chr1B.!!$F5 1274
6 TraesCS1A01G022100 chr1B 13564749 13565600 851 True 422.0 422 76.6130 518 1339 1 chr1B.!!$R1 821
7 TraesCS1A01G022100 chr4A 578180081 578180593 512 True 837.0 837 96.1010 1 513 1 chr4A.!!$R1 512
8 TraesCS1A01G022100 chr5A 33923277 33923795 518 False 819.0 819 95.1830 1 518 1 chr5A.!!$F1 517
9 TraesCS1A01G022100 chr5A 524707731 524708237 506 False 804.0 804 95.2660 3 509 1 chr5A.!!$F2 506
10 TraesCS1A01G022100 chr6A 494439236 494439756 520 False 815.0 815 95.0100 1 518 1 chr6A.!!$F1 517
11 TraesCS1A01G022100 chr6A 184591589 184592097 508 True 752.0 752 93.3200 1 509 1 chr6A.!!$R1 508
12 TraesCS1A01G022100 chr6D 97817543 97818061 518 True 773.0 773 93.6540 2 517 1 chr6D.!!$R1 515
13 TraesCS1A01G022100 chr2A 614231813 614232321 508 False 769.0 769 93.9100 1 509 1 chr2A.!!$F1 508
14 TraesCS1A01G022100 chr5B 62147070 62147577 507 True 750.0 750 93.3330 1 509 1 chr5B.!!$R1 508
15 TraesCS1A01G022100 chr1D 9425635 9427615 1980 False 554.5 728 80.1165 512 1799 2 chr1D.!!$F2 1287

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
570 574 0.108756 GGCTGTCGAGGGTACAGTTC 60.109 60.0 5.25 0.0 45.01 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1933 2900 0.0293 CTTTGTCAGTGTTGCGGGTG 59.971 55.0 0.0 0.0 0.0 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 49 3.306613 CGTAGAAACCCTAGGAATCCCT 58.693 50.000 11.48 3.24 46.62 4.20
94 97 3.525545 GACGACCTAGACCCCCGC 61.526 72.222 0.00 0.00 0.00 6.13
112 115 3.210857 CCGACGAGGCAGAAAAAGA 57.789 52.632 0.00 0.00 0.00 2.52
267 270 0.906066 GGGGAGGAACAGGAGAGAAC 59.094 60.000 0.00 0.00 0.00 3.01
310 313 2.328639 GCGTTTCGAAAACGGCCA 59.671 55.556 24.02 0.00 43.25 5.36
509 513 5.616204 GCGCGACCACTTTTTAGATTTTAGT 60.616 40.000 12.10 0.00 0.00 2.24
546 550 6.530120 ACGAGTTAATATATGGTGGAATGCA 58.470 36.000 0.00 0.00 0.00 3.96
570 574 0.108756 GGCTGTCGAGGGTACAGTTC 60.109 60.000 5.25 0.00 45.01 3.01
627 631 8.892723 TCATATATAACTCACAAGGCAAGTTTG 58.107 33.333 0.00 0.00 35.08 2.93
671 685 7.449704 AGAAGGAAACAATCTAACTTTGCTCAT 59.550 33.333 0.00 0.00 0.00 2.90
698 712 1.813513 ATGTCCCAACTTTCGCTCAG 58.186 50.000 0.00 0.00 0.00 3.35
703 717 1.063806 CCAACTTTCGCTCAGAGACG 58.936 55.000 0.00 4.76 0.00 4.18
719 733 4.803088 CAGAGACGAAAACAAAATGCCAAA 59.197 37.500 0.00 0.00 0.00 3.28
871 905 1.315257 AACATTGGAGCATCACCCGC 61.315 55.000 0.00 0.00 36.25 6.13
955 1711 4.969196 CCACACCGCACGCAGAGT 62.969 66.667 0.00 0.00 0.00 3.24
1011 1770 3.758755 ACACACAAGATGAGCTCTGAA 57.241 42.857 16.19 0.00 33.29 3.02
1216 1975 1.218316 GTCCCTGTCGTTGGCTAGG 59.782 63.158 0.00 0.00 0.00 3.02
1219 1978 1.120530 CCCTGTCGTTGGCTAGGTAT 58.879 55.000 0.00 0.00 0.00 2.73
1260 2019 0.536006 GGCTACATGGCAGGGTGATC 60.536 60.000 3.46 0.00 41.37 2.92
1293 2055 4.619227 CGGGGCGGTTGGCGATAT 62.619 66.667 0.00 0.00 44.92 1.63
1294 2056 2.745037 GGGGCGGTTGGCGATATA 59.255 61.111 0.00 0.00 44.92 0.86
1295 2057 1.298667 GGGGCGGTTGGCGATATAT 59.701 57.895 0.00 0.00 44.92 0.86
1348 2307 6.423862 TGTTTGTATCGTTTTCTGTGCTTAC 58.576 36.000 0.00 0.00 0.00 2.34
1397 2360 5.950544 AGTGCTATGGTCCAGTATACAAA 57.049 39.130 5.50 0.00 0.00 2.83
1402 2365 8.094548 GTGCTATGGTCCAGTATACAAATCATA 58.905 37.037 5.50 5.52 0.00 2.15
1517 2481 9.258629 TCCCTTGTGAAAGAAAAATCATCATAT 57.741 29.630 0.00 0.00 0.00 1.78
1568 2532 5.247507 TGTTTTGGATCTATGCAAATCCG 57.752 39.130 16.78 0.00 45.33 4.18
1604 2570 3.300388 CAGTATAGAGCACCTTCCTGGA 58.700 50.000 0.00 0.00 39.71 3.86
1606 2572 1.799933 ATAGAGCACCTTCCTGGAGG 58.200 55.000 9.73 9.73 42.75 4.30
1634 2600 1.070445 CTGGCCATCTGATCCGGAC 59.930 63.158 6.12 0.90 0.00 4.79
1644 2610 2.045926 ATCCGGACTGTTGCTGCC 60.046 61.111 6.12 0.00 0.00 4.85
1652 2618 0.886490 ACTGTTGCTGCCTGTACTGC 60.886 55.000 0.00 0.00 35.29 4.40
1686 2652 6.500684 TTTCAGTGAGATTTGCTTGGATAC 57.499 37.500 0.00 0.00 0.00 2.24
1785 2752 6.899393 AGTCCTTTTCTCATGCATGTTAAA 57.101 33.333 25.43 21.49 0.00 1.52
1804 2771 8.105097 TGTTAAAGACATGGATTTTCGAATCA 57.895 30.769 0.00 0.00 32.00 2.57
1805 2772 8.572185 TGTTAAAGACATGGATTTTCGAATCAA 58.428 29.630 0.00 0.00 32.00 2.57
1806 2773 9.573133 GTTAAAGACATGGATTTTCGAATCAAT 57.427 29.630 0.00 0.00 0.00 2.57
1809 2776 9.573133 AAAGACATGGATTTTCGAATCAATTAC 57.427 29.630 0.00 0.00 0.00 1.89
1810 2777 8.279970 AGACATGGATTTTCGAATCAATTACA 57.720 30.769 0.00 1.50 0.00 2.41
1811 2778 8.184192 AGACATGGATTTTCGAATCAATTACAC 58.816 33.333 0.00 0.00 0.00 2.90
1812 2779 7.257722 ACATGGATTTTCGAATCAATTACACC 58.742 34.615 0.00 0.00 0.00 4.16
1813 2780 5.874831 TGGATTTTCGAATCAATTACACCG 58.125 37.500 0.00 0.00 0.00 4.94
1814 2781 5.163703 TGGATTTTCGAATCAATTACACCGG 60.164 40.000 0.00 0.00 0.00 5.28
1815 2782 5.163693 GGATTTTCGAATCAATTACACCGGT 60.164 40.000 0.00 0.00 0.00 5.28
1816 2783 4.671880 TTTCGAATCAATTACACCGGTG 57.328 40.909 32.83 32.83 0.00 4.94
1817 2784 2.623535 TCGAATCAATTACACCGGTGG 58.376 47.619 36.47 19.50 34.19 4.61
1818 2785 2.027929 TCGAATCAATTACACCGGTGGT 60.028 45.455 36.47 23.92 35.62 4.16
1827 2794 4.210158 ACCGGTGGTGCTAGAACT 57.790 55.556 6.12 0.00 32.98 3.01
1828 2795 2.448749 ACCGGTGGTGCTAGAACTT 58.551 52.632 6.12 0.00 32.98 2.66
1829 2796 0.034896 ACCGGTGGTGCTAGAACTTG 59.965 55.000 6.12 0.00 32.98 3.16
1830 2797 0.673644 CCGGTGGTGCTAGAACTTGG 60.674 60.000 0.00 0.00 0.00 3.61
1831 2798 1.298859 CGGTGGTGCTAGAACTTGGC 61.299 60.000 0.00 0.00 0.00 4.52
1832 2799 1.298859 GGTGGTGCTAGAACTTGGCG 61.299 60.000 0.00 0.00 0.00 5.69
1833 2800 0.602905 GTGGTGCTAGAACTTGGCGT 60.603 55.000 0.00 0.00 0.00 5.68
1834 2801 0.970640 TGGTGCTAGAACTTGGCGTA 59.029 50.000 0.00 0.00 0.00 4.42
1835 2802 1.345089 TGGTGCTAGAACTTGGCGTAA 59.655 47.619 0.00 0.00 0.00 3.18
1836 2803 2.224329 TGGTGCTAGAACTTGGCGTAAA 60.224 45.455 0.00 0.00 0.00 2.01
1837 2804 3.007635 GGTGCTAGAACTTGGCGTAAAT 58.992 45.455 0.00 0.00 0.00 1.40
1838 2805 3.181510 GGTGCTAGAACTTGGCGTAAATG 60.182 47.826 0.00 0.00 0.00 2.32
1839 2806 3.006940 TGCTAGAACTTGGCGTAAATGG 58.993 45.455 0.00 0.00 0.00 3.16
1840 2807 3.007635 GCTAGAACTTGGCGTAAATGGT 58.992 45.455 0.00 0.00 0.00 3.55
1841 2808 3.063588 GCTAGAACTTGGCGTAAATGGTC 59.936 47.826 0.00 0.00 0.00 4.02
1842 2809 3.134574 AGAACTTGGCGTAAATGGTCA 57.865 42.857 0.00 0.00 0.00 4.02
1843 2810 3.482436 AGAACTTGGCGTAAATGGTCAA 58.518 40.909 0.00 0.00 0.00 3.18
1844 2811 4.079253 AGAACTTGGCGTAAATGGTCAAT 58.921 39.130 0.00 0.00 0.00 2.57
1845 2812 4.522789 AGAACTTGGCGTAAATGGTCAATT 59.477 37.500 0.00 0.00 0.00 2.32
1846 2813 4.864704 ACTTGGCGTAAATGGTCAATTT 57.135 36.364 0.00 0.00 41.47 1.82
1847 2814 5.968528 ACTTGGCGTAAATGGTCAATTTA 57.031 34.783 0.00 0.00 39.29 1.40
1848 2815 6.524101 ACTTGGCGTAAATGGTCAATTTAT 57.476 33.333 0.00 0.00 41.61 1.40
1849 2816 6.930731 ACTTGGCGTAAATGGTCAATTTATT 58.069 32.000 0.00 0.00 41.61 1.40
1850 2817 8.057536 ACTTGGCGTAAATGGTCAATTTATTA 57.942 30.769 0.00 0.00 41.61 0.98
1851 2818 8.188139 ACTTGGCGTAAATGGTCAATTTATTAG 58.812 33.333 0.00 0.00 41.61 1.73
1852 2819 7.633193 TGGCGTAAATGGTCAATTTATTAGT 57.367 32.000 0.00 0.00 41.61 2.24
1853 2820 7.476667 TGGCGTAAATGGTCAATTTATTAGTG 58.523 34.615 0.00 0.00 41.61 2.74
1854 2821 6.915843 GGCGTAAATGGTCAATTTATTAGTGG 59.084 38.462 0.00 0.00 41.61 4.00
1855 2822 7.415877 GGCGTAAATGGTCAATTTATTAGTGGT 60.416 37.037 0.00 0.00 41.61 4.16
1856 2823 7.431084 GCGTAAATGGTCAATTTATTAGTGGTG 59.569 37.037 0.00 0.00 41.61 4.17
1857 2824 7.913297 CGTAAATGGTCAATTTATTAGTGGTGG 59.087 37.037 0.00 0.00 41.61 4.61
1858 2825 8.962679 GTAAATGGTCAATTTATTAGTGGTGGA 58.037 33.333 0.00 0.00 41.61 4.02
1859 2826 8.429237 AAATGGTCAATTTATTAGTGGTGGAA 57.571 30.769 0.00 0.00 36.69 3.53
1860 2827 6.827586 TGGTCAATTTATTAGTGGTGGAAC 57.172 37.500 0.00 0.00 0.00 3.62
1861 2828 6.548321 TGGTCAATTTATTAGTGGTGGAACT 58.452 36.000 0.00 0.00 36.74 3.01
1862 2829 7.007723 TGGTCAATTTATTAGTGGTGGAACTT 58.992 34.615 0.00 0.00 36.74 2.66
1863 2830 8.164733 TGGTCAATTTATTAGTGGTGGAACTTA 58.835 33.333 0.00 0.00 36.74 2.24
1864 2831 9.185680 GGTCAATTTATTAGTGGTGGAACTTAT 57.814 33.333 0.00 0.00 36.74 1.73
1866 2833 9.184523 TCAATTTATTAGTGGTGGAACTTATGG 57.815 33.333 0.00 0.00 36.74 2.74
1867 2834 7.582667 ATTTATTAGTGGTGGAACTTATGGC 57.417 36.000 0.00 0.00 36.74 4.40
1868 2835 4.584638 ATTAGTGGTGGAACTTATGGCA 57.415 40.909 0.00 0.00 36.74 4.92
1869 2836 4.584638 TTAGTGGTGGAACTTATGGCAT 57.415 40.909 4.88 4.88 36.74 4.40
1870 2837 5.702065 TTAGTGGTGGAACTTATGGCATA 57.298 39.130 2.32 2.32 36.74 3.14
1871 2838 3.886123 AGTGGTGGAACTTATGGCATAC 58.114 45.455 6.72 0.00 36.74 2.39
1872 2839 3.265737 AGTGGTGGAACTTATGGCATACA 59.734 43.478 6.72 0.00 36.74 2.29
1873 2840 4.079787 AGTGGTGGAACTTATGGCATACAT 60.080 41.667 6.72 0.00 39.46 2.29
1874 2841 4.644685 GTGGTGGAACTTATGGCATACATT 59.355 41.667 6.72 4.42 37.81 2.71
1875 2842 4.644234 TGGTGGAACTTATGGCATACATTG 59.356 41.667 6.72 1.00 37.81 2.82
1876 2843 4.887071 GGTGGAACTTATGGCATACATTGA 59.113 41.667 6.72 0.00 37.81 2.57
1877 2844 5.359576 GGTGGAACTTATGGCATACATTGAA 59.640 40.000 6.72 0.00 37.81 2.69
1878 2845 6.460123 GGTGGAACTTATGGCATACATTGAAG 60.460 42.308 6.72 5.31 37.81 3.02
1879 2846 6.095440 GTGGAACTTATGGCATACATTGAAGT 59.905 38.462 6.72 5.98 39.09 3.01
1880 2847 6.095300 TGGAACTTATGGCATACATTGAAGTG 59.905 38.462 6.72 0.00 37.38 3.16
1881 2848 6.455360 AACTTATGGCATACATTGAAGTGG 57.545 37.500 6.72 0.00 37.38 4.00
1882 2849 5.509498 ACTTATGGCATACATTGAAGTGGT 58.491 37.500 6.72 0.00 37.13 4.16
1883 2850 5.357878 ACTTATGGCATACATTGAAGTGGTG 59.642 40.000 6.72 0.00 37.13 4.17
1884 2851 1.818060 TGGCATACATTGAAGTGGTGC 59.182 47.619 0.00 0.00 35.46 5.01
1885 2852 1.818060 GGCATACATTGAAGTGGTGCA 59.182 47.619 0.00 0.00 36.90 4.57
1886 2853 2.230992 GGCATACATTGAAGTGGTGCAA 59.769 45.455 0.00 0.00 36.90 4.08
1887 2854 3.305950 GGCATACATTGAAGTGGTGCAAA 60.306 43.478 0.00 0.00 36.90 3.68
1888 2855 3.674753 GCATACATTGAAGTGGTGCAAAC 59.325 43.478 0.00 0.00 35.93 2.93
1889 2856 4.795635 GCATACATTGAAGTGGTGCAAACA 60.796 41.667 0.00 0.00 35.93 2.83
1890 2857 3.163630 ACATTGAAGTGGTGCAAACAC 57.836 42.857 13.37 13.37 46.66 3.32
1895 2862 1.815866 AGTGGTGCAAACACTTGGC 59.184 52.632 17.03 0.00 46.38 4.52
1896 2863 0.684153 AGTGGTGCAAACACTTGGCT 60.684 50.000 17.03 0.00 46.38 4.75
1897 2864 0.175531 GTGGTGCAAACACTTGGCTT 59.824 50.000 13.83 0.00 46.57 4.35
1898 2865 0.175302 TGGTGCAAACACTTGGCTTG 59.825 50.000 0.00 0.00 46.57 4.01
1899 2866 0.530431 GGTGCAAACACTTGGCTTGG 60.530 55.000 0.00 0.00 46.57 3.61
1900 2867 0.530431 GTGCAAACACTTGGCTTGGG 60.530 55.000 0.00 0.00 43.85 4.12
1901 2868 0.975040 TGCAAACACTTGGCTTGGGT 60.975 50.000 0.00 0.00 32.76 4.51
1902 2869 0.530431 GCAAACACTTGGCTTGGGTG 60.530 55.000 0.00 0.00 37.05 4.61
1903 2870 0.823460 CAAACACTTGGCTTGGGTGT 59.177 50.000 0.00 0.00 44.63 4.16
1904 2871 0.823460 AAACACTTGGCTTGGGTGTG 59.177 50.000 0.00 0.00 42.37 3.82
1905 2872 1.675720 AACACTTGGCTTGGGTGTGC 61.676 55.000 0.00 0.00 42.37 4.57
1906 2873 2.126596 CACTTGGCTTGGGTGTGCA 61.127 57.895 0.00 0.00 0.00 4.57
1907 2874 1.381056 ACTTGGCTTGGGTGTGCAA 60.381 52.632 0.00 0.00 0.00 4.08
1908 2875 0.975040 ACTTGGCTTGGGTGTGCAAA 60.975 50.000 0.00 0.00 0.00 3.68
1909 2876 0.393820 CTTGGCTTGGGTGTGCAAAT 59.606 50.000 0.00 0.00 0.00 2.32
1910 2877 1.617850 CTTGGCTTGGGTGTGCAAATA 59.382 47.619 0.00 0.00 0.00 1.40
1911 2878 1.935799 TGGCTTGGGTGTGCAAATAT 58.064 45.000 0.00 0.00 0.00 1.28
1912 2879 1.549620 TGGCTTGGGTGTGCAAATATG 59.450 47.619 0.00 0.00 0.00 1.78
1913 2880 1.134729 GGCTTGGGTGTGCAAATATGG 60.135 52.381 0.00 0.00 0.00 2.74
1914 2881 1.550072 GCTTGGGTGTGCAAATATGGT 59.450 47.619 0.00 0.00 0.00 3.55
1915 2882 2.674747 GCTTGGGTGTGCAAATATGGTG 60.675 50.000 0.00 0.00 0.00 4.17
1916 2883 0.894141 TGGGTGTGCAAATATGGTGC 59.106 50.000 4.96 4.96 42.55 5.01
1917 2884 1.185315 GGGTGTGCAAATATGGTGCT 58.815 50.000 11.71 0.00 42.69 4.40
1918 2885 2.291217 TGGGTGTGCAAATATGGTGCTA 60.291 45.455 11.71 0.89 42.69 3.49
1919 2886 2.757868 GGGTGTGCAAATATGGTGCTAA 59.242 45.455 11.71 0.00 42.69 3.09
1920 2887 3.384467 GGGTGTGCAAATATGGTGCTAAT 59.616 43.478 11.71 0.00 42.69 1.73
1921 2888 4.499696 GGGTGTGCAAATATGGTGCTAATC 60.500 45.833 11.71 2.50 42.69 1.75
1922 2889 4.097741 GGTGTGCAAATATGGTGCTAATCA 59.902 41.667 11.71 5.00 42.69 2.57
1923 2890 5.036737 GTGTGCAAATATGGTGCTAATCAC 58.963 41.667 11.71 11.01 42.69 3.06
1924 2891 4.949238 TGTGCAAATATGGTGCTAATCACT 59.051 37.500 11.71 0.00 44.98 3.41
1925 2892 5.418524 TGTGCAAATATGGTGCTAATCACTT 59.581 36.000 11.71 0.00 44.98 3.16
1926 2893 6.071447 TGTGCAAATATGGTGCTAATCACTTT 60.071 34.615 11.71 0.00 44.98 2.66
1927 2894 6.813152 GTGCAAATATGGTGCTAATCACTTTT 59.187 34.615 11.71 0.00 44.98 2.27
1928 2895 6.812656 TGCAAATATGGTGCTAATCACTTTTG 59.187 34.615 11.71 0.00 44.98 2.44
1929 2896 6.813152 GCAAATATGGTGCTAATCACTTTTGT 59.187 34.615 4.72 0.00 44.98 2.83
1930 2897 7.973388 GCAAATATGGTGCTAATCACTTTTGTA 59.027 33.333 4.72 0.00 44.98 2.41
1931 2898 9.289303 CAAATATGGTGCTAATCACTTTTGTAC 57.711 33.333 0.00 0.00 44.98 2.90
1932 2899 8.574251 AATATGGTGCTAATCACTTTTGTACA 57.426 30.769 0.00 0.00 44.98 2.90
1933 2900 5.682943 TGGTGCTAATCACTTTTGTACAC 57.317 39.130 0.00 0.00 44.98 2.90
1934 2901 5.126779 TGGTGCTAATCACTTTTGTACACA 58.873 37.500 0.00 0.00 44.98 3.72
1935 2902 5.008217 TGGTGCTAATCACTTTTGTACACAC 59.992 40.000 0.00 0.00 44.98 3.82
1936 2903 5.449304 GTGCTAATCACTTTTGTACACACC 58.551 41.667 0.00 0.00 42.38 4.16
1937 2904 4.517453 TGCTAATCACTTTTGTACACACCC 59.483 41.667 0.00 0.00 0.00 4.61
1938 2905 4.378046 GCTAATCACTTTTGTACACACCCG 60.378 45.833 0.00 0.00 0.00 5.28
1939 2906 1.301423 TCACTTTTGTACACACCCGC 58.699 50.000 0.00 0.00 0.00 6.13
1940 2907 1.018148 CACTTTTGTACACACCCGCA 58.982 50.000 0.00 0.00 0.00 5.69
1941 2908 1.402259 CACTTTTGTACACACCCGCAA 59.598 47.619 0.00 0.00 0.00 4.85
1942 2909 1.402613 ACTTTTGTACACACCCGCAAC 59.597 47.619 0.00 0.00 0.00 4.17
1943 2910 1.402259 CTTTTGTACACACCCGCAACA 59.598 47.619 0.00 0.00 0.00 3.33
1944 2911 0.733729 TTTGTACACACCCGCAACAC 59.266 50.000 0.00 0.00 0.00 3.32
1945 2912 0.107606 TTGTACACACCCGCAACACT 60.108 50.000 0.00 0.00 0.00 3.55
1946 2913 0.812014 TGTACACACCCGCAACACTG 60.812 55.000 0.00 0.00 0.00 3.66
1947 2914 0.531090 GTACACACCCGCAACACTGA 60.531 55.000 0.00 0.00 0.00 3.41
1948 2915 0.531090 TACACACCCGCAACACTGAC 60.531 55.000 0.00 0.00 0.00 3.51
1949 2916 1.817520 CACACCCGCAACACTGACA 60.818 57.895 0.00 0.00 0.00 3.58
1950 2917 1.078072 ACACCCGCAACACTGACAA 60.078 52.632 0.00 0.00 0.00 3.18
1951 2918 0.678366 ACACCCGCAACACTGACAAA 60.678 50.000 0.00 0.00 0.00 2.83
1952 2919 0.029300 CACCCGCAACACTGACAAAG 59.971 55.000 0.00 0.00 0.00 2.77
1953 2920 1.008538 CCCGCAACACTGACAAAGC 60.009 57.895 0.00 0.00 0.00 3.51
1954 2921 1.008538 CCGCAACACTGACAAAGCC 60.009 57.895 0.00 0.00 0.00 4.35
1955 2922 1.447317 CCGCAACACTGACAAAGCCT 61.447 55.000 0.00 0.00 0.00 4.58
1956 2923 0.317269 CGCAACACTGACAAAGCCTG 60.317 55.000 0.00 0.00 0.00 4.85
1957 2924 0.595825 GCAACACTGACAAAGCCTGC 60.596 55.000 0.00 0.00 0.00 4.85
1958 2925 0.031178 CAACACTGACAAAGCCTGCC 59.969 55.000 0.00 0.00 0.00 4.85
1959 2926 0.395586 AACACTGACAAAGCCTGCCA 60.396 50.000 0.00 0.00 0.00 4.92
1960 2927 0.820891 ACACTGACAAAGCCTGCCAG 60.821 55.000 0.00 0.00 41.10 4.85
1961 2928 1.900498 ACTGACAAAGCCTGCCAGC 60.900 57.895 0.33 0.00 39.03 4.85
1962 2929 1.900016 CTGACAAAGCCTGCCAGCA 60.900 57.895 0.00 0.00 27.93 4.41
1963 2930 2.138656 CTGACAAAGCCTGCCAGCAC 62.139 60.000 0.00 0.00 27.93 4.40
1964 2931 3.259425 GACAAAGCCTGCCAGCACG 62.259 63.158 0.00 0.00 34.23 5.34
1965 2932 4.047059 CAAAGCCTGCCAGCACGG 62.047 66.667 0.00 0.00 38.11 4.94
1982 2949 2.437002 GCGTCGGCCCCATTGTTA 60.437 61.111 0.00 0.00 0.00 2.41
1983 2950 2.469516 GCGTCGGCCCCATTGTTAG 61.470 63.158 0.00 0.00 0.00 2.34
1984 2951 1.078708 CGTCGGCCCCATTGTTAGT 60.079 57.895 0.00 0.00 0.00 2.24
1985 2952 1.366111 CGTCGGCCCCATTGTTAGTG 61.366 60.000 0.00 0.00 0.00 2.74
1986 2953 0.035820 GTCGGCCCCATTGTTAGTGA 60.036 55.000 0.00 0.00 0.00 3.41
1987 2954 0.035820 TCGGCCCCATTGTTAGTGAC 60.036 55.000 0.00 0.00 0.00 3.67
1988 2955 1.029947 CGGCCCCATTGTTAGTGACC 61.030 60.000 0.00 0.00 0.00 4.02
1989 2956 0.039035 GGCCCCATTGTTAGTGACCA 59.961 55.000 0.00 0.00 0.00 4.02
1990 2957 1.549037 GGCCCCATTGTTAGTGACCAA 60.549 52.381 0.00 0.00 0.00 3.67
1991 2958 2.243810 GCCCCATTGTTAGTGACCAAA 58.756 47.619 0.00 0.00 0.00 3.28
1992 2959 2.029380 GCCCCATTGTTAGTGACCAAAC 60.029 50.000 0.00 0.00 0.00 2.93
1993 2960 3.226777 CCCCATTGTTAGTGACCAAACA 58.773 45.455 0.00 0.00 33.92 2.83
1994 2961 3.639094 CCCCATTGTTAGTGACCAAACAA 59.361 43.478 13.86 13.86 46.37 2.83
2001 2968 6.371809 TGTTAGTGACCAAACAATGAAGAC 57.628 37.500 0.00 0.00 32.86 3.01
2002 2969 5.883115 TGTTAGTGACCAAACAATGAAGACA 59.117 36.000 0.00 0.00 32.86 3.41
2003 2970 6.375736 TGTTAGTGACCAAACAATGAAGACAA 59.624 34.615 0.00 0.00 32.86 3.18
2004 2971 5.505173 AGTGACCAAACAATGAAGACAAG 57.495 39.130 0.00 0.00 0.00 3.16
2005 2972 4.339247 AGTGACCAAACAATGAAGACAAGG 59.661 41.667 0.00 0.00 0.00 3.61
2006 2973 4.097892 GTGACCAAACAATGAAGACAAGGT 59.902 41.667 0.00 0.00 0.00 3.50
2007 2974 4.097741 TGACCAAACAATGAAGACAAGGTG 59.902 41.667 0.00 0.00 0.00 4.00
2008 2975 4.023291 ACCAAACAATGAAGACAAGGTGT 58.977 39.130 0.00 0.00 0.00 4.16
2009 2976 4.142182 ACCAAACAATGAAGACAAGGTGTG 60.142 41.667 0.00 0.00 0.00 3.82
2010 2977 4.142182 CCAAACAATGAAGACAAGGTGTGT 60.142 41.667 0.00 0.00 45.74 3.72
2011 2978 4.637483 AACAATGAAGACAAGGTGTGTG 57.363 40.909 0.00 0.00 41.96 3.82
2012 2979 2.951642 ACAATGAAGACAAGGTGTGTGG 59.048 45.455 0.00 0.00 41.96 4.17
2013 2980 2.276732 ATGAAGACAAGGTGTGTGGG 57.723 50.000 0.00 0.00 41.96 4.61
2014 2981 0.916086 TGAAGACAAGGTGTGTGGGT 59.084 50.000 0.00 0.00 41.96 4.51
2015 2982 1.283613 TGAAGACAAGGTGTGTGGGTT 59.716 47.619 0.00 0.00 41.96 4.11
2016 2983 2.291282 TGAAGACAAGGTGTGTGGGTTT 60.291 45.455 0.00 0.00 41.96 3.27
2017 2984 2.525105 AGACAAGGTGTGTGGGTTTT 57.475 45.000 0.00 0.00 41.96 2.43
2018 2985 2.815158 AGACAAGGTGTGTGGGTTTTT 58.185 42.857 0.00 0.00 41.96 1.94
2019 2986 2.758423 AGACAAGGTGTGTGGGTTTTTC 59.242 45.455 0.00 0.00 41.96 2.29
2020 2987 1.828595 ACAAGGTGTGTGGGTTTTTCC 59.171 47.619 0.00 0.00 39.72 3.13
2048 3015 5.585820 TTTTTCCTACAAACCCACTTGTC 57.414 39.130 0.00 0.00 40.08 3.18
2049 3016 4.513406 TTTCCTACAAACCCACTTGTCT 57.487 40.909 0.00 0.00 40.08 3.41
2050 3017 4.513406 TTCCTACAAACCCACTTGTCTT 57.487 40.909 0.00 0.00 40.08 3.01
2051 3018 4.081322 TCCTACAAACCCACTTGTCTTC 57.919 45.455 0.00 0.00 40.08 2.87
2052 3019 3.714798 TCCTACAAACCCACTTGTCTTCT 59.285 43.478 0.00 0.00 40.08 2.85
2053 3020 4.903049 TCCTACAAACCCACTTGTCTTCTA 59.097 41.667 0.00 0.00 40.08 2.10
2054 3021 5.546499 TCCTACAAACCCACTTGTCTTCTAT 59.454 40.000 0.00 0.00 40.08 1.98
2055 3022 6.043938 TCCTACAAACCCACTTGTCTTCTATT 59.956 38.462 0.00 0.00 40.08 1.73
2056 3023 6.715264 CCTACAAACCCACTTGTCTTCTATTT 59.285 38.462 0.00 0.00 40.08 1.40
2057 3024 7.230712 CCTACAAACCCACTTGTCTTCTATTTT 59.769 37.037 0.00 0.00 40.08 1.82
2058 3025 7.418337 ACAAACCCACTTGTCTTCTATTTTT 57.582 32.000 0.00 0.00 34.37 1.94
2076 3043 3.374042 TTTTTCACCAAGACCCTGACA 57.626 42.857 0.00 0.00 0.00 3.58
2077 3044 2.638480 TTTCACCAAGACCCTGACAG 57.362 50.000 0.00 0.00 0.00 3.51
2078 3045 0.764890 TTCACCAAGACCCTGACAGG 59.235 55.000 15.15 15.15 34.30 4.00
2079 3046 0.399949 TCACCAAGACCCTGACAGGT 60.400 55.000 20.24 8.41 45.12 4.00
2080 3047 0.250467 CACCAAGACCCTGACAGGTG 60.250 60.000 20.24 13.60 41.42 4.00
2081 3048 1.376466 CCAAGACCCTGACAGGTGG 59.624 63.158 20.24 16.33 41.42 4.61
2087 3054 1.847968 CCCTGACAGGTGGGTCCTT 60.848 63.158 20.24 0.00 45.67 3.36
2088 3055 1.376466 CCTGACAGGTGGGTCCTTG 59.624 63.158 13.84 0.00 45.67 3.61
2089 3056 1.302832 CTGACAGGTGGGTCCTTGC 60.303 63.158 0.00 0.00 45.67 4.01
2090 3057 1.770110 TGACAGGTGGGTCCTTGCT 60.770 57.895 0.00 0.00 45.67 3.91
2091 3058 1.302832 GACAGGTGGGTCCTTGCTG 60.303 63.158 0.00 0.00 45.67 4.41
2092 3059 2.056906 GACAGGTGGGTCCTTGCTGT 62.057 60.000 0.00 0.00 45.67 4.40
2093 3060 1.601759 CAGGTGGGTCCTTGCTGTG 60.602 63.158 0.00 0.00 45.67 3.66
2094 3061 1.770110 AGGTGGGTCCTTGCTGTGA 60.770 57.895 0.00 0.00 45.67 3.58
2095 3062 1.302832 GGTGGGTCCTTGCTGTGAG 60.303 63.158 0.00 0.00 0.00 3.51
2096 3063 1.968540 GTGGGTCCTTGCTGTGAGC 60.969 63.158 0.00 0.00 42.82 4.26
2129 3096 9.435688 AAAAATAATTGAACATAGAAAGGGTGC 57.564 29.630 0.00 0.00 0.00 5.01
2130 3097 4.701956 AATTGAACATAGAAAGGGTGCG 57.298 40.909 0.00 0.00 0.00 5.34
2131 3098 2.851263 TGAACATAGAAAGGGTGCGT 57.149 45.000 0.00 0.00 0.00 5.24
2132 3099 3.134574 TGAACATAGAAAGGGTGCGTT 57.865 42.857 0.00 0.00 0.00 4.84
2133 3100 3.482436 TGAACATAGAAAGGGTGCGTTT 58.518 40.909 0.00 0.00 0.00 3.60
2134 3101 4.643463 TGAACATAGAAAGGGTGCGTTTA 58.357 39.130 0.00 0.00 0.00 2.01
2135 3102 4.693566 TGAACATAGAAAGGGTGCGTTTAG 59.306 41.667 0.00 0.00 0.00 1.85
2136 3103 3.606687 ACATAGAAAGGGTGCGTTTAGG 58.393 45.455 0.00 0.00 0.00 2.69
2137 3104 3.008704 ACATAGAAAGGGTGCGTTTAGGT 59.991 43.478 0.00 0.00 0.00 3.08
2138 3105 2.651382 AGAAAGGGTGCGTTTAGGTT 57.349 45.000 0.00 0.00 0.00 3.50
2139 3106 2.940158 AGAAAGGGTGCGTTTAGGTTT 58.060 42.857 0.00 0.00 0.00 3.27
2140 3107 2.882761 AGAAAGGGTGCGTTTAGGTTTC 59.117 45.455 0.00 0.00 0.00 2.78
2141 3108 2.351706 AAGGGTGCGTTTAGGTTTCA 57.648 45.000 0.00 0.00 0.00 2.69
2142 3109 2.351706 AGGGTGCGTTTAGGTTTCAA 57.648 45.000 0.00 0.00 0.00 2.69
2143 3110 2.657143 AGGGTGCGTTTAGGTTTCAAA 58.343 42.857 0.00 0.00 0.00 2.69
2144 3111 2.621526 AGGGTGCGTTTAGGTTTCAAAG 59.378 45.455 0.00 0.00 0.00 2.77
2145 3112 2.390938 GGTGCGTTTAGGTTTCAAAGC 58.609 47.619 0.00 0.00 0.00 3.51
2146 3113 2.223618 GGTGCGTTTAGGTTTCAAAGCA 60.224 45.455 1.44 0.00 0.00 3.91
2147 3114 3.042887 GTGCGTTTAGGTTTCAAAGCAG 58.957 45.455 1.44 0.00 33.84 4.24
2148 3115 2.051423 GCGTTTAGGTTTCAAAGCAGC 58.949 47.619 1.44 0.00 0.00 5.25
2149 3116 2.287608 GCGTTTAGGTTTCAAAGCAGCT 60.288 45.455 1.44 0.00 0.00 4.24
2150 3117 3.058501 GCGTTTAGGTTTCAAAGCAGCTA 60.059 43.478 1.44 0.00 0.00 3.32
2151 3118 4.464112 CGTTTAGGTTTCAAAGCAGCTAC 58.536 43.478 1.44 0.00 0.00 3.58
2152 3119 4.612939 CGTTTAGGTTTCAAAGCAGCTACC 60.613 45.833 1.44 0.00 0.00 3.18
2153 3120 2.959465 AGGTTTCAAAGCAGCTACCT 57.041 45.000 7.89 7.89 0.00 3.08
2154 3121 2.784347 AGGTTTCAAAGCAGCTACCTC 58.216 47.619 7.89 0.00 30.42 3.85
2155 3122 1.813178 GGTTTCAAAGCAGCTACCTCC 59.187 52.381 0.00 0.00 0.00 4.30
2156 3123 2.504367 GTTTCAAAGCAGCTACCTCCA 58.496 47.619 0.00 0.00 0.00 3.86
2157 3124 2.884639 GTTTCAAAGCAGCTACCTCCAA 59.115 45.455 0.00 0.00 0.00 3.53
2158 3125 3.439857 TTCAAAGCAGCTACCTCCAAT 57.560 42.857 0.00 0.00 0.00 3.16
2159 3126 3.439857 TCAAAGCAGCTACCTCCAATT 57.560 42.857 0.00 0.00 0.00 2.32
2160 3127 3.766545 TCAAAGCAGCTACCTCCAATTT 58.233 40.909 0.00 0.00 0.00 1.82
2161 3128 4.917385 TCAAAGCAGCTACCTCCAATTTA 58.083 39.130 0.00 0.00 0.00 1.40
2162 3129 5.321102 TCAAAGCAGCTACCTCCAATTTAA 58.679 37.500 0.00 0.00 0.00 1.52
2163 3130 5.951747 TCAAAGCAGCTACCTCCAATTTAAT 59.048 36.000 0.00 0.00 0.00 1.40
2164 3131 5.841957 AAGCAGCTACCTCCAATTTAATG 57.158 39.130 0.00 0.00 0.00 1.90
2165 3132 4.860022 AGCAGCTACCTCCAATTTAATGT 58.140 39.130 0.00 0.00 0.00 2.71
2166 3133 4.641989 AGCAGCTACCTCCAATTTAATGTG 59.358 41.667 0.00 0.00 0.00 3.21
2167 3134 4.399303 GCAGCTACCTCCAATTTAATGTGT 59.601 41.667 0.00 0.00 0.00 3.72
2168 3135 5.449177 GCAGCTACCTCCAATTTAATGTGTC 60.449 44.000 0.00 0.00 0.00 3.67
2169 3136 5.066505 CAGCTACCTCCAATTTAATGTGTCC 59.933 44.000 0.00 0.00 0.00 4.02
2170 3137 4.035208 GCTACCTCCAATTTAATGTGTCCG 59.965 45.833 0.00 0.00 0.00 4.79
2171 3138 2.752903 ACCTCCAATTTAATGTGTCCGC 59.247 45.455 0.00 0.00 0.00 5.54
2172 3139 3.016736 CCTCCAATTTAATGTGTCCGCT 58.983 45.455 0.00 0.00 0.00 5.52
2173 3140 3.181497 CCTCCAATTTAATGTGTCCGCTG 60.181 47.826 0.00 0.00 0.00 5.18
2174 3141 2.163412 TCCAATTTAATGTGTCCGCTGC 59.837 45.455 0.00 0.00 0.00 5.25
2175 3142 2.164219 CCAATTTAATGTGTCCGCTGCT 59.836 45.455 0.00 0.00 0.00 4.24
2176 3143 3.376859 CCAATTTAATGTGTCCGCTGCTA 59.623 43.478 0.00 0.00 0.00 3.49
2177 3144 4.142491 CCAATTTAATGTGTCCGCTGCTAA 60.142 41.667 0.00 0.00 0.00 3.09
2178 3145 4.616181 ATTTAATGTGTCCGCTGCTAAC 57.384 40.909 0.00 0.00 0.00 2.34
2179 3146 2.018542 TAATGTGTCCGCTGCTAACC 57.981 50.000 0.00 0.00 0.00 2.85
2180 3147 0.036164 AATGTGTCCGCTGCTAACCA 59.964 50.000 0.00 0.00 0.00 3.67
2181 3148 0.673644 ATGTGTCCGCTGCTAACCAC 60.674 55.000 0.00 0.15 0.00 4.16
2182 3149 2.033194 GTGTCCGCTGCTAACCACC 61.033 63.158 0.00 0.00 0.00 4.61
2183 3150 2.214216 TGTCCGCTGCTAACCACCT 61.214 57.895 0.00 0.00 0.00 4.00
2184 3151 1.741770 GTCCGCTGCTAACCACCTG 60.742 63.158 0.00 0.00 0.00 4.00
2185 3152 1.911269 TCCGCTGCTAACCACCTGA 60.911 57.895 0.00 0.00 0.00 3.86
2186 3153 1.741770 CCGCTGCTAACCACCTGAC 60.742 63.158 0.00 0.00 0.00 3.51
2187 3154 1.005037 CGCTGCTAACCACCTGACA 60.005 57.895 0.00 0.00 0.00 3.58
2188 3155 0.602638 CGCTGCTAACCACCTGACAA 60.603 55.000 0.00 0.00 0.00 3.18
2189 3156 1.604604 GCTGCTAACCACCTGACAAA 58.395 50.000 0.00 0.00 0.00 2.83
2190 3157 1.953686 GCTGCTAACCACCTGACAAAA 59.046 47.619 0.00 0.00 0.00 2.44
2191 3158 2.360801 GCTGCTAACCACCTGACAAAAA 59.639 45.455 0.00 0.00 0.00 1.94
2192 3159 3.005791 GCTGCTAACCACCTGACAAAAAT 59.994 43.478 0.00 0.00 0.00 1.82
2193 3160 4.798574 CTGCTAACCACCTGACAAAAATC 58.201 43.478 0.00 0.00 0.00 2.17
2194 3161 4.211125 TGCTAACCACCTGACAAAAATCA 58.789 39.130 0.00 0.00 0.00 2.57
2195 3162 4.832266 TGCTAACCACCTGACAAAAATCAT 59.168 37.500 0.00 0.00 0.00 2.45
2196 3163 6.007076 TGCTAACCACCTGACAAAAATCATA 58.993 36.000 0.00 0.00 0.00 2.15
2197 3164 6.072175 TGCTAACCACCTGACAAAAATCATAC 60.072 38.462 0.00 0.00 0.00 2.39
2198 3165 6.072175 GCTAACCACCTGACAAAAATCATACA 60.072 38.462 0.00 0.00 0.00 2.29
2199 3166 5.705609 ACCACCTGACAAAAATCATACAC 57.294 39.130 0.00 0.00 0.00 2.90
2200 3167 5.136828 ACCACCTGACAAAAATCATACACA 58.863 37.500 0.00 0.00 0.00 3.72
2201 3168 5.596361 ACCACCTGACAAAAATCATACACAA 59.404 36.000 0.00 0.00 0.00 3.33
2202 3169 6.097554 ACCACCTGACAAAAATCATACACAAA 59.902 34.615 0.00 0.00 0.00 2.83
2203 3170 6.420604 CCACCTGACAAAAATCATACACAAAC 59.579 38.462 0.00 0.00 0.00 2.93
2204 3171 7.202526 CACCTGACAAAAATCATACACAAACT 58.797 34.615 0.00 0.00 0.00 2.66
2205 3172 7.706179 CACCTGACAAAAATCATACACAAACTT 59.294 33.333 0.00 0.00 0.00 2.66
2206 3173 8.908903 ACCTGACAAAAATCATACACAAACTTA 58.091 29.630 0.00 0.00 0.00 2.24
2207 3174 9.912634 CCTGACAAAAATCATACACAAACTTAT 57.087 29.630 0.00 0.00 0.00 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
94 97 1.461127 CTTCTTTTTCTGCCTCGTCGG 59.539 52.381 0.00 0.00 0.00 4.79
102 105 4.474113 CAGTGCATCTCTTCTTTTTCTGC 58.526 43.478 0.00 0.00 0.00 4.26
107 110 3.515602 ACCCAGTGCATCTCTTCTTTT 57.484 42.857 0.00 0.00 0.00 2.27
112 115 1.556911 CAGGTACCCAGTGCATCTCTT 59.443 52.381 8.74 0.00 0.00 2.85
267 270 1.605058 TTCTCGCTCTTTCTCCCCCG 61.605 60.000 0.00 0.00 0.00 5.73
310 313 2.890371 GTGGCGTAGATCGTGGGT 59.110 61.111 0.00 0.00 42.13 4.51
526 530 7.818930 CCCAAATGCATTCCACCATATATTAAC 59.181 37.037 13.38 0.00 0.00 2.01
534 538 0.542805 GCCCAAATGCATTCCACCAT 59.457 50.000 13.38 0.00 0.00 3.55
546 550 0.252197 GTACCCTCGACAGCCCAAAT 59.748 55.000 0.00 0.00 0.00 2.32
671 685 3.751175 CGAAAGTTGGGACATTCAGCTAA 59.249 43.478 0.00 0.00 39.30 3.09
683 697 1.433534 GTCTCTGAGCGAAAGTTGGG 58.566 55.000 0.00 0.00 0.00 4.12
698 712 4.803613 ACTTTGGCATTTTGTTTTCGTCTC 59.196 37.500 0.00 0.00 0.00 3.36
703 717 3.627123 AGGCACTTTGGCATTTTGTTTTC 59.373 39.130 2.29 0.00 46.46 2.29
767 793 8.337118 TCATTAAATTATTCAGGAGGACCTCT 57.663 34.615 20.97 3.44 45.94 3.69
768 794 9.579932 AATCATTAAATTATTCAGGAGGACCTC 57.420 33.333 13.60 13.60 45.94 3.85
778 806 9.065798 TCGAGGCATGAATCATTAAATTATTCA 57.934 29.630 0.00 10.90 42.17 2.57
955 1711 9.799106 TGCTTGAGATATATCGATATATGAGGA 57.201 33.333 32.69 23.26 36.38 3.71
1011 1770 3.569049 CTCCGGCCACGACGTCTTT 62.569 63.158 14.70 0.00 44.60 2.52
1260 2019 3.729966 GCCCCGTTTCTAAGGAGATAAG 58.270 50.000 0.00 0.00 0.00 1.73
1397 2360 8.929260 TGAGAACATGCAATTTCCTATATGAT 57.071 30.769 6.97 0.00 0.00 2.45
1470 2434 7.694093 AGGGATAATGGAAAAGATATGTCTCC 58.306 38.462 0.00 0.00 32.15 3.71
1491 2455 6.975196 TGATGATTTTTCTTTCACAAGGGA 57.025 33.333 0.00 0.00 0.00 4.20
1561 2525 0.247655 CGTGCGTTCCATCGGATTTG 60.248 55.000 0.00 0.00 33.36 2.32
1568 2532 2.267188 TACTGTACGTGCGTTCCATC 57.733 50.000 1.66 0.00 0.00 3.51
1604 2570 3.866582 GGCCAGCGCTCCATACCT 61.867 66.667 7.13 0.00 34.44 3.08
1606 2572 1.963338 GATGGCCAGCGCTCCATAC 60.963 63.158 25.82 16.97 42.74 2.39
1634 2600 0.604780 AGCAGTACAGGCAGCAACAG 60.605 55.000 11.46 0.00 0.00 3.16
1785 2752 8.184192 GTGTAATTGATTCGAAAATCCATGTCT 58.816 33.333 0.00 0.00 40.57 3.41
1790 2757 5.163703 CCGGTGTAATTGATTCGAAAATCCA 60.164 40.000 0.00 0.00 40.57 3.41
1792 2759 5.737290 CACCGGTGTAATTGATTCGAAAATC 59.263 40.000 26.95 0.00 41.48 2.17
1810 2777 0.034896 CAAGTTCTAGCACCACCGGT 59.965 55.000 0.00 0.00 35.62 5.28
1811 2778 0.673644 CCAAGTTCTAGCACCACCGG 60.674 60.000 0.00 0.00 0.00 5.28
1812 2779 1.298859 GCCAAGTTCTAGCACCACCG 61.299 60.000 0.00 0.00 0.00 4.94
1813 2780 1.298859 CGCCAAGTTCTAGCACCACC 61.299 60.000 0.00 0.00 0.00 4.61
1814 2781 0.602905 ACGCCAAGTTCTAGCACCAC 60.603 55.000 0.00 0.00 0.00 4.16
1815 2782 0.970640 TACGCCAAGTTCTAGCACCA 59.029 50.000 0.00 0.00 0.00 4.17
1816 2783 2.088950 TTACGCCAAGTTCTAGCACC 57.911 50.000 0.00 0.00 0.00 5.01
1817 2784 3.181510 CCATTTACGCCAAGTTCTAGCAC 60.182 47.826 0.00 0.00 0.00 4.40
1818 2785 3.006940 CCATTTACGCCAAGTTCTAGCA 58.993 45.455 0.00 0.00 0.00 3.49
1819 2786 3.007635 ACCATTTACGCCAAGTTCTAGC 58.992 45.455 0.00 0.00 0.00 3.42
1820 2787 4.250464 TGACCATTTACGCCAAGTTCTAG 58.750 43.478 0.00 0.00 0.00 2.43
1821 2788 4.274602 TGACCATTTACGCCAAGTTCTA 57.725 40.909 0.00 0.00 0.00 2.10
1822 2789 3.134574 TGACCATTTACGCCAAGTTCT 57.865 42.857 0.00 0.00 0.00 3.01
1823 2790 3.907894 TTGACCATTTACGCCAAGTTC 57.092 42.857 0.00 0.00 0.00 3.01
1824 2791 4.864704 AATTGACCATTTACGCCAAGTT 57.135 36.364 0.00 0.00 0.00 2.66
1825 2792 4.864704 AAATTGACCATTTACGCCAAGT 57.135 36.364 0.00 0.00 32.90 3.16
1826 2793 8.188139 ACTAATAAATTGACCATTTACGCCAAG 58.812 33.333 0.00 0.00 39.66 3.61
1827 2794 7.971168 CACTAATAAATTGACCATTTACGCCAA 59.029 33.333 0.00 0.00 39.66 4.52
1828 2795 7.415765 CCACTAATAAATTGACCATTTACGCCA 60.416 37.037 0.00 0.00 39.66 5.69
1829 2796 6.915843 CCACTAATAAATTGACCATTTACGCC 59.084 38.462 0.00 0.00 39.66 5.68
1830 2797 7.431084 CACCACTAATAAATTGACCATTTACGC 59.569 37.037 0.00 0.00 39.66 4.42
1831 2798 7.913297 CCACCACTAATAAATTGACCATTTACG 59.087 37.037 0.00 0.00 39.66 3.18
1832 2799 8.962679 TCCACCACTAATAAATTGACCATTTAC 58.037 33.333 0.00 0.00 39.66 2.01
1833 2800 9.535170 TTCCACCACTAATAAATTGACCATTTA 57.465 29.630 0.00 0.00 40.85 1.40
1834 2801 8.311109 GTTCCACCACTAATAAATTGACCATTT 58.689 33.333 0.00 0.00 38.69 2.32
1835 2802 7.673926 AGTTCCACCACTAATAAATTGACCATT 59.326 33.333 0.00 0.00 0.00 3.16
1836 2803 7.182060 AGTTCCACCACTAATAAATTGACCAT 58.818 34.615 0.00 0.00 0.00 3.55
1837 2804 6.548321 AGTTCCACCACTAATAAATTGACCA 58.452 36.000 0.00 0.00 0.00 4.02
1838 2805 7.462571 AAGTTCCACCACTAATAAATTGACC 57.537 36.000 0.00 0.00 0.00 4.02
1840 2807 9.184523 CCATAAGTTCCACCACTAATAAATTGA 57.815 33.333 0.00 0.00 0.00 2.57
1841 2808 7.920682 GCCATAAGTTCCACCACTAATAAATTG 59.079 37.037 0.00 0.00 0.00 2.32
1842 2809 7.617723 TGCCATAAGTTCCACCACTAATAAATT 59.382 33.333 0.00 0.00 0.00 1.82
1843 2810 7.122715 TGCCATAAGTTCCACCACTAATAAAT 58.877 34.615 0.00 0.00 0.00 1.40
1844 2811 6.486056 TGCCATAAGTTCCACCACTAATAAA 58.514 36.000 0.00 0.00 0.00 1.40
1845 2812 6.068461 TGCCATAAGTTCCACCACTAATAA 57.932 37.500 0.00 0.00 0.00 1.40
1846 2813 5.702065 TGCCATAAGTTCCACCACTAATA 57.298 39.130 0.00 0.00 0.00 0.98
1847 2814 4.584638 TGCCATAAGTTCCACCACTAAT 57.415 40.909 0.00 0.00 0.00 1.73
1848 2815 4.584638 ATGCCATAAGTTCCACCACTAA 57.415 40.909 0.00 0.00 0.00 2.24
1849 2816 4.471747 TGTATGCCATAAGTTCCACCACTA 59.528 41.667 0.00 0.00 0.00 2.74
1850 2817 3.265737 TGTATGCCATAAGTTCCACCACT 59.734 43.478 0.00 0.00 0.00 4.00
1851 2818 3.616219 TGTATGCCATAAGTTCCACCAC 58.384 45.455 0.00 0.00 0.00 4.16
1852 2819 4.518278 ATGTATGCCATAAGTTCCACCA 57.482 40.909 0.00 0.00 29.82 4.17
1853 2820 4.887071 TCAATGTATGCCATAAGTTCCACC 59.113 41.667 0.00 0.00 31.97 4.61
1854 2821 6.095440 ACTTCAATGTATGCCATAAGTTCCAC 59.905 38.462 0.00 0.00 31.28 4.02
1855 2822 6.095300 CACTTCAATGTATGCCATAAGTTCCA 59.905 38.462 0.00 0.00 32.47 3.53
1856 2823 6.460123 CCACTTCAATGTATGCCATAAGTTCC 60.460 42.308 0.00 0.00 32.47 3.62
1857 2824 6.095440 ACCACTTCAATGTATGCCATAAGTTC 59.905 38.462 0.00 0.00 32.47 3.01
1858 2825 5.951747 ACCACTTCAATGTATGCCATAAGTT 59.048 36.000 0.00 0.00 32.47 2.66
1859 2826 5.357878 CACCACTTCAATGTATGCCATAAGT 59.642 40.000 0.00 0.00 34.23 2.24
1860 2827 5.734220 GCACCACTTCAATGTATGCCATAAG 60.734 44.000 0.00 0.00 31.97 1.73
1861 2828 4.097741 GCACCACTTCAATGTATGCCATAA 59.902 41.667 0.00 0.00 31.97 1.90
1862 2829 3.631686 GCACCACTTCAATGTATGCCATA 59.368 43.478 0.00 0.00 31.97 2.74
1863 2830 2.428171 GCACCACTTCAATGTATGCCAT 59.572 45.455 0.00 0.00 34.36 4.40
1864 2831 1.818060 GCACCACTTCAATGTATGCCA 59.182 47.619 0.00 0.00 0.00 4.92
1865 2832 1.818060 TGCACCACTTCAATGTATGCC 59.182 47.619 0.00 0.00 33.12 4.40
1866 2833 3.574284 TTGCACCACTTCAATGTATGC 57.426 42.857 0.00 0.00 34.06 3.14
1867 2834 4.681025 GTGTTTGCACCACTTCAATGTATG 59.319 41.667 8.16 0.00 39.61 2.39
1868 2835 4.584325 AGTGTTTGCACCACTTCAATGTAT 59.416 37.500 11.50 0.00 46.35 2.29
1869 2836 3.951037 AGTGTTTGCACCACTTCAATGTA 59.049 39.130 11.50 0.00 46.35 2.29
1870 2837 2.760092 AGTGTTTGCACCACTTCAATGT 59.240 40.909 11.50 0.00 46.35 2.71
1871 2838 3.441496 AGTGTTTGCACCACTTCAATG 57.559 42.857 11.50 0.00 46.35 2.82
1877 2844 0.684153 AGCCAAGTGTTTGCACCACT 60.684 50.000 11.50 11.50 46.35 4.00
1878 2845 0.175531 AAGCCAAGTGTTTGCACCAC 59.824 50.000 7.47 7.47 46.35 4.16
1879 2846 0.175302 CAAGCCAAGTGTTTGCACCA 59.825 50.000 0.00 0.00 46.35 4.17
1880 2847 0.530431 CCAAGCCAAGTGTTTGCACC 60.530 55.000 0.00 0.00 46.35 5.01
1881 2848 0.530431 CCCAAGCCAAGTGTTTGCAC 60.530 55.000 0.00 0.00 45.57 4.57
1882 2849 0.975040 ACCCAAGCCAAGTGTTTGCA 60.975 50.000 0.00 0.00 32.79 4.08
1883 2850 0.530431 CACCCAAGCCAAGTGTTTGC 60.530 55.000 0.00 0.00 32.79 3.68
1884 2851 0.823460 ACACCCAAGCCAAGTGTTTG 59.177 50.000 0.00 0.00 41.86 2.93
1885 2852 0.823460 CACACCCAAGCCAAGTGTTT 59.177 50.000 0.00 0.00 42.65 2.83
1886 2853 1.675720 GCACACCCAAGCCAAGTGTT 61.676 55.000 0.00 0.00 42.65 3.32
1887 2854 2.127232 GCACACCCAAGCCAAGTGT 61.127 57.895 0.00 0.00 45.31 3.55
1888 2855 1.674764 TTGCACACCCAAGCCAAGTG 61.675 55.000 0.00 0.00 37.53 3.16
1889 2856 0.975040 TTTGCACACCCAAGCCAAGT 60.975 50.000 0.00 0.00 0.00 3.16
1890 2857 0.393820 ATTTGCACACCCAAGCCAAG 59.606 50.000 0.00 0.00 0.00 3.61
1891 2858 1.709578 TATTTGCACACCCAAGCCAA 58.290 45.000 0.00 0.00 0.00 4.52
1892 2859 1.549620 CATATTTGCACACCCAAGCCA 59.450 47.619 0.00 0.00 0.00 4.75
1893 2860 1.134729 CCATATTTGCACACCCAAGCC 60.135 52.381 0.00 0.00 0.00 4.35
1894 2861 1.550072 ACCATATTTGCACACCCAAGC 59.450 47.619 0.00 0.00 0.00 4.01
1895 2862 2.674747 GCACCATATTTGCACACCCAAG 60.675 50.000 0.00 0.00 39.93 3.61
1896 2863 1.274728 GCACCATATTTGCACACCCAA 59.725 47.619 0.00 0.00 39.93 4.12
1897 2864 0.894141 GCACCATATTTGCACACCCA 59.106 50.000 0.00 0.00 39.93 4.51
1898 2865 1.185315 AGCACCATATTTGCACACCC 58.815 50.000 8.45 0.00 42.83 4.61
1899 2866 4.097741 TGATTAGCACCATATTTGCACACC 59.902 41.667 8.45 0.00 42.83 4.16
1900 2867 5.036737 GTGATTAGCACCATATTTGCACAC 58.963 41.667 8.45 8.46 42.83 3.82
1901 2868 5.247507 GTGATTAGCACCATATTTGCACA 57.752 39.130 8.45 0.00 42.83 4.57
1914 2881 4.517453 GGGTGTGTACAAAAGTGATTAGCA 59.483 41.667 0.00 0.00 0.00 3.49
1915 2882 4.378046 CGGGTGTGTACAAAAGTGATTAGC 60.378 45.833 0.00 0.00 0.00 3.09
1916 2883 4.378046 GCGGGTGTGTACAAAAGTGATTAG 60.378 45.833 0.00 0.00 0.00 1.73
1917 2884 3.499157 GCGGGTGTGTACAAAAGTGATTA 59.501 43.478 0.00 0.00 0.00 1.75
1918 2885 2.292292 GCGGGTGTGTACAAAAGTGATT 59.708 45.455 0.00 0.00 0.00 2.57
1919 2886 1.877443 GCGGGTGTGTACAAAAGTGAT 59.123 47.619 0.00 0.00 0.00 3.06
1920 2887 1.301423 GCGGGTGTGTACAAAAGTGA 58.699 50.000 0.00 0.00 0.00 3.41
1921 2888 1.018148 TGCGGGTGTGTACAAAAGTG 58.982 50.000 0.00 0.00 0.00 3.16
1922 2889 1.402613 GTTGCGGGTGTGTACAAAAGT 59.597 47.619 0.00 0.00 0.00 2.66
1923 2890 1.402259 TGTTGCGGGTGTGTACAAAAG 59.598 47.619 0.00 0.00 0.00 2.27
1924 2891 1.132643 GTGTTGCGGGTGTGTACAAAA 59.867 47.619 0.00 0.00 0.00 2.44
1925 2892 0.733729 GTGTTGCGGGTGTGTACAAA 59.266 50.000 0.00 0.00 0.00 2.83
1926 2893 0.107606 AGTGTTGCGGGTGTGTACAA 60.108 50.000 0.00 0.00 0.00 2.41
1927 2894 0.812014 CAGTGTTGCGGGTGTGTACA 60.812 55.000 0.00 0.00 0.00 2.90
1928 2895 0.531090 TCAGTGTTGCGGGTGTGTAC 60.531 55.000 0.00 0.00 0.00 2.90
1929 2896 0.531090 GTCAGTGTTGCGGGTGTGTA 60.531 55.000 0.00 0.00 0.00 2.90
1930 2897 1.817941 GTCAGTGTTGCGGGTGTGT 60.818 57.895 0.00 0.00 0.00 3.72
1931 2898 1.372838 TTGTCAGTGTTGCGGGTGTG 61.373 55.000 0.00 0.00 0.00 3.82
1932 2899 0.678366 TTTGTCAGTGTTGCGGGTGT 60.678 50.000 0.00 0.00 0.00 4.16
1933 2900 0.029300 CTTTGTCAGTGTTGCGGGTG 59.971 55.000 0.00 0.00 0.00 4.61
1934 2901 1.724582 GCTTTGTCAGTGTTGCGGGT 61.725 55.000 0.00 0.00 0.00 5.28
1935 2902 1.008538 GCTTTGTCAGTGTTGCGGG 60.009 57.895 0.00 0.00 0.00 6.13
1936 2903 1.008538 GGCTTTGTCAGTGTTGCGG 60.009 57.895 0.00 0.00 0.00 5.69
1937 2904 0.317269 CAGGCTTTGTCAGTGTTGCG 60.317 55.000 0.00 0.00 0.00 4.85
1938 2905 0.595825 GCAGGCTTTGTCAGTGTTGC 60.596 55.000 0.00 0.00 0.00 4.17
1939 2906 0.031178 GGCAGGCTTTGTCAGTGTTG 59.969 55.000 0.00 0.00 0.00 3.33
1940 2907 0.395586 TGGCAGGCTTTGTCAGTGTT 60.396 50.000 0.00 0.00 36.23 3.32
1941 2908 1.227102 TGGCAGGCTTTGTCAGTGT 59.773 52.632 0.00 0.00 36.23 3.55
1942 2909 4.162592 TGGCAGGCTTTGTCAGTG 57.837 55.556 0.00 0.00 36.23 3.66
1945 2912 2.195411 TGCTGGCAGGCTTTGTCA 59.805 55.556 17.64 0.15 39.60 3.58
1946 2913 2.647297 GTGCTGGCAGGCTTTGTC 59.353 61.111 17.64 0.00 0.00 3.18
1947 2914 3.289834 CGTGCTGGCAGGCTTTGT 61.290 61.111 17.64 0.00 0.00 2.83
1948 2915 4.047059 CCGTGCTGGCAGGCTTTG 62.047 66.667 17.64 3.27 0.00 2.77
1965 2932 2.437002 TAACAATGGGGCCGACGC 60.437 61.111 0.00 0.00 0.00 5.19
1966 2933 1.078708 ACTAACAATGGGGCCGACG 60.079 57.895 0.00 0.00 0.00 5.12
1967 2934 0.035820 TCACTAACAATGGGGCCGAC 60.036 55.000 0.00 0.00 0.00 4.79
1968 2935 0.035820 GTCACTAACAATGGGGCCGA 60.036 55.000 0.00 0.00 0.00 5.54
1969 2936 1.029947 GGTCACTAACAATGGGGCCG 61.030 60.000 0.00 0.00 0.00 6.13
1970 2937 0.039035 TGGTCACTAACAATGGGGCC 59.961 55.000 0.00 0.00 0.00 5.80
1971 2938 1.917872 TTGGTCACTAACAATGGGGC 58.082 50.000 0.00 0.00 0.00 5.80
1972 2939 3.226777 TGTTTGGTCACTAACAATGGGG 58.773 45.455 0.00 0.00 38.92 4.96
1973 2940 4.927978 TTGTTTGGTCACTAACAATGGG 57.072 40.909 5.11 0.00 43.75 4.00
1978 2945 5.883115 TGTCTTCATTGTTTGGTCACTAACA 59.117 36.000 0.00 0.00 39.85 2.41
1979 2946 6.371809 TGTCTTCATTGTTTGGTCACTAAC 57.628 37.500 0.00 0.00 33.74 2.34
1980 2947 6.039270 CCTTGTCTTCATTGTTTGGTCACTAA 59.961 38.462 0.00 0.00 0.00 2.24
1981 2948 5.530915 CCTTGTCTTCATTGTTTGGTCACTA 59.469 40.000 0.00 0.00 0.00 2.74
1982 2949 4.339247 CCTTGTCTTCATTGTTTGGTCACT 59.661 41.667 0.00 0.00 0.00 3.41
1983 2950 4.097892 ACCTTGTCTTCATTGTTTGGTCAC 59.902 41.667 0.00 0.00 0.00 3.67
1984 2951 4.097741 CACCTTGTCTTCATTGTTTGGTCA 59.902 41.667 0.00 0.00 0.00 4.02
1985 2952 4.097892 ACACCTTGTCTTCATTGTTTGGTC 59.902 41.667 0.00 0.00 0.00 4.02
1986 2953 4.023291 ACACCTTGTCTTCATTGTTTGGT 58.977 39.130 0.00 0.00 0.00 3.67
1987 2954 4.142182 ACACACCTTGTCTTCATTGTTTGG 60.142 41.667 0.00 0.00 29.79 3.28
1988 2955 4.799949 CACACACCTTGTCTTCATTGTTTG 59.200 41.667 0.00 0.00 35.67 2.93
1989 2956 4.142182 CCACACACCTTGTCTTCATTGTTT 60.142 41.667 0.00 0.00 35.67 2.83
1990 2957 3.381272 CCACACACCTTGTCTTCATTGTT 59.619 43.478 0.00 0.00 35.67 2.83
1991 2958 2.951642 CCACACACCTTGTCTTCATTGT 59.048 45.455 0.00 0.00 35.67 2.71
1992 2959 2.294233 CCCACACACCTTGTCTTCATTG 59.706 50.000 0.00 0.00 35.67 2.82
1993 2960 2.091885 ACCCACACACCTTGTCTTCATT 60.092 45.455 0.00 0.00 35.67 2.57
1994 2961 1.494721 ACCCACACACCTTGTCTTCAT 59.505 47.619 0.00 0.00 35.67 2.57
1995 2962 0.916086 ACCCACACACCTTGTCTTCA 59.084 50.000 0.00 0.00 35.67 3.02
1996 2963 2.052782 AACCCACACACCTTGTCTTC 57.947 50.000 0.00 0.00 35.67 2.87
1997 2964 2.525105 AAACCCACACACCTTGTCTT 57.475 45.000 0.00 0.00 35.67 3.01
1998 2965 2.525105 AAAACCCACACACCTTGTCT 57.475 45.000 0.00 0.00 35.67 3.41
1999 2966 2.159156 GGAAAAACCCACACACCTTGTC 60.159 50.000 0.00 0.00 35.67 3.18
2000 2967 1.828595 GGAAAAACCCACACACCTTGT 59.171 47.619 0.00 0.00 39.97 3.16
2001 2968 2.595124 GGAAAAACCCACACACCTTG 57.405 50.000 0.00 0.00 0.00 3.61
2026 2993 5.265989 AGACAAGTGGGTTTGTAGGAAAAA 58.734 37.500 0.00 0.00 41.15 1.94
2027 2994 4.862371 AGACAAGTGGGTTTGTAGGAAAA 58.138 39.130 0.00 0.00 41.15 2.29
2028 2995 4.513406 AGACAAGTGGGTTTGTAGGAAA 57.487 40.909 0.00 0.00 41.15 3.13
2029 2996 4.165372 AGAAGACAAGTGGGTTTGTAGGAA 59.835 41.667 0.00 0.00 41.15 3.36
2030 2997 3.714798 AGAAGACAAGTGGGTTTGTAGGA 59.285 43.478 0.00 0.00 41.15 2.94
2031 2998 4.086706 AGAAGACAAGTGGGTTTGTAGG 57.913 45.455 0.00 0.00 41.15 3.18
2032 2999 7.745620 AAATAGAAGACAAGTGGGTTTGTAG 57.254 36.000 0.00 0.00 41.15 2.74
2033 3000 8.528044 AAAAATAGAAGACAAGTGGGTTTGTA 57.472 30.769 0.00 0.00 41.15 2.41
2034 3001 7.418337 AAAAATAGAAGACAAGTGGGTTTGT 57.582 32.000 0.00 0.00 43.61 2.83
2056 3023 3.287222 CTGTCAGGGTCTTGGTGAAAAA 58.713 45.455 0.00 0.00 0.00 1.94
2057 3024 2.422803 CCTGTCAGGGTCTTGGTGAAAA 60.423 50.000 11.46 0.00 0.00 2.29
2058 3025 1.142870 CCTGTCAGGGTCTTGGTGAAA 59.857 52.381 11.46 0.00 0.00 2.69
2059 3026 0.764890 CCTGTCAGGGTCTTGGTGAA 59.235 55.000 11.46 0.00 0.00 3.18
2060 3027 0.399949 ACCTGTCAGGGTCTTGGTGA 60.400 55.000 23.06 0.00 40.58 4.02
2061 3028 0.250467 CACCTGTCAGGGTCTTGGTG 60.250 60.000 23.06 7.27 40.58 4.17
2062 3029 1.418908 CCACCTGTCAGGGTCTTGGT 61.419 60.000 23.06 0.00 40.58 3.67
2063 3030 1.376466 CCACCTGTCAGGGTCTTGG 59.624 63.158 23.06 16.55 40.58 3.61
2064 3031 1.376466 CCCACCTGTCAGGGTCTTG 59.624 63.158 23.06 11.56 40.58 3.02
2065 3032 3.906980 CCCACCTGTCAGGGTCTT 58.093 61.111 23.06 0.00 40.58 3.01
2077 3044 1.302832 CTCACAGCAAGGACCCACC 60.303 63.158 0.00 0.00 39.35 4.61
2078 3045 1.968540 GCTCACAGCAAGGACCCAC 60.969 63.158 0.00 0.00 41.89 4.61
2079 3046 2.431683 GCTCACAGCAAGGACCCA 59.568 61.111 0.00 0.00 41.89 4.51
2103 3070 9.435688 GCACCCTTTCTATGTTCAATTATTTTT 57.564 29.630 0.00 0.00 0.00 1.94
2104 3071 7.759433 CGCACCCTTTCTATGTTCAATTATTTT 59.241 33.333 0.00 0.00 0.00 1.82
2105 3072 7.093945 ACGCACCCTTTCTATGTTCAATTATTT 60.094 33.333 0.00 0.00 0.00 1.40
2106 3073 6.377146 ACGCACCCTTTCTATGTTCAATTATT 59.623 34.615 0.00 0.00 0.00 1.40
2107 3074 5.885912 ACGCACCCTTTCTATGTTCAATTAT 59.114 36.000 0.00 0.00 0.00 1.28
2108 3075 5.250200 ACGCACCCTTTCTATGTTCAATTA 58.750 37.500 0.00 0.00 0.00 1.40
2109 3076 4.079253 ACGCACCCTTTCTATGTTCAATT 58.921 39.130 0.00 0.00 0.00 2.32
2110 3077 3.686016 ACGCACCCTTTCTATGTTCAAT 58.314 40.909 0.00 0.00 0.00 2.57
2111 3078 3.134574 ACGCACCCTTTCTATGTTCAA 57.865 42.857 0.00 0.00 0.00 2.69
2112 3079 2.851263 ACGCACCCTTTCTATGTTCA 57.149 45.000 0.00 0.00 0.00 3.18
2113 3080 4.094442 CCTAAACGCACCCTTTCTATGTTC 59.906 45.833 0.00 0.00 0.00 3.18
2114 3081 4.007659 CCTAAACGCACCCTTTCTATGTT 58.992 43.478 0.00 0.00 0.00 2.71
2115 3082 3.008704 ACCTAAACGCACCCTTTCTATGT 59.991 43.478 0.00 0.00 0.00 2.29
2116 3083 3.606687 ACCTAAACGCACCCTTTCTATG 58.393 45.455 0.00 0.00 0.00 2.23
2117 3084 3.994931 ACCTAAACGCACCCTTTCTAT 57.005 42.857 0.00 0.00 0.00 1.98
2118 3085 3.775261 AACCTAAACGCACCCTTTCTA 57.225 42.857 0.00 0.00 0.00 2.10
2119 3086 2.651382 AACCTAAACGCACCCTTTCT 57.349 45.000 0.00 0.00 0.00 2.52
2120 3087 2.619646 TGAAACCTAAACGCACCCTTTC 59.380 45.455 0.00 0.00 0.00 2.62
2121 3088 2.657143 TGAAACCTAAACGCACCCTTT 58.343 42.857 0.00 0.00 0.00 3.11
2122 3089 2.351706 TGAAACCTAAACGCACCCTT 57.648 45.000 0.00 0.00 0.00 3.95
2123 3090 2.351706 TTGAAACCTAAACGCACCCT 57.648 45.000 0.00 0.00 0.00 4.34
2124 3091 2.860971 GCTTTGAAACCTAAACGCACCC 60.861 50.000 0.00 0.00 0.00 4.61
2125 3092 2.223618 TGCTTTGAAACCTAAACGCACC 60.224 45.455 0.00 0.00 0.00 5.01
2126 3093 3.042887 CTGCTTTGAAACCTAAACGCAC 58.957 45.455 0.00 0.00 0.00 5.34
2127 3094 2.542824 GCTGCTTTGAAACCTAAACGCA 60.543 45.455 0.00 0.00 0.00 5.24
2128 3095 2.051423 GCTGCTTTGAAACCTAAACGC 58.949 47.619 0.00 0.00 0.00 4.84
2129 3096 3.626028 AGCTGCTTTGAAACCTAAACG 57.374 42.857 0.00 0.00 0.00 3.60
2130 3097 4.519350 AGGTAGCTGCTTTGAAACCTAAAC 59.481 41.667 17.25 1.28 35.61 2.01
2131 3098 4.725490 AGGTAGCTGCTTTGAAACCTAAA 58.275 39.130 17.25 0.00 35.61 1.85
2132 3099 4.324267 GAGGTAGCTGCTTTGAAACCTAA 58.676 43.478 18.41 0.00 37.47 2.69
2133 3100 3.307480 GGAGGTAGCTGCTTTGAAACCTA 60.307 47.826 18.41 0.00 37.47 3.08
2134 3101 2.553247 GGAGGTAGCTGCTTTGAAACCT 60.553 50.000 18.43 18.43 39.99 3.50
2135 3102 1.813178 GGAGGTAGCTGCTTTGAAACC 59.187 52.381 7.79 9.11 0.00 3.27
2136 3103 2.504367 TGGAGGTAGCTGCTTTGAAAC 58.496 47.619 14.78 0.00 0.00 2.78
2137 3104 2.949177 TGGAGGTAGCTGCTTTGAAA 57.051 45.000 14.78 0.00 0.00 2.69
2138 3105 2.949177 TTGGAGGTAGCTGCTTTGAA 57.051 45.000 14.78 0.00 0.00 2.69
2139 3106 3.439857 AATTGGAGGTAGCTGCTTTGA 57.560 42.857 14.78 0.00 0.00 2.69
2140 3107 5.643379 TTAAATTGGAGGTAGCTGCTTTG 57.357 39.130 14.78 0.00 0.00 2.77
2141 3108 5.716703 ACATTAAATTGGAGGTAGCTGCTTT 59.283 36.000 14.78 9.90 0.00 3.51
2142 3109 5.126061 CACATTAAATTGGAGGTAGCTGCTT 59.874 40.000 14.78 3.55 0.00 3.91
2143 3110 4.641989 CACATTAAATTGGAGGTAGCTGCT 59.358 41.667 14.78 7.57 0.00 4.24
2144 3111 4.399303 ACACATTAAATTGGAGGTAGCTGC 59.601 41.667 6.48 6.48 0.00 5.25
2145 3112 5.066505 GGACACATTAAATTGGAGGTAGCTG 59.933 44.000 0.00 0.00 0.00 4.24
2146 3113 5.193679 GGACACATTAAATTGGAGGTAGCT 58.806 41.667 0.00 0.00 0.00 3.32
2147 3114 4.035208 CGGACACATTAAATTGGAGGTAGC 59.965 45.833 0.00 0.00 0.00 3.58
2148 3115 4.035208 GCGGACACATTAAATTGGAGGTAG 59.965 45.833 0.00 0.00 0.00 3.18
2149 3116 3.942748 GCGGACACATTAAATTGGAGGTA 59.057 43.478 0.00 0.00 0.00 3.08
2150 3117 2.752903 GCGGACACATTAAATTGGAGGT 59.247 45.455 0.00 0.00 0.00 3.85
2151 3118 3.016736 AGCGGACACATTAAATTGGAGG 58.983 45.455 0.00 0.00 0.00 4.30
2152 3119 3.731867 GCAGCGGACACATTAAATTGGAG 60.732 47.826 0.00 0.00 0.00 3.86
2153 3120 2.163412 GCAGCGGACACATTAAATTGGA 59.837 45.455 0.00 0.00 0.00 3.53
2154 3121 2.164219 AGCAGCGGACACATTAAATTGG 59.836 45.455 0.00 0.00 0.00 3.16
2155 3122 3.492421 AGCAGCGGACACATTAAATTG 57.508 42.857 0.00 0.00 0.00 2.32
2156 3123 4.142469 GGTTAGCAGCGGACACATTAAATT 60.142 41.667 3.98 0.00 0.00 1.82
2157 3124 3.377172 GGTTAGCAGCGGACACATTAAAT 59.623 43.478 3.98 0.00 0.00 1.40
2158 3125 2.745281 GGTTAGCAGCGGACACATTAAA 59.255 45.455 3.98 0.00 0.00 1.52
2159 3126 2.289756 TGGTTAGCAGCGGACACATTAA 60.290 45.455 3.98 0.00 0.00 1.40
2160 3127 1.276705 TGGTTAGCAGCGGACACATTA 59.723 47.619 3.98 0.00 0.00 1.90
2161 3128 0.036164 TGGTTAGCAGCGGACACATT 59.964 50.000 3.98 0.00 0.00 2.71
2162 3129 0.673644 GTGGTTAGCAGCGGACACAT 60.674 55.000 7.42 0.00 0.00 3.21
2163 3130 1.301401 GTGGTTAGCAGCGGACACA 60.301 57.895 7.42 0.20 0.00 3.72
2164 3131 2.033194 GGTGGTTAGCAGCGGACAC 61.033 63.158 0.00 4.30 0.00 3.67
2165 3132 2.214216 AGGTGGTTAGCAGCGGACA 61.214 57.895 7.96 0.00 0.00 4.02
2166 3133 1.741770 CAGGTGGTTAGCAGCGGAC 60.742 63.158 7.90 0.00 0.00 4.79
2167 3134 1.911269 TCAGGTGGTTAGCAGCGGA 60.911 57.895 11.81 11.81 0.00 5.54
2168 3135 1.741770 GTCAGGTGGTTAGCAGCGG 60.742 63.158 7.96 7.65 0.00 5.52
2169 3136 0.602638 TTGTCAGGTGGTTAGCAGCG 60.603 55.000 7.96 3.91 0.00 5.18
2170 3137 1.604604 TTTGTCAGGTGGTTAGCAGC 58.395 50.000 5.40 5.40 0.00 5.25
2171 3138 4.278170 TGATTTTTGTCAGGTGGTTAGCAG 59.722 41.667 0.00 0.00 0.00 4.24
2172 3139 4.211125 TGATTTTTGTCAGGTGGTTAGCA 58.789 39.130 0.00 0.00 0.00 3.49
2173 3140 4.846779 TGATTTTTGTCAGGTGGTTAGC 57.153 40.909 0.00 0.00 0.00 3.09
2174 3141 7.040755 TGTGTATGATTTTTGTCAGGTGGTTAG 60.041 37.037 0.00 0.00 0.00 2.34
2175 3142 6.773200 TGTGTATGATTTTTGTCAGGTGGTTA 59.227 34.615 0.00 0.00 0.00 2.85
2176 3143 5.596361 TGTGTATGATTTTTGTCAGGTGGTT 59.404 36.000 0.00 0.00 0.00 3.67
2177 3144 5.136828 TGTGTATGATTTTTGTCAGGTGGT 58.863 37.500 0.00 0.00 0.00 4.16
2178 3145 5.703978 TGTGTATGATTTTTGTCAGGTGG 57.296 39.130 0.00 0.00 0.00 4.61
2179 3146 7.202526 AGTTTGTGTATGATTTTTGTCAGGTG 58.797 34.615 0.00 0.00 0.00 4.00
2180 3147 7.346751 AGTTTGTGTATGATTTTTGTCAGGT 57.653 32.000 0.00 0.00 0.00 4.00
2181 3148 9.912634 ATAAGTTTGTGTATGATTTTTGTCAGG 57.087 29.630 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.