Multiple sequence alignment - TraesCS1A01G020500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G020500 chr1A 100.000 4082 0 0 1 4082 10066063 10070144 0.000000e+00 7539.0
1 TraesCS1A01G020500 chr1A 87.250 400 51 0 1280 1679 323643608 323643209 1.340000e-124 457.0
2 TraesCS1A01G020500 chr1D 89.498 3447 196 63 680 4080 8712370 8715696 0.000000e+00 4207.0
3 TraesCS1A01G020500 chr1D 85.945 619 87 0 1968 2586 252528696 252528078 0.000000e+00 662.0
4 TraesCS1A01G020500 chr1D 87.250 400 51 0 1280 1679 252529222 252528823 1.340000e-124 457.0
5 TraesCS1A01G020500 chr1D 82.231 242 15 11 17 254 8711818 8712035 2.510000e-42 183.0
6 TraesCS1A01G020500 chr1D 93.750 64 4 0 1105 1168 252529387 252529324 3.360000e-16 97.1
7 TraesCS1A01G020500 chr1B 94.668 1294 47 12 1907 3187 11858963 11860247 0.000000e+00 1988.0
8 TraesCS1A01G020500 chr1B 87.123 1126 78 33 772 1868 11857882 11858969 0.000000e+00 1214.0
9 TraesCS1A01G020500 chr1B 86.914 619 81 0 1968 2586 360808768 360809386 0.000000e+00 695.0
10 TraesCS1A01G020500 chr1B 91.875 480 30 6 3608 4080 11860605 11861082 0.000000e+00 662.0
11 TraesCS1A01G020500 chr1B 86.811 417 52 3 1265 1679 360808226 360808641 2.870000e-126 462.0
12 TraesCS1A01G020500 chr1B 95.455 44 2 0 621 664 11857755 11857798 2.040000e-08 71.3
13 TraesCS1A01G020500 chr5D 86.356 623 85 0 1963 2585 210375313 210374691 0.000000e+00 680.0
14 TraesCS1A01G020500 chr5D 85.554 623 90 0 1965 2587 538789179 538788557 0.000000e+00 652.0
15 TraesCS1A01G020500 chr5D 84.000 400 64 0 1280 1679 538789667 538789268 6.400000e-103 385.0
16 TraesCS1A01G020500 chr5D 86.391 169 17 4 3242 3405 35552967 35553134 3.240000e-41 180.0
17 TraesCS1A01G020500 chr5D 95.312 64 3 0 1105 1168 210375928 210375865 7.220000e-18 102.0
18 TraesCS1A01G020500 chr5B 86.190 630 86 1 1965 2594 680360031 680359403 0.000000e+00 680.0
19 TraesCS1A01G020500 chr5B 86.196 623 86 0 1963 2585 223984469 223983847 0.000000e+00 675.0
20 TraesCS1A01G020500 chr5B 83.942 411 65 1 1280 1689 680360522 680360112 3.820000e-105 392.0
21 TraesCS1A01G020500 chr5B 95.312 64 3 0 1105 1168 223985083 223985020 7.220000e-18 102.0
22 TraesCS1A01G020500 chr5A 85.875 623 88 0 1963 2585 272132572 272131950 0.000000e+00 664.0
23 TraesCS1A01G020500 chr5A 85.464 399 58 0 1281 1679 272133044 272132646 2.270000e-112 416.0
24 TraesCS1A01G020500 chr5A 87.195 164 15 3 3248 3406 320214405 320214243 9.010000e-42 182.0
25 TraesCS1A01G020500 chr5A 95.312 64 3 0 1105 1168 272133183 272133120 7.220000e-18 102.0
26 TraesCS1A01G020500 chr4A 84.250 400 63 0 1280 1679 629859028 629859427 1.380000e-104 390.0
27 TraesCS1A01G020500 chr4A 85.549 173 19 4 3244 3411 97529990 97530161 4.190000e-40 176.0
28 TraesCS1A01G020500 chr2A 88.953 172 13 3 3247 3413 419206815 419206985 1.490000e-49 207.0
29 TraesCS1A01G020500 chr2D 87.425 167 16 1 3248 3409 340511635 340511469 1.940000e-43 187.0
30 TraesCS1A01G020500 chr7A 86.982 169 15 3 3244 3406 677696243 677696410 2.510000e-42 183.0
31 TraesCS1A01G020500 chr3A 87.117 163 15 3 3248 3405 600920855 600921016 3.240000e-41 180.0
32 TraesCS1A01G020500 chr7D 86.310 168 16 4 3244 3406 183790259 183790424 4.190000e-40 176.0
33 TraesCS1A01G020500 chr7D 78.707 263 26 18 571 820 188034525 188034770 9.140000e-32 148.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G020500 chr1A 10066063 10070144 4081 False 7539.000000 7539 100.000000 1 4082 1 chr1A.!!$F1 4081
1 TraesCS1A01G020500 chr1D 8711818 8715696 3878 False 2195.000000 4207 85.864500 17 4080 2 chr1D.!!$F1 4063
2 TraesCS1A01G020500 chr1D 252528078 252529387 1309 True 405.366667 662 88.981667 1105 2586 3 chr1D.!!$R1 1481
3 TraesCS1A01G020500 chr1B 11857755 11861082 3327 False 983.825000 1988 92.280250 621 4080 4 chr1B.!!$F1 3459
4 TraesCS1A01G020500 chr1B 360808226 360809386 1160 False 578.500000 695 86.862500 1265 2586 2 chr1B.!!$F2 1321
5 TraesCS1A01G020500 chr5D 538788557 538789667 1110 True 518.500000 652 84.777000 1280 2587 2 chr5D.!!$R2 1307
6 TraesCS1A01G020500 chr5D 210374691 210375928 1237 True 391.000000 680 90.834000 1105 2585 2 chr5D.!!$R1 1480
7 TraesCS1A01G020500 chr5B 680359403 680360522 1119 True 536.000000 680 85.066000 1280 2594 2 chr5B.!!$R2 1314
8 TraesCS1A01G020500 chr5B 223983847 223985083 1236 True 388.500000 675 90.754000 1105 2585 2 chr5B.!!$R1 1480
9 TraesCS1A01G020500 chr5A 272131950 272133183 1233 True 394.000000 664 88.883667 1105 2585 3 chr5A.!!$R2 1480

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
722 775 0.108186 CTGCTTACGCCATGGTCTCA 60.108 55.0 14.67 2.68 34.43 3.27 F
995 1069 0.250295 GCACACCTGTAGCTGTTCCA 60.250 55.0 0.00 0.00 0.00 3.53 F
2748 2865 0.103937 GTGCTTCTGATCTCCGGGAG 59.896 60.0 18.25 18.25 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2714 2831 1.557099 AGCACTTCCTGTGGACGATA 58.443 50.000 0.00 0.00 46.27 2.92 R
2750 2867 2.694829 GATGATAACGGCGGCGGAGT 62.695 60.000 35.05 21.43 0.00 3.85 R
3652 3933 1.918262 TGCTCAGATTCATCAGGGGTT 59.082 47.619 0.00 0.00 0.00 4.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.872197 CTCCTCCGATCGCATCTCCC 61.872 65.000 10.32 0.00 0.00 4.30
21 22 1.905843 CTCCGATCGCATCTCCCCT 60.906 63.158 10.32 0.00 0.00 4.79
96 101 1.309499 ACCAACCTCTCTCGCTCTCG 61.309 60.000 0.00 0.00 0.00 4.04
97 102 1.226547 CAACCTCTCTCGCTCTCGC 60.227 63.158 0.00 0.00 35.26 5.03
98 103 1.377987 AACCTCTCTCGCTCTCGCT 60.378 57.895 0.00 0.00 35.26 4.93
99 104 1.373590 AACCTCTCTCGCTCTCGCTC 61.374 60.000 0.00 0.00 35.26 5.03
100 105 2.542907 CCTCTCTCGCTCTCGCTCC 61.543 68.421 0.00 0.00 35.26 4.70
101 106 2.515057 TCTCTCGCTCTCGCTCCC 60.515 66.667 0.00 0.00 35.26 4.30
102 107 3.591835 CTCTCGCTCTCGCTCCCC 61.592 72.222 0.00 0.00 35.26 4.81
107 112 3.223589 GCTCTCGCTCCCCCTCTC 61.224 72.222 0.00 0.00 0.00 3.20
108 113 2.600731 CTCTCGCTCCCCCTCTCT 59.399 66.667 0.00 0.00 0.00 3.10
109 114 1.827789 CTCTCGCTCCCCCTCTCTG 60.828 68.421 0.00 0.00 0.00 3.35
110 115 3.535962 CTCGCTCCCCCTCTCTGC 61.536 72.222 0.00 0.00 0.00 4.26
114 119 4.787280 CTCCCCCTCTCTGCCGGT 62.787 72.222 1.90 0.00 0.00 5.28
115 120 3.352748 TCCCCCTCTCTGCCGGTA 61.353 66.667 1.90 0.00 0.00 4.02
119 124 1.182385 CCCCTCTCTGCCGGTATCTC 61.182 65.000 1.90 0.00 0.00 2.75
130 135 2.554893 GCCGGTATCTCTCTCTTGGTAG 59.445 54.545 1.90 0.00 0.00 3.18
131 136 2.554893 CCGGTATCTCTCTCTTGGTAGC 59.445 54.545 0.00 0.00 0.00 3.58
132 137 3.215151 CGGTATCTCTCTCTTGGTAGCA 58.785 50.000 0.00 0.00 0.00 3.49
133 138 3.252215 CGGTATCTCTCTCTTGGTAGCAG 59.748 52.174 0.00 0.00 0.00 4.24
151 156 2.641305 CAGCCTTGCTAGATCTTGCTT 58.359 47.619 25.85 7.52 36.40 3.91
157 162 0.315706 GCTAGATCTTGCTTTGCGCG 60.316 55.000 20.08 0.00 43.27 6.86
244 249 0.685660 GGAAACTCGGGGACTTCACT 59.314 55.000 0.00 0.00 0.00 3.41
254 259 2.147150 GGGACTTCACTGTCTTCTTGC 58.853 52.381 0.00 0.00 37.16 4.01
256 261 2.474816 GACTTCACTGTCTTCTTGCGT 58.525 47.619 0.00 0.00 34.39 5.24
259 264 0.318699 TCACTGTCTTCTTGCGTCCG 60.319 55.000 0.00 0.00 0.00 4.79
261 266 1.006102 CTGTCTTCTTGCGTCCGGT 60.006 57.895 0.00 0.00 0.00 5.28
262 267 0.600255 CTGTCTTCTTGCGTCCGGTT 60.600 55.000 0.00 0.00 0.00 4.44
263 268 0.599204 TGTCTTCTTGCGTCCGGTTC 60.599 55.000 0.00 0.00 0.00 3.62
265 270 0.391597 TCTTCTTGCGTCCGGTTCTT 59.608 50.000 0.00 0.00 0.00 2.52
266 271 0.512952 CTTCTTGCGTCCGGTTCTTG 59.487 55.000 0.00 0.00 0.00 3.02
268 273 0.599204 TCTTGCGTCCGGTTCTTGTC 60.599 55.000 0.00 0.00 0.00 3.18
269 274 0.600255 CTTGCGTCCGGTTCTTGTCT 60.600 55.000 0.00 0.00 0.00 3.41
270 275 0.599204 TTGCGTCCGGTTCTTGTCTC 60.599 55.000 0.00 0.00 0.00 3.36
271 276 1.737008 GCGTCCGGTTCTTGTCTCC 60.737 63.158 0.00 0.00 0.00 3.71
272 277 1.443872 CGTCCGGTTCTTGTCTCCG 60.444 63.158 0.00 0.00 43.30 4.63
274 279 0.666577 GTCCGGTTCTTGTCTCCGTG 60.667 60.000 0.00 0.00 42.30 4.94
275 280 2.027625 CCGGTTCTTGTCTCCGTGC 61.028 63.158 0.00 0.00 42.30 5.34
276 281 2.372690 CGGTTCTTGTCTCCGTGCG 61.373 63.158 0.00 0.00 39.51 5.34
277 282 1.300697 GGTTCTTGTCTCCGTGCGT 60.301 57.895 0.00 0.00 0.00 5.24
278 283 1.557443 GGTTCTTGTCTCCGTGCGTG 61.557 60.000 0.00 0.00 0.00 5.34
279 284 1.954146 TTCTTGTCTCCGTGCGTGC 60.954 57.895 0.00 0.00 0.00 5.34
280 285 3.767230 CTTGTCTCCGTGCGTGCG 61.767 66.667 0.00 0.00 0.00 5.34
301 306 2.742372 GTTGGTGGACGCTGCGAT 60.742 61.111 30.47 13.06 0.00 4.58
302 307 2.434185 TTGGTGGACGCTGCGATC 60.434 61.111 30.47 20.52 0.00 3.69
303 308 3.950794 TTGGTGGACGCTGCGATCC 62.951 63.158 30.47 27.69 35.37 3.36
340 345 1.004560 TGCCGCTTCTTGACTGGAG 60.005 57.895 0.00 0.00 0.00 3.86
344 349 1.075425 CGCTTCTTGACTGGAGCTCG 61.075 60.000 7.83 0.00 0.00 5.03
348 353 0.539669 TCTTGACTGGAGCTCGACCA 60.540 55.000 7.83 0.00 35.96 4.02
354 359 2.579738 GGAGCTCGACCAGTTCCC 59.420 66.667 7.83 0.00 44.98 3.97
355 360 2.182030 GAGCTCGACCAGTTCCCG 59.818 66.667 0.00 0.00 0.00 5.14
399 414 2.127232 GCGTTCGTTCCTTGCTGC 60.127 61.111 0.00 0.00 0.00 5.25
400 415 2.607892 GCGTTCGTTCCTTGCTGCT 61.608 57.895 0.00 0.00 0.00 4.24
402 417 1.869690 GTTCGTTCCTTGCTGCTCC 59.130 57.895 0.00 0.00 0.00 4.70
425 440 3.073101 AGCTCCCGGTTCCCGTAC 61.073 66.667 0.00 0.00 46.80 3.67
449 480 1.488705 TTGCTCGTCCATTCCCCTGT 61.489 55.000 0.00 0.00 0.00 4.00
451 482 0.322546 GCTCGTCCATTCCCCTGTTT 60.323 55.000 0.00 0.00 0.00 2.83
452 483 1.453155 CTCGTCCATTCCCCTGTTTG 58.547 55.000 0.00 0.00 0.00 2.93
453 484 0.768622 TCGTCCATTCCCCTGTTTGT 59.231 50.000 0.00 0.00 0.00 2.83
454 485 1.165270 CGTCCATTCCCCTGTTTGTC 58.835 55.000 0.00 0.00 0.00 3.18
455 486 1.545841 GTCCATTCCCCTGTTTGTCC 58.454 55.000 0.00 0.00 0.00 4.02
456 487 0.407918 TCCATTCCCCTGTTTGTCCC 59.592 55.000 0.00 0.00 0.00 4.46
459 490 0.481128 ATTCCCCTGTTTGTCCCGTT 59.519 50.000 0.00 0.00 0.00 4.44
460 491 0.466555 TTCCCCTGTTTGTCCCGTTG 60.467 55.000 0.00 0.00 0.00 4.10
461 492 2.561037 CCCCTGTTTGTCCCGTTGC 61.561 63.158 0.00 0.00 0.00 4.17
462 493 1.528309 CCCTGTTTGTCCCGTTGCT 60.528 57.895 0.00 0.00 0.00 3.91
465 496 1.515521 CTGTTTGTCCCGTTGCTCCC 61.516 60.000 0.00 0.00 0.00 4.30
466 497 2.281208 TTTGTCCCGTTGCTCCCG 60.281 61.111 0.00 0.00 0.00 5.14
474 505 4.681978 GTTGCTCCCGTGGTCGCT 62.682 66.667 0.00 0.00 35.54 4.93
478 509 4.477975 CTCCCGTGGTCGCTCGTC 62.478 72.222 0.00 0.00 35.54 4.20
482 513 4.175489 CGTGGTCGCTCGTCGGAT 62.175 66.667 0.00 0.00 39.05 4.18
483 514 2.816360 CGTGGTCGCTCGTCGGATA 61.816 63.158 0.00 0.00 39.05 2.59
484 515 1.298190 GTGGTCGCTCGTCGGATAC 60.298 63.158 0.00 0.00 39.05 2.24
486 517 2.475466 GGTCGCTCGTCGGATACCA 61.475 63.158 0.00 0.00 39.05 3.25
488 519 0.385723 GTCGCTCGTCGGATACCATC 60.386 60.000 0.00 0.00 39.05 3.51
489 520 1.081376 CGCTCGTCGGATACCATCC 60.081 63.158 0.00 0.00 46.22 3.51
500 531 3.490348 GGATACCATCCTGTGATTTGGG 58.510 50.000 0.00 0.00 46.19 4.12
501 532 3.117512 GGATACCATCCTGTGATTTGGGT 60.118 47.826 0.00 0.00 46.19 4.51
502 533 4.104102 GGATACCATCCTGTGATTTGGGTA 59.896 45.833 0.00 0.00 46.19 3.69
503 534 3.366052 ACCATCCTGTGATTTGGGTAC 57.634 47.619 0.00 0.00 0.00 3.34
504 535 2.919602 ACCATCCTGTGATTTGGGTACT 59.080 45.455 0.00 0.00 0.00 2.73
505 536 3.054361 ACCATCCTGTGATTTGGGTACTC 60.054 47.826 0.00 0.00 0.00 2.59
506 537 3.545703 CATCCTGTGATTTGGGTACTCC 58.454 50.000 0.00 0.00 0.00 3.85
507 538 2.915869 TCCTGTGATTTGGGTACTCCT 58.084 47.619 0.00 0.00 36.20 3.69
508 539 2.838202 TCCTGTGATTTGGGTACTCCTC 59.162 50.000 0.00 0.00 36.20 3.71
509 540 2.571653 CCTGTGATTTGGGTACTCCTCA 59.428 50.000 0.00 0.00 36.20 3.86
510 541 3.200825 CCTGTGATTTGGGTACTCCTCAT 59.799 47.826 0.00 0.00 36.20 2.90
511 542 4.446371 CTGTGATTTGGGTACTCCTCATC 58.554 47.826 0.00 0.00 36.20 2.92
512 543 3.843619 TGTGATTTGGGTACTCCTCATCA 59.156 43.478 0.00 1.46 34.42 3.07
513 544 4.080919 TGTGATTTGGGTACTCCTCATCAG 60.081 45.833 11.70 0.00 36.21 2.90
514 545 3.455910 TGATTTGGGTACTCCTCATCAGG 59.544 47.826 0.00 0.00 42.01 3.86
515 546 1.879575 TTGGGTACTCCTCATCAGGG 58.120 55.000 0.00 0.00 40.80 4.45
516 547 0.691078 TGGGTACTCCTCATCAGGGC 60.691 60.000 0.00 0.00 40.80 5.19
517 548 0.399233 GGGTACTCCTCATCAGGGCT 60.399 60.000 0.00 0.00 40.80 5.19
518 549 1.133136 GGGTACTCCTCATCAGGGCTA 60.133 57.143 0.00 0.00 40.80 3.93
519 550 2.493687 GGGTACTCCTCATCAGGGCTAT 60.494 54.545 0.00 0.00 40.80 2.97
520 551 2.564947 GGTACTCCTCATCAGGGCTATG 59.435 54.545 0.00 0.00 40.80 2.23
521 552 1.055040 ACTCCTCATCAGGGCTATGC 58.945 55.000 0.00 0.00 40.80 3.14
539 570 7.113704 GCTATGCCATTTTTGATAAATCTGC 57.886 36.000 0.00 0.00 0.00 4.26
540 571 6.702723 GCTATGCCATTTTTGATAAATCTGCA 59.297 34.615 5.16 5.16 32.51 4.41
541 572 7.386848 GCTATGCCATTTTTGATAAATCTGCAT 59.613 33.333 14.53 14.53 38.08 3.96
542 573 6.912203 TGCCATTTTTGATAAATCTGCATG 57.088 33.333 0.00 0.00 0.00 4.06
543 574 6.408035 TGCCATTTTTGATAAATCTGCATGT 58.592 32.000 0.00 0.00 0.00 3.21
544 575 7.554211 TGCCATTTTTGATAAATCTGCATGTA 58.446 30.769 0.00 0.00 0.00 2.29
545 576 8.205512 TGCCATTTTTGATAAATCTGCATGTAT 58.794 29.630 0.00 0.00 0.00 2.29
546 577 8.706035 GCCATTTTTGATAAATCTGCATGTATC 58.294 33.333 0.00 0.00 31.72 2.24
547 578 9.199982 CCATTTTTGATAAATCTGCATGTATCC 57.800 33.333 0.00 0.00 30.41 2.59
548 579 8.908678 CATTTTTGATAAATCTGCATGTATCCG 58.091 33.333 0.00 0.00 30.41 4.18
549 580 7.800155 TTTTGATAAATCTGCATGTATCCGA 57.200 32.000 0.00 0.00 30.41 4.55
550 581 7.425577 TTTGATAAATCTGCATGTATCCGAG 57.574 36.000 0.00 0.00 30.41 4.63
551 582 5.482006 TGATAAATCTGCATGTATCCGAGG 58.518 41.667 0.00 0.00 30.41 4.63
552 583 2.847327 AATCTGCATGTATCCGAGGG 57.153 50.000 0.00 0.00 0.00 4.30
553 584 1.722034 ATCTGCATGTATCCGAGGGT 58.278 50.000 0.00 0.00 0.00 4.34
554 585 1.496060 TCTGCATGTATCCGAGGGTT 58.504 50.000 0.00 0.00 0.00 4.11
555 586 2.673258 TCTGCATGTATCCGAGGGTTA 58.327 47.619 0.00 0.00 0.00 2.85
556 587 3.239449 TCTGCATGTATCCGAGGGTTAT 58.761 45.455 0.00 0.00 0.00 1.89
557 588 3.258372 TCTGCATGTATCCGAGGGTTATC 59.742 47.826 0.00 0.00 0.00 1.75
558 589 2.301870 TGCATGTATCCGAGGGTTATCC 59.698 50.000 0.00 0.00 0.00 2.59
559 590 2.301870 GCATGTATCCGAGGGTTATCCA 59.698 50.000 0.00 0.00 38.24 3.41
560 591 3.617531 GCATGTATCCGAGGGTTATCCAG 60.618 52.174 0.00 0.00 38.24 3.86
561 592 1.968493 TGTATCCGAGGGTTATCCAGC 59.032 52.381 0.00 0.00 38.24 4.85
562 593 1.968493 GTATCCGAGGGTTATCCAGCA 59.032 52.381 0.00 0.00 38.24 4.41
563 594 0.759346 ATCCGAGGGTTATCCAGCAC 59.241 55.000 0.00 0.00 38.24 4.40
564 595 1.146263 CCGAGGGTTATCCAGCACC 59.854 63.158 0.00 0.00 38.24 5.01
565 596 1.338136 CCGAGGGTTATCCAGCACCT 61.338 60.000 0.00 0.00 38.24 4.00
566 597 0.541863 CGAGGGTTATCCAGCACCTT 59.458 55.000 0.00 0.00 38.24 3.50
567 598 1.065418 CGAGGGTTATCCAGCACCTTT 60.065 52.381 0.00 0.00 38.24 3.11
568 599 2.644676 GAGGGTTATCCAGCACCTTTC 58.355 52.381 0.00 0.00 38.24 2.62
569 600 2.239907 GAGGGTTATCCAGCACCTTTCT 59.760 50.000 0.00 0.00 38.24 2.52
570 601 2.239907 AGGGTTATCCAGCACCTTTCTC 59.760 50.000 0.00 0.00 38.24 2.87
571 602 2.026262 GGGTTATCCAGCACCTTTCTCA 60.026 50.000 0.00 0.00 33.09 3.27
574 605 4.081087 GGTTATCCAGCACCTTTCTCAGTA 60.081 45.833 0.00 0.00 0.00 2.74
580 611 5.006386 CCAGCACCTTTCTCAGTAATTTCT 58.994 41.667 0.00 0.00 0.00 2.52
588 619 6.128526 CCTTTCTCAGTAATTTCTTGTCGGTC 60.129 42.308 0.00 0.00 0.00 4.79
605 636 3.758993 TCCATTGAGGATCCCCTGT 57.241 52.632 8.55 0.00 44.53 4.00
606 637 1.216064 TCCATTGAGGATCCCCTGTG 58.784 55.000 8.55 2.96 44.53 3.66
607 638 1.216064 CCATTGAGGATCCCCTGTGA 58.784 55.000 8.55 0.00 44.53 3.58
608 639 1.142465 CCATTGAGGATCCCCTGTGAG 59.858 57.143 8.55 0.00 44.53 3.51
610 641 1.274703 TTGAGGATCCCCTGTGAGGC 61.275 60.000 8.55 0.00 44.53 4.70
611 642 1.383803 GAGGATCCCCTGTGAGGCT 60.384 63.158 8.55 0.00 44.53 4.58
612 643 1.692042 AGGATCCCCTGTGAGGCTG 60.692 63.158 8.55 0.00 42.42 4.85
613 644 1.997874 GGATCCCCTGTGAGGCTGT 60.998 63.158 0.00 0.00 32.73 4.40
614 645 1.222936 GATCCCCTGTGAGGCTGTG 59.777 63.158 0.00 0.00 32.73 3.66
615 646 1.229625 ATCCCCTGTGAGGCTGTGA 60.230 57.895 0.00 0.00 32.73 3.58
616 647 1.270414 ATCCCCTGTGAGGCTGTGAG 61.270 60.000 0.00 0.00 32.73 3.51
655 686 1.915141 AGTGCAGCCAAAGTATGCTT 58.085 45.000 0.00 0.00 40.62 3.91
657 688 2.229784 AGTGCAGCCAAAGTATGCTTTC 59.770 45.455 5.74 0.00 42.54 2.62
685 734 9.965824 AGTATTTTCATTTCAAATTCGTCAACT 57.034 25.926 0.00 0.00 0.00 3.16
694 743 1.523758 ATTCGTCAACTTGGCCTGAC 58.476 50.000 11.84 11.84 38.87 3.51
697 746 0.951040 CGTCAACTTGGCCTGACCTC 60.951 60.000 15.19 0.00 39.02 3.85
703 752 1.303561 TTGGCCTGACCTCATGTGC 60.304 57.895 3.32 0.00 40.22 4.57
708 761 0.322277 CCTGACCTCATGTGCTGCTT 60.322 55.000 0.00 0.00 0.00 3.91
718 771 2.040544 GTGCTGCTTACGCCATGGT 61.041 57.895 14.67 0.00 34.43 3.55
719 772 1.745115 TGCTGCTTACGCCATGGTC 60.745 57.895 14.67 4.79 34.43 4.02
722 775 0.108186 CTGCTTACGCCATGGTCTCA 60.108 55.000 14.67 2.68 34.43 3.27
725 778 1.645034 CTTACGCCATGGTCTCAGTG 58.355 55.000 14.67 0.00 0.00 3.66
726 779 0.391130 TTACGCCATGGTCTCAGTGC 60.391 55.000 14.67 0.00 0.00 4.40
728 781 2.104859 CGCCATGGTCTCAGTGCTG 61.105 63.158 14.67 0.00 0.00 4.41
729 782 1.297689 GCCATGGTCTCAGTGCTGA 59.702 57.895 14.67 1.69 38.06 4.26
732 785 2.014857 CCATGGTCTCAGTGCTGATTG 58.985 52.381 2.57 0.00 39.13 2.67
733 786 2.355412 CCATGGTCTCAGTGCTGATTGA 60.355 50.000 2.57 0.00 39.13 2.57
734 787 3.542648 CATGGTCTCAGTGCTGATTGAT 58.457 45.455 2.06 0.00 39.13 2.57
735 788 3.257469 TGGTCTCAGTGCTGATTGATC 57.743 47.619 2.06 0.00 39.13 2.92
736 789 2.200067 GGTCTCAGTGCTGATTGATCG 58.800 52.381 2.06 0.00 39.13 3.69
737 790 2.417924 GGTCTCAGTGCTGATTGATCGT 60.418 50.000 2.06 0.00 39.13 3.73
738 791 3.257393 GTCTCAGTGCTGATTGATCGTT 58.743 45.455 2.06 0.00 39.13 3.85
739 792 4.424626 GTCTCAGTGCTGATTGATCGTTA 58.575 43.478 2.06 0.00 39.13 3.18
740 793 4.502282 GTCTCAGTGCTGATTGATCGTTAG 59.498 45.833 2.06 0.00 39.13 2.34
741 794 3.785486 TCAGTGCTGATTGATCGTTAGG 58.215 45.455 0.00 0.00 34.14 2.69
742 795 3.195610 TCAGTGCTGATTGATCGTTAGGT 59.804 43.478 0.00 0.00 34.14 3.08
743 796 4.401202 TCAGTGCTGATTGATCGTTAGGTA 59.599 41.667 0.00 0.00 34.14 3.08
744 797 4.742167 CAGTGCTGATTGATCGTTAGGTAG 59.258 45.833 0.00 0.00 0.00 3.18
773 826 3.680937 TGTGAAATCCTAGTTTTACGCCG 59.319 43.478 0.00 0.00 32.18 6.46
808 862 3.037549 ACCACCAACCATCACATGTTTT 58.962 40.909 0.00 0.00 0.00 2.43
809 863 3.069443 ACCACCAACCATCACATGTTTTC 59.931 43.478 0.00 0.00 0.00 2.29
811 865 4.202243 CCACCAACCATCACATGTTTTCTT 60.202 41.667 0.00 0.00 0.00 2.52
815 869 8.303156 CACCAACCATCACATGTTTTCTTATTA 58.697 33.333 0.00 0.00 0.00 0.98
816 870 9.034800 ACCAACCATCACATGTTTTCTTATTAT 57.965 29.630 0.00 0.00 0.00 1.28
850 907 2.426522 TGCCTGCAAACTGTAGCTTAG 58.573 47.619 0.00 0.00 0.00 2.18
856 913 2.355209 GCAAACTGTAGCTTAGCCCTCT 60.355 50.000 0.00 0.00 0.00 3.69
857 914 3.870299 GCAAACTGTAGCTTAGCCCTCTT 60.870 47.826 0.00 0.00 0.00 2.85
872 929 1.625818 CCTCTTTGGTGCTGGAGTAGT 59.374 52.381 0.00 0.00 0.00 2.73
873 930 2.832129 CCTCTTTGGTGCTGGAGTAGTA 59.168 50.000 0.00 0.00 0.00 1.82
875 932 4.080863 CCTCTTTGGTGCTGGAGTAGTAAT 60.081 45.833 0.00 0.00 0.00 1.89
876 933 5.128827 CCTCTTTGGTGCTGGAGTAGTAATA 59.871 44.000 0.00 0.00 0.00 0.98
877 934 6.351881 CCTCTTTGGTGCTGGAGTAGTAATAA 60.352 42.308 0.00 0.00 0.00 1.40
878 935 7.195374 TCTTTGGTGCTGGAGTAGTAATAAT 57.805 36.000 0.00 0.00 0.00 1.28
879 936 7.047891 TCTTTGGTGCTGGAGTAGTAATAATG 58.952 38.462 0.00 0.00 0.00 1.90
880 937 5.950544 TGGTGCTGGAGTAGTAATAATGT 57.049 39.130 0.00 0.00 0.00 2.71
881 938 5.670485 TGGTGCTGGAGTAGTAATAATGTG 58.330 41.667 0.00 0.00 0.00 3.21
882 939 5.188948 TGGTGCTGGAGTAGTAATAATGTGT 59.811 40.000 0.00 0.00 0.00 3.72
919 976 3.471680 AGTGTCTTTCCAAGCTCTTGTC 58.528 45.455 8.60 0.00 38.85 3.18
925 982 6.772716 TGTCTTTCCAAGCTCTTGTCTATTTT 59.227 34.615 8.60 0.00 38.85 1.82
927 984 8.951243 GTCTTTCCAAGCTCTTGTCTATTTTAT 58.049 33.333 8.60 0.00 38.85 1.40
928 985 9.520515 TCTTTCCAAGCTCTTGTCTATTTTATT 57.479 29.630 8.60 0.00 38.85 1.40
941 1015 8.621532 TGTCTATTTTATTTTCAGTGTCAGCT 57.378 30.769 0.00 0.00 0.00 4.24
943 1017 9.899226 GTCTATTTTATTTTCAGTGTCAGCTTT 57.101 29.630 0.00 0.00 0.00 3.51
975 1049 8.706492 TTTCTGTCTTTCTTTCGTAACACTTA 57.294 30.769 0.00 0.00 0.00 2.24
981 1055 5.646467 TTCTTTCGTAACACTTAGCACAC 57.354 39.130 0.00 0.00 0.00 3.82
995 1069 0.250295 GCACACCTGTAGCTGTTCCA 60.250 55.000 0.00 0.00 0.00 3.53
997 1071 2.350522 CACACCTGTAGCTGTTCCATC 58.649 52.381 0.00 0.00 0.00 3.51
1014 1090 8.885494 TGTTCCATCAAAAATAAAAGTTCCAG 57.115 30.769 0.00 0.00 0.00 3.86
1055 1131 7.573710 TCTGTATTAGGGTGACAATATTGCTT 58.426 34.615 15.48 0.00 0.00 3.91
1057 1133 7.116075 TGTATTAGGGTGACAATATTGCTTGT 58.884 34.615 15.48 0.00 41.92 3.16
1138 1214 1.142688 AGGACATCCAGCCCCTTGTT 61.143 55.000 0.00 0.00 38.89 2.83
1197 1273 7.125792 ACTCTCCCCTAAACTGTTACATATG 57.874 40.000 0.00 0.00 0.00 1.78
1198 1274 6.672657 ACTCTCCCCTAAACTGTTACATATGT 59.327 38.462 13.93 13.93 0.00 2.29
1199 1275 6.884832 TCTCCCCTAAACTGTTACATATGTG 58.115 40.000 18.81 4.00 0.00 3.21
1201 1277 7.347222 TCTCCCCTAAACTGTTACATATGTGAT 59.653 37.037 18.81 0.00 0.00 3.06
1202 1278 8.555896 TCCCCTAAACTGTTACATATGTGATA 57.444 34.615 18.81 7.74 0.00 2.15
1204 1280 9.219603 CCCCTAAACTGTTACATATGTGATATG 57.780 37.037 18.81 7.17 46.26 1.78
1215 1291 6.905544 CATATGTGATATGTCATCTCCTGC 57.094 41.667 0.00 0.00 38.21 4.85
1218 1294 4.891260 TGTGATATGTCATCTCCTGCATC 58.109 43.478 0.00 0.00 36.60 3.91
1220 1296 5.071384 TGTGATATGTCATCTCCTGCATCTT 59.929 40.000 0.00 0.00 36.60 2.40
1221 1297 5.996513 GTGATATGTCATCTCCTGCATCTTT 59.003 40.000 0.00 0.00 36.60 2.52
1690 1777 4.820894 ACTACTGGTATGGACTGTTTCC 57.179 45.455 0.00 0.00 46.13 3.13
1718 1824 6.816134 TTTATAGTTCAGTGATGCTTTGCA 57.184 33.333 0.00 0.00 44.86 4.08
1728 1835 5.118050 CAGTGATGCTTTGCACAGTAATTTG 59.882 40.000 1.15 0.00 43.04 2.32
1759 1866 4.963276 TTCTGTTACATTATGCTGCACC 57.037 40.909 3.57 0.00 0.00 5.01
1779 1887 8.537728 TGCACCCTTCTGATTAATTGAATTAT 57.462 30.769 0.00 0.00 0.00 1.28
1858 1969 8.681486 TTGATATACTGCAGTATTGATTGCTT 57.319 30.769 37.12 18.05 41.18 3.91
1874 1985 7.928307 TGATTGCTTCTTATTTCTTACTGCT 57.072 32.000 0.00 0.00 0.00 4.24
1902 2013 4.996122 TGCATTAGGGAAAACAATTGCAAG 59.004 37.500 4.94 0.00 0.00 4.01
1905 2016 6.311200 GCATTAGGGAAAACAATTGCAAGTAG 59.689 38.462 4.94 0.00 0.00 2.57
2507 2618 3.015327 GAGCAGCATGAAGATCAAGGTT 58.985 45.455 0.00 0.00 39.69 3.50
2513 2624 1.808411 TGAAGATCAAGGTTGTCGCC 58.192 50.000 0.00 0.00 0.00 5.54
2589 2700 1.944709 GCACTTTCCAACAGGTACGTT 59.055 47.619 0.00 0.00 0.00 3.99
2624 2737 5.844516 CCCTACCTTCTATAACCCATCTGAA 59.155 44.000 0.00 0.00 0.00 3.02
2628 2745 4.503296 CCTTCTATAACCCATCTGAACCGG 60.503 50.000 0.00 0.00 0.00 5.28
2744 2861 1.480137 AGGAAGTGCTTCTGATCTCCG 59.520 52.381 11.18 0.00 39.45 4.63
2745 2862 1.472376 GGAAGTGCTTCTGATCTCCGG 60.472 57.143 11.18 0.00 39.45 5.14
2748 2865 0.103937 GTGCTTCTGATCTCCGGGAG 59.896 60.000 18.25 18.25 0.00 4.30
2749 2866 1.068921 GCTTCTGATCTCCGGGAGC 59.931 63.158 19.48 6.94 45.00 4.70
2750 2867 2.509512 CTTCTGATCTCCGGGAGCA 58.490 57.895 19.48 11.28 38.09 4.26
2928 3053 9.314321 GCAAGTACACTATATCTATGTTTGTGT 57.686 33.333 0.00 0.00 39.86 3.72
3144 3271 6.877236 ACCATTTTCCATGTGATTATCAACC 58.123 36.000 0.00 0.00 0.00 3.77
3221 3410 1.378250 AGGTTCAGCTGCCTGATGC 60.378 57.895 9.47 0.00 46.84 3.91
3224 3413 1.476471 GGTTCAGCTGCCTGATGCTAT 60.476 52.381 9.47 0.00 46.84 2.97
3259 3448 8.325787 TGAAAAGCAAATATTACTCCCTCTGTA 58.674 33.333 0.00 0.00 0.00 2.74
3273 3462 8.709272 ACTCCCTCTGTACCTAAATATAAGTC 57.291 38.462 0.00 0.00 0.00 3.01
3352 3546 5.755375 AGTCTACATTCATTTGCTCCGTATG 59.245 40.000 0.00 0.00 0.00 2.39
3358 3552 6.374333 ACATTCATTTGCTCCGTATGTAGTTT 59.626 34.615 0.00 0.00 0.00 2.66
3362 3556 9.772973 TTCATTTGCTCCGTATGTAGTTTATAT 57.227 29.630 0.00 0.00 0.00 0.86
3488 3683 5.633182 ACATGTTATGGACGAAAAACATTGC 59.367 36.000 0.00 0.00 39.80 3.56
3518 3761 4.726583 AGGAACATCATGCATTAGCTGAT 58.273 39.130 0.00 0.00 42.74 2.90
3610 3856 0.036388 AACCCTCCACTATGTGTGCG 60.036 55.000 0.00 0.00 44.92 5.34
3611 3857 1.192146 ACCCTCCACTATGTGTGCGT 61.192 55.000 0.00 0.00 44.92 5.24
3612 3858 0.036388 CCCTCCACTATGTGTGCGTT 60.036 55.000 0.00 0.00 44.92 4.84
3614 3860 2.354303 CCCTCCACTATGTGTGCGTTTA 60.354 50.000 0.00 0.00 44.92 2.01
3617 3863 4.433615 CTCCACTATGTGTGCGTTTATCT 58.566 43.478 0.00 0.00 44.92 1.98
3618 3864 4.430007 TCCACTATGTGTGCGTTTATCTC 58.570 43.478 0.00 0.00 44.92 2.75
3620 3866 4.811024 CCACTATGTGTGCGTTTATCTCAT 59.189 41.667 0.00 0.00 44.92 2.90
3621 3867 5.294306 CCACTATGTGTGCGTTTATCTCATT 59.706 40.000 0.00 0.00 44.92 2.57
3622 3868 6.183360 CCACTATGTGTGCGTTTATCTCATTT 60.183 38.462 0.00 0.00 44.92 2.32
3623 3869 6.901887 CACTATGTGTGCGTTTATCTCATTTC 59.098 38.462 0.00 0.00 40.06 2.17
3624 3870 4.678509 TGTGTGCGTTTATCTCATTTCC 57.321 40.909 0.00 0.00 0.00 3.13
3652 3933 1.487976 CTGCTAGGGGCTCATCTTCAA 59.512 52.381 0.00 0.00 42.39 2.69
3687 3968 4.072131 TCTGAGCACCAAATACTTGTTCC 58.928 43.478 0.00 0.00 0.00 3.62
3876 4158 3.367087 CCTCTGCTTCAGCCTGAAAAATG 60.367 47.826 8.74 0.00 35.73 2.32
3886 4168 4.333372 CAGCCTGAAAAATGCACACTTTTT 59.667 37.500 8.58 8.58 38.23 1.94
3950 4232 3.730761 CAGTGCGCCAGAGGTTGC 61.731 66.667 4.18 0.00 0.00 4.17
3951 4233 4.254709 AGTGCGCCAGAGGTTGCA 62.255 61.111 4.18 1.83 34.81 4.08
3952 4234 3.286751 GTGCGCCAGAGGTTGCAA 61.287 61.111 4.18 0.00 37.77 4.08
3953 4235 2.518112 TGCGCCAGAGGTTGCAAA 60.518 55.556 4.18 0.00 34.42 3.68
3954 4236 2.256461 GCGCCAGAGGTTGCAAAG 59.744 61.111 0.00 0.00 0.00 2.77
3962 4248 1.683385 AGAGGTTGCAAAGAAAGCCAC 59.317 47.619 0.00 0.00 0.00 5.01
4012 4298 2.753029 GGGTGCCACTTGAGAGCT 59.247 61.111 0.00 0.00 0.00 4.09
4041 4329 3.420576 CGAAAACTGCAAACATAACACCG 59.579 43.478 0.00 0.00 0.00 4.94
4052 4340 6.142320 GCAAACATAACACCGAGAAAGAAAAG 59.858 38.462 0.00 0.00 0.00 2.27
4053 4341 7.414436 CAAACATAACACCGAGAAAGAAAAGA 58.586 34.615 0.00 0.00 0.00 2.52
4072 4360 2.103263 AGACAATCAGGAGCCCGATTAC 59.897 50.000 0.00 0.00 30.32 1.89
4080 4368 2.104963 AGGAGCCCGATTACCAGAATTC 59.895 50.000 0.00 0.00 0.00 2.17
4081 4369 2.104963 GGAGCCCGATTACCAGAATTCT 59.895 50.000 0.88 0.88 0.00 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.583986 GGAGATGCGATCGGAGGAG 59.416 63.158 18.30 0.00 0.00 3.69
1 2 1.903890 GGGAGATGCGATCGGAGGA 60.904 63.158 18.30 0.00 0.00 3.71
2 3 2.653702 GGGAGATGCGATCGGAGG 59.346 66.667 18.30 0.00 0.00 4.30
3 4 1.872197 GAGGGGAGATGCGATCGGAG 61.872 65.000 18.30 0.00 0.00 4.63
4 5 1.903890 GAGGGGAGATGCGATCGGA 60.904 63.158 18.30 15.79 0.00 4.55
5 6 2.653702 GAGGGGAGATGCGATCGG 59.346 66.667 18.30 0.00 0.00 4.18
6 7 1.872197 GAGGAGGGGAGATGCGATCG 61.872 65.000 11.69 11.69 0.00 3.69
7 8 1.540435 GGAGGAGGGGAGATGCGATC 61.540 65.000 0.00 0.00 0.00 3.69
8 9 1.535202 GGAGGAGGGGAGATGCGAT 60.535 63.158 0.00 0.00 0.00 4.58
9 10 2.123251 GGAGGAGGGGAGATGCGA 60.123 66.667 0.00 0.00 0.00 5.10
10 11 3.237741 GGGAGGAGGGGAGATGCG 61.238 72.222 0.00 0.00 0.00 4.73
11 12 3.237741 CGGGAGGAGGGGAGATGC 61.238 72.222 0.00 0.00 0.00 3.91
12 13 1.834822 GACGGGAGGAGGGGAGATG 60.835 68.421 0.00 0.00 0.00 2.90
13 14 2.609920 GACGGGAGGAGGGGAGAT 59.390 66.667 0.00 0.00 0.00 2.75
14 15 4.124943 CGACGGGAGGAGGGGAGA 62.125 72.222 0.00 0.00 0.00 3.71
76 81 0.454196 GAGAGCGAGAGAGGTTGGTC 59.546 60.000 0.00 0.00 0.00 4.02
97 102 2.664835 ATACCGGCAGAGAGGGGGAG 62.665 65.000 0.00 0.00 0.00 4.30
98 103 2.658321 GATACCGGCAGAGAGGGGGA 62.658 65.000 0.00 0.00 0.00 4.81
99 104 2.122813 ATACCGGCAGAGAGGGGG 60.123 66.667 0.00 0.00 0.00 5.40
100 105 1.152440 AGATACCGGCAGAGAGGGG 60.152 63.158 0.00 0.00 0.00 4.79
101 106 0.178975 AGAGATACCGGCAGAGAGGG 60.179 60.000 0.00 0.00 0.00 4.30
102 107 1.202879 AGAGAGATACCGGCAGAGAGG 60.203 57.143 0.00 0.00 0.00 3.69
103 108 2.151202 GAGAGAGATACCGGCAGAGAG 58.849 57.143 0.00 0.00 0.00 3.20
104 109 1.771854 AGAGAGAGATACCGGCAGAGA 59.228 52.381 0.00 0.00 0.00 3.10
105 110 2.270352 AGAGAGAGATACCGGCAGAG 57.730 55.000 0.00 0.00 0.00 3.35
106 111 2.302260 CAAGAGAGAGATACCGGCAGA 58.698 52.381 0.00 0.00 0.00 4.26
107 112 1.339610 CCAAGAGAGAGATACCGGCAG 59.660 57.143 0.00 0.00 0.00 4.85
108 113 1.342076 ACCAAGAGAGAGATACCGGCA 60.342 52.381 0.00 0.00 0.00 5.69
109 114 1.404843 ACCAAGAGAGAGATACCGGC 58.595 55.000 0.00 0.00 0.00 6.13
110 115 2.554893 GCTACCAAGAGAGAGATACCGG 59.445 54.545 0.00 0.00 0.00 5.28
111 116 3.215151 TGCTACCAAGAGAGAGATACCG 58.785 50.000 0.00 0.00 0.00 4.02
112 117 3.005367 GCTGCTACCAAGAGAGAGATACC 59.995 52.174 0.00 0.00 0.00 2.73
113 118 3.005367 GGCTGCTACCAAGAGAGAGATAC 59.995 52.174 0.00 0.00 0.00 2.24
114 119 3.117322 AGGCTGCTACCAAGAGAGAGATA 60.117 47.826 0.00 0.00 0.00 1.98
115 120 2.038659 GGCTGCTACCAAGAGAGAGAT 58.961 52.381 0.00 0.00 0.00 2.75
119 124 2.011046 GCAAGGCTGCTACCAAGAGAG 61.011 57.143 0.00 0.00 45.74 3.20
131 136 2.328819 AGCAAGATCTAGCAAGGCTG 57.671 50.000 0.00 0.00 40.10 4.85
132 137 3.015327 CAAAGCAAGATCTAGCAAGGCT 58.985 45.455 0.00 0.00 43.41 4.58
133 138 2.479219 GCAAAGCAAGATCTAGCAAGGC 60.479 50.000 0.00 0.00 0.00 4.35
227 232 1.070289 GACAGTGAAGTCCCCGAGTTT 59.930 52.381 0.00 0.00 32.36 2.66
236 241 2.473235 GACGCAAGAAGACAGTGAAGTC 59.527 50.000 0.00 0.00 43.62 3.01
237 242 2.474816 GACGCAAGAAGACAGTGAAGT 58.525 47.619 0.00 0.00 43.62 3.01
244 249 0.599204 GAACCGGACGCAAGAAGACA 60.599 55.000 9.46 0.00 43.62 3.41
254 259 1.443872 CGGAGACAAGAACCGGACG 60.444 63.158 9.46 0.00 42.48 4.79
259 264 1.300697 ACGCACGGAGACAAGAACC 60.301 57.895 0.00 0.00 0.00 3.62
261 266 1.954146 GCACGCACGGAGACAAGAA 60.954 57.895 0.00 0.00 0.00 2.52
262 267 2.355837 GCACGCACGGAGACAAGA 60.356 61.111 0.00 0.00 0.00 3.02
263 268 3.767230 CGCACGCACGGAGACAAG 61.767 66.667 0.00 0.00 0.00 3.16
284 289 2.740714 GATCGCAGCGTCCACCAAC 61.741 63.158 15.93 0.00 0.00 3.77
285 290 2.434185 GATCGCAGCGTCCACCAA 60.434 61.111 15.93 0.00 0.00 3.67
286 291 4.451150 GGATCGCAGCGTCCACCA 62.451 66.667 23.50 3.14 34.57 4.17
318 323 3.435186 GTCAAGAAGCGGCAGCCC 61.435 66.667 5.63 0.00 46.67 5.19
319 324 2.359230 AGTCAAGAAGCGGCAGCC 60.359 61.111 4.82 0.00 46.67 4.85
380 392 1.082756 CAGCAAGGAACGAACGCAC 60.083 57.895 0.00 0.00 0.00 5.34
383 395 1.493311 GAGCAGCAAGGAACGAACG 59.507 57.895 0.00 0.00 0.00 3.95
385 397 1.667830 CGGAGCAGCAAGGAACGAA 60.668 57.895 0.00 0.00 0.00 3.85
386 398 2.048222 CGGAGCAGCAAGGAACGA 60.048 61.111 0.00 0.00 0.00 3.85
425 440 3.083600 GAATGGACGAGCAACCGCG 62.084 63.158 0.00 0.00 45.49 6.46
428 443 1.749258 GGGGAATGGACGAGCAACC 60.749 63.158 0.00 0.00 0.00 3.77
429 444 1.026718 CAGGGGAATGGACGAGCAAC 61.027 60.000 0.00 0.00 0.00 4.17
431 446 1.488705 AACAGGGGAATGGACGAGCA 61.489 55.000 0.00 0.00 0.00 4.26
434 465 0.768622 ACAAACAGGGGAATGGACGA 59.231 50.000 0.00 0.00 0.00 4.20
449 480 2.281208 CGGGAGCAACGGGACAAA 60.281 61.111 0.00 0.00 0.00 2.83
451 482 4.308458 CACGGGAGCAACGGGACA 62.308 66.667 0.00 0.00 36.74 4.02
461 492 4.477975 GACGAGCGACCACGGGAG 62.478 72.222 0.00 0.00 40.15 4.30
465 496 2.816360 TATCCGACGAGCGACCACG 61.816 63.158 0.00 0.00 44.57 4.94
466 497 1.298190 GTATCCGACGAGCGACCAC 60.298 63.158 0.00 0.00 44.57 4.16
469 500 0.385723 GATGGTATCCGACGAGCGAC 60.386 60.000 0.00 0.00 44.57 5.19
470 501 1.512996 GGATGGTATCCGACGAGCGA 61.513 60.000 0.00 0.00 44.57 4.93
472 503 4.968197 GGATGGTATCCGACGAGC 57.032 61.111 0.00 0.00 40.13 5.03
480 511 4.170468 ACCCAAATCACAGGATGGTATC 57.830 45.455 0.00 0.00 43.62 2.24
482 513 4.108570 AGTACCCAAATCACAGGATGGTA 58.891 43.478 0.00 0.00 43.62 3.25
483 514 2.919602 AGTACCCAAATCACAGGATGGT 59.080 45.455 0.00 0.00 43.62 3.55
484 515 3.545703 GAGTACCCAAATCACAGGATGG 58.454 50.000 0.00 0.00 43.62 3.51
486 517 3.456277 GAGGAGTACCCAAATCACAGGAT 59.544 47.826 3.60 0.00 37.41 3.24
488 519 2.571653 TGAGGAGTACCCAAATCACAGG 59.428 50.000 3.60 0.00 37.41 4.00
489 520 3.981071 TGAGGAGTACCCAAATCACAG 57.019 47.619 3.60 0.00 37.41 3.66
490 521 3.843619 TGATGAGGAGTACCCAAATCACA 59.156 43.478 10.96 0.00 35.42 3.58
491 522 4.446371 CTGATGAGGAGTACCCAAATCAC 58.554 47.826 10.96 0.00 35.42 3.06
492 523 3.455910 CCTGATGAGGAGTACCCAAATCA 59.544 47.826 0.00 12.88 42.93 2.57
493 524 3.181450 CCCTGATGAGGAGTACCCAAATC 60.181 52.174 0.00 6.01 42.93 2.17
494 525 2.780010 CCCTGATGAGGAGTACCCAAAT 59.220 50.000 0.00 0.00 42.93 2.32
495 526 2.196595 CCCTGATGAGGAGTACCCAAA 58.803 52.381 0.00 0.00 42.93 3.28
496 527 1.879575 CCCTGATGAGGAGTACCCAA 58.120 55.000 0.00 0.00 42.93 4.12
497 528 0.691078 GCCCTGATGAGGAGTACCCA 60.691 60.000 0.00 0.00 42.93 4.51
498 529 0.399233 AGCCCTGATGAGGAGTACCC 60.399 60.000 0.00 0.00 42.93 3.69
499 530 2.383442 TAGCCCTGATGAGGAGTACC 57.617 55.000 0.00 0.00 42.93 3.34
500 531 2.028567 GCATAGCCCTGATGAGGAGTAC 60.029 54.545 0.00 0.00 42.93 2.73
501 532 2.251818 GCATAGCCCTGATGAGGAGTA 58.748 52.381 0.00 0.00 42.93 2.59
502 533 1.055040 GCATAGCCCTGATGAGGAGT 58.945 55.000 0.00 0.00 42.93 3.85
503 534 0.324285 GGCATAGCCCTGATGAGGAG 59.676 60.000 0.00 0.00 44.06 3.69
504 535 2.456627 GGCATAGCCCTGATGAGGA 58.543 57.895 0.00 0.00 44.06 3.71
515 546 6.702723 TGCAGATTTATCAAAAATGGCATAGC 59.297 34.615 0.00 0.00 0.00 2.97
516 547 8.708742 CATGCAGATTTATCAAAAATGGCATAG 58.291 33.333 0.00 0.00 36.82 2.23
517 548 8.205512 ACATGCAGATTTATCAAAAATGGCATA 58.794 29.630 0.00 0.00 36.82 3.14
518 549 7.051623 ACATGCAGATTTATCAAAAATGGCAT 58.948 30.769 0.00 0.00 38.16 4.40
519 550 6.408035 ACATGCAGATTTATCAAAAATGGCA 58.592 32.000 0.00 0.00 34.44 4.92
520 551 6.913873 ACATGCAGATTTATCAAAAATGGC 57.086 33.333 0.00 0.00 0.00 4.40
521 552 9.199982 GGATACATGCAGATTTATCAAAAATGG 57.800 33.333 0.00 0.00 0.00 3.16
522 553 8.908678 CGGATACATGCAGATTTATCAAAAATG 58.091 33.333 0.00 0.00 0.00 2.32
523 554 8.849168 TCGGATACATGCAGATTTATCAAAAAT 58.151 29.630 0.00 0.00 0.00 1.82
524 555 8.219546 TCGGATACATGCAGATTTATCAAAAA 57.780 30.769 0.00 0.00 0.00 1.94
525 556 7.041167 CCTCGGATACATGCAGATTTATCAAAA 60.041 37.037 0.00 0.00 0.00 2.44
526 557 6.427853 CCTCGGATACATGCAGATTTATCAAA 59.572 38.462 0.00 0.00 0.00 2.69
527 558 5.934043 CCTCGGATACATGCAGATTTATCAA 59.066 40.000 0.00 0.00 0.00 2.57
528 559 5.482006 CCTCGGATACATGCAGATTTATCA 58.518 41.667 0.00 0.00 0.00 2.15
529 560 4.872691 CCCTCGGATACATGCAGATTTATC 59.127 45.833 0.00 0.00 0.00 1.75
530 561 4.287067 ACCCTCGGATACATGCAGATTTAT 59.713 41.667 0.00 0.00 0.00 1.40
531 562 3.646162 ACCCTCGGATACATGCAGATTTA 59.354 43.478 0.00 0.00 0.00 1.40
532 563 2.439507 ACCCTCGGATACATGCAGATTT 59.560 45.455 0.00 0.00 0.00 2.17
533 564 2.050144 ACCCTCGGATACATGCAGATT 58.950 47.619 0.00 0.00 0.00 2.40
534 565 1.722034 ACCCTCGGATACATGCAGAT 58.278 50.000 0.00 0.00 0.00 2.90
535 566 1.496060 AACCCTCGGATACATGCAGA 58.504 50.000 0.00 0.00 0.00 4.26
536 567 3.589988 GATAACCCTCGGATACATGCAG 58.410 50.000 0.00 0.00 0.00 4.41
537 568 2.301870 GGATAACCCTCGGATACATGCA 59.698 50.000 0.00 0.00 0.00 3.96
538 569 2.301870 TGGATAACCCTCGGATACATGC 59.698 50.000 0.00 0.00 35.38 4.06
539 570 3.617531 GCTGGATAACCCTCGGATACATG 60.618 52.174 0.00 0.00 35.38 3.21
540 571 2.567615 GCTGGATAACCCTCGGATACAT 59.432 50.000 0.00 0.00 35.38 2.29
541 572 1.968493 GCTGGATAACCCTCGGATACA 59.032 52.381 0.00 0.00 35.38 2.29
542 573 1.968493 TGCTGGATAACCCTCGGATAC 59.032 52.381 0.00 0.00 35.38 2.24
543 574 1.968493 GTGCTGGATAACCCTCGGATA 59.032 52.381 0.00 0.00 35.38 2.59
544 575 0.759346 GTGCTGGATAACCCTCGGAT 59.241 55.000 0.00 0.00 35.38 4.18
545 576 1.335132 GGTGCTGGATAACCCTCGGA 61.335 60.000 0.00 0.00 35.38 4.55
546 577 1.146263 GGTGCTGGATAACCCTCGG 59.854 63.158 0.00 0.00 35.38 4.63
547 578 0.541863 AAGGTGCTGGATAACCCTCG 59.458 55.000 0.00 0.00 37.13 4.63
548 579 2.239907 AGAAAGGTGCTGGATAACCCTC 59.760 50.000 0.00 0.00 37.13 4.30
549 580 2.239907 GAGAAAGGTGCTGGATAACCCT 59.760 50.000 0.00 0.00 37.13 4.34
550 581 2.026262 TGAGAAAGGTGCTGGATAACCC 60.026 50.000 0.00 0.00 37.13 4.11
551 582 3.274288 CTGAGAAAGGTGCTGGATAACC 58.726 50.000 0.00 0.00 36.66 2.85
552 583 3.944087 ACTGAGAAAGGTGCTGGATAAC 58.056 45.455 0.00 0.00 0.00 1.89
553 584 5.755409 TTACTGAGAAAGGTGCTGGATAA 57.245 39.130 0.00 0.00 0.00 1.75
554 585 5.957771 ATTACTGAGAAAGGTGCTGGATA 57.042 39.130 0.00 0.00 0.00 2.59
555 586 4.851639 ATTACTGAGAAAGGTGCTGGAT 57.148 40.909 0.00 0.00 0.00 3.41
556 587 4.640771 AATTACTGAGAAAGGTGCTGGA 57.359 40.909 0.00 0.00 0.00 3.86
557 588 5.006386 AGAAATTACTGAGAAAGGTGCTGG 58.994 41.667 0.00 0.00 0.00 4.85
558 589 6.016777 ACAAGAAATTACTGAGAAAGGTGCTG 60.017 38.462 0.00 0.00 0.00 4.41
559 590 6.064717 ACAAGAAATTACTGAGAAAGGTGCT 58.935 36.000 0.00 0.00 0.00 4.40
560 591 6.319141 ACAAGAAATTACTGAGAAAGGTGC 57.681 37.500 0.00 0.00 0.00 5.01
561 592 6.347725 CCGACAAGAAATTACTGAGAAAGGTG 60.348 42.308 0.00 0.00 0.00 4.00
562 593 5.701290 CCGACAAGAAATTACTGAGAAAGGT 59.299 40.000 0.00 0.00 0.00 3.50
563 594 5.701290 ACCGACAAGAAATTACTGAGAAAGG 59.299 40.000 0.00 0.00 0.00 3.11
564 595 6.128526 GGACCGACAAGAAATTACTGAGAAAG 60.129 42.308 0.00 0.00 0.00 2.62
565 596 5.699458 GGACCGACAAGAAATTACTGAGAAA 59.301 40.000 0.00 0.00 0.00 2.52
566 597 5.221561 TGGACCGACAAGAAATTACTGAGAA 60.222 40.000 0.00 0.00 0.00 2.87
567 598 4.282449 TGGACCGACAAGAAATTACTGAGA 59.718 41.667 0.00 0.00 0.00 3.27
568 599 4.566004 TGGACCGACAAGAAATTACTGAG 58.434 43.478 0.00 0.00 0.00 3.35
569 600 4.610605 TGGACCGACAAGAAATTACTGA 57.389 40.909 0.00 0.00 0.00 3.41
570 601 5.411361 TCAATGGACCGACAAGAAATTACTG 59.589 40.000 0.00 0.00 0.00 2.74
571 602 5.556915 TCAATGGACCGACAAGAAATTACT 58.443 37.500 0.00 0.00 0.00 2.24
574 605 3.758554 CCTCAATGGACCGACAAGAAATT 59.241 43.478 0.00 0.00 38.35 1.82
588 619 1.142465 CTCACAGGGGATCCTCAATGG 59.858 57.143 15.83 2.57 42.67 3.16
600 631 0.397941 TTTCTCACAGCCTCACAGGG 59.602 55.000 0.00 0.00 35.37 4.45
602 633 2.291741 GGTTTTTCTCACAGCCTCACAG 59.708 50.000 0.00 0.00 0.00 3.66
604 635 2.291741 CTGGTTTTTCTCACAGCCTCAC 59.708 50.000 0.00 0.00 0.00 3.51
605 636 2.575532 CTGGTTTTTCTCACAGCCTCA 58.424 47.619 0.00 0.00 0.00 3.86
610 641 3.470709 TCTCTGCTGGTTTTTCTCACAG 58.529 45.455 0.00 0.00 0.00 3.66
611 642 3.470709 CTCTCTGCTGGTTTTTCTCACA 58.529 45.455 0.00 0.00 0.00 3.58
612 643 2.810852 CCTCTCTGCTGGTTTTTCTCAC 59.189 50.000 0.00 0.00 0.00 3.51
613 644 2.705658 TCCTCTCTGCTGGTTTTTCTCA 59.294 45.455 0.00 0.00 0.00 3.27
614 645 3.409026 TCCTCTCTGCTGGTTTTTCTC 57.591 47.619 0.00 0.00 0.00 2.87
615 646 3.864789 TTCCTCTCTGCTGGTTTTTCT 57.135 42.857 0.00 0.00 0.00 2.52
616 647 3.885901 ACTTTCCTCTCTGCTGGTTTTTC 59.114 43.478 0.00 0.00 0.00 2.29
684 733 1.310933 GCACATGAGGTCAGGCCAAG 61.311 60.000 5.01 0.00 40.61 3.61
685 734 1.303561 GCACATGAGGTCAGGCCAA 60.304 57.895 5.01 0.00 40.61 4.52
708 761 1.218047 GCACTGAGACCATGGCGTA 59.782 57.895 13.04 0.00 0.00 4.42
718 771 3.599730 AACGATCAATCAGCACTGAGA 57.400 42.857 6.50 0.00 43.61 3.27
719 772 3.801050 CCTAACGATCAATCAGCACTGAG 59.199 47.826 6.50 0.00 43.61 3.35
722 775 3.895232 ACCTAACGATCAATCAGCACT 57.105 42.857 0.00 0.00 0.00 4.40
725 778 3.060602 GGCTACCTAACGATCAATCAGC 58.939 50.000 0.00 0.00 0.00 4.26
726 779 4.592485 AGGCTACCTAACGATCAATCAG 57.408 45.455 0.00 0.00 28.47 2.90
728 781 5.006746 CACAAAGGCTACCTAACGATCAATC 59.993 44.000 0.00 0.00 31.13 2.67
729 782 4.876107 CACAAAGGCTACCTAACGATCAAT 59.124 41.667 0.00 0.00 31.13 2.57
732 785 3.617263 CACACAAAGGCTACCTAACGATC 59.383 47.826 0.00 0.00 31.13 3.69
733 786 3.259876 TCACACAAAGGCTACCTAACGAT 59.740 43.478 0.00 0.00 31.13 3.73
734 787 2.629137 TCACACAAAGGCTACCTAACGA 59.371 45.455 0.00 0.00 31.13 3.85
735 788 3.034721 TCACACAAAGGCTACCTAACG 57.965 47.619 0.00 0.00 31.13 3.18
736 789 5.106277 GGATTTCACACAAAGGCTACCTAAC 60.106 44.000 0.00 0.00 31.13 2.34
737 790 5.007682 GGATTTCACACAAAGGCTACCTAA 58.992 41.667 0.00 0.00 31.13 2.69
738 791 4.288626 AGGATTTCACACAAAGGCTACCTA 59.711 41.667 0.00 0.00 31.13 3.08
739 792 3.074538 AGGATTTCACACAAAGGCTACCT 59.925 43.478 0.00 0.00 33.87 3.08
740 793 3.421844 AGGATTTCACACAAAGGCTACC 58.578 45.455 0.00 0.00 0.00 3.18
741 794 5.246307 ACTAGGATTTCACACAAAGGCTAC 58.754 41.667 0.00 0.00 0.00 3.58
742 795 5.499004 ACTAGGATTTCACACAAAGGCTA 57.501 39.130 0.00 0.00 0.00 3.93
743 796 4.373156 ACTAGGATTTCACACAAAGGCT 57.627 40.909 0.00 0.00 0.00 4.58
744 797 5.453567 AAACTAGGATTTCACACAAAGGC 57.546 39.130 0.00 0.00 0.00 4.35
827 881 1.542915 AGCTACAGTTTGCAGGCAATG 59.457 47.619 7.62 6.78 35.70 2.82
842 899 2.633488 CACCAAAGAGGGCTAAGCTAC 58.367 52.381 0.00 0.00 43.89 3.58
850 907 1.676967 CTCCAGCACCAAAGAGGGC 60.677 63.158 0.00 0.00 43.89 5.19
856 913 6.597672 CACATTATTACTACTCCAGCACCAAA 59.402 38.462 0.00 0.00 0.00 3.28
857 914 6.112734 CACATTATTACTACTCCAGCACCAA 58.887 40.000 0.00 0.00 0.00 3.67
907 964 9.565213 CTGAAAATAAAATAGACAAGAGCTTGG 57.435 33.333 14.14 0.00 44.45 3.61
927 984 9.730420 GAAAGTTTATAAAGCTGACACTGAAAA 57.270 29.630 0.00 0.00 0.00 2.29
928 985 9.120538 AGAAAGTTTATAAAGCTGACACTGAAA 57.879 29.630 0.00 0.00 0.00 2.69
930 987 7.715249 ACAGAAAGTTTATAAAGCTGACACTGA 59.285 33.333 17.33 0.00 0.00 3.41
946 1020 7.961283 GTGTTACGAAAGAAAGACAGAAAGTTT 59.039 33.333 0.00 0.00 0.00 2.66
947 1021 7.333672 AGTGTTACGAAAGAAAGACAGAAAGTT 59.666 33.333 0.00 0.00 0.00 2.66
948 1022 6.817140 AGTGTTACGAAAGAAAGACAGAAAGT 59.183 34.615 0.00 0.00 0.00 2.66
967 1041 3.576982 AGCTACAGGTGTGCTAAGTGTTA 59.423 43.478 5.57 0.00 33.13 2.41
995 1069 6.427853 GGCTTGCTGGAACTTTTATTTTTGAT 59.572 34.615 0.00 0.00 0.00 2.57
997 1071 5.526846 TGGCTTGCTGGAACTTTTATTTTTG 59.473 36.000 0.00 0.00 0.00 2.44
1014 1090 1.610522 ACAGAGAAACACATGGCTTGC 59.389 47.619 0.00 0.00 0.00 4.01
1138 1214 0.535328 TTCCGGTTCCATTGTCGCAA 60.535 50.000 0.00 0.00 0.00 4.85
1197 1273 5.149973 AGATGCAGGAGATGACATATCAC 57.850 43.478 11.95 2.11 37.79 3.06
1198 1274 5.820404 AAGATGCAGGAGATGACATATCA 57.180 39.130 11.95 0.00 39.83 2.15
1199 1275 8.502387 GTTAAAAGATGCAGGAGATGACATATC 58.498 37.037 1.22 1.22 0.00 1.63
1201 1277 7.337938 TGTTAAAAGATGCAGGAGATGACATA 58.662 34.615 0.00 0.00 0.00 2.29
1202 1278 6.182627 TGTTAAAAGATGCAGGAGATGACAT 58.817 36.000 0.00 0.00 0.00 3.06
1204 1280 6.094603 ACATGTTAAAAGATGCAGGAGATGAC 59.905 38.462 0.00 0.00 33.33 3.06
1205 1281 6.182627 ACATGTTAAAAGATGCAGGAGATGA 58.817 36.000 0.00 0.00 33.33 2.92
1206 1282 6.094464 TGACATGTTAAAAGATGCAGGAGATG 59.906 38.462 0.00 0.00 33.33 2.90
1207 1283 6.182627 TGACATGTTAAAAGATGCAGGAGAT 58.817 36.000 0.00 0.00 33.33 2.75
1210 1286 6.182627 AGATGACATGTTAAAAGATGCAGGA 58.817 36.000 0.00 0.00 33.33 3.86
1211 1287 6.446781 AGATGACATGTTAAAAGATGCAGG 57.553 37.500 0.00 0.00 33.33 4.85
1212 1288 6.318144 AGGAGATGACATGTTAAAAGATGCAG 59.682 38.462 0.00 0.00 33.33 4.41
1213 1289 6.094464 CAGGAGATGACATGTTAAAAGATGCA 59.906 38.462 0.00 0.00 33.33 3.96
1215 1291 6.094464 TGCAGGAGATGACATGTTAAAAGATG 59.906 38.462 0.00 0.00 35.92 2.90
1218 1294 5.885230 TGCAGGAGATGACATGTTAAAAG 57.115 39.130 0.00 0.00 0.00 2.27
1220 1296 5.587443 CAGATGCAGGAGATGACATGTTAAA 59.413 40.000 0.00 0.00 0.00 1.52
1221 1297 5.121105 CAGATGCAGGAGATGACATGTTAA 58.879 41.667 0.00 0.00 0.00 2.01
1694 1781 7.083858 GTGCAAAGCATCACTGAACTATAAAA 58.916 34.615 0.00 0.00 41.91 1.52
1695 1782 6.206438 TGTGCAAAGCATCACTGAACTATAAA 59.794 34.615 0.00 0.00 41.91 1.40
1698 1785 4.074259 TGTGCAAAGCATCACTGAACTAT 58.926 39.130 0.00 0.00 41.91 2.12
1718 1824 8.353423 ACAGAATCATAAAGGCAAATTACTGT 57.647 30.769 0.00 0.00 0.00 3.55
1728 1835 8.571336 AGCATAATGTAACAGAATCATAAAGGC 58.429 33.333 0.00 0.00 0.00 4.35
1746 1853 2.646930 TCAGAAGGGTGCAGCATAATG 58.353 47.619 19.06 12.86 0.00 1.90
1747 1854 3.589951 ATCAGAAGGGTGCAGCATAAT 57.410 42.857 19.06 0.00 0.00 1.28
1849 1960 8.340618 AGCAGTAAGAAATAAGAAGCAATCAA 57.659 30.769 0.00 0.00 0.00 2.57
1874 1985 7.041107 GCAATTGTTTTCCCTAATGCAATAGA 58.959 34.615 10.50 0.00 0.00 1.98
1885 1996 8.823220 ATATACTACTTGCAATTGTTTTCCCT 57.177 30.769 7.40 0.00 0.00 4.20
1926 2037 4.074970 CAGCCACAACAAAGTAATCCTCT 58.925 43.478 0.00 0.00 0.00 3.69
2006 2117 1.663695 ATCCTTCGTAAATGGGCACG 58.336 50.000 0.00 0.00 39.48 5.34
2507 2618 2.997315 CTCTCAGGTGGGGCGACA 60.997 66.667 0.00 0.00 0.00 4.35
2513 2624 1.827969 CTGTACTTCCTCTCAGGTGGG 59.172 57.143 0.00 0.00 36.53 4.61
2589 2700 2.979678 AGAAGGTAGGGCTGAACAAGAA 59.020 45.455 0.00 0.00 0.00 2.52
2624 2737 2.649531 TTTCAGATGTTGGTTCCGGT 57.350 45.000 0.00 0.00 0.00 5.28
2714 2831 1.557099 AGCACTTCCTGTGGACGATA 58.443 50.000 0.00 0.00 46.27 2.92
2749 2866 2.960129 GATAACGGCGGCGGAGTG 60.960 66.667 35.05 7.89 0.00 3.51
2750 2867 2.694829 GATGATAACGGCGGCGGAGT 62.695 60.000 35.05 21.43 0.00 3.85
2859 2978 4.404394 CACGTATATAGGTGGCATATCCCA 59.596 45.833 22.34 0.00 38.15 4.37
2928 3053 6.287525 TGATCTCACAAACACACTGACAATA 58.712 36.000 0.00 0.00 0.00 1.90
3041 3168 5.832060 CCATGATTCTTCCCTTAAGAGCAAT 59.168 40.000 3.36 0.00 44.95 3.56
3042 3169 5.195940 CCATGATTCTTCCCTTAAGAGCAA 58.804 41.667 3.36 0.00 44.95 3.91
3044 3171 4.786425 ACCATGATTCTTCCCTTAAGAGC 58.214 43.478 3.36 0.00 44.95 4.09
3045 3172 8.986929 ATTTACCATGATTCTTCCCTTAAGAG 57.013 34.615 3.36 0.00 44.95 2.85
3144 3271 3.063997 GCCTTATGAACCAGTGATGAACG 59.936 47.826 0.00 0.00 0.00 3.95
3221 3410 9.643693 AATATTTGCTTTTCACTTTGTCCATAG 57.356 29.630 0.00 0.00 0.00 2.23
3224 3413 8.637986 AGTAATATTTGCTTTTCACTTTGTCCA 58.362 29.630 0.00 0.00 0.00 4.02
3321 3510 7.930865 GGAGCAAATGAATGTAGACTCTAGAAT 59.069 37.037 0.00 0.00 0.00 2.40
3331 3520 5.991328 ACATACGGAGCAAATGAATGTAG 57.009 39.130 0.00 0.00 0.00 2.74
3383 3577 9.127560 TCAAATACTCCATCCATCCCTAAATAT 57.872 33.333 0.00 0.00 0.00 1.28
3392 3586 8.940952 GCTTACTATTCAAATACTCCATCCATC 58.059 37.037 0.00 0.00 0.00 3.51
3394 3588 7.147391 TGGCTTACTATTCAAATACTCCATCCA 60.147 37.037 0.00 0.00 0.00 3.41
3395 3589 7.224297 TGGCTTACTATTCAAATACTCCATCC 58.776 38.462 0.00 0.00 0.00 3.51
3398 3592 8.871629 TTTTGGCTTACTATTCAAATACTCCA 57.128 30.769 0.00 0.00 0.00 3.86
3472 3666 3.810310 AAAGGCAATGTTTTTCGTCCA 57.190 38.095 0.00 0.00 0.00 4.02
3488 3683 8.025445 GCTAATGCATGATGTTCCTAATAAAGG 58.975 37.037 0.00 0.00 42.26 3.11
3518 3761 6.183360 ACCAGAACTCAAATCATTTCAAAGCA 60.183 34.615 0.00 0.00 0.00 3.91
3521 3764 7.780064 TGAACCAGAACTCAAATCATTTCAAA 58.220 30.769 0.00 0.00 0.00 2.69
3529 3772 8.424274 ACAAAATTTGAACCAGAACTCAAATC 57.576 30.769 13.19 0.00 46.52 2.17
3610 3856 9.336171 AGCAGAAGAATAGGAAATGAGATAAAC 57.664 33.333 0.00 0.00 0.00 2.01
3614 3860 7.256619 CCCTAGCAGAAGAATAGGAAATGAGAT 60.257 40.741 0.00 0.00 38.73 2.75
3617 3863 5.072329 CCCCTAGCAGAAGAATAGGAAATGA 59.928 44.000 0.00 0.00 38.73 2.57
3618 3864 5.312079 CCCCTAGCAGAAGAATAGGAAATG 58.688 45.833 0.00 0.00 38.73 2.32
3620 3866 3.136626 GCCCCTAGCAGAAGAATAGGAAA 59.863 47.826 0.00 0.00 42.97 3.13
3621 3867 2.706190 GCCCCTAGCAGAAGAATAGGAA 59.294 50.000 0.00 0.00 42.97 3.36
3622 3868 2.330216 GCCCCTAGCAGAAGAATAGGA 58.670 52.381 0.00 0.00 42.97 2.94
3623 3869 2.849294 GCCCCTAGCAGAAGAATAGG 57.151 55.000 0.00 0.00 42.97 2.57
3652 3933 1.918262 TGCTCAGATTCATCAGGGGTT 59.082 47.619 0.00 0.00 0.00 4.11
3748 4029 4.766373 TCTTGACAAGCATGCAGGAATAAA 59.234 37.500 21.98 4.41 0.00 1.40
3886 4168 4.141367 TGTGTAGGGGTGTTGATTCTCAAA 60.141 41.667 0.00 0.00 38.22 2.69
3950 4232 3.499918 CAGGTCAGTAGTGGCTTTCTTTG 59.500 47.826 1.48 0.00 0.00 2.77
3951 4233 3.136626 ACAGGTCAGTAGTGGCTTTCTTT 59.863 43.478 1.48 0.00 0.00 2.52
3952 4234 2.706190 ACAGGTCAGTAGTGGCTTTCTT 59.294 45.455 1.48 0.00 0.00 2.52
3953 4235 2.037772 CACAGGTCAGTAGTGGCTTTCT 59.962 50.000 1.48 0.00 0.00 2.52
3954 4236 2.037251 TCACAGGTCAGTAGTGGCTTTC 59.963 50.000 1.48 0.00 34.17 2.62
3962 4248 4.382470 CCAAGGATCTTCACAGGTCAGTAG 60.382 50.000 0.00 0.00 30.64 2.57
4012 4298 2.311080 TTTGCAGTTTTCGCGCGTCA 62.311 50.000 30.98 15.35 0.00 4.35
4041 4329 5.106357 GGCTCCTGATTGTCTTTTCTTTCTC 60.106 44.000 0.00 0.00 0.00 2.87
4052 4340 3.788672 AATCGGGCTCCTGATTGTC 57.211 52.632 19.28 0.00 46.66 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.