Multiple sequence alignment - TraesCS1A01G020400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G020400 chr1A 100.000 5728 0 0 1 5728 10056927 10051200 0.000000e+00 10578.0
1 TraesCS1A01G020400 chr1A 91.765 85 7 0 5603 5687 27400109 27400025 1.010000e-22 119.0
2 TraesCS1A01G020400 chr1B 91.158 4829 307 57 439 5185 11700493 11695703 0.000000e+00 6442.0
3 TraesCS1A01G020400 chr1B 86.373 954 85 18 3326 4276 52483827 52484738 0.000000e+00 1000.0
4 TraesCS1A01G020400 chr1B 86.407 949 84 18 3331 4276 52608300 52609206 0.000000e+00 996.0
5 TraesCS1A01G020400 chr1B 85.919 838 67 21 234 1044 655451927 655452740 0.000000e+00 846.0
6 TraesCS1A01G020400 chr1B 85.845 438 47 12 4341 4769 52485638 52486069 8.750000e-123 451.0
7 TraesCS1A01G020400 chr1B 85.845 438 47 12 4341 4769 52610104 52610535 8.750000e-123 451.0
8 TraesCS1A01G020400 chr1B 92.411 224 17 0 802 1025 36408515 36408292 2.580000e-83 320.0
9 TraesCS1A01G020400 chr1B 87.640 267 17 5 150 407 11700541 11700282 4.340000e-76 296.0
10 TraesCS1A01G020400 chr1B 94.118 68 4 0 104 171 11700636 11700569 2.820000e-18 104.0
11 TraesCS1A01G020400 chr1D 93.228 4164 221 35 406 4520 8627355 8623204 0.000000e+00 6071.0
12 TraesCS1A01G020400 chr1D 93.127 873 46 9 4554 5418 8623203 8622337 0.000000e+00 1267.0
13 TraesCS1A01G020400 chr1D 89.575 259 15 4 146 399 8627844 8627593 9.260000e-83 318.0
14 TraesCS1A01G020400 chr1D 86.364 132 17 1 4072 4202 8331860 8331729 5.980000e-30 143.0
15 TraesCS1A01G020400 chr1D 90.278 72 7 0 76 147 8628383 8628312 1.700000e-15 95.3
16 TraesCS1A01G020400 chr1D 100.000 32 0 0 5444 5475 8621799 8621768 6.200000e-05 60.2
17 TraesCS1A01G020400 chr3B 86.255 924 74 18 150 1044 663489793 663490692 0.000000e+00 953.0
18 TraesCS1A01G020400 chr7B 86.585 902 68 22 175 1044 74042164 74041284 0.000000e+00 946.0
19 TraesCS1A01G020400 chr7B 92.411 224 17 0 802 1025 480089433 480089210 2.580000e-83 320.0
20 TraesCS1A01G020400 chr6B 92.411 224 17 0 802 1025 178143648 178143871 2.580000e-83 320.0
21 TraesCS1A01G020400 chr6B 92.135 89 7 0 5600 5688 179987214 179987302 6.030000e-25 126.0
22 TraesCS1A01G020400 chr5B 92.411 224 17 0 802 1025 699344269 699344046 2.580000e-83 320.0
23 TraesCS1A01G020400 chr4A 98.837 86 1 0 5602 5687 590661609 590661524 2.760000e-33 154.0
24 TraesCS1A01G020400 chr4A 90.526 95 7 2 5602 5695 15773054 15772961 2.170000e-24 124.0
25 TraesCS1A01G020400 chr6A 97.674 86 2 0 5602 5687 573423755 573423670 1.290000e-31 148.0
26 TraesCS1A01G020400 chr6A 96.591 88 3 0 5600 5687 33306564 33306651 4.620000e-31 147.0
27 TraesCS1A01G020400 chr2A 97.674 86 2 0 5603 5688 758265636 758265551 1.290000e-31 148.0
28 TraesCS1A01G020400 chr5A 96.471 85 3 0 5603 5687 80934740 80934656 2.150000e-29 141.0
29 TraesCS1A01G020400 chr2B 92.553 94 3 4 5603 5694 23029138 23029047 1.300000e-26 132.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G020400 chr1A 10051200 10056927 5727 True 10578.000000 10578 100.0000 1 5728 1 chr1A.!!$R1 5727
1 TraesCS1A01G020400 chr1B 11695703 11700636 4933 True 2280.666667 6442 90.9720 104 5185 3 chr1B.!!$R2 5081
2 TraesCS1A01G020400 chr1B 655451927 655452740 813 False 846.000000 846 85.9190 234 1044 1 chr1B.!!$F1 810
3 TraesCS1A01G020400 chr1B 52483827 52486069 2242 False 725.500000 1000 86.1090 3326 4769 2 chr1B.!!$F2 1443
4 TraesCS1A01G020400 chr1B 52608300 52610535 2235 False 723.500000 996 86.1260 3331 4769 2 chr1B.!!$F3 1438
5 TraesCS1A01G020400 chr1D 8621768 8628383 6615 True 1562.300000 6071 93.2416 76 5475 5 chr1D.!!$R2 5399
6 TraesCS1A01G020400 chr3B 663489793 663490692 899 False 953.000000 953 86.2550 150 1044 1 chr3B.!!$F1 894
7 TraesCS1A01G020400 chr7B 74041284 74042164 880 True 946.000000 946 86.5850 175 1044 1 chr7B.!!$R1 869

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
630 1370 0.398381 TGCCCTGCTTTTTGGTCCTT 60.398 50.0 0.00 0.00 0.00 3.36 F
1440 2184 1.498865 CCTGTGCTGTGACGACAACC 61.499 60.0 0.00 0.00 0.00 3.77 F
2073 2817 0.250234 TTCTCCAGATCGCTTGTGGG 59.750 55.0 0.00 0.00 31.70 4.61 F
3079 3854 0.326264 AAGAGGCCATGACACTGGTC 59.674 55.0 5.01 1.56 44.57 4.02 F
3203 3978 0.669318 TTGGACCAACTGATCGTCGC 60.669 55.0 1.69 0.00 0.00 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1602 2346 0.188342 AGGTGAACAGTTGGCCCATT 59.812 50.000 0.00 0.00 0.00 3.16 R
3188 3963 0.865769 GTTTGCGACGATCAGTTGGT 59.134 50.000 0.00 0.00 34.75 3.67 R
3932 4715 0.107703 TATTGCTGTGGGCTCTTCGG 60.108 55.000 0.00 0.00 42.39 4.30 R
4643 6283 1.134226 CGTACACTTTCTCGCGGTTT 58.866 50.000 6.13 0.00 0.00 3.27 R
4948 6589 1.452108 GACAGGGCCCATGCTACAC 60.452 63.158 27.56 2.16 37.74 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 5.925509 GTATGGTACCATAGGAGCAAAAGA 58.074 41.667 30.91 8.07 39.29 2.52
27 28 5.653255 ATGGTACCATAGGAGCAAAAGAT 57.347 39.130 26.30 0.00 34.49 2.40
28 29 5.450818 TGGTACCATAGGAGCAAAAGATT 57.549 39.130 11.60 0.00 0.00 2.40
29 30 5.826643 TGGTACCATAGGAGCAAAAGATTT 58.173 37.500 11.60 0.00 0.00 2.17
30 31 6.252995 TGGTACCATAGGAGCAAAAGATTTT 58.747 36.000 11.60 0.00 0.00 1.82
31 32 7.147846 ATGGTACCATAGGAGCAAAAGATTTTG 60.148 37.037 26.30 12.61 41.35 2.44
32 33 6.152831 GGTACCATAGGAGCAAAAGATTTTGT 59.847 38.462 16.93 6.43 46.92 2.83
33 34 6.670695 ACCATAGGAGCAAAAGATTTTGTT 57.329 33.333 16.93 12.34 46.92 2.83
34 35 7.066307 ACCATAGGAGCAAAAGATTTTGTTT 57.934 32.000 16.93 7.98 46.92 2.83
35 36 7.508687 ACCATAGGAGCAAAAGATTTTGTTTT 58.491 30.769 16.93 8.30 46.92 2.43
36 37 7.657354 ACCATAGGAGCAAAAGATTTTGTTTTC 59.343 33.333 16.93 12.51 46.92 2.29
37 38 7.874528 CCATAGGAGCAAAAGATTTTGTTTTCT 59.125 33.333 16.93 14.32 46.92 2.52
38 39 9.912634 CATAGGAGCAAAAGATTTTGTTTTCTA 57.087 29.630 16.93 15.53 46.92 2.10
40 41 8.011844 AGGAGCAAAAGATTTTGTTTTCTAGT 57.988 30.769 16.93 3.48 46.92 2.57
41 42 7.922811 AGGAGCAAAAGATTTTGTTTTCTAGTG 59.077 33.333 16.93 0.00 46.92 2.74
42 43 7.706607 GGAGCAAAAGATTTTGTTTTCTAGTGT 59.293 33.333 16.93 0.00 46.92 3.55
43 44 9.730420 GAGCAAAAGATTTTGTTTTCTAGTGTA 57.270 29.630 16.93 0.00 46.92 2.90
44 45 9.736023 AGCAAAAGATTTTGTTTTCTAGTGTAG 57.264 29.630 16.93 0.00 46.92 2.74
45 46 8.968242 GCAAAAGATTTTGTTTTCTAGTGTAGG 58.032 33.333 16.93 0.00 46.92 3.18
46 47 8.968242 CAAAAGATTTTGTTTTCTAGTGTAGGC 58.032 33.333 9.40 0.00 41.87 3.93
47 48 8.465273 AAAGATTTTGTTTTCTAGTGTAGGCT 57.535 30.769 0.00 0.00 0.00 4.58
48 49 7.674471 AGATTTTGTTTTCTAGTGTAGGCTC 57.326 36.000 0.00 0.00 0.00 4.70
49 50 6.655425 AGATTTTGTTTTCTAGTGTAGGCTCC 59.345 38.462 0.00 0.00 0.00 4.70
50 51 4.967084 TTGTTTTCTAGTGTAGGCTCCA 57.033 40.909 0.00 0.00 0.00 3.86
51 52 4.967084 TGTTTTCTAGTGTAGGCTCCAA 57.033 40.909 0.00 0.00 0.00 3.53
52 53 5.499004 TGTTTTCTAGTGTAGGCTCCAAT 57.501 39.130 0.00 0.00 0.00 3.16
53 54 5.876357 TGTTTTCTAGTGTAGGCTCCAATT 58.124 37.500 0.00 0.00 0.00 2.32
54 55 5.705441 TGTTTTCTAGTGTAGGCTCCAATTG 59.295 40.000 0.00 0.00 0.00 2.32
55 56 5.755409 TTTCTAGTGTAGGCTCCAATTGA 57.245 39.130 7.12 0.00 0.00 2.57
56 57 5.344743 TTCTAGTGTAGGCTCCAATTGAG 57.655 43.478 7.12 3.86 44.47 3.02
57 58 3.706594 TCTAGTGTAGGCTCCAATTGAGG 59.293 47.826 7.12 0.00 41.73 3.86
58 59 2.551270 AGTGTAGGCTCCAATTGAGGA 58.449 47.619 7.12 0.00 41.73 3.71
59 60 3.118531 AGTGTAGGCTCCAATTGAGGAT 58.881 45.455 7.12 0.00 41.73 3.24
60 61 3.118112 AGTGTAGGCTCCAATTGAGGATG 60.118 47.826 7.12 0.00 41.73 3.51
61 62 2.225467 GTAGGCTCCAATTGAGGATGC 58.775 52.381 7.12 3.55 41.73 3.91
62 63 0.627451 AGGCTCCAATTGAGGATGCA 59.373 50.000 7.12 0.00 41.73 3.96
63 64 1.006281 AGGCTCCAATTGAGGATGCAA 59.994 47.619 7.12 0.00 41.73 4.08
64 65 1.135721 GGCTCCAATTGAGGATGCAAC 59.864 52.381 7.12 0.00 41.73 4.17
65 66 2.097825 GCTCCAATTGAGGATGCAACT 58.902 47.619 7.12 0.00 41.73 3.16
66 67 2.494870 GCTCCAATTGAGGATGCAACTT 59.505 45.455 7.12 0.00 41.73 2.66
67 68 3.675228 GCTCCAATTGAGGATGCAACTTG 60.675 47.826 7.12 0.00 41.73 3.16
68 69 3.760151 CTCCAATTGAGGATGCAACTTGA 59.240 43.478 7.12 0.00 36.99 3.02
69 70 3.760151 TCCAATTGAGGATGCAACTTGAG 59.240 43.478 7.12 0.00 31.23 3.02
70 71 3.119245 CCAATTGAGGATGCAACTTGAGG 60.119 47.826 7.12 0.00 0.00 3.86
71 72 3.726557 ATTGAGGATGCAACTTGAGGA 57.273 42.857 0.00 0.00 0.00 3.71
72 73 3.726557 TTGAGGATGCAACTTGAGGAT 57.273 42.857 0.00 0.00 0.00 3.24
73 74 3.726557 TGAGGATGCAACTTGAGGATT 57.273 42.857 0.00 0.00 0.00 3.01
74 75 4.038271 TGAGGATGCAACTTGAGGATTT 57.962 40.909 0.00 0.00 0.00 2.17
84 85 6.183360 TGCAACTTGAGGATTTTGTCAGAAAT 60.183 34.615 0.00 0.00 32.16 2.17
85 86 6.145048 GCAACTTGAGGATTTTGTCAGAAATG 59.855 38.462 0.00 0.00 29.75 2.32
87 88 8.352201 CAACTTGAGGATTTTGTCAGAAATGTA 58.648 33.333 0.00 0.00 29.75 2.29
93 94 5.105756 GGATTTTGTCAGAAATGTAGGGGTG 60.106 44.000 0.00 0.00 29.75 4.61
95 96 4.927267 TTGTCAGAAATGTAGGGGTGAT 57.073 40.909 0.00 0.00 0.00 3.06
189 659 9.294030 CAGATTTCGATTTTTATCCTGGAAAAG 57.706 33.333 0.00 0.00 0.00 2.27
194 664 7.302524 TCGATTTTTATCCTGGAAAAGAAACG 58.697 34.615 0.00 5.21 0.00 3.60
250 721 7.601130 GGGGTTCACCTAATTTTACAAAATGTC 59.399 37.037 0.86 0.00 37.78 3.06
251 722 7.327518 GGGTTCACCTAATTTTACAAAATGTCG 59.672 37.037 0.86 0.00 36.10 4.35
323 798 3.689649 ACCGCAAACTTATTCTGACATCC 59.310 43.478 0.00 0.00 0.00 3.51
324 799 3.941483 CCGCAAACTTATTCTGACATCCT 59.059 43.478 0.00 0.00 0.00 3.24
325 800 4.201851 CCGCAAACTTATTCTGACATCCTG 60.202 45.833 0.00 0.00 0.00 3.86
326 801 4.631377 CGCAAACTTATTCTGACATCCTGA 59.369 41.667 0.00 0.00 0.00 3.86
327 802 5.220548 CGCAAACTTATTCTGACATCCTGAG 60.221 44.000 0.00 0.00 0.00 3.35
328 803 5.877012 GCAAACTTATTCTGACATCCTGAGA 59.123 40.000 0.00 0.00 0.00 3.27
393 868 1.068264 GCTGCCCTGCTTTTCTGTAAC 60.068 52.381 0.00 0.00 0.00 2.50
421 1131 5.065218 AGTTCTGCTTTTCTGTAACACTGTG 59.935 40.000 6.19 6.19 0.00 3.66
424 1134 3.631686 TGCTTTTCTGTAACACTGTGCAT 59.368 39.130 7.90 0.00 0.00 3.96
425 1135 4.819088 TGCTTTTCTGTAACACTGTGCATA 59.181 37.500 7.90 0.00 0.00 3.14
508 1224 4.497291 TGTTACCTGAAGTTGTTGTCCT 57.503 40.909 0.00 0.00 0.00 3.85
509 1225 4.850680 TGTTACCTGAAGTTGTTGTCCTT 58.149 39.130 0.00 0.00 0.00 3.36
547 1287 6.540189 AGGATCACAATTACACTGAATACAGC 59.460 38.462 0.00 0.00 46.95 4.40
554 1294 7.041372 ACAATTACACTGAATACAGCGAACTTT 60.041 33.333 0.00 0.00 46.95 2.66
559 1299 5.848036 CACTGAATACAGCGAACTTTTTCTG 59.152 40.000 0.00 0.00 46.95 3.02
586 1326 5.667466 TCCGGTGAAATACTAGTTCATTCC 58.333 41.667 0.00 0.00 37.34 3.01
592 1332 8.669243 GGTGAAATACTAGTTCATTCCTTTCAG 58.331 37.037 0.00 0.00 37.34 3.02
630 1370 0.398381 TGCCCTGCTTTTTGGTCCTT 60.398 50.000 0.00 0.00 0.00 3.36
659 1401 6.863126 GCCATCATGGTTACTATTATTTGCAC 59.137 38.462 5.31 0.00 40.46 4.57
692 1434 3.328382 TGAATTCGTTACCTCCACTGG 57.672 47.619 0.04 0.00 0.00 4.00
698 1440 5.779529 TTCGTTACCTCCACTGGATATAC 57.220 43.478 0.00 0.00 0.00 1.47
722 1464 1.740025 GTACTGTCTGCTTTCCATGCC 59.260 52.381 0.00 0.00 0.00 4.40
822 1566 3.323751 TTTAGTCGGCTTCCCTACAAC 57.676 47.619 0.00 0.00 29.49 3.32
828 1572 1.723220 GGCTTCCCTACAACGACTTC 58.277 55.000 0.00 0.00 0.00 3.01
832 1576 3.724374 CTTCCCTACAACGACTTCACAA 58.276 45.455 0.00 0.00 0.00 3.33
899 1643 2.911484 AGCTTATAACTCCAGCAGCAC 58.089 47.619 0.00 0.00 35.88 4.40
910 1654 4.020218 ACTCCAGCAGCACTGTAATTCTAA 60.020 41.667 0.00 0.00 45.68 2.10
1269 2013 3.731728 GGGGTCAGGCATGCCTCA 61.732 66.667 36.65 23.92 46.28 3.86
1434 2178 2.078849 TTCATACCTGTGCTGTGACG 57.921 50.000 0.00 0.00 0.00 4.35
1440 2184 1.498865 CCTGTGCTGTGACGACAACC 61.499 60.000 0.00 0.00 0.00 3.77
1443 2187 2.279918 GCTGTGACGACAACCGGT 60.280 61.111 0.00 0.00 43.93 5.28
1461 2205 2.124411 GGTGAGCTTTATACCTGGGGA 58.876 52.381 0.00 0.00 0.00 4.81
1569 2313 4.706962 GGTCTCCAAATTGCCTATGTTTCT 59.293 41.667 0.00 0.00 0.00 2.52
1572 2316 5.774690 TCTCCAAATTGCCTATGTTTCTTGT 59.225 36.000 0.00 0.00 0.00 3.16
1602 2346 3.208594 GCATACAGCCTTGATCACATCA 58.791 45.455 0.00 0.00 37.23 3.07
1629 2373 2.618709 CCAACTGTTCACCTTTGGAGAC 59.381 50.000 0.00 0.00 40.97 3.36
1710 2454 0.683973 AGTCACTGTCAGGGCTGAAG 59.316 55.000 4.53 0.00 41.85 3.02
1716 2460 2.289945 ACTGTCAGGGCTGAAGACAATC 60.290 50.000 4.53 0.00 41.27 2.67
1782 2526 2.807045 GTCACTCAGTCCAGCGCG 60.807 66.667 0.00 0.00 0.00 6.86
1932 2676 1.611673 GCATGTGGCCACAGTCTTACT 60.612 52.381 39.29 21.32 45.48 2.24
2043 2787 6.647334 TGTTTGGTTGAAGATAAGATTGCA 57.353 33.333 0.00 0.00 0.00 4.08
2049 2793 6.489700 TGGTTGAAGATAAGATTGCAAGTGAA 59.510 34.615 4.94 0.00 0.00 3.18
2073 2817 0.250234 TTCTCCAGATCGCTTGTGGG 59.750 55.000 0.00 0.00 31.70 4.61
2109 2853 4.034742 GCGGTTTTGACAAGTAGAAGTGAA 59.965 41.667 0.00 0.00 0.00 3.18
2118 2862 7.902032 TGACAAGTAGAAGTGAAGTTTTTACG 58.098 34.615 0.00 0.00 0.00 3.18
2322 3066 0.679960 GGCAGCCATTCGGGTTTACT 60.680 55.000 6.55 0.00 42.67 2.24
2343 3087 3.782046 TCGAAAGAGGCATAACTGCTAC 58.218 45.455 0.00 0.00 41.39 3.58
2471 3215 6.410540 ACTCCAAGTTAAAGAATGCCTCTAG 58.589 40.000 0.00 0.00 32.46 2.43
2531 3281 5.395768 GCAATGGAGAAGCTAGAGTAGGAAA 60.396 44.000 0.00 0.00 0.00 3.13
2536 3286 5.364157 GGAGAAGCTAGAGTAGGAAAATCCA 59.636 44.000 0.00 0.00 39.61 3.41
2541 3291 5.908247 AGCTAGAGTAGGAAAATCCATCCTT 59.092 40.000 0.00 0.00 45.06 3.36
2640 3390 3.709587 TCTCCGGAATCCTCAAGTTAGT 58.290 45.455 5.23 0.00 0.00 2.24
2829 3579 4.823989 CCAACAACTCATGGTCTTTCTCTT 59.176 41.667 0.00 0.00 31.84 2.85
2832 3582 5.066593 ACAACTCATGGTCTTTCTCTTTCC 58.933 41.667 0.00 0.00 0.00 3.13
2909 3659 2.753966 GGCTGCGTGCACAGGTATG 61.754 63.158 18.64 0.00 45.15 2.39
2916 3666 2.674177 GCGTGCACAGGTATGTACTTCT 60.674 50.000 18.64 0.00 37.65 2.85
2924 3674 7.041372 TGCACAGGTATGTACTTCTTTTTCTTC 60.041 37.037 0.00 0.00 37.65 2.87
2926 3676 8.499162 CACAGGTATGTACTTCTTTTTCTTCAG 58.501 37.037 0.00 0.00 37.65 3.02
2927 3677 7.173390 ACAGGTATGTACTTCTTTTTCTTCAGC 59.827 37.037 0.00 0.00 38.09 4.26
2947 3708 2.545106 GCAGAAATTTGCTTGGGTGTTG 59.455 45.455 0.00 0.00 40.89 3.33
2950 3711 5.058490 CAGAAATTTGCTTGGGTGTTGATT 58.942 37.500 0.00 0.00 0.00 2.57
2952 3713 6.146021 CAGAAATTTGCTTGGGTGTTGATTAC 59.854 38.462 0.00 0.00 0.00 1.89
2953 3714 5.806654 AATTTGCTTGGGTGTTGATTACT 57.193 34.783 0.00 0.00 0.00 2.24
2954 3715 4.582701 TTTGCTTGGGTGTTGATTACTG 57.417 40.909 0.00 0.00 0.00 2.74
2955 3716 3.222173 TGCTTGGGTGTTGATTACTGT 57.778 42.857 0.00 0.00 0.00 3.55
2956 3717 2.884012 TGCTTGGGTGTTGATTACTGTG 59.116 45.455 0.00 0.00 0.00 3.66
2957 3718 2.884639 GCTTGGGTGTTGATTACTGTGT 59.115 45.455 0.00 0.00 0.00 3.72
2958 3719 3.304659 GCTTGGGTGTTGATTACTGTGTG 60.305 47.826 0.00 0.00 0.00 3.82
2959 3720 3.569194 TGGGTGTTGATTACTGTGTGT 57.431 42.857 0.00 0.00 0.00 3.72
3013 3788 2.417719 GTTGACAGCCTGAGAAATCGT 58.582 47.619 0.00 0.00 0.00 3.73
3079 3854 0.326264 AAGAGGCCATGACACTGGTC 59.674 55.000 5.01 1.56 44.57 4.02
3158 3933 6.015519 AGCACAGGTAATTTTCAATGCTGTAA 60.016 34.615 5.66 0.00 40.51 2.41
3160 3935 6.586082 CACAGGTAATTTTCAATGCTGTAACC 59.414 38.462 0.00 0.00 0.00 2.85
3181 3956 3.629398 CCCTCTTGGTTTGTATCATGCTC 59.371 47.826 0.00 0.00 0.00 4.26
3188 3963 6.000246 TGGTTTGTATCATGCTCTATTGGA 58.000 37.500 0.00 0.00 0.00 3.53
3199 3974 3.126831 GCTCTATTGGACCAACTGATCG 58.873 50.000 9.67 1.73 0.00 3.69
3200 3975 3.430929 GCTCTATTGGACCAACTGATCGT 60.431 47.826 9.67 0.00 0.00 3.73
3203 3978 0.669318 TTGGACCAACTGATCGTCGC 60.669 55.000 1.69 0.00 0.00 5.19
3219 3994 2.783284 CGTCGCAAACCATAATGCATTC 59.217 45.455 16.86 0.00 42.68 2.67
3228 4003 7.117236 GCAAACCATAATGCATTCCAATAGATG 59.883 37.037 16.86 11.74 42.12 2.90
3369 4146 2.953648 TCAGCCGAATGCATCATCAAAT 59.046 40.909 0.00 0.00 44.83 2.32
3583 4361 5.629079 GGTACCTCTTTTCACCAGAAATG 57.371 43.478 4.06 0.00 42.90 2.32
3694 4475 6.534079 GCTTATGATTTCAATGAAGCAAAGCT 59.466 34.615 21.79 0.00 42.56 3.74
3714 4495 2.194201 AGTACATGTTCCAAACGGGG 57.806 50.000 2.30 0.00 37.22 5.73
3728 4510 2.125106 GGGGTCGAGCCACATGTC 60.125 66.667 32.94 12.49 41.46 3.06
3932 4715 2.340443 GGATCGGATCGCCCTCAC 59.660 66.667 11.62 0.00 0.00 3.51
4028 4811 2.876581 AGGTCCCTTCAAAATGGTGAC 58.123 47.619 0.00 0.00 0.00 3.67
4032 4815 2.158740 TCCCTTCAAAATGGTGACGACA 60.159 45.455 0.00 0.00 0.00 4.35
4254 5042 6.707440 TTACACACAAACAACTCATGGAAT 57.293 33.333 0.00 0.00 0.00 3.01
4301 5105 1.065701 CGATCTTACCGTCCAGACAGG 59.934 57.143 0.00 3.27 39.47 4.00
4302 5106 2.376109 GATCTTACCGTCCAGACAGGA 58.624 52.381 13.24 0.00 46.75 3.86
4317 5121 5.456907 CCAGACAGGAGAGAGCCTATAGTAA 60.457 48.000 0.00 0.00 41.22 2.24
4322 5126 4.775253 AGGAGAGAGCCTATAGTAAATGGC 59.225 45.833 0.00 0.00 45.21 4.40
4343 5974 2.192664 TTGGCCACACGTTCATATGT 57.807 45.000 3.88 0.00 0.00 2.29
4356 5987 7.041030 ACACGTTCATATGTGACCAAATTGTAA 60.041 33.333 1.90 0.00 42.72 2.41
4359 5990 9.009327 CGTTCATATGTGACCAAATTGTAATTC 57.991 33.333 1.90 0.00 33.11 2.17
4409 6040 4.538490 TCCCCACCATTTAACACTATCAGT 59.462 41.667 0.00 0.00 0.00 3.41
4443 6075 2.421424 CAGTTATCTTGTTCAGCAGGCC 59.579 50.000 0.00 0.00 0.00 5.19
4496 6132 5.994668 TGTGAGTTGTGTTATACATTCTGCA 59.005 36.000 0.00 0.00 39.48 4.41
4552 6192 7.542130 CCACATTTCCTTGCAAAATCTTACTAC 59.458 37.037 0.00 0.00 0.00 2.73
4572 6212 6.230472 ACTACTTACATTGACATCTTGTGCA 58.770 36.000 0.00 0.00 0.00 4.57
4643 6283 2.035321 GGCTGAAAATTGGTGGAACGAA 59.965 45.455 0.00 0.00 39.39 3.85
4685 6325 1.912417 AGTACAACGTGAGGAGCTCT 58.088 50.000 14.64 0.00 0.00 4.09
4792 6433 2.760092 ACACACAAACTGCAAGACCAAT 59.240 40.909 0.00 0.00 37.43 3.16
4798 6439 4.099881 ACAAACTGCAAGACCAATCAACAT 59.900 37.500 0.00 0.00 37.43 2.71
4810 6451 7.844009 AGACCAATCAACATCAGCAAATTATT 58.156 30.769 0.00 0.00 0.00 1.40
4812 6453 9.241317 GACCAATCAACATCAGCAAATTATTAG 57.759 33.333 0.00 0.00 0.00 1.73
4831 6472 6.892658 ATTAGCAAAACTGTGGTCATACAA 57.107 33.333 0.00 0.00 0.00 2.41
4834 6475 4.644685 AGCAAAACTGTGGTCATACAAACT 59.355 37.500 0.00 0.00 0.00 2.66
4854 6495 1.678970 GGCTGGAGACCGCCAAATT 60.679 57.895 14.85 0.00 40.81 1.82
4889 6530 8.157813 CACTGCAATTTTTATCGTCTTTTCATG 58.842 33.333 0.00 0.00 0.00 3.07
4898 6539 9.982291 TTTTATCGTCTTTTCATGCTGTAATAC 57.018 29.630 0.00 0.00 0.00 1.89
4899 6540 6.604735 ATCGTCTTTTCATGCTGTAATACC 57.395 37.500 0.00 0.00 0.00 2.73
4939 6580 4.765273 AGTTTTTGGTTGGTGTTGAATCC 58.235 39.130 0.00 0.00 0.00 3.01
4948 6589 1.026718 GTGTTGAATCCGCCTGAGGG 61.027 60.000 0.00 0.00 0.00 4.30
5016 6661 1.818674 CAAACAGGGCATGGTACCTTC 59.181 52.381 14.36 1.76 34.05 3.46
5058 6703 2.840651 AGCCATTGTAGCTAGGTGAAGT 59.159 45.455 4.27 0.00 39.29 3.01
5190 6855 3.991773 CTCATTTGAATGGTTGCAAGTGG 59.008 43.478 0.00 0.00 37.03 4.00
5253 6918 2.293122 GCTACACACAATCAGTTGCCAA 59.707 45.455 0.00 0.00 38.96 4.52
5258 6923 4.456911 ACACACAATCAGTTGCCAAGATAG 59.543 41.667 0.00 0.00 38.96 2.08
5260 6925 4.697352 ACACAATCAGTTGCCAAGATAGTC 59.303 41.667 0.00 0.00 38.96 2.59
5280 6945 9.973450 GATAGTCTCTCAATGTTATCTTTAGCA 57.027 33.333 0.00 0.00 0.00 3.49
5328 6993 9.624373 AATAGAAATGAGAACATACATTCTGCT 57.376 29.630 0.00 0.00 39.08 4.24
5486 7666 2.642171 AAAAGGGGGAGGGGAAAATC 57.358 50.000 0.00 0.00 0.00 2.17
5487 7667 0.716591 AAAGGGGGAGGGGAAAATCC 59.283 55.000 0.00 0.00 35.23 3.01
5488 7668 1.580994 AAGGGGGAGGGGAAAATCCG 61.581 60.000 0.00 0.00 37.43 4.18
5489 7669 2.004693 GGGGGAGGGGAAAATCCGA 61.005 63.158 0.00 0.00 37.43 4.55
5490 7670 1.361176 GGGGGAGGGGAAAATCCGAT 61.361 60.000 0.00 0.00 37.43 4.18
5491 7671 1.441695 GGGGAGGGGAAAATCCGATA 58.558 55.000 0.00 0.00 37.43 2.92
5492 7672 1.778484 GGGGAGGGGAAAATCCGATAA 59.222 52.381 0.00 0.00 37.43 1.75
5493 7673 2.378886 GGGGAGGGGAAAATCCGATAAT 59.621 50.000 0.00 0.00 37.43 1.28
5494 7674 3.181422 GGGGAGGGGAAAATCCGATAATT 60.181 47.826 0.00 0.00 37.43 1.40
5495 7675 4.480115 GGGAGGGGAAAATCCGATAATTT 58.520 43.478 0.00 0.00 37.43 1.82
5496 7676 4.280929 GGGAGGGGAAAATCCGATAATTTG 59.719 45.833 0.00 0.00 37.43 2.32
5497 7677 4.893524 GGAGGGGAAAATCCGATAATTTGT 59.106 41.667 0.00 0.00 37.43 2.83
5498 7678 5.362717 GGAGGGGAAAATCCGATAATTTGTT 59.637 40.000 0.00 0.00 37.43 2.83
5499 7679 6.127168 GGAGGGGAAAATCCGATAATTTGTTT 60.127 38.462 0.00 0.00 37.43 2.83
5500 7680 7.252612 AGGGGAAAATCCGATAATTTGTTTT 57.747 32.000 0.00 0.00 37.43 2.43
5501 7681 7.102993 AGGGGAAAATCCGATAATTTGTTTTG 58.897 34.615 0.00 0.00 37.43 2.44
5502 7682 6.315144 GGGGAAAATCCGATAATTTGTTTTGG 59.685 38.462 0.00 0.00 37.43 3.28
5503 7683 7.100409 GGGAAAATCCGATAATTTGTTTTGGA 58.900 34.615 0.00 0.00 37.43 3.53
5504 7684 7.277760 GGGAAAATCCGATAATTTGTTTTGGAG 59.722 37.037 0.00 0.00 37.43 3.86
5505 7685 7.201522 GGAAAATCCGATAATTTGTTTTGGAGC 60.202 37.037 0.00 0.00 0.00 4.70
5506 7686 6.530019 AATCCGATAATTTGTTTTGGAGCT 57.470 33.333 0.00 0.00 0.00 4.09
5507 7687 5.560966 TCCGATAATTTGTTTTGGAGCTC 57.439 39.130 4.71 4.71 0.00 4.09
5508 7688 5.007034 TCCGATAATTTGTTTTGGAGCTCA 58.993 37.500 17.19 0.00 0.00 4.26
5509 7689 5.475220 TCCGATAATTTGTTTTGGAGCTCAA 59.525 36.000 17.19 0.00 0.00 3.02
5510 7690 5.801947 CCGATAATTTGTTTTGGAGCTCAAG 59.198 40.000 17.19 0.00 36.62 3.02
5511 7691 5.287035 CGATAATTTGTTTTGGAGCTCAAGC 59.713 40.000 17.19 4.87 42.49 4.01
5577 7757 9.877178 TGTTTCAATGCTTAAACTTTTAGGAAA 57.123 25.926 0.00 0.00 36.70 3.13
5602 7782 8.974060 AAAAATCCACAGTATAATACGGATGT 57.026 30.769 3.95 0.00 33.58 3.06
5604 7784 9.485206 AAAATCCACAGTATAATACGGATGTAC 57.515 33.333 3.95 0.00 33.58 2.90
5605 7785 8.418597 AATCCACAGTATAATACGGATGTACT 57.581 34.615 3.95 1.14 33.58 2.73
5606 7786 7.444629 TCCACAGTATAATACGGATGTACTC 57.555 40.000 3.57 0.00 32.26 2.59
5607 7787 6.432162 TCCACAGTATAATACGGATGTACTCC 59.568 42.308 3.57 0.00 41.07 3.85
5608 7788 6.349944 CCACAGTATAATACGGATGTACTCCC 60.350 46.154 3.57 0.00 41.49 4.30
5609 7789 6.433404 CACAGTATAATACGGATGTACTCCCT 59.567 42.308 3.57 0.00 41.49 4.20
5610 7790 6.658391 ACAGTATAATACGGATGTACTCCCTC 59.342 42.308 3.57 0.00 41.49 4.30
5611 7791 6.885376 CAGTATAATACGGATGTACTCCCTCT 59.115 42.308 3.57 0.00 41.49 3.69
5612 7792 6.885376 AGTATAATACGGATGTACTCCCTCTG 59.115 42.308 1.14 0.00 41.49 3.35
5613 7793 3.596940 ATACGGATGTACTCCCTCTGT 57.403 47.619 0.00 0.30 41.49 3.41
5614 7794 4.719026 ATACGGATGTACTCCCTCTGTA 57.281 45.455 0.00 2.49 41.49 2.74
5615 7795 2.652590 ACGGATGTACTCCCTCTGTAC 58.347 52.381 0.00 0.00 41.49 2.90
5616 7796 1.955080 CGGATGTACTCCCTCTGTACC 59.045 57.143 0.00 0.00 41.49 3.34
5617 7797 1.955080 GGATGTACTCCCTCTGTACCG 59.045 57.143 0.00 0.00 39.42 4.02
5618 7798 2.422519 GGATGTACTCCCTCTGTACCGA 60.423 54.545 0.00 0.00 39.42 4.69
5619 7799 2.885135 TGTACTCCCTCTGTACCGAA 57.115 50.000 0.00 0.00 39.42 4.30
5620 7800 3.159213 TGTACTCCCTCTGTACCGAAA 57.841 47.619 0.00 0.00 39.42 3.46
5621 7801 3.705051 TGTACTCCCTCTGTACCGAAAT 58.295 45.455 0.00 0.00 39.42 2.17
5622 7802 4.858850 TGTACTCCCTCTGTACCGAAATA 58.141 43.478 0.00 0.00 39.42 1.40
5623 7803 4.641989 TGTACTCCCTCTGTACCGAAATAC 59.358 45.833 0.00 0.00 39.42 1.89
5624 7804 3.705051 ACTCCCTCTGTACCGAAATACA 58.295 45.455 0.00 0.00 33.96 2.29
5625 7805 4.287552 ACTCCCTCTGTACCGAAATACAT 58.712 43.478 0.00 0.00 34.59 2.29
5626 7806 4.099573 ACTCCCTCTGTACCGAAATACATG 59.900 45.833 0.00 0.00 34.59 3.21
5627 7807 4.028131 TCCCTCTGTACCGAAATACATGT 58.972 43.478 2.69 2.69 34.59 3.21
5628 7808 4.098960 TCCCTCTGTACCGAAATACATGTC 59.901 45.833 0.00 0.00 34.59 3.06
5629 7809 4.042398 CCTCTGTACCGAAATACATGTCG 58.958 47.826 0.00 0.00 34.59 4.35
5630 7810 3.441163 TCTGTACCGAAATACATGTCGC 58.559 45.455 0.00 0.00 34.59 5.19
5631 7811 3.129813 TCTGTACCGAAATACATGTCGCT 59.870 43.478 0.00 0.00 34.59 4.93
5632 7812 3.183754 TGTACCGAAATACATGTCGCTG 58.816 45.455 0.00 0.00 35.93 5.18
5633 7813 1.651987 ACCGAAATACATGTCGCTGG 58.348 50.000 0.00 1.83 35.93 4.85
5634 7814 1.206132 ACCGAAATACATGTCGCTGGA 59.794 47.619 0.00 0.00 35.93 3.86
5635 7815 1.860950 CCGAAATACATGTCGCTGGAG 59.139 52.381 0.00 0.00 35.93 3.86
5636 7816 2.540515 CGAAATACATGTCGCTGGAGT 58.459 47.619 0.00 0.00 0.00 3.85
5637 7817 3.490249 CCGAAATACATGTCGCTGGAGTA 60.490 47.826 0.00 0.00 35.93 2.59
5638 7818 3.731216 CGAAATACATGTCGCTGGAGTAG 59.269 47.826 0.00 0.00 0.00 2.57
5651 7831 4.792521 CTGGAGTAGCAGTAAGTCAACT 57.207 45.455 0.00 0.00 0.00 3.16
5652 7832 5.899120 CTGGAGTAGCAGTAAGTCAACTA 57.101 43.478 0.00 0.00 0.00 2.24
5653 7833 5.640189 TGGAGTAGCAGTAAGTCAACTAC 57.360 43.478 0.00 0.00 34.71 2.73
5654 7834 5.322754 TGGAGTAGCAGTAAGTCAACTACT 58.677 41.667 0.00 0.00 44.64 2.57
5656 7836 5.900865 AGTAGCAGTAAGTCAACTACTCC 57.099 43.478 0.00 0.00 39.38 3.85
5657 7837 5.322754 AGTAGCAGTAAGTCAACTACTCCA 58.677 41.667 0.00 0.00 39.38 3.86
5658 7838 4.792521 AGCAGTAAGTCAACTACTCCAG 57.207 45.455 0.00 0.00 37.50 3.86
5659 7839 4.153411 AGCAGTAAGTCAACTACTCCAGT 58.847 43.478 0.00 0.00 37.50 4.00
5660 7840 4.021894 AGCAGTAAGTCAACTACTCCAGTG 60.022 45.833 0.00 0.00 37.50 3.66
5661 7841 4.022242 GCAGTAAGTCAACTACTCCAGTGA 60.022 45.833 0.00 0.00 37.50 3.41
5662 7842 5.462405 CAGTAAGTCAACTACTCCAGTGAC 58.538 45.833 0.00 0.00 37.50 3.67
5663 7843 5.009710 CAGTAAGTCAACTACTCCAGTGACA 59.990 44.000 5.54 0.00 37.50 3.58
5664 7844 5.775701 AGTAAGTCAACTACTCCAGTGACAT 59.224 40.000 5.54 0.00 37.50 3.06
5665 7845 4.527509 AGTCAACTACTCCAGTGACATG 57.472 45.455 5.54 0.00 37.63 3.21
5666 7846 3.898123 AGTCAACTACTCCAGTGACATGT 59.102 43.478 0.00 0.00 37.63 3.21
5667 7847 5.077564 AGTCAACTACTCCAGTGACATGTA 58.922 41.667 0.00 0.00 37.63 2.29
5668 7848 5.717178 AGTCAACTACTCCAGTGACATGTAT 59.283 40.000 0.00 0.00 37.63 2.29
5669 7849 6.211584 AGTCAACTACTCCAGTGACATGTATT 59.788 38.462 0.00 0.00 37.63 1.89
5670 7850 6.874134 GTCAACTACTCCAGTGACATGTATTT 59.126 38.462 0.00 0.00 37.63 1.40
5671 7851 7.063544 GTCAACTACTCCAGTGACATGTATTTC 59.936 40.741 0.00 0.00 37.63 2.17
5672 7852 5.651530 ACTACTCCAGTGACATGTATTTCG 58.348 41.667 0.00 0.00 35.62 3.46
5673 7853 3.861840 ACTCCAGTGACATGTATTTCGG 58.138 45.455 0.00 0.00 0.00 4.30
5674 7854 3.260884 ACTCCAGTGACATGTATTTCGGT 59.739 43.478 0.00 0.00 0.00 4.69
5675 7855 4.464951 ACTCCAGTGACATGTATTTCGGTA 59.535 41.667 0.00 0.00 0.00 4.02
5676 7856 4.751060 TCCAGTGACATGTATTTCGGTAC 58.249 43.478 0.00 0.00 0.00 3.34
5677 7857 4.221041 TCCAGTGACATGTATTTCGGTACA 59.779 41.667 0.00 0.00 38.79 2.90
5678 7858 4.566759 CCAGTGACATGTATTTCGGTACAG 59.433 45.833 0.00 0.00 37.93 2.74
5679 7859 5.407502 CAGTGACATGTATTTCGGTACAGA 58.592 41.667 0.00 0.00 37.93 3.41
5680 7860 5.516696 CAGTGACATGTATTTCGGTACAGAG 59.483 44.000 0.00 0.00 37.93 3.35
5681 7861 4.804139 GTGACATGTATTTCGGTACAGAGG 59.196 45.833 0.00 0.00 37.93 3.69
5682 7862 4.142026 TGACATGTATTTCGGTACAGAGGG 60.142 45.833 0.00 0.00 37.93 4.30
5683 7863 4.028131 ACATGTATTTCGGTACAGAGGGA 58.972 43.478 0.00 0.00 37.93 4.20
5684 7864 4.099573 ACATGTATTTCGGTACAGAGGGAG 59.900 45.833 0.00 0.00 37.93 4.30
5685 7865 3.705051 TGTATTTCGGTACAGAGGGAGT 58.295 45.455 0.00 0.00 31.33 3.85
5686 7866 4.858850 TGTATTTCGGTACAGAGGGAGTA 58.141 43.478 0.00 0.00 31.33 2.59
5687 7867 5.452255 TGTATTTCGGTACAGAGGGAGTAT 58.548 41.667 0.00 0.00 31.33 2.12
5688 7868 6.604171 TGTATTTCGGTACAGAGGGAGTATA 58.396 40.000 0.00 0.00 31.33 1.47
5689 7869 6.488006 TGTATTTCGGTACAGAGGGAGTATAC 59.512 42.308 0.00 0.00 31.33 1.47
5690 7870 4.785346 TTCGGTACAGAGGGAGTATACT 57.215 45.455 4.68 4.68 0.00 2.12
5691 7871 4.082665 TCGGTACAGAGGGAGTATACTG 57.917 50.000 10.90 0.00 36.58 2.74
5692 7872 2.553172 CGGTACAGAGGGAGTATACTGC 59.447 54.545 15.55 15.55 34.25 4.40
5693 7873 3.563223 GGTACAGAGGGAGTATACTGCA 58.437 50.000 23.76 1.49 35.89 4.41
5694 7874 3.570550 GGTACAGAGGGAGTATACTGCAG 59.429 52.174 23.76 13.48 35.89 4.41
5695 7875 2.035632 ACAGAGGGAGTATACTGCAGC 58.964 52.381 23.76 15.14 35.89 5.25
5696 7876 2.315176 CAGAGGGAGTATACTGCAGCT 58.685 52.381 23.76 16.91 35.89 4.24
5697 7877 2.697751 CAGAGGGAGTATACTGCAGCTT 59.302 50.000 23.76 3.64 35.89 3.74
5698 7878 3.891977 CAGAGGGAGTATACTGCAGCTTA 59.108 47.826 23.76 2.51 35.89 3.09
5699 7879 3.892588 AGAGGGAGTATACTGCAGCTTAC 59.107 47.826 23.76 15.38 35.89 2.34
5700 7880 3.637229 GAGGGAGTATACTGCAGCTTACA 59.363 47.826 23.76 3.00 35.89 2.41
5701 7881 3.639094 AGGGAGTATACTGCAGCTTACAG 59.361 47.826 23.76 11.21 41.08 2.74
5703 7883 4.141914 GGGAGTATACTGCAGCTTACAGTT 60.142 45.833 23.76 12.82 46.01 3.16
5704 7884 5.420409 GGAGTATACTGCAGCTTACAGTTT 58.580 41.667 21.03 16.36 46.01 2.66
5705 7885 5.875359 GGAGTATACTGCAGCTTACAGTTTT 59.125 40.000 21.03 13.14 46.01 2.43
5706 7886 6.371825 GGAGTATACTGCAGCTTACAGTTTTT 59.628 38.462 21.03 11.20 46.01 1.94
5707 7887 7.365840 AGTATACTGCAGCTTACAGTTTTTC 57.634 36.000 21.03 11.64 46.01 2.29
5708 7888 6.934645 AGTATACTGCAGCTTACAGTTTTTCA 59.065 34.615 21.03 6.51 46.01 2.69
5709 7889 4.558538 ACTGCAGCTTACAGTTTTTCAG 57.441 40.909 15.27 0.00 46.01 3.02
5710 7890 3.316308 ACTGCAGCTTACAGTTTTTCAGG 59.684 43.478 15.27 0.00 46.01 3.86
5711 7891 2.622942 TGCAGCTTACAGTTTTTCAGGG 59.377 45.455 0.00 0.00 0.00 4.45
5712 7892 2.623416 GCAGCTTACAGTTTTTCAGGGT 59.377 45.455 0.00 0.00 0.00 4.34
5713 7893 3.304726 GCAGCTTACAGTTTTTCAGGGTC 60.305 47.826 0.00 0.00 0.00 4.46
5714 7894 3.882888 CAGCTTACAGTTTTTCAGGGTCA 59.117 43.478 0.00 0.00 0.00 4.02
5715 7895 4.338118 CAGCTTACAGTTTTTCAGGGTCAA 59.662 41.667 0.00 0.00 0.00 3.18
5716 7896 4.580580 AGCTTACAGTTTTTCAGGGTCAAG 59.419 41.667 0.00 0.00 0.00 3.02
5717 7897 4.338400 GCTTACAGTTTTTCAGGGTCAAGT 59.662 41.667 0.00 0.00 0.00 3.16
5718 7898 5.505819 GCTTACAGTTTTTCAGGGTCAAGTC 60.506 44.000 0.00 0.00 0.00 3.01
5719 7899 4.236527 ACAGTTTTTCAGGGTCAAGTCT 57.763 40.909 0.00 0.00 0.00 3.24
5720 7900 4.200092 ACAGTTTTTCAGGGTCAAGTCTC 58.800 43.478 0.00 0.00 0.00 3.36
5721 7901 4.080299 ACAGTTTTTCAGGGTCAAGTCTCT 60.080 41.667 0.00 0.00 0.00 3.10
5722 7902 4.274459 CAGTTTTTCAGGGTCAAGTCTCTG 59.726 45.833 0.00 0.00 0.00 3.35
5723 7903 4.164221 AGTTTTTCAGGGTCAAGTCTCTGA 59.836 41.667 0.00 0.00 34.84 3.27
5724 7904 3.753294 TTTCAGGGTCAAGTCTCTGAC 57.247 47.619 0.00 6.62 44.21 3.51
5725 7905 2.381752 TCAGGGTCAAGTCTCTGACA 57.618 50.000 13.60 0.00 46.31 3.58
5726 7906 2.677914 TCAGGGTCAAGTCTCTGACAA 58.322 47.619 13.60 0.00 46.31 3.18
5727 7907 3.038280 TCAGGGTCAAGTCTCTGACAAA 58.962 45.455 13.60 0.00 46.31 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 5.925509 TCTTTTGCTCCTATGGTACCATAC 58.074 41.667 27.50 18.85 37.82 2.39
4 5 6.763715 ATCTTTTGCTCCTATGGTACCATA 57.236 37.500 28.79 28.79 37.82 2.74
5 6 5.653255 ATCTTTTGCTCCTATGGTACCAT 57.347 39.130 29.68 29.68 40.19 3.55
6 7 5.450818 AATCTTTTGCTCCTATGGTACCA 57.549 39.130 18.99 18.99 0.00 3.25
7 8 6.564328 CAAAATCTTTTGCTCCTATGGTACC 58.436 40.000 4.43 4.43 40.76 3.34
21 22 8.914011 AGCCTACACTAGAAAACAAAATCTTTT 58.086 29.630 0.00 0.00 0.00 2.27
22 23 8.465273 AGCCTACACTAGAAAACAAAATCTTT 57.535 30.769 0.00 0.00 0.00 2.52
23 24 7.175119 GGAGCCTACACTAGAAAACAAAATCTT 59.825 37.037 0.00 0.00 0.00 2.40
24 25 6.655425 GGAGCCTACACTAGAAAACAAAATCT 59.345 38.462 0.00 0.00 0.00 2.40
25 26 6.430000 TGGAGCCTACACTAGAAAACAAAATC 59.570 38.462 0.00 0.00 0.00 2.17
26 27 6.303839 TGGAGCCTACACTAGAAAACAAAAT 58.696 36.000 0.00 0.00 0.00 1.82
27 28 5.686753 TGGAGCCTACACTAGAAAACAAAA 58.313 37.500 0.00 0.00 0.00 2.44
28 29 5.298989 TGGAGCCTACACTAGAAAACAAA 57.701 39.130 0.00 0.00 0.00 2.83
29 30 4.967084 TGGAGCCTACACTAGAAAACAA 57.033 40.909 0.00 0.00 0.00 2.83
30 31 4.967084 TTGGAGCCTACACTAGAAAACA 57.033 40.909 0.00 0.00 0.00 2.83
31 32 5.938125 TCAATTGGAGCCTACACTAGAAAAC 59.062 40.000 5.42 0.00 0.00 2.43
32 33 6.121776 TCAATTGGAGCCTACACTAGAAAA 57.878 37.500 5.42 0.00 0.00 2.29
33 34 5.338381 CCTCAATTGGAGCCTACACTAGAAA 60.338 44.000 5.42 0.00 42.62 2.52
34 35 4.162320 CCTCAATTGGAGCCTACACTAGAA 59.838 45.833 5.42 0.00 42.62 2.10
35 36 3.706594 CCTCAATTGGAGCCTACACTAGA 59.293 47.826 5.42 0.00 42.62 2.43
36 37 3.706594 TCCTCAATTGGAGCCTACACTAG 59.293 47.826 5.42 0.00 42.62 2.57
37 38 3.719871 TCCTCAATTGGAGCCTACACTA 58.280 45.455 5.42 0.00 42.62 2.74
38 39 2.551270 TCCTCAATTGGAGCCTACACT 58.449 47.619 5.42 0.00 42.62 3.55
39 40 3.209410 CATCCTCAATTGGAGCCTACAC 58.791 50.000 5.42 0.00 42.62 2.90
40 41 2.421952 GCATCCTCAATTGGAGCCTACA 60.422 50.000 5.42 0.00 42.62 2.74
41 42 2.225467 GCATCCTCAATTGGAGCCTAC 58.775 52.381 5.42 0.00 42.62 3.18
42 43 1.845791 TGCATCCTCAATTGGAGCCTA 59.154 47.619 5.42 0.00 42.62 3.93
43 44 0.627451 TGCATCCTCAATTGGAGCCT 59.373 50.000 5.42 0.00 42.62 4.58
44 45 1.135721 GTTGCATCCTCAATTGGAGCC 59.864 52.381 5.42 0.00 42.62 4.70
45 46 2.097825 AGTTGCATCCTCAATTGGAGC 58.902 47.619 5.42 3.87 42.62 4.70
46 47 3.760151 TCAAGTTGCATCCTCAATTGGAG 59.240 43.478 5.42 1.99 43.65 3.86
47 48 3.760151 CTCAAGTTGCATCCTCAATTGGA 59.240 43.478 5.42 0.00 40.82 3.53
48 49 3.119245 CCTCAAGTTGCATCCTCAATTGG 60.119 47.826 5.42 0.00 0.00 3.16
49 50 3.760151 TCCTCAAGTTGCATCCTCAATTG 59.240 43.478 0.00 0.00 0.00 2.32
50 51 4.038271 TCCTCAAGTTGCATCCTCAATT 57.962 40.909 0.00 0.00 0.00 2.32
51 52 3.726557 TCCTCAAGTTGCATCCTCAAT 57.273 42.857 0.00 0.00 0.00 2.57
52 53 3.726557 ATCCTCAAGTTGCATCCTCAA 57.273 42.857 0.00 0.00 0.00 3.02
53 54 3.726557 AATCCTCAAGTTGCATCCTCA 57.273 42.857 0.00 0.00 0.00 3.86
54 55 4.219288 ACAAAATCCTCAAGTTGCATCCTC 59.781 41.667 0.00 0.00 0.00 3.71
55 56 4.154942 ACAAAATCCTCAAGTTGCATCCT 58.845 39.130 0.00 0.00 0.00 3.24
56 57 4.022068 TGACAAAATCCTCAAGTTGCATCC 60.022 41.667 0.00 0.00 0.00 3.51
57 58 5.048504 TCTGACAAAATCCTCAAGTTGCATC 60.049 40.000 0.00 0.00 0.00 3.91
58 59 4.828939 TCTGACAAAATCCTCAAGTTGCAT 59.171 37.500 0.00 0.00 0.00 3.96
59 60 4.206375 TCTGACAAAATCCTCAAGTTGCA 58.794 39.130 0.00 0.00 0.00 4.08
60 61 4.836125 TCTGACAAAATCCTCAAGTTGC 57.164 40.909 0.00 0.00 0.00 4.17
61 62 7.205297 ACATTTCTGACAAAATCCTCAAGTTG 58.795 34.615 0.00 0.00 0.00 3.16
62 63 7.352079 ACATTTCTGACAAAATCCTCAAGTT 57.648 32.000 0.00 0.00 0.00 2.66
63 64 6.966534 ACATTTCTGACAAAATCCTCAAGT 57.033 33.333 0.00 0.00 0.00 3.16
64 65 7.362401 CCCTACATTTCTGACAAAATCCTCAAG 60.362 40.741 0.00 0.00 0.00 3.02
65 66 6.434028 CCCTACATTTCTGACAAAATCCTCAA 59.566 38.462 0.00 0.00 0.00 3.02
66 67 5.945784 CCCTACATTTCTGACAAAATCCTCA 59.054 40.000 0.00 0.00 0.00 3.86
67 68 5.358160 CCCCTACATTTCTGACAAAATCCTC 59.642 44.000 0.00 0.00 0.00 3.71
68 69 5.222337 ACCCCTACATTTCTGACAAAATCCT 60.222 40.000 0.00 0.00 0.00 3.24
69 70 5.016831 ACCCCTACATTTCTGACAAAATCC 58.983 41.667 0.00 0.00 0.00 3.01
70 71 5.710099 TCACCCCTACATTTCTGACAAAATC 59.290 40.000 0.00 0.00 0.00 2.17
71 72 5.640147 TCACCCCTACATTTCTGACAAAAT 58.360 37.500 0.00 0.00 0.00 1.82
72 73 5.055265 TCACCCCTACATTTCTGACAAAA 57.945 39.130 0.00 0.00 0.00 2.44
73 74 4.715534 TCACCCCTACATTTCTGACAAA 57.284 40.909 0.00 0.00 0.00 2.83
74 75 4.042809 ACATCACCCCTACATTTCTGACAA 59.957 41.667 0.00 0.00 0.00 3.18
84 85 2.225675 TGGGAGTAACATCACCCCTACA 60.226 50.000 0.00 0.00 41.44 2.74
85 86 2.474112 TGGGAGTAACATCACCCCTAC 58.526 52.381 0.00 0.00 41.44 3.18
87 88 1.916181 CTTGGGAGTAACATCACCCCT 59.084 52.381 0.00 0.00 41.44 4.79
93 94 2.359900 CACAGGCTTGGGAGTAACATC 58.640 52.381 0.00 0.00 0.00 3.06
95 96 0.400213 CCACAGGCTTGGGAGTAACA 59.600 55.000 0.00 0.00 32.35 2.41
189 659 8.240883 ACAGAATAGAATAGTTCACACGTTTC 57.759 34.615 0.00 0.00 0.00 2.78
194 664 9.419297 TGTACAACAGAATAGAATAGTTCACAC 57.581 33.333 0.00 0.00 0.00 3.82
250 721 4.766404 AAAAGGACAATAACTTCAGGCG 57.234 40.909 0.00 0.00 0.00 5.52
251 722 6.332735 AGAAAAAGGACAATAACTTCAGGC 57.667 37.500 0.00 0.00 0.00 4.85
312 787 5.688814 TCACATTCTCAGGATGTCAGAAT 57.311 39.130 0.00 0.00 37.35 2.40
316 791 6.950842 AGTATTTCACATTCTCAGGATGTCA 58.049 36.000 0.00 0.00 37.40 3.58
323 798 8.467402 AACGAACTAGTATTTCACATTCTCAG 57.533 34.615 0.00 0.00 0.00 3.35
324 799 8.304596 AGAACGAACTAGTATTTCACATTCTCA 58.695 33.333 0.00 0.00 0.00 3.27
325 800 8.690680 AGAACGAACTAGTATTTCACATTCTC 57.309 34.615 0.00 0.00 0.00 2.87
326 801 9.141400 GAAGAACGAACTAGTATTTCACATTCT 57.859 33.333 0.00 0.00 0.00 2.40
327 802 9.141400 AGAAGAACGAACTAGTATTTCACATTC 57.859 33.333 0.00 0.71 0.00 2.67
328 803 9.141400 GAGAAGAACGAACTAGTATTTCACATT 57.859 33.333 0.00 0.00 0.00 2.71
393 868 6.480320 AGTGTTACAGAAAAGCAGAACTAGTG 59.520 38.462 0.00 0.00 0.00 2.74
421 1131 6.927294 ATAGTTCTGCTGGTAACTTTATGC 57.073 37.500 3.55 0.00 37.19 3.14
478 1194 9.796120 CAACAACTTCAGGTAACATTTTCTAAA 57.204 29.630 0.00 0.00 41.41 1.85
547 1287 2.806244 ACCGGATGTCAGAAAAAGTTCG 59.194 45.455 9.46 0.00 38.90 3.95
554 1294 5.160607 AGTATTTCACCGGATGTCAGAAA 57.839 39.130 9.46 8.76 33.33 2.52
559 1299 5.657474 TGAACTAGTATTTCACCGGATGTC 58.343 41.667 9.46 0.00 0.00 3.06
586 1326 5.205565 GTTCGCAAAGTCCTTTACTGAAAG 58.794 41.667 0.00 0.00 41.61 2.62
592 1332 2.350484 GCAGGTTCGCAAAGTCCTTTAC 60.350 50.000 0.00 0.00 0.00 2.01
597 1337 2.626780 GGGCAGGTTCGCAAAGTCC 61.627 63.158 0.00 0.00 0.00 3.85
606 1346 0.033920 CCAAAAAGCAGGGCAGGTTC 59.966 55.000 0.00 0.00 0.00 3.62
630 1370 6.702449 ATAATAGTAACCATGATGGCAGGA 57.298 37.500 12.25 0.00 42.67 3.86
659 1401 3.744987 ACGAATTCAAGACTACGTCTCG 58.255 45.455 6.22 0.00 42.59 4.04
692 1434 7.710907 TGGAAAGCAGACAGTACAATGTATATC 59.289 37.037 0.00 0.00 32.25 1.63
698 1440 4.673580 GCATGGAAAGCAGACAGTACAATG 60.674 45.833 0.00 0.00 0.00 2.82
803 1547 1.203052 CGTTGTAGGGAAGCCGACTAA 59.797 52.381 0.00 0.00 0.00 2.24
822 1566 9.619727 CGTAAATAACAGATAATTGTGAAGTCG 57.380 33.333 0.00 0.00 0.00 4.18
828 1572 7.639850 CCTGCACGTAAATAACAGATAATTGTG 59.360 37.037 0.00 0.00 0.00 3.33
832 1576 6.821665 ACACCTGCACGTAAATAACAGATAAT 59.178 34.615 0.00 0.00 0.00 1.28
847 1591 2.609459 GGATATCTCAAACACCTGCACG 59.391 50.000 2.05 0.00 0.00 5.34
910 1654 6.179756 TCACAACTGCCATGATAGTATTGTT 58.820 36.000 0.00 0.00 0.00 2.83
1065 1809 1.350684 TCTTGTGCAGAACCATGGCTA 59.649 47.619 13.04 0.00 0.00 3.93
1269 2013 5.388654 ACTTCTCCATTTCTTGTCACCAAT 58.611 37.500 0.00 0.00 0.00 3.16
1434 2178 2.934553 GGTATAAAGCTCACCGGTTGTC 59.065 50.000 2.97 0.00 32.77 3.18
1440 2184 1.202651 CCCCAGGTATAAAGCTCACCG 60.203 57.143 0.00 0.00 37.42 4.94
1443 2187 3.414759 TCTCCCCAGGTATAAAGCTCA 57.585 47.619 0.00 0.00 0.00 4.26
1461 2205 4.074970 GTCCAACATTGTGAGTTCCATCT 58.925 43.478 0.00 0.00 0.00 2.90
1569 2313 0.327924 CTGTATGCCAGGTCCCACAA 59.672 55.000 0.00 0.00 37.54 3.33
1572 2316 2.998097 GCTGTATGCCAGGTCCCA 59.002 61.111 0.00 0.00 41.81 4.37
1596 2340 1.259609 ACAGTTGGCCCATTGATGTG 58.740 50.000 6.31 0.00 0.00 3.21
1602 2346 0.188342 AGGTGAACAGTTGGCCCATT 59.812 50.000 0.00 0.00 0.00 3.16
1629 2373 1.816224 CCTAACACCCCAAATGAACCG 59.184 52.381 0.00 0.00 0.00 4.44
1710 2454 2.645411 GCATGCAACTGCGATTGTC 58.355 52.632 14.21 0.00 45.83 3.18
1782 2526 1.374758 CTTCCCAGCAGACACGGTC 60.375 63.158 0.00 0.00 0.00 4.79
1911 2655 0.692476 TAAGACTGTGGCCACATGCT 59.308 50.000 37.66 31.15 41.01 3.79
1932 2676 2.810400 GCCAGAAGTTGTCAAGCCTACA 60.810 50.000 0.00 0.00 0.00 2.74
2043 2787 4.248859 CGATCTGGAGAACATGTTCACTT 58.751 43.478 33.92 18.17 41.84 3.16
2049 2793 2.027745 ACAAGCGATCTGGAGAACATGT 60.028 45.455 0.00 0.00 0.00 3.21
2073 2817 1.530323 AAACCGCAACATGGTAGGAC 58.470 50.000 11.01 0.00 39.29 3.85
2109 2853 1.684450 CCTTTGCCCCACGTAAAAACT 59.316 47.619 0.00 0.00 0.00 2.66
2118 2862 1.106285 CATTAGCTCCTTTGCCCCAC 58.894 55.000 0.00 0.00 0.00 4.61
2421 3165 3.018973 TCACAAACGCGGTGAAGC 58.981 55.556 17.62 0.00 41.96 3.86
2471 3215 6.149474 TGCAAGGTCTTTCTTATTAGCTGAAC 59.851 38.462 0.00 0.00 0.00 3.18
2531 3281 9.170890 TGTCCATATTACTAGAAAGGATGGATT 57.829 33.333 15.87 0.00 42.37 3.01
2687 3437 1.966451 GGAACCGCTGGTCTGTTGG 60.966 63.158 0.69 0.00 33.12 3.77
2829 3579 2.570415 TATCGGTGGCACTTTTGGAA 57.430 45.000 18.45 0.00 0.00 3.53
2832 3582 3.181497 CCAGATTATCGGTGGCACTTTTG 60.181 47.826 18.45 5.54 0.00 2.44
2926 3676 2.531522 ACACCCAAGCAAATTTCTGC 57.468 45.000 0.00 0.00 42.97 4.26
2927 3677 4.057406 TCAACACCCAAGCAAATTTCTG 57.943 40.909 0.00 0.00 0.00 3.02
2947 3708 4.725556 TTTCTTGCGACACACAGTAATC 57.274 40.909 0.00 0.00 0.00 1.75
2950 3711 5.986741 TCTAAATTTCTTGCGACACACAGTA 59.013 36.000 0.00 0.00 0.00 2.74
2952 3713 5.050091 ACTCTAAATTTCTTGCGACACACAG 60.050 40.000 0.00 0.00 0.00 3.66
2953 3714 4.814234 ACTCTAAATTTCTTGCGACACACA 59.186 37.500 0.00 0.00 0.00 3.72
2954 3715 5.344207 ACTCTAAATTTCTTGCGACACAC 57.656 39.130 0.00 0.00 0.00 3.82
2955 3716 6.220930 AGTACTCTAAATTTCTTGCGACACA 58.779 36.000 0.00 0.00 0.00 3.72
2956 3717 6.183360 GGAGTACTCTAAATTTCTTGCGACAC 60.183 42.308 21.88 0.00 0.00 3.67
2957 3718 5.867716 GGAGTACTCTAAATTTCTTGCGACA 59.132 40.000 21.88 0.00 0.00 4.35
2958 3719 6.100668 AGGAGTACTCTAAATTTCTTGCGAC 58.899 40.000 21.88 0.09 0.00 5.19
2959 3720 6.282199 AGGAGTACTCTAAATTTCTTGCGA 57.718 37.500 21.88 0.00 0.00 5.10
2975 3744 7.578310 TGTCAACCTACACATATAGGAGTAC 57.422 40.000 5.84 0.00 44.12 2.73
2980 3749 4.345257 AGGCTGTCAACCTACACATATAGG 59.655 45.833 0.00 0.00 46.41 2.57
2983 3752 3.774766 TCAGGCTGTCAACCTACACATAT 59.225 43.478 15.27 0.00 35.10 1.78
2984 3753 3.169908 TCAGGCTGTCAACCTACACATA 58.830 45.455 15.27 0.00 35.10 2.29
2985 3754 1.977854 TCAGGCTGTCAACCTACACAT 59.022 47.619 15.27 0.00 35.10 3.21
3013 3788 5.008911 CAGTTCAAGTTCATGATGGTCACAA 59.991 40.000 0.00 0.00 0.00 3.33
3094 3869 3.665745 TCCTTTGCAGCTTTGGATTTC 57.334 42.857 0.00 0.00 0.00 2.17
3133 3908 4.281688 ACAGCATTGAAAATTACCTGTGCT 59.718 37.500 0.00 0.00 41.88 4.40
3160 3935 4.521146 AGAGCATGATACAAACCAAGAGG 58.479 43.478 0.00 0.00 42.21 3.69
3179 3954 4.363999 GACGATCAGTTGGTCCAATAGAG 58.636 47.826 7.77 1.52 0.00 2.43
3181 3956 3.116300 CGACGATCAGTTGGTCCAATAG 58.884 50.000 7.77 3.78 0.00 1.73
3188 3963 0.865769 GTTTGCGACGATCAGTTGGT 59.134 50.000 0.00 0.00 34.75 3.67
3199 3974 3.115554 GGAATGCATTATGGTTTGCGAC 58.884 45.455 12.97 0.00 41.80 5.19
3200 3975 2.757314 TGGAATGCATTATGGTTTGCGA 59.243 40.909 12.97 0.00 41.80 5.10
3203 3978 8.528917 CATCTATTGGAATGCATTATGGTTTG 57.471 34.615 12.97 4.19 0.00 2.93
3369 4146 3.018856 CAATGAGCTATCACAAGGCCAA 58.981 45.455 5.01 0.00 38.57 4.52
3694 4475 2.638855 ACCCCGTTTGGAACATGTACTA 59.361 45.455 0.00 0.00 39.30 1.82
3714 4495 1.138883 TAGCGACATGTGGCTCGAC 59.861 57.895 34.56 13.21 43.58 4.20
3728 4510 4.480541 CATTCATGCTAGAGTAGGTAGCG 58.519 47.826 0.00 0.00 45.05 4.26
3809 4591 0.248215 CTCCATTTGAATGCGGCGAC 60.248 55.000 12.98 2.02 35.08 5.19
3815 4597 5.587388 TTGAGATTCCTCCATTTGAATGC 57.413 39.130 0.00 0.00 38.66 3.56
3932 4715 0.107703 TATTGCTGTGGGCTCTTCGG 60.108 55.000 0.00 0.00 42.39 4.30
4028 4811 1.618861 CTCGAGGTTTGTAGCTGTCG 58.381 55.000 3.91 0.00 30.79 4.35
4032 4815 1.968493 TGTTCCTCGAGGTTTGTAGCT 59.032 47.619 30.17 0.00 36.34 3.32
4192 4980 9.474920 CAAATTTGGTAGAAGAAAGCAAACATA 57.525 29.630 10.49 0.00 44.37 2.29
4231 5019 6.707440 ATTCCATGAGTTGTTTGTGTGTAA 57.293 33.333 0.00 0.00 0.00 2.41
4232 5020 7.994425 ATATTCCATGAGTTGTTTGTGTGTA 57.006 32.000 0.00 0.00 0.00 2.90
4236 5024 8.245491 TCATCAATATTCCATGAGTTGTTTGTG 58.755 33.333 0.00 0.00 0.00 3.33
4254 5042 6.016860 GTCCACTAGCATTGCAATCATCAATA 60.017 38.462 9.53 0.00 33.27 1.90
4322 5126 2.423185 ACATATGAACGTGTGGCCAATG 59.577 45.455 7.24 6.89 0.00 2.82
4333 5137 8.909708 AATTACAATTTGGTCACATATGAACG 57.090 30.769 10.38 0.00 46.50 3.95
4387 6018 4.855340 ACTGATAGTGTTAAATGGTGGGG 58.145 43.478 0.00 0.00 0.00 4.96
4443 6075 6.582295 ACGCACTGAAGCAAAAGTAATAATTG 59.418 34.615 0.00 0.00 0.00 2.32
4474 6109 6.230472 AGTGCAGAATGTATAACACAACTCA 58.770 36.000 0.00 0.00 41.55 3.41
4496 6132 3.766591 AGTCAGTGTAGCAGAAGCATAGT 59.233 43.478 0.00 0.00 45.49 2.12
4552 6192 6.315642 AGAGATGCACAAGATGTCAATGTAAG 59.684 38.462 0.00 0.00 0.00 2.34
4567 6207 5.300034 ACAAGAAATGTTTCAGAGATGCACA 59.700 36.000 8.09 0.00 40.06 4.57
4568 6208 5.766222 ACAAGAAATGTTTCAGAGATGCAC 58.234 37.500 8.09 0.00 40.06 4.57
4643 6283 1.134226 CGTACACTTTCTCGCGGTTT 58.866 50.000 6.13 0.00 0.00 3.27
4792 6433 8.924691 GTTTTGCTAATAATTTGCTGATGTTGA 58.075 29.630 0.00 0.00 0.00 3.18
4798 6439 6.867816 CCACAGTTTTGCTAATAATTTGCTGA 59.132 34.615 0.00 0.00 0.00 4.26
4810 6451 5.825679 AGTTTGTATGACCACAGTTTTGCTA 59.174 36.000 0.00 0.00 0.00 3.49
4812 6453 4.739716 CAGTTTGTATGACCACAGTTTTGC 59.260 41.667 0.00 0.00 0.00 3.68
4831 6472 4.021925 GCGGTCTCCAGCCCAGTT 62.022 66.667 0.00 0.00 0.00 3.16
4851 6492 1.534336 TTGCAGTGGCCATCGCAATT 61.534 50.000 30.35 2.67 39.32 2.32
4854 6495 1.534336 AAATTGCAGTGGCCATCGCA 61.534 50.000 23.79 23.79 40.13 5.10
4860 6501 3.119495 AGACGATAAAAATTGCAGTGGCC 60.119 43.478 0.00 0.00 40.13 5.36
4889 6530 7.773149 ACTTATCATCCTATCGGTATTACAGC 58.227 38.462 0.00 0.00 0.00 4.40
4898 6539 8.338259 CAAAAACTTGACTTATCATCCTATCGG 58.662 37.037 0.00 0.00 33.85 4.18
4899 6540 8.338259 CCAAAAACTTGACTTATCATCCTATCG 58.662 37.037 0.00 0.00 33.85 2.92
4939 6580 1.522355 CATGCTACACCCTCAGGCG 60.522 63.158 0.00 0.00 36.11 5.52
4948 6589 1.452108 GACAGGGCCCATGCTACAC 60.452 63.158 27.56 2.16 37.74 2.90
5016 6661 5.928839 GGCTAGTGTGATCTATAACATGGTG 59.071 44.000 0.00 0.00 0.00 4.17
5190 6855 9.774742 CTAGAATGACTTTAAAATTAGTGTGGC 57.225 33.333 0.00 0.00 0.00 5.01
5258 6923 8.555361 GGAATGCTAAAGATAACATTGAGAGAC 58.445 37.037 0.00 0.00 30.03 3.36
5260 6925 8.442632 TGGAATGCTAAAGATAACATTGAGAG 57.557 34.615 0.00 0.00 30.03 3.20
5328 6993 3.181442 ACCAGACTCGCTATAGCCTAAGA 60.181 47.826 19.00 9.25 37.91 2.10
5424 7092 5.243060 GGTTAAGCTGGCCTCTTTCTAAAAA 59.757 40.000 14.45 1.78 0.00 1.94
5425 7093 4.765339 GGTTAAGCTGGCCTCTTTCTAAAA 59.235 41.667 14.45 2.37 0.00 1.52
5427 7095 3.587506 AGGTTAAGCTGGCCTCTTTCTAA 59.412 43.478 14.45 2.98 0.00 2.10
5428 7096 3.182152 AGGTTAAGCTGGCCTCTTTCTA 58.818 45.455 14.45 0.00 0.00 2.10
5429 7097 1.988846 AGGTTAAGCTGGCCTCTTTCT 59.011 47.619 14.45 8.57 0.00 2.52
5430 7098 2.498644 AGGTTAAGCTGGCCTCTTTC 57.501 50.000 14.45 9.26 0.00 2.62
5431 7099 2.980246 AAGGTTAAGCTGGCCTCTTT 57.020 45.000 8.16 4.18 0.00 2.52
5434 7102 2.498644 AGAAAGGTTAAGCTGGCCTC 57.501 50.000 8.16 3.44 0.00 4.70
5435 7103 2.980246 AAGAAAGGTTAAGCTGGCCT 57.020 45.000 8.16 3.16 0.00 5.19
5436 7104 3.157881 AGAAAGAAAGGTTAAGCTGGCC 58.842 45.455 8.16 0.00 0.00 5.36
5437 7105 4.855715 AAGAAAGAAAGGTTAAGCTGGC 57.144 40.909 8.16 3.52 0.00 4.85
5438 7106 6.641169 AGAAAGAAAGAAAGGTTAAGCTGG 57.359 37.500 8.16 0.00 0.00 4.85
5439 7107 9.057089 TCTAAGAAAGAAAGAAAGGTTAAGCTG 57.943 33.333 8.16 0.00 0.00 4.24
5440 7108 9.628500 TTCTAAGAAAGAAAGAAAGGTTAAGCT 57.372 29.630 0.12 0.12 41.35 3.74
5475 7655 6.465439 AACAAATTATCGGATTTTCCCCTC 57.535 37.500 0.00 0.00 31.13 4.30
5476 7656 6.867519 AAACAAATTATCGGATTTTCCCCT 57.132 33.333 0.00 0.00 31.13 4.79
5477 7657 6.315144 CCAAAACAAATTATCGGATTTTCCCC 59.685 38.462 0.00 0.00 31.13 4.81
5478 7658 7.100409 TCCAAAACAAATTATCGGATTTTCCC 58.900 34.615 0.00 0.00 31.13 3.97
5479 7659 7.201522 GCTCCAAAACAAATTATCGGATTTTCC 60.202 37.037 0.00 0.00 0.00 3.13
5480 7660 7.545615 AGCTCCAAAACAAATTATCGGATTTTC 59.454 33.333 0.00 0.00 0.00 2.29
5481 7661 7.386059 AGCTCCAAAACAAATTATCGGATTTT 58.614 30.769 0.00 0.00 0.00 1.82
5482 7662 6.935167 AGCTCCAAAACAAATTATCGGATTT 58.065 32.000 0.00 0.00 0.00 2.17
5483 7663 6.152661 TGAGCTCCAAAACAAATTATCGGATT 59.847 34.615 12.15 0.00 0.00 3.01
5484 7664 5.652014 TGAGCTCCAAAACAAATTATCGGAT 59.348 36.000 12.15 0.00 0.00 4.18
5485 7665 5.007034 TGAGCTCCAAAACAAATTATCGGA 58.993 37.500 12.15 0.00 0.00 4.55
5486 7666 5.309323 TGAGCTCCAAAACAAATTATCGG 57.691 39.130 12.15 0.00 0.00 4.18
5487 7667 5.287035 GCTTGAGCTCCAAAACAAATTATCG 59.713 40.000 12.15 0.00 38.21 2.92
5488 7668 6.638168 GCTTGAGCTCCAAAACAAATTATC 57.362 37.500 12.15 0.00 38.21 1.75
5551 7731 9.877178 TTTCCTAAAAGTTTAAGCATTGAAACA 57.123 25.926 0.00 0.00 37.89 2.83
5577 7757 8.974060 ACATCCGTATTATACTGTGGATTTTT 57.026 30.769 7.31 0.00 34.09 1.94
5578 7758 9.485206 GTACATCCGTATTATACTGTGGATTTT 57.515 33.333 7.31 2.64 34.09 1.82
5579 7759 8.867097 AGTACATCCGTATTATACTGTGGATTT 58.133 33.333 7.31 5.20 34.09 2.17
5580 7760 8.418597 AGTACATCCGTATTATACTGTGGATT 57.581 34.615 7.31 4.07 34.09 3.01
5581 7761 7.122353 GGAGTACATCCGTATTATACTGTGGAT 59.878 40.741 0.00 5.57 38.67 3.41
5582 7762 6.432162 GGAGTACATCCGTATTATACTGTGGA 59.568 42.308 0.00 3.74 38.67 4.02
5583 7763 6.618811 GGAGTACATCCGTATTATACTGTGG 58.381 44.000 0.00 0.00 38.67 4.17
5598 7778 2.928334 TCGGTACAGAGGGAGTACATC 58.072 52.381 0.00 0.00 42.73 3.06
5599 7779 3.377253 TTCGGTACAGAGGGAGTACAT 57.623 47.619 0.00 0.00 42.73 2.29
5600 7780 2.885135 TTCGGTACAGAGGGAGTACA 57.115 50.000 0.00 0.00 42.73 2.90
5601 7781 4.641989 TGTATTTCGGTACAGAGGGAGTAC 59.358 45.833 0.00 0.00 40.78 2.73
5602 7782 4.858850 TGTATTTCGGTACAGAGGGAGTA 58.141 43.478 0.00 0.00 31.33 2.59
5603 7783 3.705051 TGTATTTCGGTACAGAGGGAGT 58.295 45.455 0.00 0.00 31.33 3.85
5604 7784 4.099573 ACATGTATTTCGGTACAGAGGGAG 59.900 45.833 0.00 0.00 37.93 4.30
5605 7785 4.028131 ACATGTATTTCGGTACAGAGGGA 58.972 43.478 0.00 0.00 37.93 4.20
5606 7786 4.369182 GACATGTATTTCGGTACAGAGGG 58.631 47.826 0.00 0.00 37.93 4.30
5607 7787 4.042398 CGACATGTATTTCGGTACAGAGG 58.958 47.826 0.00 0.00 37.93 3.69
5608 7788 3.486108 GCGACATGTATTTCGGTACAGAG 59.514 47.826 0.00 0.00 37.93 3.35
5609 7789 3.129813 AGCGACATGTATTTCGGTACAGA 59.870 43.478 7.49 0.00 43.71 3.41
5610 7790 3.242944 CAGCGACATGTATTTCGGTACAG 59.757 47.826 8.74 0.00 43.70 2.74
5611 7791 3.183754 CAGCGACATGTATTTCGGTACA 58.816 45.455 8.74 0.00 43.70 2.90
5612 7792 2.538449 CCAGCGACATGTATTTCGGTAC 59.462 50.000 8.74 0.00 43.70 3.34
5613 7793 2.427812 TCCAGCGACATGTATTTCGGTA 59.572 45.455 8.74 0.00 43.70 4.02
5614 7794 1.206132 TCCAGCGACATGTATTTCGGT 59.794 47.619 0.00 0.07 46.29 4.69
5615 7795 1.860950 CTCCAGCGACATGTATTTCGG 59.139 52.381 0.00 0.00 35.73 4.30
5616 7796 2.540515 ACTCCAGCGACATGTATTTCG 58.459 47.619 0.00 0.00 38.31 3.46
5617 7797 3.491267 GCTACTCCAGCGACATGTATTTC 59.509 47.826 0.00 0.00 41.37 2.17
5618 7798 3.458189 GCTACTCCAGCGACATGTATTT 58.542 45.455 0.00 0.00 41.37 1.40
5619 7799 3.099267 GCTACTCCAGCGACATGTATT 57.901 47.619 0.00 0.00 41.37 1.89
5620 7800 2.802787 GCTACTCCAGCGACATGTAT 57.197 50.000 0.00 0.00 41.37 2.29
5629 7809 8.016694 AGTAGTTGACTTACTGCTACTCCAGC 62.017 46.154 0.00 0.00 43.10 4.85
5630 7810 4.792521 AGTTGACTTACTGCTACTCCAG 57.207 45.455 0.00 0.00 38.78 3.86
5631 7811 5.322754 AGTAGTTGACTTACTGCTACTCCA 58.677 41.667 0.00 0.00 38.99 3.86
5632 7812 5.882553 GAGTAGTTGACTTACTGCTACTCC 58.117 45.833 15.27 2.85 46.14 3.85
5634 7814 5.322754 TGGAGTAGTTGACTTACTGCTACT 58.677 41.667 5.83 0.00 40.96 2.57
5635 7815 5.183522 ACTGGAGTAGTTGACTTACTGCTAC 59.816 44.000 5.70 0.00 40.53 3.58
5636 7816 5.183331 CACTGGAGTAGTTGACTTACTGCTA 59.817 44.000 5.70 0.00 40.53 3.49
5637 7817 4.021894 CACTGGAGTAGTTGACTTACTGCT 60.022 45.833 5.70 0.00 42.68 4.24
5638 7818 4.022242 TCACTGGAGTAGTTGACTTACTGC 60.022 45.833 0.00 0.00 39.06 4.40
5639 7819 5.009710 TGTCACTGGAGTAGTTGACTTACTG 59.990 44.000 0.00 0.00 39.06 2.74
5640 7820 5.138276 TGTCACTGGAGTAGTTGACTTACT 58.862 41.667 0.00 0.00 39.06 2.24
5641 7821 5.449107 TGTCACTGGAGTAGTTGACTTAC 57.551 43.478 0.00 0.00 39.06 2.34
5642 7822 5.538813 ACATGTCACTGGAGTAGTTGACTTA 59.461 40.000 0.00 0.00 39.06 2.24
5643 7823 4.345257 ACATGTCACTGGAGTAGTTGACTT 59.655 41.667 0.00 0.00 39.06 3.01
5644 7824 3.898123 ACATGTCACTGGAGTAGTTGACT 59.102 43.478 0.00 0.00 42.90 3.41
5645 7825 4.258702 ACATGTCACTGGAGTAGTTGAC 57.741 45.455 0.00 0.00 37.60 3.18
5646 7826 6.605471 AATACATGTCACTGGAGTAGTTGA 57.395 37.500 0.00 0.00 37.60 3.18
5647 7827 6.035005 CGAAATACATGTCACTGGAGTAGTTG 59.965 42.308 0.00 0.00 37.60 3.16
5648 7828 6.100004 CGAAATACATGTCACTGGAGTAGTT 58.900 40.000 0.00 0.00 37.60 2.24
5649 7829 5.394224 CCGAAATACATGTCACTGGAGTAGT 60.394 44.000 0.00 0.00 41.36 2.73
5650 7830 5.043903 CCGAAATACATGTCACTGGAGTAG 58.956 45.833 0.00 0.00 0.00 2.57
5651 7831 4.464951 ACCGAAATACATGTCACTGGAGTA 59.535 41.667 0.00 0.00 0.00 2.59
5652 7832 3.260884 ACCGAAATACATGTCACTGGAGT 59.739 43.478 0.00 0.00 0.00 3.85
5653 7833 3.861840 ACCGAAATACATGTCACTGGAG 58.138 45.455 0.00 0.00 0.00 3.86
5654 7834 3.973206 ACCGAAATACATGTCACTGGA 57.027 42.857 0.00 0.00 0.00 3.86
5655 7835 4.500127 TGTACCGAAATACATGTCACTGG 58.500 43.478 0.00 1.83 29.97 4.00
5656 7836 5.407502 TCTGTACCGAAATACATGTCACTG 58.592 41.667 0.00 0.00 34.59 3.66
5657 7837 5.394224 CCTCTGTACCGAAATACATGTCACT 60.394 44.000 0.00 0.00 34.59 3.41
5658 7838 4.804139 CCTCTGTACCGAAATACATGTCAC 59.196 45.833 0.00 0.00 34.59 3.67
5659 7839 4.142026 CCCTCTGTACCGAAATACATGTCA 60.142 45.833 0.00 0.00 34.59 3.58
5660 7840 4.098960 TCCCTCTGTACCGAAATACATGTC 59.901 45.833 0.00 0.00 34.59 3.06
5661 7841 4.028131 TCCCTCTGTACCGAAATACATGT 58.972 43.478 2.69 2.69 34.59 3.21
5662 7842 4.099573 ACTCCCTCTGTACCGAAATACATG 59.900 45.833 0.00 0.00 34.59 3.21
5663 7843 4.287552 ACTCCCTCTGTACCGAAATACAT 58.712 43.478 0.00 0.00 34.59 2.29
5664 7844 3.705051 ACTCCCTCTGTACCGAAATACA 58.295 45.455 0.00 0.00 33.96 2.29
5665 7845 6.714356 AGTATACTCCCTCTGTACCGAAATAC 59.286 42.308 0.00 0.00 0.00 1.89
5666 7846 6.713903 CAGTATACTCCCTCTGTACCGAAATA 59.286 42.308 1.26 0.00 0.00 1.40
5667 7847 5.535406 CAGTATACTCCCTCTGTACCGAAAT 59.465 44.000 1.26 0.00 0.00 2.17
5668 7848 4.885907 CAGTATACTCCCTCTGTACCGAAA 59.114 45.833 1.26 0.00 0.00 3.46
5669 7849 4.458397 CAGTATACTCCCTCTGTACCGAA 58.542 47.826 1.26 0.00 0.00 4.30
5670 7850 3.746751 GCAGTATACTCCCTCTGTACCGA 60.747 52.174 1.26 0.00 0.00 4.69
5671 7851 2.553172 GCAGTATACTCCCTCTGTACCG 59.447 54.545 1.26 0.00 0.00 4.02
5672 7852 3.563223 TGCAGTATACTCCCTCTGTACC 58.437 50.000 1.26 0.00 0.00 3.34
5673 7853 3.004944 GCTGCAGTATACTCCCTCTGTAC 59.995 52.174 16.64 0.00 0.00 2.90
5674 7854 3.117474 AGCTGCAGTATACTCCCTCTGTA 60.117 47.826 16.64 0.00 0.00 2.74
5675 7855 2.035632 GCTGCAGTATACTCCCTCTGT 58.964 52.381 16.64 0.00 0.00 3.41
5676 7856 2.315176 AGCTGCAGTATACTCCCTCTG 58.685 52.381 16.64 0.00 0.00 3.35
5677 7857 2.765689 AGCTGCAGTATACTCCCTCT 57.234 50.000 16.64 0.00 0.00 3.69
5678 7858 3.637229 TGTAAGCTGCAGTATACTCCCTC 59.363 47.826 22.88 3.34 0.00 4.30
5679 7859 3.639094 CTGTAAGCTGCAGTATACTCCCT 59.361 47.826 22.88 6.52 0.00 4.20
5680 7860 3.385111 ACTGTAAGCTGCAGTATACTCCC 59.615 47.826 22.88 0.00 44.41 4.30
5681 7861 4.657436 ACTGTAAGCTGCAGTATACTCC 57.343 45.455 22.88 0.00 44.41 3.85
5682 7862 6.969828 AAAACTGTAAGCTGCAGTATACTC 57.030 37.500 20.20 5.81 45.36 2.59
5683 7863 6.934645 TGAAAAACTGTAAGCTGCAGTATACT 59.065 34.615 20.20 0.00 45.36 2.12
5684 7864 7.129109 TGAAAAACTGTAAGCTGCAGTATAC 57.871 36.000 20.20 17.80 45.36 1.47
5685 7865 6.371548 CCTGAAAAACTGTAAGCTGCAGTATA 59.628 38.462 20.20 6.04 45.36 1.47
5686 7866 5.182001 CCTGAAAAACTGTAAGCTGCAGTAT 59.818 40.000 20.20 7.11 45.36 2.12
5687 7867 4.515191 CCTGAAAAACTGTAAGCTGCAGTA 59.485 41.667 20.20 0.00 45.36 2.74
5689 7869 3.304928 CCCTGAAAAACTGTAAGCTGCAG 60.305 47.826 10.11 10.11 37.60 4.41
5690 7870 2.622942 CCCTGAAAAACTGTAAGCTGCA 59.377 45.455 1.02 0.00 37.60 4.41
5691 7871 2.623416 ACCCTGAAAAACTGTAAGCTGC 59.377 45.455 0.00 0.00 37.60 5.25
5692 7872 3.882888 TGACCCTGAAAAACTGTAAGCTG 59.117 43.478 0.00 0.00 37.60 4.24
5693 7873 4.164843 TGACCCTGAAAAACTGTAAGCT 57.835 40.909 0.00 0.00 37.60 3.74
5694 7874 4.338400 ACTTGACCCTGAAAAACTGTAAGC 59.662 41.667 0.00 0.00 37.60 3.09
5695 7875 5.823045 AGACTTGACCCTGAAAAACTGTAAG 59.177 40.000 0.00 0.00 42.29 2.34
5696 7876 5.751586 AGACTTGACCCTGAAAAACTGTAA 58.248 37.500 0.00 0.00 0.00 2.41
5697 7877 5.130477 AGAGACTTGACCCTGAAAAACTGTA 59.870 40.000 0.00 0.00 0.00 2.74
5698 7878 4.080299 AGAGACTTGACCCTGAAAAACTGT 60.080 41.667 0.00 0.00 0.00 3.55
5699 7879 4.274459 CAGAGACTTGACCCTGAAAAACTG 59.726 45.833 0.00 0.00 0.00 3.16
5700 7880 4.164221 TCAGAGACTTGACCCTGAAAAACT 59.836 41.667 0.00 0.00 33.26 2.66
5701 7881 4.273724 GTCAGAGACTTGACCCTGAAAAAC 59.726 45.833 0.00 0.00 41.24 2.43
5702 7882 4.080582 TGTCAGAGACTTGACCCTGAAAAA 60.081 41.667 12.35 0.00 45.40 1.94
5703 7883 3.454447 TGTCAGAGACTTGACCCTGAAAA 59.546 43.478 12.35 0.00 45.40 2.29
5704 7884 3.038280 TGTCAGAGACTTGACCCTGAAA 58.962 45.455 12.35 0.00 45.40 2.69
5705 7885 2.677914 TGTCAGAGACTTGACCCTGAA 58.322 47.619 12.35 0.00 45.40 3.02
5706 7886 2.381752 TGTCAGAGACTTGACCCTGA 57.618 50.000 12.35 0.00 45.40 3.86
5707 7887 3.475566 TTTGTCAGAGACTTGACCCTG 57.524 47.619 12.35 0.00 45.40 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.