Multiple sequence alignment - TraesCS1A01G018500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G018500 chr1A 100.000 4676 0 0 1 4676 9552796 9548121 0.000000e+00 8636.0
1 TraesCS1A01G018500 chr1A 87.002 1608 183 20 2031 3626 9356909 9355316 0.000000e+00 1788.0
2 TraesCS1A01G018500 chr1A 86.907 1054 102 20 796 1830 9358214 9357178 0.000000e+00 1149.0
3 TraesCS1A01G018500 chr1A 96.552 58 2 0 604 661 9359046 9358989 3.850000e-16 97.1
4 TraesCS1A01G018500 chr1B 92.958 1974 111 12 2418 4371 10080915 10078950 0.000000e+00 2850.0
5 TraesCS1A01G018500 chr1B 92.985 1340 73 9 2418 3741 10068914 10067580 0.000000e+00 1934.0
6 TraesCS1A01G018500 chr1B 93.683 1124 57 7 1 1124 10071702 10070593 0.000000e+00 1670.0
7 TraesCS1A01G018500 chr1B 92.121 1155 90 1 2418 3572 9598387 9599540 0.000000e+00 1628.0
8 TraesCS1A01G018500 chr1B 86.782 1097 109 22 803 1882 9596991 9598068 0.000000e+00 1190.0
9 TraesCS1A01G018500 chr1B 81.285 1058 111 47 3617 4633 10065347 10064336 0.000000e+00 776.0
10 TraesCS1A01G018500 chr1B 86.875 640 64 10 782 1412 10082377 10081749 0.000000e+00 699.0
11 TraesCS1A01G018500 chr1B 86.406 640 67 10 782 1412 10070442 10069814 0.000000e+00 682.0
12 TraesCS1A01G018500 chr1B 87.295 488 39 10 1420 1885 10069752 10069266 1.910000e-148 536.0
13 TraesCS1A01G018500 chr1B 87.056 479 48 7 1420 1885 10081711 10081234 3.200000e-146 529.0
14 TraesCS1A01G018500 chr1B 80.854 679 73 35 3699 4369 10019421 10018792 9.100000e-132 481.0
15 TraesCS1A01G018500 chr1B 82.206 562 55 24 3693 4248 9599689 9600211 4.290000e-120 442.0
16 TraesCS1A01G018500 chr1B 81.520 487 56 16 3899 4369 9693778 9694246 2.060000e-98 370.0
17 TraesCS1A01G018500 chr1B 86.667 195 18 5 3656 3844 9435972 9436164 4.740000e-50 209.0
18 TraesCS1A01G018500 chr1B 82.028 217 39 0 2104 2320 9598112 9598328 7.990000e-43 185.0
19 TraesCS1A01G018500 chr1B 86.429 140 18 1 3624 3762 10066531 10066392 8.100000e-33 152.0
20 TraesCS1A01G018500 chr1B 78.182 220 45 2 2104 2320 10081193 10080974 2.270000e-28 137.0
21 TraesCS1A01G018500 chr1B 85.577 104 15 0 2104 2207 10069225 10069122 4.950000e-20 110.0
22 TraesCS1A01G018500 chr1D 89.943 1571 138 18 2418 3979 7898002 7896443 0.000000e+00 2008.0
23 TraesCS1A01G018500 chr1D 90.687 1514 115 7 2418 3909 7875666 7874157 0.000000e+00 1991.0
24 TraesCS1A01G018500 chr1D 87.091 1557 184 7 2035 3576 7210344 7211898 0.000000e+00 1746.0
25 TraesCS1A01G018500 chr1D 85.647 1693 205 22 2025 3694 7352600 7354277 0.000000e+00 1746.0
26 TraesCS1A01G018500 chr1D 87.487 983 85 26 934 1885 7876996 7876021 0.000000e+00 1099.0
27 TraesCS1A01G018500 chr1D 86.157 968 103 16 934 1885 7899270 7898318 0.000000e+00 1016.0
28 TraesCS1A01G018500 chr1D 85.565 859 92 18 1013 1854 7209248 7210091 0.000000e+00 870.0
29 TraesCS1A01G018500 chr1D 82.424 825 119 18 1005 1820 7351442 7352249 0.000000e+00 697.0
30 TraesCS1A01G018500 chr1D 83.734 541 58 19 798 1326 7207936 7208458 7.030000e-133 484.0
31 TraesCS1A01G018500 chr1D 84.865 370 43 8 3584 3945 7378610 7378974 1.240000e-95 361.0
32 TraesCS1A01G018500 chr1D 78.802 217 46 0 2104 2320 7898277 7898061 3.770000e-31 147.0
33 TraesCS1A01G018500 chr1D 85.577 104 15 0 2104 2207 7875980 7875877 4.950000e-20 110.0
34 TraesCS1A01G018500 chr1D 97.674 43 1 0 4458 4500 7843569 7843527 1.800000e-09 75.0
35 TraesCS1A01G018500 chr3D 81.357 1105 195 10 2432 3532 4967403 4966306 0.000000e+00 889.0
36 TraesCS1A01G018500 chr3D 78.107 169 33 4 2059 2224 4967823 4967656 2.300000e-18 104.0
37 TraesCS1A01G018500 chrUn 78.788 165 31 4 2063 2224 238784292 238784455 1.780000e-19 108.0
38 TraesCS1A01G018500 chrUn 78.788 165 31 4 2063 2224 240351982 240351819 1.780000e-19 108.0
39 TraesCS1A01G018500 chr4B 97.872 47 0 1 337 383 168987429 168987384 3.880000e-11 80.5
40 TraesCS1A01G018500 chr7D 95.833 48 1 1 337 383 605753193 605753146 5.020000e-10 76.8
41 TraesCS1A01G018500 chr6D 95.745 47 1 1 338 384 44090947 44090992 1.800000e-09 75.0
42 TraesCS1A01G018500 chr6A 95.745 47 1 1 337 383 58811522 58811567 1.800000e-09 75.0
43 TraesCS1A01G018500 chr5D 95.652 46 2 0 341 386 217445463 217445508 1.800000e-09 75.0
44 TraesCS1A01G018500 chr3B 93.878 49 2 1 337 385 38805290 38805243 6.490000e-09 73.1
45 TraesCS1A01G018500 chr2D 95.652 46 1 1 337 382 14742391 14742435 6.490000e-09 73.1
46 TraesCS1A01G018500 chr2A 93.750 48 2 1 337 383 61477507 61477554 2.330000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G018500 chr1A 9548121 9552796 4675 True 8636.000000 8636 100.000000 1 4676 1 chr1A.!!$R1 4675
1 TraesCS1A01G018500 chr1A 9355316 9359046 3730 True 1011.366667 1788 90.153667 604 3626 3 chr1A.!!$R2 3022
2 TraesCS1A01G018500 chr1B 10078950 10082377 3427 True 1053.750000 2850 86.267750 782 4371 4 chr1B.!!$R3 3589
3 TraesCS1A01G018500 chr1B 9596991 9600211 3220 False 861.250000 1628 85.784250 803 4248 4 chr1B.!!$F3 3445
4 TraesCS1A01G018500 chr1B 10064336 10071702 7366 True 837.142857 1934 87.665714 1 4633 7 chr1B.!!$R2 4632
5 TraesCS1A01G018500 chr1B 10018792 10019421 629 True 481.000000 481 80.854000 3699 4369 1 chr1B.!!$R1 670
6 TraesCS1A01G018500 chr1D 7351442 7354277 2835 False 1221.500000 1746 84.035500 1005 3694 2 chr1D.!!$F3 2689
7 TraesCS1A01G018500 chr1D 7874157 7876996 2839 True 1066.666667 1991 87.917000 934 3909 3 chr1D.!!$R2 2975
8 TraesCS1A01G018500 chr1D 7896443 7899270 2827 True 1057.000000 2008 84.967333 934 3979 3 chr1D.!!$R3 3045
9 TraesCS1A01G018500 chr1D 7207936 7211898 3962 False 1033.333333 1746 85.463333 798 3576 3 chr1D.!!$F2 2778
10 TraesCS1A01G018500 chr3D 4966306 4967823 1517 True 496.500000 889 79.732000 2059 3532 2 chr3D.!!$R1 1473

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
311 312 0.033208 GCCATGGATCCCACCTTCAA 60.033 55.0 18.40 0.0 35.80 2.69 F
751 752 0.533531 CAGCTGTCAGCCTGTCACAA 60.534 55.0 21.32 0.0 43.77 3.33 F
2016 4114 0.034767 CATCACTGGTCTGGCCACAT 60.035 55.0 0.00 0.0 43.61 3.21 F
2023 4279 0.251341 GGTCTGGCCACATCACCTTT 60.251 55.0 0.00 0.0 37.17 3.11 F
2027 4283 0.392336 TGGCCACATCACCTTTTTGC 59.608 50.0 0.00 0.0 0.00 3.68 F
2463 4896 0.395586 TGCAGGTTCTTGTTGGCACT 60.396 50.0 0.00 0.0 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2004 4102 0.251341 AAAGGTGATGTGGCCAGACC 60.251 55.000 5.11 10.56 39.84 3.85 R
2731 5164 0.174845 CGATGGTGGAAACCTCGCTA 59.825 55.000 0.00 0.00 0.00 4.26 R
2884 5317 0.756294 TCTCGTTGAGCTTGTCCCAA 59.244 50.000 0.00 0.00 0.00 4.12 R
2927 5360 1.553704 CCCCTGGTGTAGGTAGTTGAC 59.446 57.143 0.00 0.00 45.80 3.18 R
3300 5736 2.416901 TGCATGTCAGCAGCAACAA 58.583 47.368 4.88 0.00 40.11 2.83 R
4453 9386 0.654683 GCAATAGCAGCTTCAGGACG 59.345 55.000 0.00 0.00 41.58 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 74 2.731968 GCTGTCACCATTATGCAAACCG 60.732 50.000 0.00 0.00 0.00 4.44
148 149 9.994432 GATTTGTATAAAGAGACAAGAACATGG 57.006 33.333 0.00 0.00 38.01 3.66
179 180 3.516586 TCAGTTGGTAAGGTGATCCTCA 58.483 45.455 0.00 0.00 44.35 3.86
181 182 2.840651 AGTTGGTAAGGTGATCCTCAGG 59.159 50.000 0.00 0.00 44.35 3.86
190 191 3.781770 GATCCTCAGGAGTGCGGCG 62.782 68.421 0.51 0.51 34.05 6.46
231 232 6.014925 TGAGTTGTATCAGTAGCAAGGTTACA 60.015 38.462 0.00 0.00 0.00 2.41
247 248 7.596494 CAAGGTTACAATTCACATCAACAGAT 58.404 34.615 0.00 0.00 0.00 2.90
311 312 0.033208 GCCATGGATCCCACCTTCAA 60.033 55.000 18.40 0.00 35.80 2.69
329 330 2.816958 CACCAGTAGCAGCTGCCG 60.817 66.667 34.39 19.90 43.38 5.69
415 416 6.065976 TCCACTGTGGAATCATGTTCTTAT 57.934 37.500 26.54 0.00 45.00 1.73
433 434 9.211485 TGTTCTTATTACTTTGGTTACTACAGC 57.789 33.333 0.00 0.00 0.00 4.40
451 452 3.191371 ACAGCGGAATTGATTCTGTTTCC 59.809 43.478 12.70 0.00 43.44 3.13
476 477 2.949644 CCTGGATTTCGGTATTTGGTCC 59.050 50.000 0.00 0.00 0.00 4.46
479 480 2.949644 GGATTTCGGTATTTGGTCCCTG 59.050 50.000 0.00 0.00 0.00 4.45
505 506 3.508840 GGCCACGGCGGAATTGAG 61.509 66.667 13.24 0.00 43.06 3.02
515 516 3.611530 CGGCGGAATTGAGTTTGTTTCAT 60.612 43.478 0.00 0.00 0.00 2.57
597 598 4.166888 GCCAGCGCCTGAGGATGA 62.167 66.667 0.65 0.00 32.44 2.92
647 648 1.141053 ACTTGGTTCAGTCCACTGTCC 59.859 52.381 6.61 10.53 44.12 4.02
665 666 0.620556 CCAGTCTATTGGCAGTGGGT 59.379 55.000 0.00 0.00 0.00 4.51
670 671 3.010584 AGTCTATTGGCAGTGGGTTGAAT 59.989 43.478 0.00 0.00 0.00 2.57
711 712 0.886490 GCCACAGGTTCAGTCCACTG 60.886 60.000 0.00 0.00 45.08 3.66
741 742 0.829333 AGTCTATGGGCAGCTGTCAG 59.171 55.000 21.89 9.35 0.00 3.51
742 743 0.813210 GTCTATGGGCAGCTGTCAGC 60.813 60.000 21.89 17.48 42.84 4.26
748 749 2.031616 GCAGCTGTCAGCCTGTCA 59.968 61.111 21.32 0.00 43.77 3.58
751 752 0.533531 CAGCTGTCAGCCTGTCACAA 60.534 55.000 21.32 0.00 43.77 3.33
765 766 5.392380 GCCTGTCACAATGTGGAAAATCTAG 60.392 44.000 13.95 1.39 33.87 2.43
772 773 6.150976 CACAATGTGGAAAATCTAGCCTACAA 59.849 38.462 5.29 0.00 0.00 2.41
775 776 3.063588 GTGGAAAATCTAGCCTACAACGC 59.936 47.826 0.00 0.00 0.00 4.84
776 777 2.284417 GGAAAATCTAGCCTACAACGCG 59.716 50.000 3.53 3.53 0.00 6.01
833 834 1.968310 AGACTGGGTCGTCTTCTGC 59.032 57.895 0.00 0.00 41.27 4.26
840 841 1.682394 GGGTCGTCTTCTGCTCCTAGA 60.682 57.143 0.00 0.00 0.00 2.43
878 1780 1.904144 TCTTCCTATTTCGCACGTCG 58.096 50.000 0.00 0.00 40.15 5.12
897 1799 6.474427 CACGTCGTGTATATACCAATGAAGTT 59.526 38.462 17.30 0.00 0.00 2.66
917 1819 9.832445 TGAAGTTATAATCAGTATCCCAAGTTC 57.168 33.333 0.00 0.00 0.00 3.01
918 1820 9.274206 GAAGTTATAATCAGTATCCCAAGTTCC 57.726 37.037 0.00 0.00 0.00 3.62
919 1821 7.746703 AGTTATAATCAGTATCCCAAGTTCCC 58.253 38.462 0.00 0.00 0.00 3.97
920 1822 7.349859 AGTTATAATCAGTATCCCAAGTTCCCA 59.650 37.037 0.00 0.00 0.00 4.37
921 1823 4.510167 AATCAGTATCCCAAGTTCCCAG 57.490 45.455 0.00 0.00 0.00 4.45
943 1845 7.121168 CCCAGCCACACTATTAATTGGTATATG 59.879 40.741 5.92 1.72 0.00 1.78
970 1872 6.887002 AGCTGGATATGATCAACTAGTCGATA 59.113 38.462 0.00 0.00 0.00 2.92
994 1896 1.609783 CCCTTGCCCTCCTTGGTAG 59.390 63.158 0.00 0.00 0.00 3.18
1077 2307 2.101917 CCCTGGTGCATTTCATCATTCC 59.898 50.000 0.00 0.00 34.82 3.01
1353 3296 2.277008 ACTTCTGGGTCATGGATCCT 57.723 50.000 14.23 0.00 33.22 3.24
1382 3325 2.663075 CCAGTAGCAGCTGCCCTCA 61.663 63.158 34.39 15.09 43.38 3.86
1412 3403 3.438781 TGGAATCATGTTCCTTACGTTGC 59.561 43.478 20.58 0.00 39.31 4.17
1414 3405 4.437390 GGAATCATGTTCCTTACGTTGCAG 60.437 45.833 15.67 0.00 35.73 4.41
1427 3442 1.393539 CGTTGCAGACTACGGAATTGG 59.606 52.381 0.67 0.00 40.63 3.16
1591 3606 2.928116 GTCTGGGTGTCTAATTACGCAC 59.072 50.000 6.25 6.25 36.08 5.34
1749 3773 6.015434 GGTTTACTGTCAAATTTCCTGTGGAT 60.015 38.462 0.00 0.00 0.00 3.41
1757 3784 0.896923 TTTCCTGTGGATGCCAATGC 59.103 50.000 0.00 0.00 34.18 3.56
1796 3835 5.530915 TCTTTAGGACCATCAATTTATGCCG 59.469 40.000 0.00 0.00 0.00 5.69
1839 3878 3.887621 CCGAGTGGTTCTTATTCCTCA 57.112 47.619 0.00 0.00 0.00 3.86
1841 3880 3.056107 CCGAGTGGTTCTTATTCCTCACA 60.056 47.826 0.00 0.00 0.00 3.58
1843 3882 4.994852 CGAGTGGTTCTTATTCCTCACAAA 59.005 41.667 0.00 0.00 0.00 2.83
1865 3921 9.025041 ACAAATTTAGTTTCTTTCCTCCCTATG 57.975 33.333 0.00 0.00 0.00 2.23
1867 3923 8.809468 AATTTAGTTTCTTTCCTCCCTATGTC 57.191 34.615 0.00 0.00 0.00 3.06
1871 3927 7.569599 AGTTTCTTTCCTCCCTATGTCTTTA 57.430 36.000 0.00 0.00 0.00 1.85
1872 3928 7.625469 AGTTTCTTTCCTCCCTATGTCTTTAG 58.375 38.462 0.00 0.00 0.00 1.85
1885 3941 8.206867 CCCTATGTCTTTAGAGAATTGACATGA 58.793 37.037 14.65 2.14 44.72 3.07
1886 3942 9.039870 CCTATGTCTTTAGAGAATTGACATGAC 57.960 37.037 14.65 0.00 44.72 3.06
1887 3943 7.856145 ATGTCTTTAGAGAATTGACATGACC 57.144 36.000 0.00 0.00 43.82 4.02
1890 3985 7.099764 GTCTTTAGAGAATTGACATGACCTCA 58.900 38.462 0.00 0.00 32.66 3.86
1894 3989 6.814506 AGAGAATTGACATGACCTCAAAAG 57.185 37.500 0.00 0.00 31.48 2.27
1925 4020 8.658840 ATTATATTGTACAAAACACTGGGGTT 57.341 30.769 13.23 0.00 38.00 4.11
1926 4021 4.929819 ATTGTACAAAACACTGGGGTTC 57.070 40.909 13.23 0.00 38.00 3.62
1927 4022 3.367646 TGTACAAAACACTGGGGTTCA 57.632 42.857 0.00 0.00 31.43 3.18
1942 4039 3.356290 GGGTTCAGTTTCCTATGCACAT 58.644 45.455 0.00 0.00 0.00 3.21
1944 4041 4.947388 GGGTTCAGTTTCCTATGCACATAA 59.053 41.667 0.00 0.00 0.00 1.90
1952 4049 3.213506 TCCTATGCACATAACACCATGC 58.786 45.455 0.00 0.00 38.59 4.06
1957 4054 3.847542 TGCACATAACACCATGCAATTC 58.152 40.909 0.00 0.00 44.72 2.17
1958 4055 3.257624 TGCACATAACACCATGCAATTCA 59.742 39.130 0.00 0.00 44.72 2.57
1962 4059 6.534436 GCACATAACACCATGCAATTCAATTA 59.466 34.615 0.00 0.00 38.00 1.40
1963 4060 7.225145 GCACATAACACCATGCAATTCAATTAT 59.775 33.333 0.00 0.00 38.00 1.28
1973 4071 7.115805 CCATGCAATTCAATTATGTATGCACTC 59.884 37.037 0.00 0.00 40.43 3.51
1976 4074 6.639686 GCAATTCAATTATGTATGCACTCTGG 59.360 38.462 0.00 0.00 33.68 3.86
1977 4075 7.469043 GCAATTCAATTATGTATGCACTCTGGA 60.469 37.037 0.00 0.00 33.68 3.86
1981 4079 7.436933 TCAATTATGTATGCACTCTGGACTAG 58.563 38.462 0.00 0.00 0.00 2.57
1989 4087 4.632153 TGCACTCTGGACTAGTTTCTTTC 58.368 43.478 0.00 0.00 0.00 2.62
1990 4088 3.997681 GCACTCTGGACTAGTTTCTTTCC 59.002 47.826 0.00 0.00 0.00 3.13
1991 4089 4.262678 GCACTCTGGACTAGTTTCTTTCCT 60.263 45.833 0.00 0.00 0.00 3.36
1992 4090 5.047235 GCACTCTGGACTAGTTTCTTTCCTA 60.047 44.000 0.00 0.00 0.00 2.94
1994 4092 7.038659 CACTCTGGACTAGTTTCTTTCCTATG 58.961 42.308 0.00 0.00 0.00 2.23
1999 4097 6.116126 GGACTAGTTTCTTTCCTATGCACAT 58.884 40.000 0.00 0.00 0.00 3.21
2003 4101 5.564550 AGTTTCTTTCCTATGCACATCACT 58.435 37.500 0.00 0.00 0.00 3.41
2004 4102 5.413833 AGTTTCTTTCCTATGCACATCACTG 59.586 40.000 0.00 0.00 0.00 3.66
2007 4105 2.988010 TCCTATGCACATCACTGGTC 57.012 50.000 0.00 0.00 0.00 4.02
2012 4110 2.042831 GCACATCACTGGTCTGGCC 61.043 63.158 0.00 0.00 37.90 5.36
2013 4111 1.376086 CACATCACTGGTCTGGCCA 59.624 57.895 4.71 4.71 46.95 5.36
2015 4113 1.376086 CATCACTGGTCTGGCCACA 59.624 57.895 0.00 0.00 43.61 4.17
2016 4114 0.034767 CATCACTGGTCTGGCCACAT 60.035 55.000 0.00 0.00 43.61 3.21
2020 4265 1.377725 CTGGTCTGGCCACATCACC 60.378 63.158 0.00 6.39 43.61 4.02
2021 4266 1.845627 CTGGTCTGGCCACATCACCT 61.846 60.000 0.00 0.00 43.61 4.00
2023 4279 0.251341 GGTCTGGCCACATCACCTTT 60.251 55.000 0.00 0.00 37.17 3.11
2027 4283 0.392336 TGGCCACATCACCTTTTTGC 59.608 50.000 0.00 0.00 0.00 3.68
2029 4285 1.337167 GGCCACATCACCTTTTTGCTC 60.337 52.381 0.00 0.00 0.00 4.26
2033 4289 2.034939 CACATCACCTTTTTGCTCTGCA 59.965 45.455 0.00 0.00 36.47 4.41
2040 4296 3.118665 ACCTTTTTGCTCTGCACAAATGT 60.119 39.130 4.66 5.60 37.53 2.71
2065 4321 8.402623 TGATCAAATCAGTTGTGCAAGTGCAT 62.403 38.462 9.56 6.80 43.23 3.96
2086 4343 7.012421 GTGCATTTTACCCTATCTAAGAAGTGG 59.988 40.741 0.00 0.00 0.00 4.00
2090 4347 7.578458 TTTACCCTATCTAAGAAGTGGGTTT 57.422 36.000 12.19 0.00 44.68 3.27
2097 4354 5.228945 TCTAAGAAGTGGGTTTCCTTCTG 57.771 43.478 2.93 0.00 45.01 3.02
2101 4358 4.401925 AGAAGTGGGTTTCCTTCTGAATG 58.598 43.478 1.37 0.00 44.29 2.67
2120 4378 8.243426 TCTGAATGCATTTCTTTACAATGGTAC 58.757 33.333 14.33 0.00 35.23 3.34
2121 4379 7.890515 TGAATGCATTTCTTTACAATGGTACA 58.109 30.769 14.33 0.00 37.84 2.90
2237 4534 8.050778 TGTGTGACTTATAAATCCAACAATCC 57.949 34.615 0.00 0.00 0.00 3.01
2253 4583 6.882140 CCAACAATCCCTACTATACAACACAA 59.118 38.462 0.00 0.00 0.00 3.33
2256 4586 7.857456 ACAATCCCTACTATACAACACAATCA 58.143 34.615 0.00 0.00 0.00 2.57
2257 4587 8.325787 ACAATCCCTACTATACAACACAATCAA 58.674 33.333 0.00 0.00 0.00 2.57
2334 4666 6.270096 GGTACGTGACTATTACATGCTTTC 57.730 41.667 0.00 0.00 0.00 2.62
2341 4673 7.277981 CGTGACTATTACATGCTTTCTACCTTT 59.722 37.037 0.00 0.00 0.00 3.11
2342 4674 8.947115 GTGACTATTACATGCTTTCTACCTTTT 58.053 33.333 0.00 0.00 0.00 2.27
2350 4685 7.649057 ACATGCTTTCTACCTTTTAGTTTGTC 58.351 34.615 0.00 0.00 0.00 3.18
2352 4687 7.259290 TGCTTTCTACCTTTTAGTTTGTCTG 57.741 36.000 0.00 0.00 0.00 3.51
2357 4692 6.530120 TCTACCTTTTAGTTTGTCTGCATGA 58.470 36.000 0.00 0.00 0.00 3.07
2360 4695 6.681777 ACCTTTTAGTTTGTCTGCATGATTC 58.318 36.000 0.00 0.00 0.00 2.52
2361 4696 6.265196 ACCTTTTAGTTTGTCTGCATGATTCA 59.735 34.615 0.00 0.00 0.00 2.57
2365 4700 9.545105 TTTTAGTTTGTCTGCATGATTCAAATT 57.455 25.926 0.00 2.18 32.16 1.82
2463 4896 0.395586 TGCAGGTTCTTGTTGGCACT 60.396 50.000 0.00 0.00 0.00 4.40
2563 4996 3.534554 GATTCAACAAATGATTGGCCCC 58.465 45.455 0.00 0.00 41.01 5.80
2565 4998 2.549082 TCAACAAATGATTGGCCCCAT 58.451 42.857 0.00 0.00 41.01 4.00
2680 5113 2.376518 ACTTCCAGGTGATGTCCATGTT 59.623 45.455 0.00 0.00 0.00 2.71
2683 5116 1.615116 CCAGGTGATGTCCATGTTGCT 60.615 52.381 0.00 0.00 0.00 3.91
2731 5164 6.600882 AACTGCAATGGAGAAGATTTCATT 57.399 33.333 9.20 0.00 0.00 2.57
2740 5173 5.119694 GGAGAAGATTTCATTAGCGAGGTT 58.880 41.667 0.00 0.00 0.00 3.50
2765 5198 1.995066 ATCGGCAGGATCCACCACA 60.995 57.895 20.46 9.12 42.04 4.17
2868 5301 5.080337 TCTGGACAAGTACATCTTCTCTGT 58.920 41.667 0.00 0.00 33.63 3.41
3109 5542 1.135024 GGAACCGTCGGTTACATAGCA 60.135 52.381 30.58 0.00 46.95 3.49
3205 5638 2.285368 ATGGCCGGTGGGAGAAGA 60.285 61.111 1.90 0.00 34.06 2.87
3300 5736 2.315176 AGAAGCAGGCGAGATATCTGT 58.685 47.619 10.74 0.00 0.00 3.41
3403 5839 0.658829 CGACGATGAGCGAGGTCATC 60.659 60.000 26.39 26.39 46.47 2.92
3500 5936 2.094649 GTGGAGGACTCTTACCAGTTCG 60.095 54.545 0.00 0.00 32.89 3.95
3628 8463 5.163764 TGGAGTGATGCGCTTATTTGTAAAG 60.164 40.000 9.73 0.00 0.00 1.85
3631 8466 5.878116 AGTGATGCGCTTATTTGTAAAGGTA 59.122 36.000 9.73 0.00 0.00 3.08
3696 8547 1.285023 CCTTGCTTGCTGTGCAGAC 59.715 57.895 3.02 0.00 40.61 3.51
3736 8591 9.076596 GTTTGAAATCTTACACCATCTATTTGC 57.923 33.333 0.00 0.00 0.00 3.68
3743 8598 4.685169 ACACCATCTATTTGCTTGTTCG 57.315 40.909 0.00 0.00 0.00 3.95
3751 8606 7.491372 CCATCTATTTGCTTGTTCGTTACTCTA 59.509 37.037 0.00 0.00 0.00 2.43
3830 8701 2.503765 TGTGAGAGGTGACAAAAGACCA 59.496 45.455 0.00 0.00 34.36 4.02
3923 8796 8.514594 GTTTATGGATGAAAGATTGTCACTGAA 58.485 33.333 0.00 0.00 0.00 3.02
3931 8804 6.767902 TGAAAGATTGTCACTGAAAAGCTAGT 59.232 34.615 0.00 0.00 24.50 2.57
4006 8880 8.739039 TCTCCAATTTGATCACGAATTTATTGT 58.261 29.630 0.00 0.00 37.84 2.71
4012 8886 6.043327 TGATCACGAATTTATTGTAAGGCG 57.957 37.500 0.00 0.00 0.00 5.52
4142 9026 6.213677 AGTGCGCGAAGACATAGATAAATAA 58.786 36.000 12.10 0.00 0.00 1.40
4146 9030 7.148639 TGCGCGAAGACATAGATAAATAATTCC 60.149 37.037 12.10 0.00 0.00 3.01
4252 9136 3.695830 TCTTCCTTACATGTCGCCTTT 57.304 42.857 0.00 0.00 0.00 3.11
4318 9203 2.343758 CCTGCCGTGCTGTAGTGT 59.656 61.111 0.00 0.00 0.00 3.55
4365 9251 2.629656 GCCGAATGCCACTTGTGCT 61.630 57.895 0.00 0.00 0.00 4.40
4366 9252 1.210931 CCGAATGCCACTTGTGCTG 59.789 57.895 0.00 0.00 0.00 4.41
4367 9253 1.443194 CGAATGCCACTTGTGCTGC 60.443 57.895 0.00 0.00 0.00 5.25
4379 9280 1.007502 GTGCTGCGTGGAAATTGCA 60.008 52.632 0.00 0.00 37.07 4.08
4388 9289 3.187637 GCGTGGAAATTGCAGTAACACTA 59.812 43.478 8.46 0.00 0.00 2.74
4394 9295 6.482641 TGGAAATTGCAGTAACACTAACGTTA 59.517 34.615 7.94 7.94 0.00 3.18
4396 9297 4.977741 TTGCAGTAACACTAACGTTAGC 57.022 40.909 30.47 17.61 32.15 3.09
4399 9300 3.742369 GCAGTAACACTAACGTTAGCCAA 59.258 43.478 30.47 14.03 32.15 4.52
4431 9364 2.700371 TGCAGAAGAGTCTTCTGTTCCA 59.300 45.455 42.14 33.84 45.66 3.53
4433 9366 3.496507 GCAGAAGAGTCTTCTGTTCCAAC 59.503 47.826 42.14 29.41 45.66 3.77
4434 9367 4.697514 CAGAAGAGTCTTCTGTTCCAACA 58.302 43.478 38.31 0.00 42.57 3.33
4439 9372 1.604278 GTCTTCTGTTCCAACACCAGC 59.396 52.381 0.00 0.00 34.70 4.85
4446 9379 4.166662 TGTTCCAACACCAGCAATGCTG 62.167 50.000 26.95 26.95 43.99 4.41
4458 9391 4.815533 AGCAATGCTGATATATCGTCCT 57.184 40.909 7.07 0.00 37.57 3.85
4459 9392 4.502016 AGCAATGCTGATATATCGTCCTG 58.498 43.478 7.07 3.44 37.57 3.86
4460 9393 4.221482 AGCAATGCTGATATATCGTCCTGA 59.779 41.667 7.07 0.00 37.57 3.86
4461 9394 4.931601 GCAATGCTGATATATCGTCCTGAA 59.068 41.667 8.19 0.00 0.00 3.02
4462 9395 5.063186 GCAATGCTGATATATCGTCCTGAAG 59.937 44.000 8.19 0.00 0.00 3.02
4463 9396 4.179926 TGCTGATATATCGTCCTGAAGC 57.820 45.455 8.19 9.52 0.00 3.86
4464 9397 3.829026 TGCTGATATATCGTCCTGAAGCT 59.171 43.478 15.80 0.00 0.00 3.74
4465 9398 4.172505 GCTGATATATCGTCCTGAAGCTG 58.827 47.826 8.19 0.00 0.00 4.24
4466 9399 4.172505 CTGATATATCGTCCTGAAGCTGC 58.827 47.826 8.19 0.00 0.00 5.25
4467 9400 3.829026 TGATATATCGTCCTGAAGCTGCT 59.171 43.478 8.19 0.00 0.00 4.24
4468 9401 5.010282 TGATATATCGTCCTGAAGCTGCTA 58.990 41.667 0.90 0.00 0.00 3.49
4469 9402 5.654209 TGATATATCGTCCTGAAGCTGCTAT 59.346 40.000 0.90 0.00 0.00 2.97
4470 9403 4.881019 ATATCGTCCTGAAGCTGCTATT 57.119 40.909 0.90 0.00 0.00 1.73
4471 9404 2.299993 TCGTCCTGAAGCTGCTATTG 57.700 50.000 0.90 0.00 0.00 1.90
4472 9405 0.654683 CGTCCTGAAGCTGCTATTGC 59.345 55.000 0.90 0.00 40.20 3.56
4473 9406 1.741732 CGTCCTGAAGCTGCTATTGCT 60.742 52.381 0.90 0.00 43.32 3.91
4474 9407 1.669779 GTCCTGAAGCTGCTATTGCTG 59.330 52.381 0.90 0.89 41.03 4.41
4475 9408 1.280133 TCCTGAAGCTGCTATTGCTGT 59.720 47.619 0.90 0.00 41.03 4.40
4476 9409 2.089980 CCTGAAGCTGCTATTGCTGTT 58.910 47.619 0.90 0.00 41.03 3.16
4477 9410 2.159421 CCTGAAGCTGCTATTGCTGTTG 60.159 50.000 0.90 0.00 41.03 3.33
4478 9411 2.486982 CTGAAGCTGCTATTGCTGTTGT 59.513 45.455 0.90 0.00 41.03 3.32
4479 9412 2.485426 TGAAGCTGCTATTGCTGTTGTC 59.515 45.455 0.90 0.00 41.03 3.18
4480 9413 1.457346 AGCTGCTATTGCTGTTGTCC 58.543 50.000 0.00 0.00 39.56 4.02
4481 9414 1.167851 GCTGCTATTGCTGTTGTCCA 58.832 50.000 7.74 0.00 39.81 4.02
4482 9415 1.135575 GCTGCTATTGCTGTTGTCCAC 60.136 52.381 7.74 0.00 39.81 4.02
4483 9416 2.430465 CTGCTATTGCTGTTGTCCACT 58.570 47.619 0.00 0.00 40.48 4.00
4484 9417 2.153645 TGCTATTGCTGTTGTCCACTG 58.846 47.619 0.00 0.00 40.48 3.66
4530 9463 1.815003 CCTTGTCACAATCTGCCTTCC 59.185 52.381 0.00 0.00 0.00 3.46
4557 9490 4.880120 CAGTGCACATGTCATTAGAGGAAT 59.120 41.667 21.04 0.00 0.00 3.01
4559 9492 6.539826 CAGTGCACATGTCATTAGAGGAATAA 59.460 38.462 21.04 0.00 0.00 1.40
4563 9496 8.461222 TGCACATGTCATTAGAGGAATAAAAAG 58.539 33.333 0.00 0.00 0.00 2.27
4566 9499 9.965902 ACATGTCATTAGAGGAATAAAAAGAGT 57.034 29.630 0.00 0.00 0.00 3.24
4634 9572 8.986929 ATTTATTACTCCTAGCTGCAAATTCT 57.013 30.769 1.02 0.00 0.00 2.40
4635 9573 7.792374 TTATTACTCCTAGCTGCAAATTCTG 57.208 36.000 1.02 0.00 0.00 3.02
4636 9574 3.988976 ACTCCTAGCTGCAAATTCTGA 57.011 42.857 1.02 0.00 0.00 3.27
4637 9575 4.500499 ACTCCTAGCTGCAAATTCTGAT 57.500 40.909 1.02 0.00 0.00 2.90
4638 9576 4.450053 ACTCCTAGCTGCAAATTCTGATC 58.550 43.478 1.02 0.00 0.00 2.92
4639 9577 4.080695 ACTCCTAGCTGCAAATTCTGATCA 60.081 41.667 1.02 0.00 0.00 2.92
4640 9578 4.847198 TCCTAGCTGCAAATTCTGATCAA 58.153 39.130 1.02 0.00 0.00 2.57
4641 9579 5.255687 TCCTAGCTGCAAATTCTGATCAAA 58.744 37.500 1.02 0.00 0.00 2.69
4642 9580 5.711506 TCCTAGCTGCAAATTCTGATCAAAA 59.288 36.000 1.02 0.00 0.00 2.44
4643 9581 6.379133 TCCTAGCTGCAAATTCTGATCAAAAT 59.621 34.615 1.02 0.00 0.00 1.82
4644 9582 7.557358 TCCTAGCTGCAAATTCTGATCAAAATA 59.443 33.333 1.02 0.00 0.00 1.40
4645 9583 8.192774 CCTAGCTGCAAATTCTGATCAAAATAA 58.807 33.333 1.02 0.00 0.00 1.40
4646 9584 9.745880 CTAGCTGCAAATTCTGATCAAAATAAT 57.254 29.630 1.02 0.00 0.00 1.28
4648 9586 8.879759 AGCTGCAAATTCTGATCAAAATAATTG 58.120 29.630 1.02 0.00 0.00 2.32
4649 9587 8.662141 GCTGCAAATTCTGATCAAAATAATTGT 58.338 29.630 7.62 0.00 0.00 2.71
4665 9603 9.492973 AAAATAATTGTTTGAATCAGTCCTTGG 57.507 29.630 0.51 0.00 0.00 3.61
4666 9604 8.421249 AATAATTGTTTGAATCAGTCCTTGGA 57.579 30.769 0.00 0.00 0.00 3.53
4667 9605 5.972107 ATTGTTTGAATCAGTCCTTGGAG 57.028 39.130 0.00 0.00 0.00 3.86
4668 9606 3.754965 TGTTTGAATCAGTCCTTGGAGG 58.245 45.455 0.00 0.00 36.46 4.30
4669 9607 3.084786 GTTTGAATCAGTCCTTGGAGGG 58.915 50.000 0.00 0.00 35.59 4.30
4670 9608 2.342406 TGAATCAGTCCTTGGAGGGA 57.658 50.000 0.00 0.00 35.59 4.20
4671 9609 2.850833 TGAATCAGTCCTTGGAGGGAT 58.149 47.619 0.00 0.00 37.73 3.85
4672 9610 3.192944 TGAATCAGTCCTTGGAGGGATT 58.807 45.455 12.63 12.63 37.73 3.01
4673 9611 3.054139 TGAATCAGTCCTTGGAGGGATTG 60.054 47.826 15.87 1.16 42.22 2.67
4674 9612 2.044793 TCAGTCCTTGGAGGGATTGT 57.955 50.000 6.05 0.00 41.77 2.71
4675 9613 1.909302 TCAGTCCTTGGAGGGATTGTC 59.091 52.381 6.05 0.00 41.77 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
94 95 6.350864 CCCAGCTATATCAGATCGTTTGAGAT 60.351 42.308 0.00 0.00 31.92 2.75
97 98 4.832823 TCCCAGCTATATCAGATCGTTTGA 59.167 41.667 0.00 0.00 0.00 2.69
98 99 5.139435 TCCCAGCTATATCAGATCGTTTG 57.861 43.478 0.00 0.00 0.00 2.93
100 101 5.019470 TCATCCCAGCTATATCAGATCGTT 58.981 41.667 0.00 0.00 0.00 3.85
101 102 4.604156 TCATCCCAGCTATATCAGATCGT 58.396 43.478 0.00 0.00 0.00 3.73
103 104 7.337167 ACAAATCATCCCAGCTATATCAGATC 58.663 38.462 0.00 0.00 0.00 2.75
104 105 7.268212 ACAAATCATCCCAGCTATATCAGAT 57.732 36.000 0.00 0.00 0.00 2.90
105 106 6.692849 ACAAATCATCCCAGCTATATCAGA 57.307 37.500 0.00 0.00 0.00 3.27
148 149 4.070009 CCTTACCAACTGAACCTGTAACC 58.930 47.826 0.00 0.00 0.00 2.85
179 180 2.357517 CTTGAACGCCGCACTCCT 60.358 61.111 0.00 0.00 0.00 3.69
181 182 1.358725 TATGCTTGAACGCCGCACTC 61.359 55.000 0.00 0.00 36.37 3.51
190 191 2.611518 ACTCAGCTCGTATGCTTGAAC 58.388 47.619 0.00 0.00 41.98 3.18
247 248 8.762481 AGTTGATGGTAGTCACATAGTATGTA 57.238 34.615 15.38 0.00 42.70 2.29
311 312 2.348998 GGCAGCTGCTACTGGTGT 59.651 61.111 35.82 0.00 41.70 4.16
382 383 0.109342 CCACAGTGGAAGAAGGCAGT 59.891 55.000 15.35 0.00 40.96 4.40
397 398 8.739039 CCAAAGTAATAAGAACATGATTCCACA 58.261 33.333 0.00 0.00 0.00 4.17
409 410 7.546667 CCGCTGTAGTAACCAAAGTAATAAGAA 59.453 37.037 0.00 0.00 0.00 2.52
415 416 4.870123 TCCGCTGTAGTAACCAAAGTAA 57.130 40.909 0.00 0.00 0.00 2.24
430 431 3.428045 GGGAAACAGAATCAATTCCGCTG 60.428 47.826 0.00 0.00 41.80 5.18
433 434 3.088532 TGGGGAAACAGAATCAATTCCG 58.911 45.455 0.00 0.00 41.80 4.30
451 452 2.687935 CAAATACCGAAATCCAGGTGGG 59.312 50.000 0.00 0.00 41.51 4.61
476 477 2.100631 CGTGGCCGTAGCTTTCAGG 61.101 63.158 0.00 0.00 39.73 3.86
479 480 3.497031 GCCGTGGCCGTAGCTTTC 61.497 66.667 0.00 0.00 39.73 2.62
503 504 2.887152 AGCCAGGTGATGAAACAAACTC 59.113 45.455 0.00 0.00 0.00 3.01
505 506 3.733443 AAGCCAGGTGATGAAACAAAC 57.267 42.857 0.00 0.00 0.00 2.93
515 516 4.711399 CATGATGAGAATAAGCCAGGTGA 58.289 43.478 0.00 0.00 0.00 4.02
580 581 4.166888 TCATCCTCAGGCGCTGGC 62.167 66.667 7.64 0.00 38.90 4.85
596 597 4.212214 CACACTAAAACCACAAGAGCTCTC 59.788 45.833 18.55 0.00 0.00 3.20
597 598 4.130118 CACACTAAAACCACAAGAGCTCT 58.870 43.478 11.45 11.45 0.00 4.09
647 648 2.086869 CAACCCACTGCCAATAGACTG 58.913 52.381 0.00 0.00 0.00 3.51
665 666 3.436704 GTCTGATTGCGGACTTGATTCAA 59.563 43.478 0.00 0.00 45.15 2.69
741 742 3.256631 AGATTTTCCACATTGTGACAGGC 59.743 43.478 18.33 3.39 35.23 4.85
742 743 5.392380 GCTAGATTTTCCACATTGTGACAGG 60.392 44.000 18.33 1.38 35.23 4.00
743 744 5.392380 GGCTAGATTTTCCACATTGTGACAG 60.392 44.000 18.33 1.90 35.23 3.51
744 745 4.458989 GGCTAGATTTTCCACATTGTGACA 59.541 41.667 18.33 1.43 35.23 3.58
745 746 4.702131 AGGCTAGATTTTCCACATTGTGAC 59.298 41.667 18.33 2.95 35.23 3.67
746 747 4.922206 AGGCTAGATTTTCCACATTGTGA 58.078 39.130 18.33 1.86 35.23 3.58
747 748 5.647658 TGTAGGCTAGATTTTCCACATTGTG 59.352 40.000 9.92 9.92 0.00 3.33
748 749 5.815581 TGTAGGCTAGATTTTCCACATTGT 58.184 37.500 0.00 0.00 0.00 2.71
751 752 4.876107 CGTTGTAGGCTAGATTTTCCACAT 59.124 41.667 0.00 0.00 0.00 3.21
765 766 0.384669 AGATACTCCGCGTTGTAGGC 59.615 55.000 4.92 4.61 0.00 3.93
772 773 1.471119 TTTCCAGAGATACTCCGCGT 58.529 50.000 4.92 0.00 0.00 6.01
897 1799 6.239887 GCTGGGAACTTGGGATACTGATTATA 60.240 42.308 0.00 0.00 0.00 0.98
914 1816 4.097892 CCAATTAATAGTGTGGCTGGGAAC 59.902 45.833 0.00 0.00 0.00 3.62
915 1817 4.264172 ACCAATTAATAGTGTGGCTGGGAA 60.264 41.667 4.15 0.00 34.27 3.97
916 1818 3.268334 ACCAATTAATAGTGTGGCTGGGA 59.732 43.478 4.15 0.00 34.27 4.37
917 1819 3.631250 ACCAATTAATAGTGTGGCTGGG 58.369 45.455 4.15 0.00 34.27 4.45
918 1820 7.362056 GCATATACCAATTAATAGTGTGGCTGG 60.362 40.741 4.15 1.19 34.27 4.85
919 1821 7.174772 TGCATATACCAATTAATAGTGTGGCTG 59.825 37.037 4.15 0.15 34.27 4.85
920 1822 7.230747 TGCATATACCAATTAATAGTGTGGCT 58.769 34.615 4.15 0.00 34.27 4.75
921 1823 7.447374 TGCATATACCAATTAATAGTGTGGC 57.553 36.000 4.15 5.71 34.27 5.01
943 1845 4.892433 ACTAGTTGATCATATCCAGCTGC 58.108 43.478 8.66 0.00 0.00 5.25
970 1872 3.090532 GGAGGGCAAGGGGTCGAT 61.091 66.667 0.00 0.00 0.00 3.59
975 1877 1.926426 CTACCAAGGAGGGCAAGGGG 61.926 65.000 0.00 0.00 43.89 4.79
994 1896 9.871238 TGATATCCTAGTTTGTTCTGTTAAGAC 57.129 33.333 0.00 0.00 29.98 3.01
1021 2251 1.937191 TCACAGATGCACTAGGGACA 58.063 50.000 0.00 0.00 0.00 4.02
1077 2307 5.745227 ACAGTGAAGGATTGTAGGGTAATG 58.255 41.667 0.00 0.00 0.00 1.90
1132 3075 1.798626 TCTCCTCCCTGGACATGATG 58.201 55.000 0.00 0.00 40.56 3.07
1226 3169 1.295792 TTCTTCAACACCGCACTCAC 58.704 50.000 0.00 0.00 0.00 3.51
1283 3226 5.586243 ACATAGTATGTTCCTGTGTTGATGC 59.414 40.000 10.10 0.00 41.63 3.91
1353 3296 5.419542 CAGCTGCTACTGGTATTGAAGTTA 58.580 41.667 0.00 0.00 33.85 2.24
1412 3403 5.880054 AATTGAACCAATTCCGTAGTCTG 57.120 39.130 0.00 0.00 39.50 3.51
1414 3405 6.084277 GTGAAATTGAACCAATTCCGTAGTC 58.916 40.000 5.52 0.60 42.32 2.59
1427 3442 3.665745 AGCCATGTGGTGAAATTGAAC 57.334 42.857 0.35 0.00 37.57 3.18
1591 3606 3.189080 TCAAGATCTTCAACCGCACAATG 59.811 43.478 4.57 0.00 0.00 2.82
1735 3759 3.620472 GCATTGGCATCCACAGGAAATTT 60.620 43.478 0.00 0.00 40.72 1.82
1757 3784 2.575805 AAAGACAGAAGCCTTCCTGG 57.424 50.000 0.00 0.00 34.85 4.45
1796 3835 5.335127 GTGATCACCTGATTGTATTGTTGC 58.665 41.667 15.31 0.00 34.37 4.17
1821 3860 7.454260 AATTTGTGAGGAATAAGAACCACTC 57.546 36.000 0.00 0.00 0.00 3.51
1822 3861 7.839680 AAATTTGTGAGGAATAAGAACCACT 57.160 32.000 0.00 0.00 0.00 4.00
1832 3871 9.147732 AGGAAAGAAACTAAATTTGTGAGGAAT 57.852 29.630 0.00 0.00 0.00 3.01
1839 3878 9.025041 CATAGGGAGGAAAGAAACTAAATTTGT 57.975 33.333 0.00 0.00 0.00 2.83
1841 3880 9.244292 GACATAGGGAGGAAAGAAACTAAATTT 57.756 33.333 0.00 0.00 0.00 1.82
1843 3882 8.164057 AGACATAGGGAGGAAAGAAACTAAAT 57.836 34.615 0.00 0.00 0.00 1.40
1865 3921 7.099764 TGAGGTCATGTCAATTCTCTAAAGAC 58.900 38.462 0.00 0.00 0.00 3.01
1867 3923 7.912056 TTGAGGTCATGTCAATTCTCTAAAG 57.088 36.000 0.00 0.00 0.00 1.85
1871 3927 5.709164 CCTTTTGAGGTCATGTCAATTCTCT 59.291 40.000 0.00 0.00 33.95 3.10
1872 3928 5.474876 ACCTTTTGAGGTCATGTCAATTCTC 59.525 40.000 0.00 0.00 37.74 2.87
1899 3994 8.658840 ACCCCAGTGTTTTGTACAATATAATT 57.341 30.769 9.56 0.00 38.80 1.40
1903 3998 6.071984 TGAACCCCAGTGTTTTGTACAATAT 58.928 36.000 9.56 0.00 38.80 1.28
1904 3999 5.446860 TGAACCCCAGTGTTTTGTACAATA 58.553 37.500 9.56 1.25 38.80 1.90
1919 4014 1.707989 TGCATAGGAAACTGAACCCCA 59.292 47.619 0.00 0.00 43.88 4.96
1921 4016 2.790433 TGTGCATAGGAAACTGAACCC 58.210 47.619 0.00 0.00 43.88 4.11
1922 4017 5.414454 TGTTATGTGCATAGGAAACTGAACC 59.586 40.000 0.00 0.00 43.88 3.62
1923 4018 6.314784 GTGTTATGTGCATAGGAAACTGAAC 58.685 40.000 0.00 0.00 43.88 3.18
1925 4020 4.941263 GGTGTTATGTGCATAGGAAACTGA 59.059 41.667 0.00 0.00 43.88 3.41
1926 4021 4.699735 TGGTGTTATGTGCATAGGAAACTG 59.300 41.667 0.00 0.00 43.88 3.16
1927 4022 8.070676 GCATGGTGTTATGTGCATAGGAAACT 62.071 42.308 0.00 0.00 39.93 2.66
1928 4023 5.581605 CATGGTGTTATGTGCATAGGAAAC 58.418 41.667 0.00 0.00 0.00 2.78
1929 4024 4.097741 GCATGGTGTTATGTGCATAGGAAA 59.902 41.667 0.00 0.00 37.52 3.13
1930 4025 3.631686 GCATGGTGTTATGTGCATAGGAA 59.368 43.478 0.00 0.00 37.52 3.36
1933 4030 4.635833 TTGCATGGTGTTATGTGCATAG 57.364 40.909 0.00 0.00 45.80 2.23
1935 4032 4.081586 TGAATTGCATGGTGTTATGTGCAT 60.082 37.500 0.00 0.00 45.80 3.96
1942 4039 9.747293 CATACATAATTGAATTGCATGGTGTTA 57.253 29.630 0.00 0.00 0.00 2.41
1944 4041 6.702723 GCATACATAATTGAATTGCATGGTGT 59.297 34.615 0.00 0.00 0.00 4.16
1952 4049 7.859377 GTCCAGAGTGCATACATAATTGAATTG 59.141 37.037 0.00 0.00 0.00 2.32
1954 4051 7.285566 AGTCCAGAGTGCATACATAATTGAAT 58.714 34.615 0.00 0.00 0.00 2.57
1957 4054 7.212976 ACTAGTCCAGAGTGCATACATAATTG 58.787 38.462 0.00 0.00 0.00 2.32
1958 4055 7.366847 ACTAGTCCAGAGTGCATACATAATT 57.633 36.000 0.00 0.00 0.00 1.40
1962 4059 5.423610 AGAAACTAGTCCAGAGTGCATACAT 59.576 40.000 0.00 0.00 0.00 2.29
1963 4060 4.772624 AGAAACTAGTCCAGAGTGCATACA 59.227 41.667 0.00 0.00 0.00 2.29
1973 4071 5.582665 GTGCATAGGAAAGAAACTAGTCCAG 59.417 44.000 0.00 0.00 32.19 3.86
1976 4074 6.818644 TGATGTGCATAGGAAAGAAACTAGTC 59.181 38.462 0.00 0.00 0.00 2.59
1977 4075 6.595716 GTGATGTGCATAGGAAAGAAACTAGT 59.404 38.462 0.00 0.00 0.00 2.57
1981 4079 5.392380 CCAGTGATGTGCATAGGAAAGAAAC 60.392 44.000 0.00 0.00 0.00 2.78
1989 4087 2.558378 CAGACCAGTGATGTGCATAGG 58.442 52.381 0.00 0.00 0.00 2.57
1990 4088 2.558378 CCAGACCAGTGATGTGCATAG 58.442 52.381 0.00 0.00 0.00 2.23
1991 4089 1.407299 GCCAGACCAGTGATGTGCATA 60.407 52.381 0.00 0.00 0.00 3.14
1992 4090 0.679002 GCCAGACCAGTGATGTGCAT 60.679 55.000 0.00 0.00 0.00 3.96
1994 4092 2.042831 GGCCAGACCAGTGATGTGC 61.043 63.158 0.00 0.00 38.86 4.57
2004 4102 0.251341 AAAGGTGATGTGGCCAGACC 60.251 55.000 5.11 10.56 39.84 3.85
2007 4105 1.606224 GCAAAAAGGTGATGTGGCCAG 60.606 52.381 5.11 0.00 0.00 4.85
2012 4110 2.034939 TGCAGAGCAAAAAGGTGATGTG 59.965 45.455 0.00 0.00 34.76 3.21
2013 4111 2.035066 GTGCAGAGCAAAAAGGTGATGT 59.965 45.455 0.00 0.00 41.47 3.06
2015 4113 2.309613 TGTGCAGAGCAAAAAGGTGAT 58.690 42.857 0.00 0.00 41.47 3.06
2016 4114 1.761449 TGTGCAGAGCAAAAAGGTGA 58.239 45.000 0.00 0.00 41.47 4.02
2020 4265 4.114073 TCACATTTGTGCAGAGCAAAAAG 58.886 39.130 12.30 7.64 46.82 2.27
2023 4279 3.318557 TGATCACATTTGTGCAGAGCAAA 59.681 39.130 5.81 3.73 45.25 3.68
2027 4283 5.705902 TGATTTGATCACATTTGTGCAGAG 58.294 37.500 5.81 0.00 45.25 3.35
2029 4285 5.466819 ACTGATTTGATCACATTTGTGCAG 58.533 37.500 5.81 7.93 45.25 4.41
2033 4289 5.693104 GCACAACTGATTTGATCACATTTGT 59.307 36.000 12.11 12.11 38.73 2.83
2040 4296 4.793678 GCACTTGCACAACTGATTTGATCA 60.794 41.667 0.00 0.00 41.59 2.92
2065 4321 7.578458 AACCCACTTCTTAGATAGGGTAAAA 57.422 36.000 16.49 0.00 40.90 1.52
2086 4343 5.397142 AGAAATGCATTCAGAAGGAAACC 57.603 39.130 13.38 0.00 40.72 3.27
2090 4347 7.523293 TTGTAAAGAAATGCATTCAGAAGGA 57.477 32.000 13.38 0.00 40.72 3.36
2097 4354 8.755696 TTGTACCATTGTAAAGAAATGCATTC 57.244 30.769 13.38 6.58 38.39 2.67
2101 4358 7.956943 GCAAATTGTACCATTGTAAAGAAATGC 59.043 33.333 0.00 0.00 34.35 3.56
2120 4378 4.730657 CTCCTTGAAGTAGCTGCAAATTG 58.269 43.478 4.12 0.00 27.38 2.32
2121 4379 3.192212 GCTCCTTGAAGTAGCTGCAAATT 59.808 43.478 4.12 0.00 27.38 1.82
2168 4426 2.221981 CAGAAGAAAGCACGAGTCCAAC 59.778 50.000 0.00 0.00 0.00 3.77
2177 4435 3.393089 TCTCACTCCAGAAGAAAGCAC 57.607 47.619 0.00 0.00 0.00 4.40
2207 4465 9.241919 TGTTGGATTTATAAGTCACACATTGAT 57.758 29.630 9.86 0.00 36.32 2.57
2208 4466 8.628630 TGTTGGATTTATAAGTCACACATTGA 57.371 30.769 9.86 0.00 0.00 2.57
2209 4467 9.859427 ATTGTTGGATTTATAAGTCACACATTG 57.141 29.630 9.86 0.00 0.00 2.82
2226 4487 7.092623 TGTGTTGTATAGTAGGGATTGTTGGAT 60.093 37.037 0.00 0.00 0.00 3.41
2237 4534 9.787532 CCAAAATTGATTGTGTTGTATAGTAGG 57.212 33.333 0.00 0.00 0.00 3.18
2244 4541 9.823647 ATAACAACCAAAATTGATTGTGTTGTA 57.176 25.926 19.20 13.01 44.49 2.41
2269 4599 9.941325 GATAGCAATAGCAGATAATATGGCTAT 57.059 33.333 11.94 11.94 46.93 2.97
2272 4602 6.429385 GGGATAGCAATAGCAGATAATATGGC 59.571 42.308 0.00 0.00 45.49 4.40
2326 4656 7.805071 CAGACAAACTAAAAGGTAGAAAGCATG 59.195 37.037 0.00 0.00 0.00 4.06
2334 4666 6.801539 TCATGCAGACAAACTAAAAGGTAG 57.198 37.500 0.00 0.00 0.00 3.18
2345 4677 9.288124 CGTATTAATTTGAATCATGCAGACAAA 57.712 29.630 0.00 0.00 35.49 2.83
2346 4678 7.914871 CCGTATTAATTTGAATCATGCAGACAA 59.085 33.333 0.00 0.00 0.00 3.18
2348 4680 6.360681 GCCGTATTAATTTGAATCATGCAGAC 59.639 38.462 0.00 0.00 0.00 3.51
2350 4685 5.630680 GGCCGTATTAATTTGAATCATGCAG 59.369 40.000 0.00 0.00 0.00 4.41
2352 4687 5.402270 GTGGCCGTATTAATTTGAATCATGC 59.598 40.000 0.00 0.00 0.00 4.06
2357 4692 8.663911 CAAAATTGTGGCCGTATTAATTTGAAT 58.336 29.630 12.74 0.00 32.92 2.57
2360 4695 6.128445 TGCAAAATTGTGGCCGTATTAATTTG 60.128 34.615 12.74 11.49 32.92 2.32
2361 4696 5.934625 TGCAAAATTGTGGCCGTATTAATTT 59.065 32.000 0.00 4.01 33.71 1.82
2365 4700 4.727507 ATGCAAAATTGTGGCCGTATTA 57.272 36.364 0.00 0.00 0.00 0.98
2367 4702 4.935352 ATATGCAAAATTGTGGCCGTAT 57.065 36.364 0.00 0.00 0.00 3.06
2368 4703 4.640647 TGTATATGCAAAATTGTGGCCGTA 59.359 37.500 0.00 0.00 0.00 4.02
2403 4828 5.537300 TGACAGATAAGCTAGATGAACCC 57.463 43.478 0.00 0.00 0.00 4.11
2404 4829 6.578023 AGTTGACAGATAAGCTAGATGAACC 58.422 40.000 0.00 0.00 0.00 3.62
2463 4896 1.490490 GGAATATCCACACAGCCAGGA 59.510 52.381 0.00 0.00 36.28 3.86
2563 4996 7.885922 ACTATATCTGTGTAGGAGTACCTCATG 59.114 40.741 0.00 0.00 46.43 3.07
2565 4998 7.390013 ACTATATCTGTGTAGGAGTACCTCA 57.610 40.000 0.00 0.00 46.43 3.86
2680 5113 1.483827 CCCTCTAGCATCTTCACAGCA 59.516 52.381 0.00 0.00 0.00 4.41
2683 5116 1.571955 TGCCCTCTAGCATCTTCACA 58.428 50.000 0.00 0.00 38.00 3.58
2731 5164 0.174845 CGATGGTGGAAACCTCGCTA 59.825 55.000 0.00 0.00 0.00 4.26
2740 5173 1.526887 GATCCTGCCGATGGTGGAA 59.473 57.895 4.38 0.00 33.16 3.53
2884 5317 0.756294 TCTCGTTGAGCTTGTCCCAA 59.244 50.000 0.00 0.00 0.00 4.12
2927 5360 1.553704 CCCCTGGTGTAGGTAGTTGAC 59.446 57.143 0.00 0.00 45.80 3.18
3100 5533 6.155221 GGGATATCATCTCAGGTGCTATGTAA 59.845 42.308 4.83 0.00 0.00 2.41
3109 5542 2.813907 CTCCGGGATATCATCTCAGGT 58.186 52.381 0.00 0.00 0.00 4.00
3205 5638 2.502538 CCCCATGTTTGGATCAGCATTT 59.497 45.455 0.00 0.00 46.92 2.32
3300 5736 2.416901 TGCATGTCAGCAGCAACAA 58.583 47.368 4.88 0.00 40.11 2.83
3403 5839 2.506061 CCCAGCCTCCAGGATCTCG 61.506 68.421 0.00 0.00 37.39 4.04
3628 8463 5.181811 GGTTGGTACTGTTACAACCATTACC 59.818 44.000 27.27 17.59 42.65 2.85
3631 8466 4.146564 GGGTTGGTACTGTTACAACCATT 58.853 43.478 30.24 0.00 42.65 3.16
3881 8753 6.346096 TCCATAAACTGTATGTTACTGCCTC 58.654 40.000 0.00 0.00 38.03 4.70
3910 8783 6.514048 GCAAACTAGCTTTTCAGTGACAATCT 60.514 38.462 0.00 0.00 0.00 2.40
3923 8796 9.927668 AATACAAAATGTATGCAAACTAGCTTT 57.072 25.926 3.92 0.00 42.29 3.51
3960 8834 7.361438 TGGAGACCAATGGTTTTATGGATATT 58.639 34.615 6.30 0.00 35.25 1.28
3962 8836 6.334378 TGGAGACCAATGGTTTTATGGATA 57.666 37.500 6.30 0.00 35.25 2.59
3990 8864 5.007332 ACCGCCTTACAATAAATTCGTGATC 59.993 40.000 0.00 0.00 0.00 2.92
4006 8880 4.333913 TGTGTACACTAAAACCGCCTTA 57.666 40.909 25.60 0.00 0.00 2.69
4009 8883 2.613133 TGTTGTGTACACTAAAACCGCC 59.387 45.455 25.60 6.33 0.00 6.13
4012 8886 7.081976 GGAATGATGTTGTGTACACTAAAACC 58.918 38.462 25.60 10.96 40.19 3.27
4142 9026 3.899980 AGCAGCAAAGAGGAAAAAGGAAT 59.100 39.130 0.00 0.00 0.00 3.01
4146 9030 5.695851 TCTTAGCAGCAAAGAGGAAAAAG 57.304 39.130 0.00 0.00 0.00 2.27
4252 9136 3.973206 TCTTTTTCCTGCCTACGATCA 57.027 42.857 0.00 0.00 0.00 2.92
4365 9251 1.950216 TGTTACTGCAATTTCCACGCA 59.050 42.857 0.00 0.00 0.00 5.24
4366 9252 2.031157 AGTGTTACTGCAATTTCCACGC 60.031 45.455 0.00 0.00 0.00 5.34
4367 9253 3.896648 AGTGTTACTGCAATTTCCACG 57.103 42.857 0.00 0.00 0.00 4.94
4379 9280 5.010415 AGACTTGGCTAACGTTAGTGTTACT 59.990 40.000 30.43 20.62 33.32 2.24
4388 9289 3.746045 TCTTCAGACTTGGCTAACGTT 57.254 42.857 5.88 5.88 0.00 3.99
4394 9295 2.039480 TCTGCATTCTTCAGACTTGGCT 59.961 45.455 0.00 0.00 35.81 4.75
4396 9297 4.321718 TCTTCTGCATTCTTCAGACTTGG 58.678 43.478 0.00 0.00 39.99 3.61
4399 9300 4.527816 AGACTCTTCTGCATTCTTCAGACT 59.472 41.667 0.00 0.00 39.99 3.24
4421 9354 1.679139 TGCTGGTGTTGGAACAGAAG 58.321 50.000 0.00 0.00 42.39 2.85
4439 9372 5.063186 GCTTCAGGACGATATATCAGCATTG 59.937 44.000 13.11 4.66 0.00 2.82
4446 9379 4.448537 AGCAGCTTCAGGACGATATATC 57.551 45.455 2.34 2.34 0.00 1.63
4447 9380 6.336566 CAATAGCAGCTTCAGGACGATATAT 58.663 40.000 0.00 0.00 0.00 0.86
4448 9381 5.714047 CAATAGCAGCTTCAGGACGATATA 58.286 41.667 0.00 0.00 0.00 0.86
4449 9382 4.564041 CAATAGCAGCTTCAGGACGATAT 58.436 43.478 0.00 0.00 0.00 1.63
4453 9386 0.654683 GCAATAGCAGCTTCAGGACG 59.345 55.000 0.00 0.00 41.58 4.79
4454 9387 1.669779 CAGCAATAGCAGCTTCAGGAC 59.330 52.381 0.00 0.00 45.49 3.85
4455 9388 1.280133 ACAGCAATAGCAGCTTCAGGA 59.720 47.619 0.00 0.00 45.49 3.86
4456 9389 1.747709 ACAGCAATAGCAGCTTCAGG 58.252 50.000 0.00 0.00 45.49 3.86
4457 9390 2.486982 ACAACAGCAATAGCAGCTTCAG 59.513 45.455 0.00 0.00 45.49 3.02
4458 9391 2.485426 GACAACAGCAATAGCAGCTTCA 59.515 45.455 0.00 0.00 45.49 3.02
4459 9392 2.159462 GGACAACAGCAATAGCAGCTTC 60.159 50.000 0.00 0.00 45.49 3.86
4460 9393 1.815003 GGACAACAGCAATAGCAGCTT 59.185 47.619 0.00 0.00 45.49 3.74
4461 9394 1.271543 TGGACAACAGCAATAGCAGCT 60.272 47.619 0.00 0.00 45.49 4.24
4462 9395 1.135575 GTGGACAACAGCAATAGCAGC 60.136 52.381 0.00 0.00 45.49 5.25
4463 9396 2.161012 CAGTGGACAACAGCAATAGCAG 59.839 50.000 0.00 0.00 45.49 4.24
4464 9397 2.153645 CAGTGGACAACAGCAATAGCA 58.846 47.619 0.00 0.00 45.49 3.49
4465 9398 1.135575 GCAGTGGACAACAGCAATAGC 60.136 52.381 0.00 0.00 40.82 2.97
4466 9399 2.907910 GCAGTGGACAACAGCAATAG 57.092 50.000 0.00 0.00 40.82 1.73
4471 9404 0.670162 ACAATGCAGTGGACAACAGC 59.330 50.000 19.57 0.00 41.47 4.40
4472 9405 3.141398 AGTACAATGCAGTGGACAACAG 58.859 45.455 29.60 0.00 34.49 3.16
4473 9406 3.207265 AGTACAATGCAGTGGACAACA 57.793 42.857 29.60 0.00 34.49 3.33
4474 9407 4.152402 CAGTAGTACAATGCAGTGGACAAC 59.848 45.833 29.60 16.13 34.49 3.32
4475 9408 4.314961 CAGTAGTACAATGCAGTGGACAA 58.685 43.478 29.60 4.91 34.49 3.18
4476 9409 3.306710 CCAGTAGTACAATGCAGTGGACA 60.307 47.826 29.60 13.97 34.49 4.02
4477 9410 3.262420 CCAGTAGTACAATGCAGTGGAC 58.738 50.000 21.75 21.75 34.01 4.02
4478 9411 2.354704 GCCAGTAGTACAATGCAGTGGA 60.355 50.000 19.57 7.14 34.01 4.02
4479 9412 2.009774 GCCAGTAGTACAATGCAGTGG 58.990 52.381 19.57 2.42 35.06 4.00
4480 9413 2.698803 TGCCAGTAGTACAATGCAGTG 58.301 47.619 13.51 13.51 0.00 3.66
4481 9414 3.244561 ACTTGCCAGTAGTACAATGCAGT 60.245 43.478 2.52 5.79 0.00 4.40
4482 9415 3.125829 CACTTGCCAGTAGTACAATGCAG 59.874 47.826 2.52 5.27 0.00 4.41
4483 9416 3.073678 CACTTGCCAGTAGTACAATGCA 58.926 45.455 2.52 5.28 0.00 3.96
4484 9417 2.420022 CCACTTGCCAGTAGTACAATGC 59.580 50.000 2.52 2.65 0.00 3.56
4485 9418 3.674997 ACCACTTGCCAGTAGTACAATG 58.325 45.455 2.52 0.00 0.00 2.82
4486 9419 4.623171 GCTACCACTTGCCAGTAGTACAAT 60.623 45.833 2.52 0.00 36.64 2.71
4487 9420 3.306502 GCTACCACTTGCCAGTAGTACAA 60.307 47.826 2.52 0.00 36.64 2.41
4506 9439 1.340017 GGCAGATTGTGACAAGGGCTA 60.340 52.381 15.03 0.00 32.31 3.93
4512 9445 2.507484 CAGGAAGGCAGATTGTGACAA 58.493 47.619 0.00 0.00 36.10 3.18
4530 9463 0.885879 AATGACATGTGCACTGCCAG 59.114 50.000 19.41 5.77 0.00 4.85
4535 9468 4.558226 TTCCTCTAATGACATGTGCACT 57.442 40.909 19.41 0.00 0.00 4.40
4536 9469 6.925610 TTATTCCTCTAATGACATGTGCAC 57.074 37.500 10.75 10.75 0.00 4.57
4609 9543 8.844244 CAGAATTTGCAGCTAGGAGTAATAAAT 58.156 33.333 0.00 0.00 0.00 1.40
4619 9557 5.571784 TTTGATCAGAATTTGCAGCTAGG 57.428 39.130 0.00 0.00 0.00 3.02
4620 9558 9.745880 ATTATTTTGATCAGAATTTGCAGCTAG 57.254 29.630 15.89 0.00 0.00 3.42
4639 9577 9.492973 CCAAGGACTGATTCAAACAATTATTTT 57.507 29.630 0.00 0.00 0.00 1.82
4640 9578 8.869109 TCCAAGGACTGATTCAAACAATTATTT 58.131 29.630 0.00 0.00 0.00 1.40
4641 9579 8.421249 TCCAAGGACTGATTCAAACAATTATT 57.579 30.769 0.00 0.00 0.00 1.40
4642 9580 7.123247 CCTCCAAGGACTGATTCAAACAATTAT 59.877 37.037 0.00 0.00 37.67 1.28
4643 9581 6.434028 CCTCCAAGGACTGATTCAAACAATTA 59.566 38.462 0.00 0.00 37.67 1.40
4644 9582 5.244626 CCTCCAAGGACTGATTCAAACAATT 59.755 40.000 0.00 0.00 37.67 2.32
4645 9583 4.768968 CCTCCAAGGACTGATTCAAACAAT 59.231 41.667 0.00 0.00 37.67 2.71
4646 9584 4.144297 CCTCCAAGGACTGATTCAAACAA 58.856 43.478 0.00 0.00 37.67 2.83
4647 9585 3.498481 CCCTCCAAGGACTGATTCAAACA 60.498 47.826 0.00 0.00 37.67 2.83
4648 9586 3.084786 CCCTCCAAGGACTGATTCAAAC 58.915 50.000 0.00 0.00 37.67 2.93
4649 9587 2.986019 TCCCTCCAAGGACTGATTCAAA 59.014 45.455 0.00 0.00 37.67 2.69
4650 9588 2.631384 TCCCTCCAAGGACTGATTCAA 58.369 47.619 0.00 0.00 37.67 2.69
4651 9589 2.342406 TCCCTCCAAGGACTGATTCA 57.658 50.000 0.00 0.00 37.67 2.57
4652 9590 3.054065 ACAATCCCTCCAAGGACTGATTC 60.054 47.826 0.00 0.00 35.07 2.52
4653 9591 2.922283 ACAATCCCTCCAAGGACTGATT 59.078 45.455 0.00 3.64 35.07 2.57
4654 9592 2.507471 GACAATCCCTCCAAGGACTGAT 59.493 50.000 0.00 0.00 35.07 2.90
4655 9593 1.909302 GACAATCCCTCCAAGGACTGA 59.091 52.381 0.00 0.00 35.07 3.41
4656 9594 2.409948 GACAATCCCTCCAAGGACTG 57.590 55.000 0.00 0.00 39.10 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.